dbRIP
  a database of retrotransposon insertion
polymorphisms in humans
Liang Lab

searchdbRIP

A search engine designed to provide an enhanced interface for fast and/or advanced RIP queries that may not be available within the genome browser.

Quick Search: search dbRIP by databaseIDs, by originalIDs, or by locations:

(e.g. 1001461, Ya5NBC132, chr7, chr2:10000-20000, etc.. Multiple IDs/locations should be delimited by commas):


   OR   upload from file (one databaseID or originalID per line):

in Genome



Advanced Search: search dbRIP by specifying search criteria from below:

uncheck criteria you want to have excluded from the search.
search criteria joined by AND logic unless otherwise specified.






select whether RIP is present in reference genome



Data set  

   


chromosome & genomic region
filter by either chromosome or a genomic region. genomic region entry should contain the chromosome, chromStart, and chromEnd (i.e. chr2:20000-20005)
 

    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    
    



OR (exclusive)


 
chromosome and range


maximal distance allowed between RIP and given range



gene context
RIPs may be in multiple genomic contexts simultaneously. RIPs that are present in unchecked genomic contexts will not be returned.

    
    
    
    
    


ethnic population and allele frequency
Input the range of allele frequencies in decimal form. (i.e a population with input 0.2 to 0.3 will only find RIPs for which that population has allele frequencies of 0.2 to 0.3, inclusive. Default is 0 to 1 - includes all allele frequencies.)
More details on the populations and their sources can be found here.


ALL ethnic populations
to

Adm
.
ixed
Amer
.
ican
(AMR)
to
Mexican
in L.A.
Ancestry from L.A.
(MXL)
Puerto Ricans
 from Puerto Rico
(PUR)
Colombians
 from Medellin
(CLM)
Peruvians
 from Lima
(PEL)
to
to
to
to
East Asian (EAS)
to
Han Chinese
 in Beijing
(CHB)
Japanese
 in Tokyo
(JPT)
Southern Han
(CHS)
Chinese Dai
 in Xishuangbanna
(CDX)
Kinh
 in Ho Chi Minh City
(KHV)
to
to
to
to
to
South Asian (SAS)
to
Gujarati Indian
from Houston
(GIH)
Punjabi
from Lahore
(PJL)
Bengali
from Bangladesh
(BEB)
Sri Lankan Tamil
from the UK
(STU)
Indian Telugu
from the UK
(ITU)

to
to
to
to
to
African (AFR)
to
Yoruba
in Ibadan
(YRI)
Luhya
in Webuye
(LWK)
Gambian
in the Gambia
(GWD)
Mende
in Sierra Leone
(MSL)
Esan in Nigeria
(ESN)
Americans of
 Afr
 Americans
ican
Ancestry
(ASW)
Afr
ican
Caribbeans
 in Barbados
(ACB)
to
to
to
to
to
to
to
European (EUR)
to
Euro
pean
Utah
Residents
(CEU)
Toscani
in Italia
(TSI)
Finnish
in Finland
(FIN)
British
in England and Scotland
(GBR)
Iberian
Population in Spain
(IBS)
to
to
to
to
to


subfamily
 

  
      
      
      
      

  
      
      
      
      
      
      

  

  

  



OR (exclusive)


 
separate queries with commas




published by author (last name only)
Author names can be found here. (last name only, e.g., "Batzer"; case sensitive; can leave it blank)


    OR (inclusive)

grouped by Study ID
Study ID can be found here. (Multiple Study IDs should be delimited by commas)


insertion supported by studies