Release Notes & Stats
Database Statistics Release 1 (hg17)
|
RIP Class |
# of loci (unique/total) |
# of loci outside hg17 |
# of loci with genotype |
Loci in gene context (P/E/I/IG*) |
Disease- related loci |
|
Alu |
1625/2299 |
395 |
528 |
41/18/623/943 |
33 |
|
L1 |
407/534 |
132 |
81 |
7/9/130/261 |
15 |
|
SVA |
63/74 |
4 |
31 |
7/3/22/31 |
3 |
|
Total |
2095/2897 |
531 |
640 |
55/30/775/1235 |
51 |
*: P:
promoter up to 5kb; E: exon; I: intron; IG: intergenic region;
Major changes in Release 2 include:
- dbRIP data release 2.0 for hg18 & hg19, which covers ~650 new RIPs found in the Venter diploid genome;
- the use of new dbRIP ID system: unique numbers at fixed length (7 digits) with the 1st digit indicative of the TE type as shown below:
- 1000000~1999999 for Alus
- 2000000~2999999 for L1s
- 3000000~3999999 for SVAs
- 4000000~4999999 for ERVs
- The remaining 5 numbers can be used for other types of REs and/or extra Alus if 1000000~1999999 runs out.
- support for hg19;
- addition of a position mapping utility for identifying overlap with RIPs in dbRIP
Database Statistics Release 2 (hg18)
|
RIP Class |
# of loci (unique/total) |
# of loci outside hg18 |
# of loci with genotype |
Loci in gene context (D/P/E/I/IG*) |
Disease- related loci |
|
Alu |
2086/2708 |
858 |
526 |
6/7/24/765/1284 |
33 |
|
L1 |
598/800 |
299 |
123 |
2/2/10/183/401 |
15 |
|
SVA |
77/87 |
18 |
31 |
1/1/4/29/42 |
3 |
|
HERV |
10/10 |
2 |
6 |
0/0/0/5/5 |
/ |
|
Total |
2771/3605 |
1177 |
686 |
9/10/38/982/1732 |
51 |
*: D: downstream up to 1kb; P:
promoter up to 1kb; E: exon; I: intron; IG: intergenic region;
Database Statistics Release 2 (hg19)
|
RIP Class |
# of loci (unique/total) |
# of loci outside hg19 |
# of loci with genotype |
Loci in gene context (P/E/I/IG*) |
Disease- related loci |
|
Alu |
2086/2708 |
858 |
526 |
5/7/23/735/1316 |
33 |
|
L1 |
598/800 |
299 |
123 |
2/2/10/182/402 |
15 |
|
SVA |
77/87 |
18 |
31 |
1/1/4/28/43 |
3 |
|
HERV |
10/10 |
2 |
6 |
0/0/0/5/5 |
/ |
|
Total |
2771/3605 |
1177 |
686 |
8/10/37/950/1766 |
51 |
*: D: downstream up to 1kb; P:
promoter up to 1kb; E: exon; I: intron; IG: intergenic region;