0	chr13	31851500	31851501	1000001	0	+	BRCA2; RIP_Alu_chr13_031_01	GTGCACTAACAAGACAGCAA	TAGATTTTGAAGTTGCAAGATG	SINE	Alu	Yc1	ttacctaccccatggactgttgtgaagattaaatgaattagtacatttactacacatagatctatttctcaaaataatgagcattcagatattagccatc<br>tgtaatgtagttggtgatgattatgattattagagtacatttataattggaggatcatttttgccgtagggaaatagaattattaatagtttgaggcacc<br>tgagaatattatgtgagaaactgattacattaaccacacccttaagatgagctctaattttgttgtatttgtcctgtttaaagccatctagttacaatag<br>atggaacttttttgttctgattgctttttattccaatatcttaaatggtcacagggttatttcagtgaagagcagttaagagccttgaataa<font color="green"><u>TCACAGGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TCACAGGC</u></font>aaatgttgaatgataagaaacaagctcagatccagttggaaattagg<br>aaggccatggaatctgctgaacaaaaggaacaaggtttatcaagggatgtcacaaccgtgtggaagttgcgtattgtaagctattcaaaaaaagaaaaag<br>attcaggtaagtatgtaaatgctttgtttttatcagttttattaacttaaaaaatgaccttactaacaaaatgattataaatccagataaagtataaagt<br>tagtttatatcagagaagcaaaatccactactaatgcccacaaagagataatataaaagaggatctgtatttattttgaaacaaacatttaaatgataat<br>cacttcttccattgcatctttctcatctaaatgttgaatgataag	Other	<UL><LI>Miki Y, Katagiri T, Kasumi F, Yoshimoto T, Nakamura Y. Mutation analysis in the BRCA2 gene in primary breast cancers. Nat Genet. 1996 Jun;13(2):245-7.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8640237">PMID:8640237</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Insertion-specific detection:PCR-SSCP	NA	60	NA	NA	Breast Cancer	exon:CDS:BRCA2:NM_000059:22/27
0	chr6	31574207	31574522	1000002	0	-	AluyMICB; RIP_Alu_chr6_031_01	CTCAGCCCTGCTTTCCCATCT	GCCTTCCAATGCCATTCACAG	SINE	Alu	Yb8	tgcccggagcctgcagactccaacccctcagcttgagagtcaggaccccccacagtccccacagcagcaagaagcaccacctccgggtcccaagaaagga<br>gggccccaactccaggagctgcggcccaggagctgagaacacatcggctccgggagaggacaggacttcagggacctgagatccgcccccagcaccgggg<br>gaagtggctgcctcagcggccgcgctggaacggccttccaatgccattcacaggagcagcccgggaacccaggggcctcagaaggactggtttgtccgaa<br>aagtgagaggagacggaggagaggcgaggagagcaagtgcaggagagaccagaaaatgcgggtgatgcgcgatcccgaggaggactg<font color="green"><u>AAAGGAGACAGGA<br></u></font><font color="red">GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACTAACACGG<br>TGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGCGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTACAGCCTAGGCGACAGAGACTCCGTCTCAGAAAGAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGGAGACAGGA</u></font>gatgggaaagcagggctgaggtgtggcgggaacaggcggcgtccagctccctgcactccagacagcacacc<br>tgagccccgccctgaccgcacagcgctcgcggcaacccacccggacccccggaaacgccccgccgctcccgctccgccggggaccgccaggaaccccact<br>caccagcggcggctgccgggggtgcaaaagggaaggcgacggccagaaacagcaggacccggcccagccccatggcccctacgtcgccaccttctcagct<br>gctcagcagtggccaactgaatgaaacccgtgagaagaccccgtcgaaatttagtcacctgcgccccgctcagcgaccgcttatccagtgaaaactgagg<br>cccggaacttagggcc	UCSC	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Alu polymorphism within the MICB gene and association with HLA-B alleles. Erratum in:    Immunogenetics 2002 Aug;54(5):365. Immunogenetics. 2002 Feb;53(10-11):975-9. Epub 2002 Jan 26.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11862397">PMID:11862397</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	67	665	336	MHC related	intron:MICB:NM:005931:1/6
0	chr6	31079570	31079571	1000003	0	+	AluyTF; RIP_Alu_chr6_031_02	NA	NA	SINE	Alu	NA	tgcttcagcctcccgagtagctgggattacaggtgcgtgccaccacacccagctaatttgtgtgtgtgtgtgtatttttagtagagatggggtttcacaa<br>tgttggccaggctggtctcgaactcctgacctcaggtgatccacccaccttggactcccaaagtgctgggattacaggcatgagccactgcacccggcct<br>aaaaccactggtttatatactttattttattcttattatttttttaaatttgagatggaatctcactctgtcaccgaggctggagtgcagtggcgcaatc<br>tcggctcactgcaacctctgcttcctaggtttaagagattctcctccctcagcctcccaagtagctgggattataggcgagtgccacca<font color="green"><u>TGCCTGGCTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGCCTGGCTAA</u></font>tttttgtatttttagtagagatggggtttcaccactgttgaccaggctagtcttgaactcctaacctcaggtgatccac<br>ccatctcagcctcccaaagtgctgggattagaggcatgacccaccttgcccagccaggtttatatactttaaacaggtgaactatatggtatgtaaatta<br>tagctcaatacagctcttaaatttttaccaggcacattatgtaaataaaaatttttatttcctggccggacatggtggctcacacctgtgatcccagcat<br>tctgggaggctgaggcaggcagatcacttgaggccaggagtttgagaccagcctggccaacatggcaaaaccctgtctctactaaaaatacaaaaattag<br>ccatgcgcgg	Other	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI><LI>Dunn DS, Inoko H, Kulski JK. Dimorphic Alu element located between the TFIIH and CDSN genes within the majorhistocompatibility complex. Electrophoresis. 2003 Aug;24(16):2740-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12929169">PMID:12929169</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	710	426	MHC related	intergenic	
0	chr6	29788448	29788449	1000004	0	-	AluyHF; RIP_Alu_chr6_029_01	GCCTCATGGCCTGAATCTGCCAGTGTCCTT	GTAACTGACCTGCCCTCTATAGTATAGTCT	SINE	Alu	NA	cctttcctcagcaggcctaattgaagcaagtcccctcctatttctcctagagtgtaggtcaaagcaatagatgtgggatgtggtgttgtcagaattcaaa<br>gaggctcaccaggcagtgtgcttccttccttgtagtgaggatgcaagatgcaacactttgtcttttactgtggaggagaaactcctggatgtcctcaacc<br>actggatgaataaaacttcaccacagtggccactcctgaatctctgtgtggtttatcttccatctgctggagagcacgtgttttgccaaggccttcagca<br>tacttcccatctcctactcatccatcctagtcaacatgatgttgttgatgaaataagctgatttaccattctataggatgccag<font color="green"><u>GTTCTTCAGATCTCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GTTCTTCAGATCTCTT</u></font>aagactatactatagagggcaggtcagttacaataaccctgaggccaattatcaataaatgtgttgtggatccc<br>acatgaatcacttcatgtatagtttttctcattggaatggaaaggaatgcactcaccaaatccacagctgcacactttgtgcctgaggccttatcaatct<br>gctctaccagtgatatccagccagcatggcagctgcaattatgactcctactttttcaagtctgaagtaatctcattcattctttaggccccatcaggct<br>tccttggggacagattgctggattacgtgaagataacaggcaactccaacagcacccctcatccttcagctctctaatggtggtgctacacctaaaatac<br>ctacagtacc	Other	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI><LI>Dunn DS, Naruse T, Inoko H, Kulski JK. The association between HLA-A alleles and young Alu dimorphisms near the HLA-J,-H, and -F genes in workshop cell lines and Japanese and Australian populations. J Mol Evol. 2002 Dec;55(6):718-26.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12486530">PMID:12486530</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	68	605	445	MHC related	intergenic
0	chr6	29926852	29926853	1000005	0	+	AluyHG;1104685373306; RIP_Alu_chr6_029_02	CAGGACAACCAGTAAAGATGCTGG;NA	GCTTCAGTTAACATGCAAGTTTATGCC;NA	SINE	Alu	Yb8	acaaaaagaaagagaacaagtaatcttaactattgattccaccatcgtgcagtgcaatagtcaatggctgcaactgaaaaatcaagcaatgttaataaag<br>aaatggtgctttggtgcttagatatgtgaaagtaaagtcaaaagaatcagctgaaacttgaaagtggttgctccctagaaaggcagaaatagagaagaga<br>ggactctccctagaaaggcagagaagactctcatttttctcagaaagtcctgcacaaatatttactctttccattatgtgcaattgtaacttcgaataaa<br>ataaaaacaaaagcttcagttaacatgcaagtttatgcctaatgacaactttgtttaacaatgataaagggctaaccaaaatat<font color="green"><u>AAAAACACTTAAACAT<br></u></font><font color="red">GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT<br>CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA<br>GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAACACTTAAACAT</u></font>aaaacagcatgtataaatgtgtatgtgacatcaaccctgaatacaaacttgaaagaatatgtctataaacaactctgg<br>atagatagcccatgaatgaattccccactccagcatctttactggttgtcctgtgagcctaggcagggaggggaccaggacctgactagggtccctaata<br>ctcttgcttccaggcaagtcctgcatgcactcctgctgcaccaagggctcccatccctgccttggtctgtttcataggtgctcccctaactctctgccac<br>cactgccttacctgggtggagctgaggccgccctgaccaagaagagcaccagccatctatgtgccccaaaaccagaaagtcaaaagaaaccttgcaacag<br>ggtcag	Other;Venter	<UL><LI>Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15592666">PMID:15592666</a>.</LI><LI>Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15996165">PMID:15996165</a>.</LI><LI>Kulski JK, Martinez P, Longman-Jacobsen N, Wang W, Williamson J, Dawkins RL,Shiina T, Naruse T, Inoko H. The association between HLA-A alleles and an Alu dimorphism near HLA-G. J Mol Evol. 2001 Aug;53(2):114-23.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11479682">PMID:11479682</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA;NA	60;NA	540;NA	218;NA	MHC related;NA	intergenic
0	chrY	15584037	15584336	1000006	0	-	Ya5NBC219; RIP_Alu_chrY_015_01	CCTGGCAACCACCATTCTAC	AAACCTGGAGGGCATTCTTT	SINE	Alu	Ya5	aatagaggtataaagggcaaaaaagtttgggaagtgtttattatgtgacctccatgacagatgtatggagtttccctcctttttcttttttctttttgta<br>tgtacttggtactatttataataaaacagtttatataaaaatattaaaataacaatgaccttctattgtgtatatatatacaacattttctttatccttc<br>atctgttgataaatgcaggttgattccatgtctttaccattgtgaataatgctatcattcagccttaaagaaggaatcctgtcattcgcaacaacatggg<br>taaacctggagggcattcttttaagtgaaataagccagataagtaaagacaaatattgcatgaacttacttatatgtgaaggct<font color="green"><u>AAAAAAGTTCAATGCA<br></u></font><font color="red">GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCG<br>TCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAGTTCAATGCA</u></font>tagaagtagagagtagaatggtggttgccaggggctgggagagggagtggattgggagagggggacatgttgctcaaagcatac<br>aaagtttaagttacagaagcggaataacttttggtgatccactgcacagtattgtgacaatggtgaataatgatgcattgtgtatttcaaaattgttaaa<br>agagattataaacattcttaccactgggacataagtatataaagtgatggaaatgctaattgtcttgattcaatcattccaaagtgtatacacatatcat<br>atcatcacattacacccaataaatgtatatgttttgtttttaccaattaaaaatgaagcaatataaaataagatttaaaaataccaacaacaatattgtt<br>	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	445	129	NA	intergenic
0	chr7	107554242	107554548	1000007	0	-	Yb8NBC7; RIP_Alu_chr7_107_01	AGGTTCATCCATGTTGTAGG	CTTAGAAGGGAATCCAGGAG	SINE	Alu	Yb8	gggccttaaccccagatattgtggtgtaattggtatggaatgtgacccgggaagcaggattcaaaaaaaaaaaaaaaacacaaaaaaaaaaaccctggtg<br>attttaatgtgcagtaaagtttggaaagcactgggttatgcccttctcttagaagggaatccaggagcagagcaagtgtgaggggcaaattaatccgttt<br>taggtattggcaagccatcagtggttctcaaccctggctacatctcagaatcccctagggagtgttttatacacattgacacctgggtcccaccccagag<br>attctgccttaattagtttgaggtgggcctgagcactggtagtttaatatctcctcaggtgcatacaatggtatattattcagcctt<font color="green"><u>AAAAAAGAAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAGAAAGAA</u></font>attctgacacatcctacaacatggatgaacctttaggacattatgctacgtgaaataggccagtcacaaaaaagacaaat<br>attgtgcgattctacatatgttagatacttagagtagtcaaatccatagagacagaaagtagaacggtggctgccaggggctcggggagacatgaagact<br>tcttgtttaatggatacaaagtttcaactttgcaagatgaaaagtgttctggagatcggttgcacacaatgtaaatgtaattaacactactgaagtgtac<br>aggtaaaaatgattaagatggtcaattttatgtaggtgtatttctaccacaattaaaaataaatatttcaaaaaggaagtcattaaaaatatcttctcaa<br>gtgattc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	605	285	NA	intron:LAMB4:NM:007356:1/34
0	chr11	24749533	24749534	1000008	0	-	Ya5-MLS18; RIP_Alu_chr11_024_01	CTATGATGTGCTATGGAAGGTAGGT	CCTAGTCCTCATAAATTAGTAACCTG	SINE	Alu	Ya5	atgagacttattcactactgggagaacagtacggggaaaactgcccccatgattcaattatctccacctggcccccaccctttgacacgtggggattatt<br>acaaattaaggtgagatttgggtagggacacagccaaaccatgtcagtaattaagcttttatctccaaatttggaggtagtgtatttttcttaattcatg<br>taattcattagtactagtaagaacagacttgaatatggtcttaatatattctcaatatatgcaaagtcctggccctgtgttgtctttgtgaaaaatgtga<br>actatgatgtgctatggaaggtaggtttctaacttcaaggtatttgcatcatgttaagaaaataattctgagaaatgcaaagttaaa<font color="green"><u>AATCACATGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AATCACATGAATA</u></font>gatacgatgccatgtatatacataagacactataacatacatgcacacactattgagtactccatcattggtactca<br>caacttgtttctcacttattcaatagccttcaatgatgacctactgtctactaaagctggttatcatggactataactctttattaagaaaggttgcctt<br>taatacacaggttactaatttatgaggactaggttctgcaatgtgaaagctttctatagtatcaaatctatatttcccatgaaaaattaaagcagacaaa<br>taaaaataaacaaaatctgaaaattcattgcggctctaggtcagatatgacttaggctttactattcagacatgatctgtgcaatatgtggatacaggaa<br>tttgttactt	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	62	631	309	NA	intron:LUZP2:NM:001009909:5/12
0	chr1	179124189	179124190	1000009	0	+	Ya5-MLS09; RIP_Alu_chr1_177_01	AGATGTTGGACGTTGGCAGTAAG	TAATCAACTCTGTCCCACATTACCA	SINE	Alu	Ya5	cgttggcagtaagccgcagcaaggcagttaggaaagtacgtgagcctgatgacgcgaaggtgatgcctccatctgtccgcttagtggttattaaattgct<br>gggaaagacctgcctttattttcctatcatcttttccccattactttgcattattcaggaaataattatttattcccaaatgcagttttctaagcagtga<br>ccacaaaaatttcttattctaaggaaaataattaagaaaataaccctatctgtggcattgttttaaaatgtgggatacaaatctggtaagcagatttcag<br>gtcattattgttttcttttaatggtttacatgaaattttcctctcaaaaaacaagtacctcttactgtataacatttgagtttttaaaattgagatagca<br><font color="green"><u>nnnnn</u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNN</font><font color="green"><u>nnnn<br>n</u></font>tctgagagaaaaaaagaaagttgaatttgtagctctctcaactacaaaatcaccacacttttctcaaatctaataggaattcagtgtcattacagatac<br>ggtctctagtgaccaggtgaagacaattgaagctttggtagaacttctgcaaaagttaggtaaagaagaataaatccaatttatcagctttgttcatatt<br>ctttttctgagtgatctaaatttttcttgcttgtgatcattagctaagacaaggagtgttaaaggttttctaaatgcaaacacatacgtttctgcatttc<br>agaagtcagtcttgatagtaaatcctacaaactctcaactttctgcattgtattttaagtctatacaatgttagagcacatggtaatgtgggacagagtt<br>g	Other	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	incomplete repeat sequence TSD unavailable	57	1134	813	NA	exon:3UTR:XPR1:NM_004736
0	chr5	77084116	77084437	1000010	0	-	Yb8NBC489; RIP_Alu_chr5_077_01	CACAAGGATGTGGATTTTGCT	TGCCTCAGCCTCCAAAGTAG	SINE	Alu	Yb8	catgactttggtaatctttggtaaggttaatttggtaaatttgatctcaaaattctcttcagtagtttaaaatcttaaggtcatgttttgttaaattaaa<br>acctcatttttttttctcccccactgggaatttgggttcttaggagttaggtagcaggagtgtagaacatgttttcagtgaagtttataaaacacaagga<br>tgtggattttgctaaagaaaatgtaatttttttttaagagttgctttaaaataaagaaaaaattaggccgggtgcggtggctcatacctgtaatccccgc<br>actttgagaggctgaggtggacagattaacttgaagtcagtagtttgagactagcctggccagcatggtgaaactccgtctctatt<font color="green"><u>AAAAATAAGCCGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAGAAAA<br>ACAAAACAAAACAAAACAAAAC</font><font color="green"><u>AAAAATAAGCCGGA</u></font>catggtggcatgtgcctgtaatcccagctactttggaggctgaggcagtaggatcatttgaacc<br>tgggaggcggaggttgcagtgagcggagatcagataaaactaaatggataaaaagaaaaaactaagccagaaaggaaaatcggaaggaaggaaggaaaaa<br>attatacagataaacctaaatggataaaaagaaaaaactaaacaaaagttacctctgagacctgtggttacagagaagatagttaatgtgggggaagggt<br>aaaaccaagtaactattaaaccatatggtataatgtaaacaaattgttccatttcgtaggctggtatcatcagcttcctgagaaacctttactataatgg<br>attgtaaaaataactactttaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	591	255	NA	intron:TBCA:NM:004607:1/4
0	chr17	6363100	6363414	1000011	0	+	Yb7AD84; RIP_Alu_chr17_006_01	ATCCAGCCTTGTTTACAAAT	GAGTAAATGCTGGCAAAAAT	SINE	Alu	Yb7	tagaactgattaataaaagtaagagctatttctttgaaaagaccatcgaaataggtaagcctttggcaaaacttactaagaatgagagagaaagagaaag<br>atggagggatggggaaaaacacaaatgaacaatgaggggaatgagaaagaagtcataactttcggaagttaattgttttcaacttgatgaagggcatttc<br>tggaatcctagggcgagggccatgtttgttggtaaaacattggaacgtttccatcacagcactacagtcaggatccaaccagaaagcccgctaccgcttg<br>tcactctgcattgacctggagatcccatgcaatgcagtttaaaaggaaaaataagaaaggagagtaaatgctggcaaaaatataactgttaagatttgta<br><font color="green"><u></u></font><font color="red">GGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCGTCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u></u></font>ttagctgagcgtggtggcgggcagctgtagtcccagctactgggggactgaggcaggagaatgacgtgaacctgggaggcggggc<br>ttgcagtgagccgagatagcgccactgcactccagcctgggcgacagagtgagactccgtctcagaaaaaaaaaaaaaagatttgtaaacaaggctggat<br>gcagtggctcacacctgtaatcctagcactttgggaggccaagtcgggcagatcacttgaggtcaggagttcgacaccagcctggccaacatggtgaaac<br>cccatctctactaaaaatataaaaagtagccaggcatggtggcgggcgcctgtaatcctggctattcgggaggctgaggtaggagaatcacttgaaccca<br>ggaggcagaggttgc	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	NA	NA	NA	intron:PITPNM3:NM:031220:3/20
0	chr17	14358668	14358669	1000012	0	-	Yb7AD3; RIP_Alu_chr17_014_01	AAGAAAAACAACCACCTTTG	TGTATTCAAGGGCAAGAAAT	SINE	Alu	Yb7	aaactcccatcaatcactgtgaaacacagtccagaatgaagaaacaacttaaaaacaggtgtgaacctagcaaccatctcaaggctgaagcacaggcaat<br>tttgcaacacctccctatccccaatccagaatgtctttttaatccggtttacaggctggaattctactaaagacgaactcacagtcaaaaattacaaaac<br>acggaagaaacactccgtcctaaaacttagtcagtagatgagaaaccaaaccataatacacccaaggaagtagaataaatctaaacagaaaattaaatca<br>atatcttaacgtttgttaaaagaaagataaaatgaagaagtggactttgtattcaagggcaagaaattatcatttgaaaaatagtttt<font color="green"><u>AAAAGAAACAAG<br></u></font><font color="red">TATTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAACAAG</u></font>tagaaatcttgc<br>aggtaaaaaaatagtaaatataatttaaagctcaattgagttttatctaatataatataatgtccatgaaggcaaaggtggttgtttttctttttgtctg<br>ctttgtttattgtttaaaccctaacacttagaacagtacctgatacataatttgcaatcaatatatgtatttttaatggataaataaattagtgggttaa<br>atggtagattggcagagaaaaattagtgagttagaaaatagaactaaataaaccacacagaaaacataccaagagacaaaaacattaaagaaagaaagaa<br>agttaagaggcctggacaagagaaagcaatactgtatcacaacattcatctaataaggattccagaataacaaagt	Other	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	NA	NA	NA	intergenic
0	chr9	41833169	41833170	1000013	0	+	52556; RIP_Alu_chr9_041_01	CACAGGCTCCTCACATTCAGCATG	GGGATGCTGAGGCAGGAGAATCG	SINE	Alu	Ya5	tgttttggggttccaaatagaaagcatcttgaataacgtagattaaataacagtaaatgcaaatgcagacaccaaacatatcctagaggaatcttggaga<br>actttagtcttgctgctttttatttttacatctcatcagcagtactgacgtttcatcaggatcaatggagaattaacaatggagttaatattttttccct<br>ttattagtttggggaaaaggtagatctcataatctggtgtactccttttggaagcttttcatattatcctatcctttatcacaggctcctcacattcagc<br>atgtcctaaaccaaatattttttctcctacccattgactcctccccctatgattctcatcattatcaatggaatttgactt<font color="green"><u>AGAAATCTATTCCTTTCTC<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGAAATCTATTCCTTTCTC</u></font>ttctccttccctatagtcaatcattaaatcttgtagatattatctcctatcactgatcatttgatataact<br>caccaagtttcactaataataatcaaagtggtaatacatttgacaaactccaaaaaaagataatttttttctttttctttttatatggggtctcgctcta<br>tctctcagtctggagtgcaatggcatgatcttggctcattgcaacttctgcctctggggttcaagcgattctcctgactcagcatcccaagcagctggga<br>ctacaggcatgcgccatcacgcccggctaatgtttttcgtacttttactagagacagggtttcactatattggctaggctggtctcaaattcctgacctc<br>aagcaatctg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr5	174693412	174693413	1000014	0	+	2684;1104685439578; RIP_Alu_chr5_174_01	CAGCGGGCAGAGGTTGCAATGAGC;NA	CTCAAGAGATTCTGGTTCAGAAGTAC;NA	SINE	Alu	Y	ggattttcagattcagctcgtctaagatggggggaaaggggccaggcatggtggttcacgcctgtaatcccagcactttgggaggccaaggcgggtgaat<br>cacctgaggtgaggatttcgagacctgcctggtcaacatggcaaaaccccgtctctactaaaaatataaaaattagccaggtgtgggggcatgcgcctgt<br>agtcccagctacttgggaggctgaggcaggagaactgcttgaacccagcgggcagaggttgcaatgagctgaggtggagccacttcactccagactggca<br>gaaaaagtgagactccgtctcaaaatgaataaataaataaatagataaataaataaaatggggggaaaggggagtgaacttgtt<font color="green"><u>AAAAATGCCAATTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAATGCCAATTTCT</u></font>gagtccaaatctggtacttctgaaccagaatctcttgaggtgggtccagtatctgcatcactaaaaaagctcct<br>caaatgcattttatgaacagattattacacacaaccccgccctccagagctcatggtccagcactggtagcagacaagggagcaaggaccatgcccatgg<br>atatggccatgacaggacagcaatgagaacctatccccagggccagcccaggccagagccaggaaggacctccaagaggaagtgatcttaagcggagcct<br>gaacagggataggcaccaaccaggcagagtgatgagagagtgtctgccatctgccaggggcagaaggagatgtggtacatttggggaaaggaaaagaact<br>ctgagagtcc	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr1	120411631	120411632	1000015	0	+	Ya5ACA707; RIP_Alu_chr1_120_01	TCTCTTCACCTATGAAGCAGGAC	CAGAGGTGGAGGGCATAGTT	SINE	Alu	Ya5	attggccacaagccaaacacaggaacactcaaaagtttagaagggtgtgctgcaactggtaccttagcaaaacacaataataaattaagaggattcaaga<br>agccttcactgtagactctaagaagatttaagatttgtaccgagaaacggcttctaaatctcttctactgcattagtttagcatctaaagaacacctgtc<br>taaaaatcaaaatatctaaatcctatcctttgagtcaacttgactaacactcaacttgactacctaaaagctagctaataatcgcagcacctcagcagag<br>cagaggtggagggcatagttttatgcactgagatcctataataaaagaagccctatgtgtcagagtaatcccatttctgatatcatattattt<font color="green"><u>AATACTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AATACTT</u></font>aatttttcaaatcactttacaattatatttattattccctacaattctctaaagcaggttattcctttagtcctgcttcatag<br>gtgaggagactacatatcatgaagattaagttatttaccaaaacaagttaatgatagaccaaggattattaccctcagactgtctcattgatcatactcc<br>tctctatcctaaagctacacttaaagctttcactcaaagaaaaaggaaaagcaaaaacaccatcatatatgctctttattaaatgcttcagaaacaacgg<br>ctctgcttcatcactacaaagcctcctggtccacttctgaaattcttagtgacctagacgtgtacgaaatttgaactttccaagaagtatctagttggtg<br>ctgaacaacc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	189	NA	intron:NOTCH2:NM:024408:1/34
0	chr7	103643686	103643988	1000016	0	-	Ya5ACA1598; RIP_Alu_chr7_103_01	CCCAGCTGGTTTTTCTAAATG	AATAGGCGAGAGGGAATGGT	SINE	Alu	Ya5	cccacttgggtcatttcttatcccataaagataaaactaaatctataaacctgctccttatttttccatctggcttttcatctgtattccttatttttta<br>tttcactactggcaaaacctaaaatcacctatgtcagaaacctaaatgctagtctctatgactcctccctccatctcttacaaacagctactgagttcta<br>taaaatatacttccaaatttctctcagacttagcccattctcagtatggggtagtaaaaagattaagggctttaggattaaccagatctaagttcaagta<br>attacgaactataaacctttggataaattacctaacccagctggtttttctaaatgtgaaacaagaatggtatctctattataat<font color="green"><u>ATTGTTAAAATTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGATATCGAGACCATCCCGGCTAAAACGG<br>AGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTATAGTGGCGGGCGCCTGTAGACCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>ATTGTTAAAATTTAA</u></font>atgggagtaatatatctatcacagtgtcagccacattatgtttaataaactttaattaccattccctctcgcctattcccat<br>tgtttataaaggccatttttttaaattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtg<br>tgctgcacccattaactcgtcatttagcatgaggtatatctcccaatgctatccctcccccctcccccaaccccacaacagtccccagagtgtgatgttc<br>ccctttctgtgtccatgtgttctcactgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgttcttgcgatagtttactgagaatga<br>tgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	142	NA	intergenic
0	chr14	78416054	78416357	1000017	0	+	Ya5ac2404; RIP_Alu_chr14_078_01	GTCAAGGTTCTGGCAGGAAA	TATTCACTCCCTTTCCCCCT	SINE	Alu	Ya5	ttttaattgggttatttgtttacttgctatgaagttgtttgaattctttatatattttagatattaaccccttatcatagaatgacgcattttaagacaa<br>ggaatgaatcttgtgaaagcttaattccctgtcctaattcctcaccctttacacctccttgcactagacacactcatttacaaactctatacttctactg<br>tattcctatgactggagggtgtttatgagaaaagcaggtgagccttagagtaccagtatatcaatttttttccacagtaggttaagggattcatggaggg<br>accccccctgccccccaaattgatttgccttttgcattagtcaaggttctggcaggaaaactggtgacactctcaaatgggggtaataatat<font color="green"><u>AAGAATTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATTG</u></font>acccatttacaatagtataggcagggtaagtctgttgtcagggaagccaataaaggatggagaagcacctttttacccattacctctc<br>ttaggcttgaagggggaaagggagtgaatatttattggaacaaagagccagagatgtggctgtaactgggagagggcctcccaataggatctgaaaagtt<br>cagtagtgaaatgcaagcactgcaacccgaggcctggcagggaggagaccaaagaaactgatatcccaatctcacttttcccactccctggctttctgcc<br>aatgactcccatttgatgcagtccagaaagatgggcttcctagagagcagagtagggtggaaaatggattcagagggccatgaagagtatcagagtatca<br>agaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	179	NA	intron:NRXN3:NM:004796:7/17
0	chr8	72319395	72319396	1000018	0	+	EYA1; RIP_Alu_chr8_072_01	NA	NA	SINE	Alu	Ya5	agcatcggtcctaatacagtaagagtctgacataacagtctcaaagaaaaaaagaatctgacataacatatgcaagtgttacgaattatgttggacatat<br>cttagtggtgattatgtaactgagaaatatgtggcttctgataatcaacaaagtttaagattcttgaaatcaaattttaatctttactactggtcatgta<br>ggatctaactctgaaaatcaacagccaaagtaaagcaaaatagaaatcccataaaggcaaaacacattgccatattaccaacaaacctctgtctcactat<br>tccaattatacattaaaaaataatatcctatctttattttaaaaccaatcacctattttcagacatgcaaaaatatgtattaaaaattagaac<font color="green"><u>AATAAAT<br>GTGTGTCTG</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAATAAATGTGTGTCTG</u></font>tctgccaagttgaaaatcatttcttccattcgcagtccaagggaaactgaagtgggtggat<br>cctaaaataagaatatgacaggtgaagaacatgtatacttcaggttacatgaaagagagtgtctcattaagaggaagcaggcattgggagaggctgaaag<br>caagagacacagagagagacttgggcaacagctgcttattttagtgtgcatgacttattctgtgtgcaaacttcagggacttattttataaaaagagccc<br>caaatgttgatggtgctttacacactgaagaaaaaactctttctttacttttttaaaatttaaaatctagggttacttagacatataaaataaaggaaat<br>tcaactttttatgtctatttcag	Other	<UL><LI>Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, Vincent C, Levi-Acobas F,Cruaud C, Le Merrer M, Mathieu M, Konig R, Vigneron J, Weissenbach J, Petit C,Weil D. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in theeyes absent homologous region (eyaHR) of EYA1. Hum Mol Genet. 1997 Dec;6(13):2247-55.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9361030">PMID:9361030</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Brachio-oto-renal (BOR) syndrome	exon:CDS:EYA1:NM_172060:10/16	
0	chrX	49742082	49742083	1000019	0	+	CLCN5; RIP_Alu_chrX_049_01	TCCATCTTCAATTTGTTTTTTCCTTC	CGTTTTAGCCGGAATGGTCT	SINE	Alu	Ya5	ctttcttgaagccaaagaagagtttgctcataagaccctggcaatggatgtgatgaaaccccggagaaatgatcctttgttgactgtccttactcaggac<br>agtatgactgtggaagatgtagagaccataatcagtgaaaccacttacagtggcttcccagtggtggtatcccgggagtcccaaagacttgtgggctttg<br>tcctccgaagagatctcattatttcaattggtaaggatttcagaaaggggatagtggaatccactgtggaactcaataaatatgcctgaaatgggggaag<br>acagggaaggggggactggttaggagccagaaggatagagctagcacgtccatcttcaatttgttttttccttctgtttgaata<font color="green"><u>GAAAATGCTCGAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATtCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTaGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATGCTCGAAAGA</u></font>tagcacttccatcatttatttcacggagcattctcctccattgccaccatacactccacccactctaaagcttcggaacatcctc<br>gatctcagccccttcactgtgactgaccttacacccatggagatcgtagtggatattttccgaaagctgggactgcggcagtgcctggttacacacaacg<br>ggtaagaagtcttgagtgaagtcaaattgaattgtgggagaaagagaatgcagagatagaaagaagtagaaagaagtagaacccagtttaaatgaacatt<br>agtagcacttttaggacttcttgaagctctgagatgaaagtggataggtttttttaaatcataattaatgtaaagggagtttgggaaagaacatgtgtt	Other	<UL><LI>Claverie-Martin F, Gonzalez-Acosta H, Flores C, Anton-Gamero M, Garcia-Nieto V. De novo insertion of an Alu sequence in the coding region of the CLCN5 generesults in Dent's disease. Hum Genet. 2003 Nov;113(6):480-5. Epub 2003 Aug 29.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14569459">PMID:14569459</a>.</LI></UL>	E:Insertion-specific detection:PCR	estimated sizes for PCR products, polyA length unknown	60	650	300	Dent's disease, low-molecular-weight proteinuria, hypercalciuria, nephrocalcinosis, nephrolithiasis	exon:CDS:CLCN5:NM_001127899:14/15
0	chr6	141367415	141367726	1000020	0	-	Yb8NBC576; RIP_Alu_chr6_141_01	AGTCTTAATGGGCGCTGAGA	AGTGCCTCACCCAGTAGCAC	SINE	Alu	Yb8	tttgttcaacagaactgaaattgctttacttaacttttatgcaaatgtaactatatgcaataaaagaaatttaaactcccgaacatattaaatcgctcta<br>gaattttggatttttataactcttaatgaaatccataatgatatacaaaagtatatcccaagggattttaaaatttctaaatgttattgtcacttagaaa<br>atcctactttttaaaaagaccatgccttaattttctgataggatactctttttgagaaatgtctacacaataatagcatgtacactaaggtatgcaaaag<br>taaacaaataagggattattatatatgtttcaataggaacaacaaatatatttttcaaaggccaaaatttctatttataggcaatt<font color="green"><u>AAAAAGTGGATTTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAAGTGGATTTT</u></font>aagtttgcccactagttagttcccctggtcttcaagagtaagactacctcaatagagagctccactgggaagcc<br>acatgctctcatcactaaaattgtccaaataatgaactgatatattaatataatatgctgaaacaacaaacattcgagaaaacaagagaaatactgctga<br>tttgagacaacaaaattagaacttggatcttttcattaaataaaacattttttagatgatgttttcaacaagatttgtgtaagagagggcagtaagattg<br>ggtacaaaatcataggctaaatatctcttttgattccttgagagagagaagacaggtgtgatgtggatttcatggattttagatcattttctttcttcga<br>cattgactccaa	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	475	149	NA	intergenic
0	chr10	123266987	123266988	1000021	0	+	FGFR2Ya5; RIP_Alu_chr10_123_01	AATCATTCCTGTGTCGTCTAACC	AAAAACCCAGAGAGAAAGAACAG	SINE	Alu	Ya5	gagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttatccctg<br>agggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaaccaagaaa<br>agggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaatagaattacccgccaagcacgt<br>atattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgttaacaccggcggccta<font color="green"><u>GAAAACAAGGGAAGCA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAAACAAGGGAAGCA</u></font>aaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggggctt<br>cagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccacaggcc<br>cgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttggtttg<br>catttaggggtggttttccaaaagtatggtgcccagaaggccaagctggttctggtcctgttggctgcagactcccaccaagaggaaagggtagttctat<br>ctaaattgct	Other	<UL><LI>Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR,Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO. De novo alu-element insertions in FGFR2 identify a distinct pathological basisfor Apert syndrome. Am J Hum Genet. 1999 Feb;64(2):446-61.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9973282">PMID:9973282</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	590	225	Apert Syndrome	intron:FGFR2:NM:022970:8/18
0	chr10	123266882	123266883	1000022	0	+	FGFR2Yb8; RIP_Alu_chr10_123_02	AATCATTCCTGTGTCGTCTAACC	AAAAACCCAGAGAGAAAGAACAG	SINE	Alu	Yb8	gagaataaattactttgaattttaccaaagtaatggcaacttgttccttaagagaaagggggatgggctaatttatacattggctcaatgactcactaaa<br>aatatgagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttat<br>ccctgagggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaacca<br>agaaaagggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaata<font color="green"><u>GAATTACCCGCCAAG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAATTACCCGCCAAG</u></font>cacgtatattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgtta<br>acaccggcggcctagaaaacaagggaagcaaaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggg<br>gcttcagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccaca<br>ggcccgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttgg<br>tttgcattta	Other	<UL><LI>Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR,Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO. De novo alu-element insertions in FGFR2 identify a distinct pathological basisfor Apert syndrome. Am J Hum Genet. 1999 Feb;64(2):446-61.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9973282">PMID:9973282</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	62	575	225	Apert Syndrome	exon:CDS:FGFR2:NM_000141:8/18
0	chr17	26687655	26687813	1000023	0	+	NF1; RIP_Alu_chr17_026_01	CAGATCTGCTTGATGTTGTACTAAG	TGACAGCAGCTGACTTGACTTTGC	SINE	Alu	Ya5	tctcttaatctctgaaggagtcaaatgaatatactcatcctttcctggatattttataataaattgtatttactgacaggcctgtaaataaaatctagta<br>tttttgaggcctcaggtaaaatagaattttcatattgattaggctgttccaatgaatattttttaattaaaaattaaattggtagagtgattaaaaacat<br>gttattttccttcttcaactagattacagatctgcttgatgttgtactagacagtttcatcaaaaccagtgcaacaggtggcttgggatcaataaaagct<br>gaggtgatggcagatactgctgtagctttggcttctggaaatgtgaaattggtttcaagcaaggtaatcacttttcttttgccttctgtactatagcata<br>tctgttttatcatcaggaggttttttgttttgtaattacttttaaattaaactgaacttttttgtgctaaaactttgagt<font color="green"><u>nnnnn</u></font><font color="red">GGCCGGGCGCGGTGG<br>CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>nnnnn</u></font>cccatgtttttttttttaaaaaaaaaaaatcctgcttctttacaggttattggaaggatgtgcaaaataattgacaagacatgcttat<br>ctccaactcctactttagaacaacatcttatgtgggatgatattgctattttagcacgctacatgctgatgctgtccttcaacaattcccttgatgtggc<br>agctcatcttccctacctcttccacgttgttactttcttagtagccacaggtccgctctcccttagagcttccacacatggactggtcattaatatcatt<br>cactctctgtgtacttgttcacagcttcattttagtggtaagttctaggaaaggaatttgtgtttaccagttcctttctccattttacttcacctgatca<br>atatagattatcttatttatgtttgtgctctaacaccaagttgctaatttaagcctccagtaatgacatgaaatattaccaaaaagaaaata	UCSC	<UL><LI>Wallace MR, Andersen LB, Saulino AM, Gregory PE, Glover TW, Collins FS. A de novo Alu insertion results in neurofibromatosis type 1. Nature. 1991 Oct 31;353(6347):864-6.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1719426">PMID:1719426</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown TSD unavailable	65	800	480	Neurofibromatosis	exon:CDS:NF1:NM_001042492:42/58
0	chr11	82271187	82271484	1000024	0	-	Ya5ac2084; RIP_Alu_chr11_082_01	TCATGGAGTTGAGGCCTTTT	CACTACCTGGGAGGACCAAA	SINE	Alu	Ya5	ctactctggatcgcattgctttatttatttatatgttggtatcctgttagactgtgagcagcctgagtgctaggactccacccatcagtgtatctcagtg<br>tgtgccttcatcagctcttcagacaaataactggctcaagctgaagttattcttctaccattagtacttggttttgtcaacagtctgccagtattgtact<br>accaatatggcatagacactggccagtgggaacagaagctagtcatggagttgaggccttttgaagtatcatcgttctttaggtctggagatctaaaaaa<br>gggtctgtggcagtagggctgtgtgtgtgtgtgtgtgtgttgcacaggtagtttttctccaactcatatggaaatatttcagtatttt<font color="green"><u>AAGAACTGGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAACTGGCTC</u></font>agtatcagctttggtcctcccaggtagtgagtgcctacagaatgggattctgtctgtactgcttagtgtccctaatatggatatctcagc<br>acaactcaggtgtccaaaacaggtttaacttctatagcaaatgttaatgttattacataacacttctttttaaaacttctctgaatttttcacattacta<br>tgaatactactgcagttgaccctagaacaacatgggtttgaactgcacgtgtccacttataaacgttttttttcaatacatctcttctgtctcccctttc<br>acctcctccacttcttctgcctctgccacccctgagacagcaagaccaacccctcctctttctcctcctcctgttcagccttctcaaagtgaagatga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	497	180	NA	intron:PRCP:NM:199418:2/10
0	chr12	57344522	57344826	1000025	0	-	Ya5_518; RIP_Alu_chr12_057_01	GCAGTAAAGGAGCAATTATCACAG	CCGGAATAATGTAAAATCACAGTGC	SINE	Alu	Ya5	gtaagagcaaagggtagggaaagatgaatcaataacagcatcaaactcacagatgcaacagctgaagtggcatggggctgcaaataacagagcatcctgt<br>agaaggaatatggtctagaaagtgagggctggttatcagagggagatatgaaagaagagagagtggggttctgcggggcagagagagatactgtggaaca<br>aacttaaacttttcactaatagtacaaaagtagtttattttaaattacaatggaaatttatatttgtaaattaaaatagtgctatgtaaaaatatactta<br>gaaggtcatatatgctttaagagaaaaaaaaacatattttctaggaactataaattaccggaataatgtaaaatcacagtgcttc<font color="green"><u>AAAGAAGCAAATGTC<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAGCAAATGTC</u></font>tttagatttgctcatttccactttaaacatttgttttcctagaacatgtgtcctataaataatctaacacccaatataaa<br>atttggcaagaaatatagcccattaaatttatcctattgtgctttctttatctgtcacatattttaatgtggttttattaactgtgataattgctccttt<br>actgctaatgatagtatgatactgttaacaatcaacttccaaggtgatagtctttatgatctgcacctccctcagtaattgcactaaaactgtgtgcctg<br>actcttgagttaaaggacacttgggtttcttgtacttgagtcaatttggtctcctttccagatggtaaattaaggactatgctatcctcttactccaaat<br>ttcca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	548	228	NA	intergenic
0	chr12	90989647	90989952	1000026	0	+	Ya5ac2221; RIP_Alu_chr12_090_01	ACAGCGGGTAGGGAAACTCT	TGGCTACATATGGGATGTGG	SINE	Alu	Ya5	agtagattttctcctggggaaaccagtagcaatttatcttgttcttgctctactgctggcatacaggaggttgggcatttaatagacagtcatctgccag<br>taggaggtaataattgttttttagattaaaaacaaatgaaatatgaagggagttactgccatataggaggaattggagccaatgctcaagtagtcttgtc<br>tagagccaatgtaagaacttctgttggaaaactacacttttatgtatatgtatgagtttctgcatgtgcatgcatatgagtgctttagcgtcttgtagat<br>gtgtgcatgacagcgggtagggaaactctggaaaaatagccagtgaagacccaaagcaactcttattttctacactcacaagtactat<font color="green"><u>AAGAGTTGGATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTTCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAGTTGGATC</u></font>aatttcttgtgcttaaaattgggttttattttgtttatcttttccacatcccatatgtagccattttctaggaaaaaattac<br>actgatagcaacaaaataatttttcaaaatgtatataagaaacagtgcaatgtaagacatgtagaagagagccagaatatgccttggtggattgatgaga<br>atgctaagcaacgaaagacattcatgctgcaatctatacaactaagcagcctgaaacctcctccattattcaagtttgaattcagaaagaagacaatggc<br>cttattcagctccagtcaatcctagtgttatgcattgaattatttccccctaaaagttgttgacatgctaactcccaatacctgcaaatgtaactttact<br>tgaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	472	154	NA	intergenic
0	chr14	38087735	38088034	1000027	0	+	Ya5ac2370; RIP_Alu_chr14_038_01	ATTGCTCTAGCCACGCACTT	AAAGAAACTGACGGGGTCCT	SINE	Alu	Ya5	gtatctaagacatactttatagaggctacaatttgaataacaggaacaaagaagaaataactcctttgtccaccttcaaaacttttgatacactgcaaga<br>gcctgtaatttgtaaaccatttaatctcacagggggaacctaggattctcagagtccgctccatcagggcaactatttacagcagactttcctcagatat<br>acttgttcactttgtgctactccctttgatgtaggtataattaagctgattgcagccccagttggccactatgttcaaagaaaaaacccagtagcaattc<br>aaaatgattgctctagccacgcacttttctctattccttgcgtaccttgaggatggttgtatagccccaaggcacttgctgtt<font color="green"><u>AATATTAGGGAAGGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AATATTAGGGAAGGTTT</u></font>tattatttcgtaaatctccatcagccccttcctctctcttcgtagtggctttttctaggaccccgtcagtttcttttgacagt<br>catcaagttgcttaggatgcagaaaagcctgcctgccatcattccccacatctgttcttgtaactacattctcttccacatgtgtttcctctctgaggca<br>gtcgagttgctgaagctcagtgagctgaggtggattctaaattacgtccagacctataagtcaactaaataaaggaaatgtaagggggaagaaagtaaat<br>cttcaattcttcttagtaatttttaacttcagagaaataaaagaacacattgtgataagtttgacatcactagatgaaaaaaggccataagatatatgtt<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	487	170	NA	intergenic
0	chr16	26290912	26291233	1000028	0	+	Ya5_464; RIP_Alu_chr16_026_01	TTGGTCAATATCGCTCATGG	TGGGAGTTAGGAAAAACTTGG	SINE	Alu	Ya5	ggaggggagggaggaaggagacaaaagacaggaagtggggagagagagaggagaggagaggaaagaggggaaaagatgaggaaaggagagagagagaaaa<br>aataaatagctttttttgtttgtataatctgacatcttgtagacagttttttagagagatcaattctgtccctttgagttttattttaaaaattagagaa<br>ataggctatttggctagtctgcaagacttgtcatagcctctgggtttactgggcgattggcaggccatagtgtaaataatgacttagaactactggttca<br>acttctcttcaaaaataaggaactaggatccaaggtgaggcccagtgacatacagtgacttggtcaatatcgctcatgggaaggcagtc<font color="green"><u>AAAGCTGTAGG<br></u></font><font color="red">TAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGCTGTAGG</u></font>taggaccaagtttttcctaactcccagttctcttcatcacatgatagaatcaggagagagctcttct<br>cctctgtcacccatcagtcacctctgaccttgctatttattcccaagagtcagagaggcagagtgtaccctctgccttcggagatatcaaagtcatcaaa<br>cctggacaagtgaaagctttggctgaccaggggcaggggaggttgggtgtatctggctgcttacaattcagaagttgacatcagctcagctgcttgcatg<br>ctgtgctaaatctcaacgtgtatagactgaaaatcacccagttactttgcgaaaacagcagtttaataagattaggaggagttgagaacacttgttacgt<br>tcaaggcaataaaatgaaaagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	57	400	67	NA	intergenic
0	chr19	35709190	35709490	1000029	0	+	Ya5NBC349; RIP_Alu_chr19_035_01	TCAAGAACTGTGGGCCAAAT	GGATGTTGTCACAGCAGCAT	SINE	Alu	Ya5	tctcaccaaggccaggttcttaggtgaccctgctcagcgacacgaatggtctctggggtgggctccagcccacagtccctgtcccacagagaagagacag<br>gtgtgcagagcccaaagagacatgtcacacctgatgtcttgtcccaggtcaattctgtgaatcccaaaccttgcccgctgcatccagggttgcagtctct<br>agcctggggactgagagtacctgcccacagccagcccatagccaccccttggggccttggcaagatgtggcggtctgcggatgacaggggatgttgtcac<br>agcagcatcacatggtgccagagggcagagaccccatgggtggcctaatccccagcagggagtttcacagactccaccaacaatt<font color="green"><u>AAGAACAGGTTCAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAACGGGTTCAGG</u></font>gcttgggaaaaccagaaacacatttggcccacagttcttgatcttgaagccctggtatattttaaggaaaatgtaatccatgtg<br>tttctgattcattttcacttaactcatcaaaatgttgctttagagaaggtatttgaaatcctagtgtcttatatttctccctttttctttttttgagacg<br>gattttcactctgtcacccaggctggagtgcagtggtgtgaactcggctcgctgcagcctccgcctcctgggttcaagcgattctcttatctcagcctcc<br>cgaatagccgggactacaggtgcctgccaccacacctggctaatttttgtattcttagtagagatggggtttcaccatattggccaggttggtctcgaac<br>t	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	469	53	NA	intron:ZNF536:NM:014717:2/5
0	chr20	31798801	31799110	1000030	0	+	Ya5ac2698; RIP_Alu_chr20_031_01	GGTGTCATTTCTGCCATCACTAT	CTAGCAAAACTCACAGTCAAGCA	SINE	Alu	Ya5	tgaagttgagatgcctgccaacctttaaacggaggcagtgacaaagtagacaatgtagatttccaagtccggaggccagagcagaggacaaggctggagg<br>catctggggaagcttccagagtcctcagccgaaaacacggttctggagcaaagacaccctggatagggggctcatagaaagactaaaggatccctcataa<br>aggaggctgggcatatctcaggatgccaggtcaaggggtcagattttcaactggcttccttttctttccttatccctttagaacattatcttcattcatt<br>gtataggtgtcatttctgccatcactatgaaagcattcaccccagacccataggacatatagactgaaacaggcatcttctggcataaa<font color="green"><u>ACAGTCATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GGACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAC</font><font color="green"><u>ACAGTCATTTT</u></font>tctcactgcttgactgtgagttttgctagtagaaaatattcccctcaccatctcttacctttttttttttttttttgag<br>acaaggtcttactgtcgctcaggctggccttggctcactgcaacctccatctgccaggttcaagtgattctcctgcctcagcctcctgagtagctgggac<br>tacagacacccgccaccatgcccagctaatttttgtatttttattggagatggggtttcactgttggccaggctggtctcgaactcctgacctcaagtga<br>tccgcctgtcttggcctcccaaagtgctggaattacaggcatgagccaccgtgccacaccagatattcttcttgacctaagatacttgtggacttcatgt<br>ggacatgtgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	447	127	NA	intron:ZNF341:NM:032819:3/15
0	chr10	35633229	35633545	1000031	0	-	Ya5_541; pAlu10-35743364; RIP_Alu_chr10_035_01	GGATTGGGAAAGGTGTTGAA	TGGCTGAGAAAACCTGCAAT	SINE	Alu	Ya5	catgacacttgtatattaggctcctaaatactgtgcaacacggcaacagtgatgagaatcactactcttagaccacacttgaattagtgtctcttccatc<br>cacccacgttttttggctcttcttcctctgatctcccctgccttgaggctcagcactccccctaacaccctagtggttctcaacctgggcaattatgccc<br>ccaggagacatttttggttgttgcaactaggggatgccactggcatgtagtgggtagaggctagggattctgctaaacatcctacaaggcacaggacagc<br>cccccaaaacaaaaatgatctagctccacatgccaatagtactgtggctgagaaaacctgcaatatgctaaccaaaccacttttaat<font color="green"><u>TAAAAGGAGAAAA<br></u></font><font color="red">AAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAAAA<br>TAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAAGGAGAAAA</u></font>aagccttttcaagatcttacaacggctcttattagattataaattgtaacctcctcagccttactttcaa<br>cacctttcccaatccatttctaacctacctgtcacctgaactgagcaaacctatgctgagctcccccatgtgcaggaggtgcaaagctactgaaagacga<br>agaggggttggtgctttccagaagcccattcacgggtgcaggagacggagaaactggagcatgtggctagcacccagcaggtatcaggaatggtctttcc<br>tttcttcctaattagctctaattccaggctgactgtgatgggtggataaagagtggtggatcttagtgttttccccacatcgtaatctgtgctcttgttt<br>gtcttttaatctattag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	471	141	NA	intron:CCNY:NM:181698:3/12
0	chr10	55628261	55628441	1000032	0	-	Ya5ac1925; RIP_Alu_chr10_055_01	TCGGGGAAAGAGGAAAAGTT	GCAGGAATCCTCTGCTTCAC	SINE	Alu	Ya5	tagatctgatttgaattttatttctcttttcattgaatcactttgttttcatcatgcaaataatacatatttttactggcttcacagctgctggtaaaaa<br>ctaatgatatatgatctgaatgtaaaatgtaagcttatttcattattatacaattttgcttttttcatcctcctcaccacctatatattgtgtgtgtttg<br>ggtgtgttcatcggggaaagaggaaaagttgtagaatttatgacttttcatagcatttttatgtcctggatatgacatgctggttattggctcacgcctg<br>taatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaacggtgaaaccccgtctctactaaa<font color="green"><u>AATA<br></u></font><font color="red">CAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AATA</u></font>attagatattaaaga<br>aagatggagagatacaagaaagagagaaaaaaatctgttcaaaatgccttgcatgtatgaactgctctgagcctgtaagagtgaagcagaggattcctgc<br>ttaaatcatttcaaggtcattgggttggaagcccatatggaccaattagttttaaacagtgaaaaaacaatgttttccaggcgtagactctacctcttgc<br>cctggtcagctgtctccagaaagcctgatgtgtgtcacaggggtaactcctaaaagaacatccatcgctcggcacaaattaatcacaactgctggatgca<br>gaaagacctcatccatactgatggtattagcagcatgcctggttatgtgagatggatacataatcccagacaggaccaaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	490	195	NA	intron:PCDH15:NM:033056:10/33
0	chr10	54688751	54688976	1000033	0	-	Ya5ac1926; RIP_Alu_chr10_054_01	TTTTGTGAAGAAGCCCTGGT	GCAGAATAAATGCTGCAACG	SINE	Alu	Ya5	caacccattaaatcagccttactaattgcattatgtctggacatatttatatatcacctatcttcactaggcatcgtagagtacaactttatataaagta<br>cctttctatatactatttaatgctttcaagtcctggattcagaattgtcttataccaaaatcagagccacactttcttatttcacatttgtttctaaaag<br>ttttccactatgtgttctacttttcatttattcatcttcttgttacctgattatacttttaggtacttccttactttctggcacaataaaaagttccatg<br>tttatcttgtattttcttctcccttgtccctgaatgagtcattttgtgaagaagccctggtttcttttaacatcgagtgacatttat<font color="green"><u>AAAACAAGATCTG<br></u></font><font color="red">GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGG<br>CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACAAGATCTG</u></font>agtgctagttgtaggtcttttcagtggacagatttagtaaatacacatatttgtccatgaa<br>cacagatatacccttatatctgtctctttgtctatcaaccatctatccatctttctctattcatctatctatcatacaactaggagttcactttgatacc<br>tctaaatttgattgaacgttgcagcatttattctgccttgttgatttctacatttgtaaggcccttctttgaaagtgagaaacctggcaactaagatccc<br>actattctcaatacatttatacttactggctcagtaccagtgtatgtacttacacttctagtttgaattgcccaaagttcatatcggacacactgtcccc<br>caatgatctccacctggtgggtctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	495	256	NA	intergenic
0	chr10	26807964	26808253	1000034	0	+	Ya5ac1939; pAlu10-26918096; RIP_Alu_chr10_026_01	GCCAAAAAGGAAATCACAATG	GTCTCCTATCCCAGCCATGA	SINE	Alu	Ya5	aggaaaagaaagaggcacttgggctggagatgtgctttgggggttggcagcatatgtatggtatttaaagccctaagagcaccaagggagtgagtgtaga<br>ccaaggctgaagagaaatgaggtcaggaaggatgaggaggaacccacagagaaggctggaaggagaagctggtaaggtagatagggatggagccagaatc<br>tctggggcctgaatcttacacaattttgggaggctcccttttaaaaagaagggatttttttctacttggggtgggagatgaagtctccctttaaaaaaat<br>acaaaattgtcaatgaaaaattaaggacaagagggaatatttatttagagccaaaaaggaaatcacaatgaatgaccaattttt<font color="green"><u>AAAAATTGACATATAT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG<br>AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTGAC<br>ATATAT</u></font>aacaaacatgtacatgtacccctgaacctaaaataattttttaaataaaataaagaaaaatatttaaaatcatggctgggataggagacagcaa<br>taatttataaagtgtataatttataaagtgtatttgttattaatcactagagatcactgaacccaaaaggacttaactgtgatactttactgtgaaaaaa<br>tagttttcactgcctaaaatgaaactctttattttacagcattattagaatatgcaaacatttgaaaaaaaacaataaaaataaaaattgacacgtaagt<br>gtatatatctaaaaagcaacattgtaatctttatgatgattaaataacttgctgatgtatttttgctacgcttttggctgcatattcttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	140	NA	intron:APBB1IP:NM:019043:2/15
0	chr10	20707266	20707571	1000035	0	+	Ya5ac1952; RIP_Alu_chr10_020_01	AGCCCCAGATAAACCCACTT	CAAATTTCACATACACAATGCAA	SINE	Alu	Ya5	atagatatacaattttttgtttcaatatgaaatcatagtgtaatcttttaaaagacattttaagtggcaaccatatatgcatctatgaccaactttaccc<br>aagtacaggaaatggcatatggtgacgctatctggccagcagcttttgtgaagcactctagattgtgtaaagtactacaacctttgagaagttaacatgc<br>aaaaaatacgtgcatctcgtgcatctcagtagtgtggccaagtgtcgtcgtttacccaggattgatgaggttctcagaacacgggacttttagcacaact<br>aggaagccccagataaacccacttgagttggtctctgtaatcagaatcaattcagtatgattggtcaaaggtacaaacttttagtt<font color="green"><u>AAAAGATTAGTAAG<br></u></font><font color="red">GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGATTAGTAAG</u></font>ttctggggatgtaatgtatatcatgacaactccagttagtaacattgcattgtgtatttgaaatttgtaacaagagtgta<br>tatatatatatttttttgtttgtttgtttgtttgagacggagtctcaccctgtctcccaggctgaagtgcaatggcgccatatcgactcactgcaacctc<br>cacctcctgggttgaagtgattctcctgcctcggcctcccgagtagctgggattacaggcgcccaccatcatgcccggctaatttctgtatttttagtag<br>agacagggtttcgccatgttggccaggctggtcttgaactcctgacctcaagtcatccgcctgccttggcctcccaaagtgttgggattacaagtgtgag<br>ctacca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	483	163	NA	intergenic
0	chr10	49948022	49948340	1000036	0	+	Ya5ac1960; RIP_Alu_chr10_049_01	TGAGATGTGCTGGAGTGTGAG	CAAAAAGGTAAAAAGCAACAGG	SINE	Alu	Ya5	gaaaggaccagggtgcaccccttactacacacagccctgtttccaccatgtcaggccccagagcccagccccctccaggaatgagtcctgcctggacaac<br>cttccaggcctacagttataaggacaggaccacctctatcaccaagtgggaagctgaggagaagcaagtcctccacctcctgcccctttggcacaaaaag<br>ccacttagaggccacatttctcacatgcaaaggaccagcatgcacagctgtctgtccagggtcccatagtcccacatggcagccatgagctccaggtggc<br>tatcaagtcccaaaatgtgatgaatccaaaatgagatgtgctggagtgtgagatcacaccagatgataaagccacaccttagcataaaaaaagaa<font color="green"><u>ATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATCAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAGAAATATGAC</font><font color="green"><u>ATATC</u></font>tcattcatcatctttatttgttgatactgttggaatgatattccagatacagtgggttaagtaaaaatattaaaat<br>taattttacctgttgctttttacctttttgaatgtgactactaaaaaaaaaaatggtcagatcacctgtatggctgacatatttctagggggcatcatga<br>aaagggccttcacttgtctgagcagctgggctgccagtggtgaaggggcaccccaggaaggatgagccctgcacatgagaaggtgcccctgcagctgccc<br>atgccaggaacggcagtcactcagcacagtgaaagtacctcccacagccccaagaggtaagaggaaccttcattccaatgttagagaagagtcaggagtt<br>cagaagacccactttataa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	499	182	NA	intron:C10orf72:NM:001031746:4/8
0	chr10	57372054	57372380	1000037	0	-	Ya5ac1972; Ya5-MLS07; RIP_Alu_chr10_057_01	TTGAGTGGAAGGCTTTGTCA	TGACAGTATGGGCGTAGGGT	SINE	Alu	Ya5	acttacattaacttgttcgagattttaacttaaaaacttttctgaggcttgagtttatgtgaatttagttttactaaactttttggaggaggctatcttc<br>agaatagcttcttctacctcacatacttcctcttctgtggttttctcctggctctgatgtcctgcctgccccactccctacccacactcttttgatcttt<br>acctccattctccccattatgctcaatttgtgtaccactctctttgtttttcctccgtgtagtgtggaccttatctcataaaggtctttgagtggaaggc<br>tttgtcaattttggctttaataaaataaataattcaaaaaataaaaaacaaaaaatcccccacaaagattggccaacctacattaat<font color="green"><u>AACCATGAAATTA<br></u></font><font color="red">GAATAAGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGG<br>CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACCATGAAATTA</u></font>gaataagtcaaggatcagtttgctcagaccctacgcccatactgtcagtcttttctgact<br>aaggcatttttagataacaaaaatagtaaggacatgtagaacaaatcattttacacattcatgaattatcagtcatttgttaaactaatggacagctact<br>aaatttgaaaactacaaactatagcagaccactacttttaaattcaaatatttcttgcattaaaaagaaagaaaaatctattgaattagaaaaaaaatgt<br>tagattgaggttcttcttttgtaattgaataattttaattagataatgtttctaagtaaaaactttaagtgtgtttgctgatttggtattactttaaaag<br>tacagaaggaaaagtacagaaggaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	167	NA	intergenic
0	chr10	65938806	65939098	1000038	0	-	Ya5ac1975; RIP_Alu_chr10_065_01	GCTGCTTAGCATTCTTCCCA	TGGATAATTTCTGTTCCTACTTTCG	SINE	Alu	Ya5	taaccagttaaaatgaaaccagagaatgctatactaaataatatagctttgataacatttaatataattttttgttagcttatcaatcaaaggttttaga<br>caaccacattatcaacatattagttgtttctttgaatttgccaggaaacttgaattttccttgaccacatgctgaaataatttctgttcatggaaattag<br>ttggctttagatgttgtttggttgtaaaattatggtttaccattatttttgtttgtttatagttaattagcattttcattagctgcttagcattcttccc<br>actacagaagtgtttctgtaaattcttcaaaacaagcaactaagaaagagaagaatgatatttcaacaaatacatatacccttt<font color="green"><u>AAAACTGTATAAAACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAACTG<br>TATAAAACG</u></font>aaagtaggaacagaaattatccaagttaaaaaacagatgattcatctggacactgagatatatgattacatttattgaaaacacttcaaaa<br>aaaagtacaacttattgaacaaagttattgcaaggtcacttattactggagataagatcagcgttaaaacctacaataaaatctaaatttaaagacttcc<br>taaactggggtttctacaattttccttaatgatttttttaaatgtaaaactcttattttctaacttacatttctcttgttgcaattattttggagtcaga<br>tttagaatatattaaaatatttagtcgtagcaactttttttcagaggtcttatgtttacatctaaactggatctgaagagggttttgtgtgtt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	142	NA	intergenic
0	chr10	69942117	69942424	1000039	0	+	Ya5ac1980; RIP_Alu_chr10_069_01	TACACCCCAAGACACTGGGT	TGCAACTATCTTCATATCCAGGAG	SINE	Alu	Ya5	tcaagcaattctcctgcctcagcctccttagtagctgggattacaggtgtgcgccaccaagcctggataatttttgtatttttagtagagacggggcttc<br>accatattggctaggcttacacacgtttaattttgattctttgtatacatgagcaataaactgtgtgaggaagaattcattgcagaggcagggcacagtg<br>gctcatgccagtaatcaaagcactttgggaggccaagacaggtgggtcagacagcttgagcccaaaagtttgagaccagccttggcaacatagcaagacc<br>ttgtctctccaaatatttaagacaccctgtcacaaataaataaataaatacataaatacataaattagtctaatagaaactaaatt<font color="green"><u>AAAGATAAATGATA<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGATAAATGATA</u></font>attcactcctggatatgaagatagttgcaatttttctatttcaaagtacagacttcctcactattaaaaatgttggtt<br>ggggctggaagtggtggctcatgcctataatcccagcactttgggaggctgaggcggatggatcaactgaggtcaggagttcgagaccagcctgaccaac<br>atagtgaaaccccatctctactaaacatacaaaaaattagctgggcgtggtggcgggtgcccgtaatcccagccactagggaggctgaggcaggagaatt<br>gcttgaacctgggaggcggagtttgcagcgagttgagattgcaccattgcactccagcctaggccacaagagagagactccgtctgataaacaaaacaaa<br>acaaaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	1130	808	NA	intron:SLC25A16:NM:152707:2/9
0	chr10	71280181	71280182	1000040	0	+	Ya5ac1986; pAlu10-71502576;1104685137744; RIP_Alu_chr10_071_01	AGCAAAAGGCAGATTCTGGA;NA	AGGCAGTTTAACGTGTGGCT;NA	SINE	Alu	Ya5	gaacacatagtgacggtgacagacattagctggtggctgccctggagccataaaactcccactgggtgagctggaggtggagggaggcgctgatcacttt<br>ggttctcaactacagcaaaggcagacgagatccaaatgtccatggatgagatctaaatgtccacatttgtaaaatgaatttgtgcattaactcattaaat<br>cactgagtttggaactctaggtaagtttagactgtgcgacacagtacgatacagggcaaaaggcagattctggactccacaagatctgggttcaaatccc<br>agctctggcatcaagaagcttcaggaagttgggttctttcaaagcctcggccctgtctctagtgggatgaggataacaatcctctt<font color="green"><u>AAGAGACATCAGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AGACATCAGGA</u></font>gaggacctggagccacacgttaaactgcctggcatggggtgacactcgagaaagagggtttcttaccccatggcacatgtctaatgcag<br>gggccttccagcggcctcctgcgtctggaggaagccacctactgagaggtctctgccagcctgctcagggtactgcttttcttagtgctgtcttttacca<br>atgggcaaagggcgggctgttgtccttgtgatgctgaggggggctgaggcagatcaggttccctgggaagctgactgtcagccagcagactctacataca<br>caccattgaaaggggaggggaagagagagaagggaaaggcaacagaccgggcaaaggaagatgatgagctgtgccaactctcagtgatggcctcagc	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	487;NA	176;NA	NA;NA	intron:COL13A1:NM:080807:2/37
0	chr10	74468392	74468689	1000041	0	-	20268; Ya5ac1988; RIP_Alu_chr10_074_01	TGGCAAGTCATCTCTGTCTTTT	TTCCATTTCTCTGATCTACCCAA	SINE	Alu	Ya5	acaaacaaacccataaaacaaaaaaggcttttttttttttaagaggcagggtcttgctctgtcatctaggcctaagtccagtggcatgatcatagctcac<br>tgctccttccaactcctgggcagaagtgatcttcctacctcagtctcccgagtagctgggaatacaggtgctcaccaccatgcttggataatttttaatt<br>ttttattttgtagagacagggtttcactatattgcctaggctggtctcaaactcccgggctcaagtgatcctcccagagtattggtattacaggcgcgag<br>ccattgcatccagccaaaaaaggctttacttatgttactgacaatctgttaacttttggcaagtcatctctgtcttttccactatt<font color="green"><u>AAAAAGCAAATAAA<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGCAAATAAA</u></font>aaccctaagaatttactacagcttgtaaatgaaaaagctaataattttgggtagatcagagaaatggaatttgaagtttttgaaatgt<br>aaacattcagttttgtgctctgaaaagatagttaagtgaactcataaagtctagttaaagtaatataaataatgacctatgcaaataaacaataatctgt<br>ttagagtggtagaaaagcttttttgattctggtgggaaagtgattttcatttttttactctgaagtgatgatttcctacaatacggtatttatgatatca<br>tgaatgtaacatgatatatatgtatatgtgtgtatttatttatttattttattttactttattttctttcggagacagggtctcactctgtcgcccag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	425	113	NA	intron:P4HA1:NM:000917:9/15
0	chr10	85591497	85591801	1000042	0	-	Ya5ac1997; RIP_Alu_chr10_085_01	GTTTGTGCTTCAGTGGCCTT	CAGGTGGCATTACCACTCCT	SINE	Alu	Ya5	cagagtgtaaaatctagtgttcttcattctactgtaccacctgccatagcctggggtggggtcctgctacaagggttcccactggtagtaagatgtcctg<br>gagtacatcaggactgggtcatttctgcgtactctaaaactgcctttttaggtttccctcatagggccattttccccttaatattaaagtgtgtcagttt<br>agcctctaggaaggcagtggttgaattacaagtacaaggctatccctcctcataagctcggactcatttagcttgtgtttgtgcttcagtggcctttata<br>cactattgaacttcatagcaaattcatggagagtaggggaaaatatttttatcctgtgacaatctgatagaatggaatgtattt<font color="green"><u>AAATAAAATCAGCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGCCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAAA<br>ATAAA</font><font color="green"><u>AAATAAAATCAGCATC</u></font>caccttacctttggtaggagtggtaatgccacctggaaggcagggttgatgggaagctctcaggcagcatgctcatact<br>ctctggccttggcatttgctcactgggtttcagggggagctcatctaggttccccaattctaacattgtgtactttcttatttgaaattctgataggttt<br>tcagcattaaaacaattcccagccttttctaatttggaaaattctttcattcatgctacctcaggaatcattattatctttttataggtaactaaattca<br>gaggggtcagatggcttcctcaaggtcatgctgctaagatatgagagctgaagtttttttattttatgttcactgctcttttataacatacatttatgga<br>tttga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	480	159	NA	intergenic
0	chr11	12900319	12900585	1000043	0	-	Ya5ac2013; 812; RIP_Alu_chr11_012_01	TGGCAGATTCTGACTGGCTA	CACGTAAGGTGAAAAGGGGA	SINE	Alu	Ya5	ccacctcccaggttcagtggattctcccgcctcagcctcctgagtagctgagattacaggcatgtgccaccacgcccaactaatttctgtatttctagta<br>gtaacagggttttgccttggtacccaggctggtctcaaactcctggcctcaagttatctgcccacctcagccactctaagtgctgagattacgggtgtga<br>ggcaccgtattgctccagatttggcagattctgactggctaatttttataccttgacaggcactaaccactaagacctgagtcatcatatactttaaaat<br>aagtatctacatttaaatttcctttttgaattggttattaggaaaatgtccaactccttaggcaaaacttcctactttctgtctacaaat<font color="green"><u>AAAGAGAACC<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAGAACC</u></font>atgtactccacattccccttttc<br>accttacgtgccaagaaattcaaagctaaattcagagttcaactacaataattaacttgtctcaggtgcttctaatagctactaacagtcagggtacagc<br>tccttttactggtttccaatctgctttaacttgtacttatccggttttatgttacccataaatgtagtgagctttcctcacattctgcattttggatttt<br>atggggtataaatcataaacaaacaaaaatacccaggtgtgcatttttctcacattcaaaggtttaacatttggctccacaaaagagcagctcagcagga<br>aatcatgcatgtctttccctaaatgagatcagcatctgaactcccaaggctgaagaggcccctgggt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	489	212	NA	intron:TEAD1:NM:021961:10/13
0	chr11	16179750	16180054	1000044	0	-	Ya5ac2019; RIP_Alu_chr11_016_01	AATGGGAAAAATCGGAATGA	TGTTCAAATGCTCCTTATTTGC	SINE	Alu	Ya5	ttctactagtcttcctttacaataaaattcattatgtcttcactatgtgtatattaataacatggccttagaatcttcagaagcaaatgaaaatttttca<br>ttggtttatgttttctttgtgtgtattttcatcgtataagagttgaacatgtgcttaatataaaaattaaaattcataatagtgctgtaaaatttagata<br>ttttaatactctcattttttacatgggcatttttctgttatttagttaattagtagtgaaagtataagtttttcacttctaaaatgggaaaaatcggaat<br>gatcttcatatatccttaattgggagtcacttttcatgaaaaataaatttattatttctatgaattttaaattaaaaatctctctt<font color="green"><u>AAAAATACTTTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA<br>AAAAA</font><font color="green"><u>AAAAATACTTTGCA</u></font>aataaggagcatttgaacaaactttatgaaaccaagattattagaacctatacattgttaggtttactttaatgagttata<br>tctatctatatatagaatatataatatatacatttatatatttgtttattatgagtttctacatattttaaatagtgatgaattgagcctaattattcta<br>aagaatagtgccattcatatttcagcttgccagctacataaatttattccaggaaatttttatgacatttaaaaatcaactatagggttctatttatgta<br>atattaccttgtcagaaactgacattaaatgagaacaagttgtgattgtgtattcatatatcctggcttacctggtattgtcctggtttctatacctgtg<br>ttctt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	456	137	NA	intron:SOX6:NM:033326:4/16
0	chr11	19511832	19512127	1000045	0	-	Ya5ac2035; RIP_Alu_chr11_019_01	ATGGGGTGACAAGTGCAAAT	CAGTCATTGTCCTCCTGGAAA	SINE	Alu	Ya5	tgagtaggtgctcaacatgtgttcaccaaagctgttggacccatgattacaaccatgcactgaagtctgcactgtgggtacagcaggggacaaactggat<br>caggtcccactagatcaggtccgtgccctctgagatcccacagtctaatgggggagacaagcaataaacaaataagcaaataaacacgatgctaccaggg<br>gttggccaacactctgcaggcactaagcagagagatgcagtaaggagtaactggaatgataagcaaggtggcctatgacatggggctgtaaaaatggaga<br>cccaaatgaagaggagccacaagggtggcatggggtgacaagtgcaaatgtcctgagataaaacaattcagtgtgtctgtggat<font color="green"><u>AAGATAGTTCCCAGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>TAGTTCCCAGAG</u></font>gggagagagagagagacagacagacagaaacagagggggtgggggtagagaaagtgcacgtctcagagaaggtttcagtatgtgatat<br>ttccaggaggacaatgactgaaaagacagggagaacctggtttcattggggtttcacccagccctgcaggaggatgccagagggaggaaaatgcccagga<br>acacacatgcccaggacatgtgtggacatggtcagctgatggcctttgtaggagggagagagaattgtttacaccaatgtttgtcagccttgaagaaggg<br>ggtggatataattttgaccccaagaacatttcacaatgactgcagatatttttggtcatctcagctggggatggggagttgtcgctaatggcatct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	179	NA	intron:NAV2:NM:001111018:1/38
0	chr11	39761704	39762026	1000046	0	-	Ya5ac2045; pAlu11-39844195; 5052; RIP_Alu_chr11_039_01	GCCACTTATCCGTTTCAGAAGAT	CTATGGCTTTTCCTGAACTTTCC	SINE	Alu	Ya5	tgtgccattgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaataaataaatagaaagtttgaattacttccttaattccccaat<br>gactcaaccccaacactttgcaggctacttacatatacagttgtaagaaggagattgctcttttcacatatgtatacatgtatatgtatgcatataagta<br>tgccttcatttgtaactcaatatcctaaaggatgaggattgctagaaattatatgacactaaattattcaaagccacttatccgtttcagaagatatata<br>atggaagtctgtattcaagatgtgtaaaaatatttcactgaaatttttctttatggacaaattggtagataccagaactctgttaaaa<font color="green"><u>ATATTACAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAACAAAAAAAAAAAAT</font><font color="green"><u>ATATTACAAATT</u></font>gtacaaatcgtactttaaaatctttcctgtaatttttttcagccatgttatatgttcaagcaatt<br>taattgctcctttttataaagatttatgctttttgtgttttcaaaaagggaaagttcaggaaaagccatagttgaatgtagcatccaataaacatgttcc<br>ttataaatgagataatgaatctttgagaactgagggaactactctcacttatttataactctacttaaattccaagattcctaaagagaaaaatcaaaga<br>ttgatcagactagccttagaaaacattaccacgtattctgtagaagaaatagtgttgtgattttaatgagtaccacacaggctaagggtagatttgcctt<br>attcttcttcctaaaatcttaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	599	264	NA	intergenic
0	chr11	25521063	25521389	1000047	0	+	Ya5ac2050; RIP_Alu_chr11_025_01	GTGCCAATGTATGCAACAGG	GGGCGTCCTCTCTTATTTCC	SINE	Alu	Ya5	ttacttctgaagctatatcatccaccttacttcctaggaatacttcctgccagtgtttttcacaaatgttattattgtgttttgttgaaaacaataacaa<br>acatgagtttacctggattgtgcaacaaaatgtgaaaaataatttattttctgatcatgctaaatccacgatttggcattttatatcataaacatagaac<br>aaaacaacatccaattatgtttccttttgaaaccttcagaactactacattttcagaatgccatctttattcagtattaattacacccctaaaatcaacg<br>ggatagaaaagtgagtgccaatgtatgcaacaggaacaaaagtctcatttgcacaggaaatgtccatctcttccctagcatggctt<font color="green"><u>AAAACCATGGATGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAACAAAAACAAAAAAACAAAAAAA</font><font color="green"><u>AAAACCATGGATGT</u></font>taccaaatcagttggaaataagagaggacgcccataagaagggactgttaatgttgcag<br>gaatatgaccttgaaagccctgaaaggaaagagatgtgccactcctagagtattgcttgctacctggcatgggacctgaaaaaggggtgagatgactgct<br>ctgagacccagtatgaatgattgcatgtgcacagcgcagaaaacggtcactgggattcctaccacccttgggtactgtagatcagaggcagcactctgtt<br>cagaactcagataagcaagaaccaacacataggccctcataatgtagctcaagcccatgggtcagaagtggactatttatgtcccagaaactttatggaa<br>tactgtggctgatactatgagggaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	460	341	NA	intergenic
0	chr11	89572170	89572500	1000048	0	+	Ya5ac2095; B65; RIP_Alu_chr11_089_01	CTAAAAGGGACACCAGCCCT	TGAGTTATTTCCCCTCTCCG	SINE	Alu	Ya5	ggcaagccatccaacaccaccagattaagttgttaagatacctgggcagtagggaagcagtcagggataattaacaacaacaacaaaaaacctatcaaac<br>aatcaaaacaaatgaaacagaaaaccctattaacaaaacctaaaaacaagctgggcttaatagcttgcatttcaaaactgaggccatggaattatactgg<br>tgaaaacaaagtaaataacaaatatgaatgccaagtcaaaataatttgccataaaagatgaacaacaaaaaaaaaccctgttaatgttcaaatagataat<br>ttaaaagtacctgactgctaaaaacaaaatttacagagtacatacccatatatcctaaaagggacaccagccctcataaatgagcttttaag<font color="green"><u>AGTTTACT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AATAAATAAATAAAAAAAATAAAAAAAAAAA</font><font color="green"><u>AGTTTACT</u></font>tactgtgagtatacgcatgacataaattttcaggctgaggaataactgattaaaaaaaaaa<br>aaaaaattgggagttcggagaggggaaataactcaaagtccctttaaaatatttgcaagaactctttaagtttctctacactttgatggttgaataattt<br>tctgaagaaaattcttaattaaatccttgcataaaatataaattagaataaagtaaaatcattacagtcctttgccagtatagttacaccaagaagttac<br>atcttcaacctataaacatttgttgattcctaatcatatcttaattgtttataaattactggcttaaattattaccaaaaaagtaggacaagtcttaaga<br>ccttgaagaattccactaaaaacagatggta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	481	142	NA	intergenic
0	chr11	92616000	92616332	1000049	0	+	Ya5ac2102; RIP_Alu_chr11_092_01	CCTGCTATTCCTTTCCTTTAGTG	GTGACTTCTAGCCACAAAAATGG	SINE	Alu	Ya5	tttgtctttttttggattattttttatcattctatttttccttctactagtttagaatatatacctgctattcctttcctttagtggttccttaaattat<br>aacattatgcttaagttatcaaatccccaaattaatcaatactttgctgcaccatggacaatgttagaaccttagaacatttaactcaattttctcaccc<br>aatcaatttacatgttattattgtcatgtattttaatgtatgagtactatttgaatatactcgtttatcactttatttgttcttaatttcttcttgcttc<br>tcagaccttccatttgatattgcttctcttctgcctgaagtatattgtttagaatttcctttcatgagagtctggttgtgtt<font color="green"><u>AAACACTAACAGATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACACTAACAGATTTTC</u></font>ttagttaaaaatatctgttttctcttcattttaaaaaccaaatattaac<br>tgggtataatatctagattggaagttattttcaacacattgaagaaattctgtctcccatttttgtggctagaagtcaccttttggtccaattgtttctc<br>ttttaaaggtaatactttatctctgtctgcttttaagattttttttcctatctctggtactccattgtttcagtgtgatttgtctatgatgaaatttttt<br>ttatctttctcgagattgtttatgcttcttgcaagtgtgtattattttctttagttttaaaaaataactctagctattaactctttaaatattgctcatg<br>gccccgctttctggctcctttttctaggacttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	NA	NA	NA	intergenic
0	chr11	96607006	96607321	1000050	0	+	Ya5ac2105; RIP_Alu_chr11_096_01	TGTGATTTACTTCTTGAGTTTTCCT	AACAGAAATTGAATGGACACCC	SINE	Alu	Ya5	gaaactgtcacatttataaggtattattaagaattcttgtttcttagagactttagttcaaatcaatccattaaaaggattggccagttgcttggtggct<br>gatgtaaattaaatgctatttcaatgtaaaatggcagctcttaaacagatcttattaagtgtatctatgataatgaatttcttctgaccaaatttagcag<br>ccttttctctcttaaacttttaaaacctcagagtagtctcgacaaatatggtttttttttttttttactgtgatttacttcttgagttttcctaagagtt<br>ctctgaaactttattttttctagtgtaagtttctgaaacaaaatcactgagatctctatttttgtttttctatctactttcatttt<font color="green"><u>AAGAGTTTATTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGTTTATTATT</u></font>ttacttaatttctaacttagggtgtccattcaatttctgttgtacaatcaataaagcatcaattcaaataatct<br>tttcattagatttgaagttaaattaataataattaaaataccctgttattttacagttaacaaagcactttcttgtatgttacataatactataaatctg<br>tatactagatgtgattctcacagatttggactgggtatgtgacttgtttgtcttaagattacttgtggagcttaggcttttgcattttgactgtcagttc<br>catattttttccaaattcaacatattaaagtacttaagctcatattccatgccagaaactatgctagcagctgaactatgaaatattttggtcccaaact<br>catttgagtttg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	174	NA	intergenic
0	chr11	119224732	119225011	1000051	0	+	Ya5ac2122; RIP_Alu_chr11_119_01	GATTATTGGGCCAGCTTGAA	GAACAAATTCAGCACGAGCA	SINE	Alu	Ya5	ggaatattgccacgaagtgtgttatgaggttgattagaatggactgacttgatgatcctaagagaaaggctgggtgtggtggctcatgcctgtaatccca<br>gcactttgggagacccaggcgggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaagccctgtctctactaaaaatacaaaaaaa<br>attagccaggtgtgtggcgggcgcctgtaatctcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaa<br>gatcgtgccatggcactccagcctgggcgacagagcgaggctccatctcaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaaagaaaag<font color="green"><u>AGAAAGGA<br></u></font><font color="red">TCTCAGCTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA<br>ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGA</u></font>tctcagcatacc<br>tgtgtttgtcaaggaggctgacttcccacctttgccccatctttgcatttctgaaaagtttctttagagagtaaacacagttcagtcaagagccatgtcc<br>tctccccacacatgtggctcacagccctaagaggtggaagggccttgctttagggcgcagtgaggaatggctgcaggtgcttggtgctgggcatgtgtgt<br>tttgagtgcccgggtgtgtttctgtctgtgtatgtaacacacgtgtcaactgggacctatgatgctggctggaactcccttttcatatcctagggaagtt<br>caatgttttatcctgagatttctaagaatttccagagaggggagtgagcttgagttctcatgagggtcttggctccaagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1123	835	NA	intergenic
0	chr12	128406651	128406954	1000052	0	-	pAlu12-129579553; Ya5ac2130; RIP_Alu_chr12_128_01	ATTGCCAGAAGCTTTCGTGT	TTCCCTGAGCATTTACTGGG	SINE	Alu	Ya5	gtctcactctttcacccaggctggagtgcagtggcacaatctcagctcactgctgccttgacctcccaggctcaagcgatcctcccacctcagcttcatg<br>agtagctaggactacaggcacacaccaccatgcctggctaatttttgtatttttattttatttatttatttatttatttatttatttatttatttattta<br>ttgtagagacagggtttcaccatgttgtccggaatagtctccaactcctggggtcaagcagccctcccgcctaggcctcccaaagtgttaggattacagg<br>catgagtcaccgagcccggcctcgtttcttatttattgccagaagctttcgtgtagcatttgttaattgacttcggcatccgccttacttt<font color="green"><u>AAAAATCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATCCC</u></font>ttcagtttctctagaagcagactgtgagattgggatttgtgtgcaactgatttatgaaggaagcgcttccaggagaacccagtaaat<br>gctcagggaaagtacgacgggaatgggtggagaacccaaatgaagtttcagatgaaatcgcgtgcagggtagcttcaccctgatcccgtcgggggtggct<br>ctggagggcaagcgatcctgctgcctttgataccccagctagaggcacaggagcagggctgtcacctccagcatcggactctgcgtgagggcccctccaa<br>gggccaggaactctcaggcactttaggctctttgcgcttgtgggcaaggagacttcagaaactaaaaagagtcatcaaggaaagttgcaggtacagattg<br>ttaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	476	163	NA	intron:TMEM132D:NM:133448:3/9
0	chr12	23687007	23687305	1000053	0	+	Ya5ac2140; RIP_Alu_chr12_023_01	GAACGTGGAAAACAGATGGG	ATCCCCATGTCACCATCCTA	SINE	Alu	Ya5	tctaatatgttaaagacagcctccaggaaaaggtgatgtttaagctgaaacttgaattaaattatagttagctagacaaagaagggaagaaagattgttc<br>caggcagggaaacaattttcatgaagaatcaaatggaagtgttagttatagcccagtccctgtattgctgaagtacagagagcatgtagggaagtgagat<br>caatgggattggggagggagtaagatgccagattatgtgtgatttctgtaaacattaaatgatctaaactttatcctatacggtaaaggaaatcatgaac<br>gtggaaaacagatgggttgagtaaaatcacttgggtgggaggttgagagctgtaatcaactagtgagcagatgcagaaatctgtat<font color="green"><u>AAAAGGTAATTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGGTAATTATG</u></font>gtcagactaggatggtgacatggggatggagagtgaggcagggactccagagatatttaaatggtataactggtaaaacctaatgac<br>tgttacgtatgagagtaacagaagactcaaggatgacttccaggtttttcactaaaacaactgattgacatgtggtagtatgtactgggtttgtaaacac<br>agattagaagcaagactgccaggtggggcctaaagggtgttgttgcggggaaggaacaaagagttctgttttagatattttaagtttgaaattatgatta<br>gatatccaggttgaggtatttattagacacttgataaacatgttaaaattttaggggaaaagccctcataggagacatatacttgagagtggttagcat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	444	131	NA	intron:SOX5:NM:006940:7/15
0	chr12	53139776	53140076	1000054	0	-	Ya5ac2169; RIP_Alu_chr12_053_01	GGGCTAGGAGGAAGTGATCC	GTCTGGGGAGGACATCTGAA	SINE	Alu	Ya5	ggcatgcgagttcccaaatctctgccgtatgttctgccatggaaaaacagtaagtgaaatagagacaaaatagttttactcttttcattgtgctaaatac<br>agttgatcttgattattcagatgtgttcagtctgaacaccttgcatttccatgacccttaaagtgagtgcctccttaaatgttatgccctaagcacctta<br>ctcagttcaccctactgaccgtggttaggagcaagaaattatgaacaggaaagtataagatcacagaagccaaaagaatattttcaaaatggggtgacca<br>ctgacgtcaaataccatgagaaaatttgggagccaataaaaaggttaatgatttgggctaggaggaagtgatccctgatttctttc<font color="green"><u>AAGGCATAATATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGGCATAATATCA</u></font>gtagggaattgggatcagaaattggattgtgagggcctaaaaggaaatgagtagagagaaaatgaaagtcataagtcataagaac<br>cagcataaagaatggtattcagatgtcctccccagactttagaggtcatgctgggtaaacaagtactaaatttgtatcatattaccgtcataatgaaatt<br>tccacatagagaacacccaagatactgtcatttttacttaatacaaactttcttttccaatgttgcccctagattcagattctcttgatttcagtctgtg<br>ctactgtttgagctaatttttaggtggctagaggattcactttaaaacgtttctccctggatacttgcatttcccaaaaaatgaagtcaccaaattatat<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	483	168	NA	intron:GTSF1:NM:144594:7/9
0	chr12	10829042	10829353	1000055	0	-	Ya5ac2181; RIP_Alu_chr12_010_01	TTAATTTCCTGGCTTTCATGG	TGAAATCATCAAACATGGCG	SINE	Alu	Ya5	gggaaaatatgctgaaaaattgaaaagtaggtatattgaaacttacaaaattatttttaagtttaaattttttttaacatcacaaaaacataatttgtta<br>taattttaatttcctggctttcatggaagcaaatacatcataatatttttaagatgtctttctctgattgtcttgttttcagttaagagaattgccatgt<br>ttggattcctcaaggatccagaactagaaataccatttgacccagtgatcccattactgggtatatacccaaaggattataaatcatgctactataaaga<br>cacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgattgactggattaagaaaatgt<font color="green"><u>GGCACATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAGTGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCTGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA<br>AAAGAAAATGTG</font><font color="green"><u>GGCACATA</u></font>tacaccatggaatacgatgcacgcataaaaaaggatgagttcgtgtcctttgtagcaacatggatgaagctggaaaccat<br>tattctgagcaaactatcgcaaggacagaaaaccgaacactgcatgttctcattcataggtgggaattgaacaatgagaagacttggacacagagtgagg<br>aacatcacacactagggcctgttgtagggtggggggagtggggagggatagcattaggagaaatacctaacgtaaatgttgagttaatgagtgcagcaaa<br>ccaacacggcacatgtatacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaatttaaaagaaaatgatcacagaatgctattcta<br>aaatatgtacat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1173	853	NA	intergenic
0	chr12	22988831	22989146	1000056	0	+	Ya5ac2182; RIP_Alu_chr12_022_01	GCTTCCCCAGTGAAATGAAA	TCCCTGAGGTCATTATTTCCA	SINE	Alu	Ya5	caaagtgctgggattacaggtatgagccatcgcacccatcctgcagttattttttatattgagcactgagcctgcctcatgaaattgattttagaaataa<br>gtgggatacattgtatagagagcaataactatacaatctgctaaaaactgttaaaaacttctctgtgtgtttgatagatgtaatgtgcactatgattagc<br>ctgctattctaatgtgtaaaccatagtttttaaatttgtttgtttgcttgtttgtttaaacattgcttccccagtgaaatgaaagttacttttactttga<br>gtcagtgtttagaaactgggtgtggataaatgaccttcaaaagtaaaacactggaaaaatgtataatgtttttacaatgctttt<font color="green"><u>AATATTGTATATGCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AATATTGTATATGCAC</u></font>tgtcaactaatggaaataatgacctcagggatgtgtttatcttggttttagcccacttaaaatacatt<br>tagcctttagcttttccttaggcccaaaccacatcaaatgggccacacacagactcctgaggtcactaccactttatggtcattttaggaagaaaaggaa<br>agcaaactctctcttcatattacgttttaggcaaggaattctcacaggaagagtgaatatatattttttcctttctttctttttctacactaggtgacct<br>gctagtcccacttttcctaaaggtagatttttaagcctacaaaatgaatctttaaagccagtttcaagtgtacttcattgtgagtaagagaagcttcaga<br>atccaatattatctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	167	NA	intergenic
0	chr12	76432803	76433110	1000057	0	-	pAlu12-77841515; Ya5ac2205; RIP_Alu_chr12_076_01	CATTTGCACTCAAGTCCTTCAT	TATTTTCCCAAGCGCAGTTC	SINE	Alu	Ya5	ccccagaacctcccacagtgcctccgacttagtagataaattcagaaatgattgctcaatgactcaatctatcaatgtttatatctgaagtagagaacag<br>aagcaggtcccagagagttttcaaatggttacctagcccatgaaatcttcactaccaaaaagttgacagtcgttttttcagttttgttgtgaagtatctc<br>cagggatagggatccaccatgacctgctttatatcctgttcctatgaaaatcattgttatatttaagatgcctaatttataaattcagaattctattcct<br>cctttttaaggatttagcagatctacccagtaatatctgtgtaatgtttacatttgcactcaagtccttcatttaggcatacatt<font color="green"><u>AAAAATATTAAATAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATATTAAATAT</u></font>ataagtcctttgactgtatattagaatagtgtaccaaaagtcaaaaatagttcctacagccagtagcctaactatat<br>acaataacacctccctcatctcatgaactgcgcttgggaaaatatcaagtcctcactcaagcactatcctggtgttatttagacacaattctggcatgca<br>tggcttaccgtcagaatcagcaaataaagattagctttctagaagtaggcacattgccagcagtaaggaataagagtagaaatgagaattcaaaaaaaga<br>cagctgtctggatccatttagtacatagtagagtggggctacatattctaatataccttgaggacagtgttgtgtcactcacggggcagtaaattaatac<br>atatctct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	494	171	NA	intergenic
0	chr12	93193479	93193786	1000058	0	+	Ya5ac2222; RIP_Alu_chr12_093_01	GTGTTAAGAGGCTGACCCCA	GGATGGGTGGAAAAGAGGTA	SINE	Alu	Ya5	tgctgagggtgatagtcactgatgggtgactgttgtcccacagatgatgcttttgtctctgaaatttatcatgaattatctgagaacaaggactatgtca<br>taacatctctctgacatcccagccctaatactaaatagggcaggagaacatgctggttaaatgggctttggtgggagtgtgggagccggagagatggcgc<br>ttccatcgaggtgtctcccccgatggggtacagtggctgagggcagacgctgtgatgtcacgctgtctgacatggcacaggcatctgctccccatcacag<br>agcagaggcccgcgtgcactttcccagcctgggggtggaggtgttaagaggctgaccccaagggccttgactgtacttacgcctt<font color="green"><u>AAGAAACTGCTGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAACTGCTGTTT</u></font>gagcactaagtgttagcagcatgaaaaatgaacacatatcaatttatgtctgaatttactctcagaattccctgtgg<br>actctgtaaaatgccattttacctcttttccacccatccagctgtggaggcagtggcagatttacattattttacatccagttaagggtgttttttcttt<br>tggttatgtttttaaaaagaacatttattgcccataaaaaagtgtttttgttaaagacaatagtgcctttaggtagtaatagaatgctgtttcacaaata<br>tttataaaactattaaacaagctgagattgctgaagctccgattaaaaggtgcctcccattcatctttccctttagaaactgaagtagcttaactgcaat<br>tacccgcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	176	NA	intron:PLXNC1:NM:005761:21/31
0	chr12	93868200	93868497	1000059	0	-	Ya5ac2227; RIP_Alu_chr12_093_02	AATTTCCCCAGACATAGCCC	TGAGAAGCAAACTGTAAGCCAA	SINE	Alu	Ya5	atttgtggggaggtgagctccttccctaggaaaaagaatgcaaagttataaatataaaattaagtatgaaattgaatattttacttaaaatgggaaaaga<br>aattatagcatgttacaaagttttaaaagctgacaaatagtacaaaaatccagaaaaataatatctttattattggactactcaacactctctttacact<br>tttctgtttttgtaattgcatacctccatgtgcttcttcacatgcaatgatttcgtaatatcattttctagagatagagaattcagtcttccctatagca<br>tggttgaatactcttcctttaaaatatttatatattagaaaagattttcagcctcagaactggctattggtaagtcatgtaaattttt<font color="green"><u>AAAATTGTTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AATTGTTGCC</u></font>aaatttgggaaactccacagaaaatttctttcatatatgaactgtaagacttcatgtacatttcaagttttctcacagagggactgatct<br>taagtattctgaattgatgaccttcattagccagtttgtcattggtaaccccattgaactggtggattatggtatcagtatttcatgttagataaaaaat<br>aaatagataatcaaacaatataaaagcctattctttgtttgaaagtcctttcttcctctaaatgagttagttactatactttgggtataatttgaaaaaa<br>aatatattttggcttacagtttgcttctcattgtcagaataatttccttccatccttccttccttccttcctttctctctctctgtctccctctctct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1150	840	NA	intergenic
0	chr13	100704958	100705265	1000060	0	+	Ya5_545; pAlu13-100743498; RIP_Alu_chr13_100_01	AACTGATTTGCCGCTTTGTT	CAGGGGTACACTTATTCCCAAG	SINE	Alu	Ya5	aaccccatctctactagaaatacaaaaattagctgggtgtgcctgttatcccagcttcttgggatgctaaggcaagagaaccactggaacttgggaggca<br>gaggttgcagggagccgagatggtgccactgcactctagcctgagcaacagagtgggactgtctcaaaaaaaaaaaaaaaaaaaaaaggagacaaaaaca<br>acaacaaaaaaaccccaaaacctagagtggaacaaattcagaatgcttaagtagttcaagagtacactgatggggtctatctggttgtttaagtcaacaa<br>aatcaccactacctagtttatttatttatttatttttccaggatttcaagttagtttttagctggttaactgatttgccgctttgttaa<font color="green"><u>GAATGAATGAC<br></u></font><font color="red">ATGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAATGAATGAC</u></font>atgttaaaagctgcattcatgtaatgtaccaatgtgatgaacttgggaataagtgtacccctgtgaaaccattaccatcaa<br>tgccattgacatatccaccacctctcaaagtttcctcccacaccctttcttattattattgtcaggggacaacaattattggacacataatatatactga<br>attccaccatccaatcctgtctgtctgttgttgaggttgtttttatttttaatattatataaaaaagaaaaaagacaaggatttaccaactacccctgga<br>ctctacaatacacttaaatagtaaccagtcaactctacaacattcaattatttgacattttgttggaatttcttaaggtatgaggataaatcatctacca<br>tacataaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	415	110	NA	intron:NALCN:NM:052867:11/44
0	chr13	35336421	35336722	1000061	0	+	Ya5ac2247; RIP_Alu_chr13_035_01	TAAGCTTCTGAAGGGCAGGA	GTTTTTATTTCCATTTAGATAGCCA	SINE	Alu	Ya5	aaaagtaaaatttaaatagcatgaataaaaagacttcaggatttctggagtaacatagaagtaagttttaaggctgggtgttcagaatggtgcttcgtca<br>tggtagatgctcattaactgagccatttgggttttccttctttcaaatgtttgcccttgcatctccagcacccaacgttgccggtccactatagattctc<br>aatgcatactgaatgaatgaatggttgttgccatgaatgtttctactctataagcttctgaagggcaggaaagtacattatctcatattggaattgaaag<br>gtgtgaggcactcattgggcctcagttatgtctgctaagggttccacagacagagattctaaatacagggtatcattctatgat<font color="green"><u>AAAAAGTTGGCTATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAAGTTGGCTATCT</u></font>aaatggaaataaaaactgtaaaacaaacaaaaaaactccatttttcttctctcttttttttttttttttggaatggggtctc<br>actctggcatccaagctggagtgcagtggtgtgatcatggctgactttagcctcaaactcctaggctcaagacttcatgtcacctcagcctcccaagtag<br>ctgggaccacaggtgtgcaccattacacccagctagtttttaaatttcttgtagacacaggtcttggtatgttgcctaggttggtctcaaactcctgagc<br>tcaaccagtcctcctgcctaggcctcccaaagtgttgggattaaaggtataagccaccatgcctggccccagagctttcccaaatccaagaaaagatcaa<br>aa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	166	NA	intron:DCLK1:NM:004734:5/18
0	chr13	21953219	21953513	1000062	0	-	Ya5ac2259; pAlu13-21985103; RIP_Alu_chr13_021_01	CCCGAAGTGCTCCATTAGAA	CCATGCATAATGTTCAGGGC	SINE	Alu	Ya5	atcacctcccatggggccccacctccaatactgggtattacaattcaacatgagatttggaggggacatccaaacctgatcaggtgccctgcctcctcac<br>taactcaaccccccttttccttttactgtcactagttggtttctttgggccattctctttagtaaaagggaattgaagatcacaccaggaagagactgta<br>gtaactggaactaagtgaacacataatatgtaaagtaaagcaaaggagatatttcagacagaatttgttaggacctaatgtggaaaagctgaagtaggac<br>aagagcctctctaagatggcatatatatggcttacttactaaactctatctttaattcccgaagtgctccattagaagtcctggatt<font color="green"><u>AAAAAAAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>AAAAAAGA</u></font>aatagctcactagccctgaacattatgcatggtattgtattaggtaattcctcaaaattaaagattaaattccaacttacttttcaaagaat<br>aattatacctctgtcatattgattggtttacatgattgtcaagtgtaatatgtcatttaagttaattaaatatccatttctacttcatcatgcattttta<br>tcaattaaaggcattgtactttaatctccacaaatacacaactgttggattccataacaaggttcagttatgattttcatgtatgacttgcatttcagtc<br>ttccttactaaattgagagtactccaaaagaaaaaaaaaatttgtatttccaaaatccaagatgttagctaaaataatgtaatacttaatgaata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	383	75	NA	intergenic
0	chr13	102807865	102808174	1000063	0	-	pAlu13-102846400; 79718; Ya5ac2265; RIP_Alu_chr13_102_01	GGTGCCGAGCCTTATCATTA	TGTTTTCTGTTCCCCCAGAC	SINE	Alu	Ya5	tgcccaagatgcctggtcttaaaaatggccataagattttatctaaatctactgggttgtattaagatagtcagctctccccagaatgaagtttgcagta<br>ggtatgaacaaatcagttgccagtctattagagcacaggttgtctgatattctacccattctccagattcaggaccaatttgggagcaacctgagtccaa<br>ggtgcttagtttccagtaccagctcagtcctaagccacatctggttctagattagctaaagaaggtaaagtccatacccagttgttgaggggaacaaact<br>aaataagaagagtgaatgcacatttatgaaagtgtaaatgaacgattctgttatgaacacaaacatgaccagggtgccgagccttatcatt<font color="green"><u>AAGAAACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAATAAAT<br>AAATAAATAA</font><font color="green"><u>AAGAAACTG</u></font>aattcatgactcccagtctgggggaacagaaaacattactgagctggagcacattggcccattcagttctgaaatgcatgt<br>ccaacaggtaggtggagccctgagcaagaattgctactgtgttgaagtcacagagccagagtgcttccatgtagccagagaaaatcttccagagtaagtc<br>attgctgtggtgagccattgttgggagaggttgtgggtacgtgagacatacaaacatttgtgaatccaccaaaaagaggttaatttttattcctaaaatg<br>gatagacaggttatgttagaattccttctttaccactgaaggggacaccagatactaagcttgcaacatagtaaaaccctgtctctaaaaaattatttaa<br>aaattggttg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	382	63	NA	intergenic
0	chr13	102942392	102942662	1000064	0	-	Ya5ac2300; pAlu13-102980933; RIP_Alu_chr13_102_02	AAGCTCCAAAGCAAGCACTA	TGTTTCTTAAGGGGGAAGCC	SINE	Alu	Ya5	ggatctatgaaagaaaaacataagcccaggaatgtaattacattggcaaataagagggtttttttcttatttaaatatcttcaacaggtttaatgggtag<br>gtaataggttgataggtgcagcaaactaccatggcacacatttacctatgtagcaaacctacacatcctgcacatgtactccagaacttaaaataaaata<br>caattaaattaaattaaaaaataaatatctttaaaagacatataataacaaagtactatggggtttatagtatacctaaaagtaaaatgtgtaacaaaaa<br>catcacaaagttatgtgaagtggcataatatcctttgaagctagactgtgtactataagctccaaagcaagcactataattacaaaac<font color="green"><u>AAAAAAGGAATG<br></u></font><font color="red">GCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTA<br>GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGGAATG</u></font>gaagtggaaatttaaaa<br>atattttgaaccaaagatgaaatgacaacatattaaaatgtgagcagtacagcttaagcagttattacagaaaaatttatagcactaaacaacaatatta<br>ggaagaagaaacattgaataatctcggcttcccccttaagaaacaaaaaagaaaggtaaactaaatccaaggtaagcaaaaaactaaaataagtcatagt<br>aattaataaaatgaaaatacacaaatatatactctgtatattgtacatattatatatacataatatatatttactaggtattttaataaaaaaacacagc<br>tctattttcaaaatttaagaaatacattttaaaaaatctccagcctaataaatttaaaacaaagattactt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	489	206	NA	intergenic
0	chr13	30073598	30073920	1000065	0	+	Ya5ac2268; Ya5-MLS12; pAlu13-30105500; RIP_Alu_chr13_030_01	GGGCCTGTGGTCAAACTACT	CAGTTCTGCTGCATTCTACCA	SINE	Alu	Ya5	cactgatcaatgtactttgtaatctccgccacccttaagaaggttctttataatttcccccacccttaagaaggttctttgtaattctccccacccttga<br>gaatgtaatttgtgagatccaccgctgcccgcaaaacattgctcttaacttcaccacctatcccaaaacctataagaagtaatgataatccaccaccctt<br>tgctgactctcttttctgactcagcccgcctgcacccaggtgaaataaatagccatgttgctcacacaaagcctgtttggtgtctcttcacatggacacg<br>catgaaagaaaccctacctggttctgtgtcttacctgttgggggcctgtggtcaaactactagtacggagttttagtgtcctcacttt<font color="green"><u>AAAAATGAGGGT<br></u></font><font color="red">TGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGAGGGT</u></font>tgtaaggtaactacctactttttatagcattgtagtgaagttgaaatgaattaatccacatatat<br>tatagtgtggtagaatgcagcagaactgatgatgtatgacttctaagactagtccttaagagacctgcagtttttgcttttgccctcttggaacactcct<br>gttgccatgttaagaaaaactctggggagactatgaaggaagagagcatactcggggcaggggggtgaacaggacgtgcacatgtacgagcgtacaagcc<br>aggtgacaccagtaccacagcctcagacatgtcaccggggataccagcaccacagcctcagacatgtcaccggggacaccagcaccacagcctcagacat<br>gtcaccggggacaccagcaccac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	487	152	NA	intergenic
0	chr13	23608968	23609268	1000066	0	-	Ya5ac2272; RIP_Alu_chr13_023_01	GCCCAAAGGGGTGAAATAAT	TTTGGATGCAACAAGTCTGAA	SINE	Alu	Ya5	cctcagcctcccaaagtgctggatcacatgggtgtgagccactgcccatggacttagttacttcttgatattatgtaagcagaatgtaaagaaggttgta<br>agtatttttagttttctgtatattatggtgttttgacatcttaaaaatcctttctggctgaagagagactgcccctttctggactagtaaattcttagag<br>acagcaaaggcccagccaggagcaggcccctggcaaacccagggctggagcccatgtcttcttctttcagttcagtggcctttcaccccaactgaagccc<br>aaaggggtgaaataattttgccaagttcacacagtgactaccagatgtcaacacctgtctctaatgcatgtgaccttatctctcata<font color="green"><u>AAAATAAAGAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA<br>T</font><font color="green"><u>AAAATAAAGAACA</u></font>tatttaatcaaatttgcatccacaattcagacttgttgcatccaaatccatttatccattcacactccttaaatatttcctgtggg<br>cctactatgtgccagtcttgtgctggggcctatctctcagagcccaataggcccagagaatccacaacgttggtgaacatcgtggccccaaagctgagcc<br>catcaaattagctttggaaagtctatatacagaattcatctgacagttttttctgagcatttcctagttctctttctttcctttctttccctccctccct<br>ctctttttctctctccctctctctcactttctttctttcttctctttctttttttgactaagtttcactcttgttacccaggctggagtgcaatggcacg<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	150	NA	intergenic
0	chr13	43278323	43278652	1000067	0	-	Ya5ac2278; RIP_Alu_chr13_043_01	CCACCTGTGGGCATCTAAGT	GGGCACCTCCTCTCTCTTTC	SINE	Alu	Ya5	tggggaaatcccatctctactaaaaatacaaaaaaaaaaaaaaaaaagctgggcatggtggtgcatgctggtagtcccaactacttgggaggctgaggta<br>ggagaattgcttgaacctggggagcggaggttgcagtgagctgagattgcaccactgcactccagcctggatgacagagtgagactccgtctcaaaaaaa<br>aataaataaataaataaataaagaagaagcactaagtctgaagacatagttggtttggatgctacattacaatatatgacaaacaacatttcatatttcc<br>agattttatagaccacctgtgggcatctaagttcattaaaagctaatgttttgggagaggttagctgccatcaaccacccttatc<font color="green"><u>AAAAATGGGATAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGGATAAAT</u></font>gaaaggaatcagagaattggtagtgaaagagagaggaggtgcccacagcaggagg<br>tggagtatcaagaggaaggggagggtatatgcagaagacagtaggagacagcaaacatgttctgcctgcttcacagtcttctggggactgtctttgcagg<br>ggtaatcctggagtttccctagagctgcggcttaccaagcctggctgtacattggtgcagcctgaggaggtactcagtgaatcgcaatcactgagatggg<br>acccaggaagcagaacttttcaaagtgccacaactggcgctgatgtgcagggctacatggctctagaactagtccttgctggaaaggcctgggataaagc<br>atcgtaagtcttcccactggcagtttgatc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	477	132	NA	intergenic
0	chr13	48271233	48271550	1000068	0	-	Ya5ac2282; RIP_Alu_chr13_048_01	GCTGTTATATGAAGTGTTCACCTTG	TGGAAAGCAGAGAAATGCTG	SINE	Alu	Ya5	tgtggctcacgcctgtaatcccaacactttgggaggctgagacaggtggatctcttgaggccaagagttcgaggccagcctagccaacatggcgaaaccc<br>catctctactaaaaatacaaaaattagccaggcttcgtggcacgtgcctgtaatcccagctactcaggaggttgaggcaggaggattgcttgaacctggg<br>aggcagatattgcagtgagccgagatcacgccactgaactccagcttgggtgacagagtgagaccccatctcaaaaaaaaaaaagttttatttcatgatt<br>tgggtgctgttatatgaagtgttcaccttgtacttatgatttgtacacttctgtctatttacataatacatcaatcaaaagtttact<font color="green"><u>TAAAAATAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGC<br>GTGAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAATAAATA<br>AATAAAAAAAAATAAAAA</font><font color="green"><u>TAAAAATAAAAAA</u></font>atcagtatttgcagatgttttaaagagtcaaatagttctacaaggtttaaaacagcatttctctgcttt<br>ccattccttcaccctcaccccataatatctatctctccagagataatctctttcaacttctaaaaagtcagttcttttgcttttgacccttatatctctg<br>aataacatgcttattttcatgtcttaatttttcagttttaagaattctttattgacttccaatatggaagctggaaacgtagctctttctcctttgccca<br>ctcactgtgcacagaaatgtcttccctacctccatatcctccctatgtaaattattcctgattttggttttatttgtgttcaatgtgtataagatatttt<br>ctatatcagagctattta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	498	167	NA	intergenic
0	chr13	103959221	103959524	1000069	0	+	Ya5-MLS22; 239088; Ya5ac2294; RIP_Alu_chr13_103_01	CGACTCTGGTGGAGAAAAGC	TGTTGCCAGACCTTGTATGC	SINE	Alu	Ya5	ttgcctagcccaatgttcaaaagggtttttttctaggtttccttctaggatttttagtttcaggtcttacatttaagtctctaatccacctttggttaat<br>tttcatatgtggtgagtaatagaggtttagttatgtacctaagccctggagattatgaacctcacataaatatgagactcaaatgcctaataaaaatagt<br>aaacacattgactcaggagaaactagaggaaaagaaaatgatttatactcaaaaaccagatttagccatgtaccaagaatatattgtaaaaaacttttca<br>tttaattaaaattaaaaaataaaattatctagaggaataatttttactgaatttttacccgactctggtggagaaaagcctaaataattt<font color="green"><u>AAAAGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGATCTT</u></font>ggatgtgtagcaacacaacaaattatgtattcctgtttctagattgtacatcggagaaaataattttgttctatgccttgtatgta<br>aggcatacaaggtctggcaacaaagcaaaatattcagataagaaggcacatgatatattctgccttttatggtaggttttacttaactttagcaaaactg<br>gcttcactatttaatctactttctttgttttttaatctgatgccaatttcaatttacagtaaaagggaaaaccttgggcaaattgcctctgttgggcagc<br>atataggtatcattccataactgattatctttggttatttatctcaactggttagaggaagtttttaataatgtttaaaggggctacagatagataaact<br>gtaa	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	150	NA	intergenic
0	chr13	63346600	63346899	1000070	0	-	Ya5ac2296; RIP_Alu_chr13_063_01	GAGAAGTCTCACCAGGGCAG	TCAATGTAACCGTGTTCCCA	SINE	Alu	Ya5	agctaagcctcagagacaaatgtaaatcctatagaaaccaaattactcaaatcagaaaaatacttaattaaaaaggacttttgtccaaaaaggacaaaaa<br>gtctcttatcatttcaggagggaagtaaagccctttagtaaagatggcctcataactaaacaaattccaaataaaatgaaaaagcgtctaccaaagaaag<br>gaaggttcagcttgagaagtctcaccagggcagaaaaggcaagccatggaaccagagagttcaaagggctcaagtgagtactcaacaccagtttcaagaa<br>ttactgattctttccaataatgaactttttttggttccactactggacatcgtttaggtcaactaaataacagagagagtctctct<font color="green"><u>AAAAGAAAATAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCCAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGAAAATAACA</u></font>tttatttggaaataaagcattgcaaatagaatatgtctgccatagtaaaccaggtgtgtgttccaggaggtaaaggaagacaaaag<br>cttttcaggaatgtataagaaagattacataattgttttgagataattattatcttttgctacaagggcgatcccagctcaaggctgggcaggaagttgc<br>tgggcagatgtccttgtagaagcatttttaaaatttttggatgtagaagtttattttttgcagtctttccttatagtttttgttatcaggcatgtatgca<br>taagtattctctcttcatagctttccctagctgtatttatcagggtgtggatttttttcagcacgagttactccattttgattctaaaatttttcacagg<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	955	641	NA	intergenic
0	chr13	38926482	38926791	1000071	0	+	Ya5ac2305; RIP_Alu_chr13_038_01	TTCTGAGTTGGTGACACTCCA	CTTACCCAGGCATCCTTTGA	SINE	Alu	Ya5	gggttttgagtgtatacgtggacttcctaagatacacttcgattgagttcttttattgcatcccctaggcaaatgcaattgatttcagaattattgattg<br>ttttggatgttccaacccagtttcccttcatacttggggataatcaagagctgatttctgattctcaagaaaaatggagaatttaaggaatattagatct<br>caaactatcggtataatcttctaatttgtctcattataaagtattctatttctataggacaggttaataatccagaaaaatgaaactaagatgatcaaaa<br>cctgtagttaatactttaaaatacaatccaacaccatttaatcttctgagttggtgacactccaatttcttctctctaacgtttcctt<font color="green"><u>AAGAGTTGTAAT<br></u></font><font color="red">TGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAGTTGTAAT</u></font>caaaggatgcctgggtaagagctgggtttggttttggtacttaggtcttttggtaattccattttagcaccactgaat<br>tatcattagtgctttaaagagctgccttttgtggatagaatgaattattatacatattcatcatttttgtcttcctactgatacatttaaggagtggaga<br>tacaatattttcatccaataggtcacaatgcatataattgctgacattttaaatgcatctggaaaaataaatgttactatattattgtagattatagagt<br>gtccttcacttttttacttttattatttccactttggagattctgtcaataaaagtcaagtgccattccaccctgtgagggtacagggagaagaagctgt<br>ctttcaatca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	398	76	NA	intron:LHFP:NM:005780:2/4
0	chr13	78979409	78979709	1000072	0	-	Ya5ac2323; RIP_Alu_chr13_078_01	CACCCATGTGTCCTTGAAAA	CCATGGATTTTCTGTTTCTGTG	SINE	Alu	Ya5	ggcatacatgtaagtattcaaagaaaagcagaaaaacattcacaaaaatgataaatatcaacttcaggataatgttaaagggattaagagatgaggaaaa<br>gcatagaatgtaaaactttatttcatttcttaaaaaaaaaaaagttcaagatctcaaacaaatacagcaagatgttaacatctattatgtccacggtgga<br>tatagaactatcttttactttatgtttgaagtgtttcatagttttaatatttaaattttaaaaaaagttgatcctgacaagttgtattccacgaatagac<br>atttttaaacatgaaagaagacagaatacacagcacccatgtgtccttgaaaaagcaactaccccatgatgaaaacaagacaact<font color="green"><u>AAAAACTCAATCAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAACTCAATCAGA</u></font>acaaaaaacacagaaacagaaaatccatggaaaagatataatggtaagcactgaatccatttaaatatagaactaaggttaaac<br>atagagctaaagactaacttctggtaaacagaaagcaaatattatatgccctaaaaaagcaaaaatacaacataaaattcagaactgaagaaagagatga<br>caaaacgtatgaacagcactcaacttcatctttcatggcagggatttcatatctcatctaaattttaaacatgcagttttaaaaaatactccgatttctt<br>actgttttttataaactattttcccaattttagtgaactcttacagaacctaagatttttgtggcaaagaaacctttacctagagttcaacatttaccta<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	413	97	NA	intron:NDFIP2:NM:001161407:1/8
0	chr13	83377043	83377343	1000073	0	-	Ya5ac2330; RIP_Alu_chr13_083_01	TTCACAATGCAAGATAAGAAAAAGA	TGACTGGTAAGTATGGCAAGGTT	SINE	Alu	Ya5	atttgcagttaatgttttaattttctgtaacttttcaaatttctgacttaaagctgttcataatgccttttcaatcttgatcttaaatttcttttattac<br>tgcccaacagaacatttttgagcagatagtaatttctattgatttctaaaataaactacaatttgattacagttacaagtagagtttagtggtttcaact<br>gctaagaaacataagctaacttttatatatctatgttaccatataaactacatactatatgacagtatgacactatggtcatatacctttatacttatat<br>ataaatatatacctatagaatatacattgtatacaatacacatatacattgtgtatgtgtatgtgtattcacaatgcaagat<font color="green"><u>AAGAAAAAGATTAGTGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAAAGATTAGTGAC</u></font>attaaaatgacatttcaaatgctacaataatgatggagttgaaacatataaattaaaccttgccatacttaccagtcacag<br>tgttacattttatgtaccccataaacagattcttttgaaaattcagtattaattttaattaaactttcagtgtttgtcgaattccattttgttcctattt<br>ttcttttatagatgacctaatttcagaagctgcatttgtgctaattagtttcattaattcactattcacttacaacatgtggctataatgtatatgtgtg<br>tatgtatgtatatctttatatatgtgaatatatattcatttataacaaactttttagtaagggactaatgattttattattcaccttttaatatctgagc<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	430	112	NA	intergenic
0	chr13	85953194	85953490	1000074	0	+	1763; Ya5ac2333; RIP_Alu_chr13_085_01	TTAATGGAGCATCGGAGACC	ATTCTGCTTTGGCACTTTGC	SINE	Alu	Ya5	gcctcagagtctgttttccaggaagtcagtgaagtacaaaagtacactgaggaaagaaaagtacctagactttttgaggacaattaagataaagactctg<br>tgctaactgataactgttgatccaaatgctgaataattttaattcttacttaagcactaaaagggaatacaacacattctatacattccactggctctct<br>catttctggatctcacaggtagagaagtgagacagatatgtcttttttttttttaatggagcatcggagacctatataataaacttctattgtgatagac<br>ttagtgactttggcaagtcttataactgactcatatgagcttactgtattcactagactgtatcatatttttcttattaaccagtattaatc<font color="green"><u>AAAAAAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAAGC</u></font>aaagtgccaaagcagaataaaaactatatgtattgacattcatacgaaatgtatttatgtatgtcataatataaatccatgcaaaatgacatttt<br>caccataaaggtcacagtaaaaagaaaaataaaatgttgggccaagcacagtgactcatgcctgtaatgtaagccctttgggaggctgaggttggtggat<br>tgcttgagcccaggagtttgagaccagcctgtgcagcatagtgaaaccccatctctacaaaactacaaaaaattagcctggcatggtggcatgcacctgt<br>agtccagcaacccaagagtctgagctccagaggtcaaagctgcagtgagctgtgactgcaccattgcactccagcctgtgtgacaaatgagatcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	471	166	NA	intergenic
0	chr14	58615067	58615358	1000075	0	+	Ya5NBC333; 5330; Ya5ac2388; RIP_Alu_chr14_058_01	TCGGTTTGTTCAAGATGCAA	CCCAGACTGGTGGAGAAGAG	SINE	Alu	Ya5	tttgagttttctaaaagaactctaaacttagaactctaaatttgtagatttaatataaaccatttgggcttttaaatggcatttgaaggcctccatgctt<br>taaaaactgtttggaaaagataccttccaagcaatcaattaaaatacttgagaatataaagcttccatttataaaaggagtgaaaacaaatattttttcc<br>aaacttctgtttgagagaatacgtataaatgttttttatgaaaaactttttaaaatgtaacatttttcagtttaaaaataagttcctaattgattcatct<br>aagacattattataaattaaactcttaaatttaaaaaaaaaattttataccaacaaatcaaaggcaaatataaattaaacttttt<font color="green"><u>AAATAATACTTTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAATAATA<br>CTTTTAG</u></font>ttttagatacttttgtttctcagtgtaaatttataccaaaaaaatttaattcccatgtatttgggaatgatagcatgccaaagtgcattaaga<br>tatcttacctatcttacttatctaatttggaatataggtcaaggtgcatgtaacagggctccaaaataacagtgttttgaattcgccagaaattatttct<br>ctcttctccaccagtctgggagtaaatagtgtgatactagcttaggacatctaccccatgaggtcattcagggacccaggctccttctcttattgttgca<br>ccatctctagtatgctccactgattctcatggtccatagtagctcaccacctcatccacatcatccacagttaaaacaaggtcgaaaaaatg	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	588	281	NA	intergenic
0	chr14	82089370	82089635	1000076	0	-	13644; Ya5JW580; RIP_Alu_chr14_082_01	GCAACTCAGAGACTTTACTGTGC	TCCACTTTCACTCTCTGGACATT	SINE	Alu	Ya5	aaatagatactttaaaaatatttcacagtactgtcccaaactgaacatatgcatactccatgacccaatacttttaattctaggtaaatactcaacaaaa<br>acatggatgtatgttcaccaaaagtcatttgtaaaaatgccgataccagcaagccttgaaaaaatgcaaacatctgtcaagagtagaatgaataataaat<br>tgtgatgtattcattaaaccaaatctgttcagcagttaaaacaaataaactgcagctctacctattgtataaaaatagggatgaatctcacgagcatact<br>atgtccactttcactctctggacatttataataaagtgaaaaaaacacagaagaaatgcaaaatatcctacagtttcacaaagtt<font color="green"><u>AAGAAGTTGATTACT<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGTTGATTACT</u></font>ttgggacactaatatatta<br>atttgcacagtaaagtctctgagttgctgtgtagtagttttctaggcctgccatgacaaagcaccacagactgggtggcttgcacaactgaaatctactt<br>tctcagaatatggaagatagaagtctgagattaagatgtcaacacgattgtttcttctgaggcctctctccttggtttgcatgtgattgtcttcgccctg<br>tcttcacatgatcttcctcctgtatgtatctgtgtcctaatttcttagaaggacagaagacatgttgtagtagggcccacctcaatagcctcctttttaa<br>cttcattacctttttagagatcctacagtacagttgctttctgaagtacctgggtttaagtcttca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	424	144	NA	intergenic
0	chr14	99914767	99915083	1000077	0	+	Ya5ac2360; pAlu14-98834954; RIP_Alu_chr14_099_01	TAGACGGACACCTCAGGACC	CAGCCCTTCCCTCTTTTCTC	SINE	Alu	Ya5	ctcctgcctcagcctcccgagtagctgggattacaggcgtgtgccaccacgcccggctaatttttgtattttagtagagacagggtttcaccatgttggc<br>caggctggtctcgaactcgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactatgccctgcccagaaagatt<br>ttttttaacaagtagaaattcattgcagtgtgaatctgtgtgttgggagtgaaatgggtggatttggatcatgccctcagaattgctccctgcacacttg<br>ggtagacggacacctcaggaccttagccttgtgctgtgggcctgtctgtccagctggctgctacagagatgggatacctggggg<font color="green"><u>AAGAATGTTCCAGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGTTCCAGGCA</u></font>gagagaaaagagggaagggctggagcacagggaaagggtgcaggggaaagtggcaggcctttcccac<br>catggatcctggacgtcttttgatttcagtattttcagacctaccctcgttcatgatgatgagcatatgttctcacttgttgctaataagcagtgcggca<br>ggttttctttatacatttatcttcatggatttatacatctagcaaacatatgctagtatttgtgtaggataaagttctacagtggggttgctggggtgaa<br>aatgatgtgtttaaacttgtaacacatatgaccaaaatggaccttccaaaggcatttttaaagtcctgtctctttctctgtaggcattgtctcttcaggt<br>cttctttttttttcttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	453	126	NA	intron:WDR25:NM:024515:1/7
0	chr14	64596912	64597181	1000078	0	+	Ya5ac2366; RIP_Alu_chr14_064_01	TTTGGTATGGGTACAATTTTTGC	ACCCAGGTCCTCTAGTCGGT	SINE	Alu	Ya5	caggctggtcttgaactcctgacctcgggtgatccatccacctcggcctcccaaaatgctgggattacaggcatgagccaccgcgtccggcccccttttt<br>cttgattataaatgtaaatacatgtttattgttttaataattgggatacataaaatataaaaaagaaaatgaaaaacaatcatatcactattaatatttt<br>ggtatgggtacaatttttgctatttatatacatcacaggtacaaatacactttttaaaaagtttgagaccaggtgtggtggctcacacctgtaaccccag<br>cactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagccggaccaacatggtgaaaccctgtctctact<font color="green"><u>AAAAATACAAAAAT<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTG<br>AGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAAT</u></font>tacccaggcgtggtgg<br>ctcacacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacacaggaggcagaggttgcagtgagctaagatcgtgtcaatgcact<br>ccagcctgggcaacagagcaagactctctcaaaaaaaaaaaaaaaaaaaaaaaaacagtttgagatagtattgtacatactgttttctcacataatatgt<br>tgtaagtatttgcctgtatcgttaaatatttaaatgcgtgtttataatggctgtatattaacctgtgtcccatgtactagatagttttagcaaatacacc<br>atttttgaacctttgggctttgtgtgtatctctgattccttatactaaattcttagaagtgcctttcatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1068	802	NA	intron:FNTB:NM:002028:11/12
0	chr14	25075653	25075887	1000079	0	-	Ya5ac2369; RIP_Alu_chr14_025_01	TAAGGGTGAATGGGAACCAG	CAATCCAATACCACAGGGCT	SINE	Alu	Ya5	agtgaactagagagcattaaaaattaagaaaattaaagttcttctttgtttcctccttttctggaaaatttaatatgaaagccgttcagttggaccatct<br>gggatagtaatgagggaagccacgatggcccaaagctatgcattagaggccttggaaataagaaaggggaaggtgggggagagcgatcatcatgggcatc<br>agagcctgagtggggtgaggagggtgtccaggtgcaggatctggaacatagcaaaatgtcacatactgagcaaggtaagcagtgcattacacacagaggg<br>attgatcaaaagattgactatgtaagggtgaatgggaaccaggttcctcactaatgaggaaaggagttacaaagaaagaacact<font color="green"><u>AGAAAAAGCCCTGTGG<br></u></font><font color="red">GGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGTCTGTAGTCCCAGCTA<br>CTTGTGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAGAA</font><font color="green"><u>AGAAAAAGCCCTGTGG</u></font>tattggattggatgcatccatgtgaaatcagattttttcttatacagat<br>aaatagatgtagtaataaatacagattgagtcaattgccaacatgatgtccccatcaccctaggataatttagtgtgcattcctttcctacaaagaagga<br>tattctcctacctaagccaatccagaaatgcaggtttttccttttttaggtgtctgcctggctgccactgccacctcagcagtacatgtctgtcactgga<br>gctggttttagggcaggccaggagagagaaaagagggggagaaacaacaacaaagatcttccccattctctcaggctcataggaatccccattcctagtc<br>ctctggtcagaaagacaggattcccccaaaaattt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	341	90	NA	intergenic
0	chr14	51664432	51664730	1000080	0	+	Ya5ac2376; RIP_Alu_chr14_051_01	GCTCTTCATGGGTTCCTTCA	ACAGAGCCTTCCCTCTGTGA	SINE	Alu	Ya5	aacagccttaggaactacccttggtaaggaatcagaagatcatgggtctacttcagacggactctaccaaatttctctcagcatggccttggacaagttg<br>cttatttctattcatcttcctcatcagcaaaacagactcttcatgaaagggctcttcatgggttccttcaaggacataggtgtgttaaagcaaaataaat<br>atagcctgagaaggactccattcttctatatttgagtccttggggatgaactgtaacctagcttaataaacaagattgaaaacctaacttaggagtatgc<br>atctgtaacaatagctgagtcttggccaatcccagcagccatacttcaactactcacacactgatgagtgttcagactgtgttc<font color="green"><u>AAAAAAGGCAAATGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAGGCAAATGCC</u></font>aacctgcaatcaatccagctgttctgtgcgtcacttccggtttctgtaggtcatttccctttttttgtctataaatcttcttcca<br>ccacgtggttgtgctggagtctctgtgaatctgctgtgactctgggtgctgccccattcgcaaattgttcattgctcaattaaacttctttaaatttaat<br>tcagatgaactttttcttttatcaggtgtcacctaacatacaagtttttggactaattctgcaaacatatggtatgaattaaagcagtggttctcaaagt<br>gtagttcccagaccggtagcatctgttgggaacgtgatagaaatgcacattcccaggccccatccttaacgaactgaatcagaaactctggggcttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1173	858	NA	intergenic
0	chr14	51826549	51826863	1000081	0	+	pAlu14-50746736; 79667; Ya5ac2380; RIP_Alu_chr14_051_02	GTGATCACGCTGCTTTATGC	GTGATACAACTCACTATCTGGC	SINE	Alu	Ya5	tttttataaaataagcagaatatgtttatgctggactgtgtttcagcataggctgtgatacagacctacaattctttggtgatgctaaaggcaactcaag<br>aaagacaaggaatgatccttcaaagcagctcaaacaggttcaacaagaggcttgagtggaagatacctgccatatgtaaaacggtactgtgggcagagaa<br>aatgaacagtgtttcaaacccaagccccaggctggaaatcataaggacagaatctctgactgttaaatgtagatttgtgatcacgctgctttatgcatgc<br>aagactctgtatactgccattcaggatgagtaccatcaggattctatttctttgataaagatgaacgattctccaaaacaacac<font color="green"><u>AAGAGAAGCCAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGAAGCCAGATAG</u></font>tgagttgtatcactgtagtaggcagcttctaaaagagctaccaatgatcccggtcttcaggtctccagg<br>tattcatgcccttgggtaattctttccctgcaagcatgatctggacctacagacttgcttctaaggtgtggaatacagcagaaaaacatctggaaagtta<br>cacctttccaaataagccttggttgcttgctcgctccgatggaaaccagctgctgtgctgtgagctgtattgtggagaggctcatatggcagaaaatgga<br>gggaggccactggccaacagccagcaaggaatagaagctcttagtcccacaacccaggaggaaccaaatcctccaacaaccacatgaatgttcttggaag<br>tggatccttccttcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	468	141	NA	intergenic
0	chr14	25216955	25217297	1000082	0	-	Ya5ac2389; RIP_Alu_chr14_025_02	TCTTTTCCTCAAAACAAATTCC	TGCGTATTAGTGAAATCATGCAA	SINE	Alu	Ya5	tctaacctgggacagatatactcatcaaaaattctggggccacaactcacatcttcacaaccagagataaaaaaatctttactgctgcactaatttctag<br>ggaagagtttttgtttgtttgctttctattttctcttcttctagaaattagtcccagtcctggaccacttgatatagtaataggaataaggtagattgtg<br>gaatgtgtcgattgcttacaccaatggagcaggcaatatgttagtaggcttcccaaaatcagatggttgaccaggatacaaattacccaagtattcacct<br>gagaaagagagaaatgaatgctgataaagcaaaataaatgtcctttgacatatcttttcctcaaaacaaattcctatatcagatta<font color="green"><u>TAAACCTTAAATTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA<br>AATAAATTAAAAAAAAAAATAAAAAATAAAAAAAATAAATAAA</font><font color="green"><u>TAAACCTTAAATTC</u></font>atagacatgatttaatagtaatgtttcaatatgatgacatcta<br>tttaatactagaagaatttcagtctaattttgcatgatttcactaatacgcattttagttaaaatgatataaccagagtcatggttaaggctcagttgtg<br>ttcccccaaaatttatatgttgacatccttgctgtgtctttaatataaagacctgaatattgtcagtagtataatgtaattatccaaatcccaccgggaa<br>aacatttgggaaaaaataattgtttttttccattgatttctcaatatgcatattcctaatctcttacatctatgcattaccactgattttaaaaactacc<br>atttttatcacaggctgcctccacatcaccatttttcttccat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	168	NA	intergenic
0	chr14	65880398	65880694	1000083	0	-	9480; Ya5ac2390; RIP_Alu_chr14_065_01	CTCAAATGTTTGCAAAACCC	TTCCCCTGATTGAATTTTGG	SINE	Alu	Ya5	cgggtcttcggggtttaataacagcagtaacatactataccttttttccaaaatgatgcccaaatgatgtataaactttttgtgatgtaattaccaccca<br>tcaatcacttcatttctgaaatatggtggcttctgatgagatgagattgctttccacattctcattagtttacgaaggaaagagaaaaaaatcttgcctc<br>tgttagaaaagcaggtaaggatagaaaggtaatttggttacatattacacaaaaactgggtaagaaaggaaaaataatgtcattatacataggctcaaat<br>gtttgcaaaacccttttacatatatagttaagtttaatcctacagatctatgttttggtagcagtggatttatgcaaatcatttt<font color="green"><u>AAAAAATGTCCCCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AAATGTCCCCAA</u></font>acgtaaatctagtggtttatatcaacatcccaaaattcaatcaggggaagtttctatagcctttctatatttaataaggcatttggca<br>tgtttttcatagattaaaaatgctaataatcaatataccaaaaatagatattcttataatgtttgatgagtcataattattgataggtaaacgtgttgaa<br>attgattattgcaacattaccctatctgttgctaacttatcctaaccctagatagatagacagacagatagggttattgctctctctctctctctctcta<br>tatatatgtatgatatatatataagatgtatatatgatatatataagatatatatatatatctaaggctgagaaggagccatgaggaacagtaagtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	468	172	NA	intergenic
0	chr14	86625655	86625960	1000084	0	+	Ya5ac2410; Ya5_432; RIP_Alu_chr14_086_01	CCCCAAACCAATCAAGTAGG	GGCTTTTCCACTTCATGACAA	SINE	Alu	Ya5	gttaatgtattatggcaattctaaggtgtaattatcttttaaaaatatatttttggttctgaaagatgcacatacatagtaatacaaagagttattagag<br>actttttatgttctctgcatcgttctaagtactcttcattagcttgtttagttctcaatacaactctgtgaaatagagactattatttattcatattttt<br>tggatgacagaatggagagacaggagatttaatatatggccagggtcataaagccagtaagtgatagaaccggcatttgaacccaacccaggtattctgg<br>ctccagaatccatctttttattctctacatttaatagattagtcatataaatgttgggcttttccacttcatgacaatgagattt<font color="green"><u>AAAAAACTAATGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAACTAATGGTC</u></font>agccatataactgacatgtcctacttgattggtttggggtgtgaattaaatcacatgtcttttaattaccaactaccat<br>aactcaacgcccttatcagaccacagaaagacatccttcctttttctctccaagtcaactccattccctaaggatgcatactcatacaaatatcagtctt<br>gatcagggttcccttttgagctgaaataagggaaggagactcagtgctactaaaatccccaccaggagctggttatttcagaacagaagtcgtagcttat<br>cctgctaccactgtgaaaaaaactgtgtgtcaaaactgaagaaccgtggccattgacaaggcgtttatcatggtggtaccaagtgagaacctactaggac<br>caactg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	472	151	NA	intergenic
0	chr15	37054309	37054650	1000085	0	-	Ya5ac2434; RIP_Alu_chr15_037_01	GTGCCCCTAGGATGAAAACA	TCTGTAGGCTGAAAAACATTGC	SINE	Alu	Ya5	tcttagattcctctgcctcttgagtcactagagctatttgactaaggggtgggcaaaataaataccagtctatcatttggcatagaatctttgggggaac<br>atagttccgtgatgtgtaataaggtttgtgtgggataggtgagtagagttgctccttaatttaccatggcagagagagggaatcaaggacagagaggtgg<br>tggctggtataagagacctggaagaaagagtccctccttgaaggtgggcatggcgatgaaactgcccatagccaagtgtgtatttcgccactaagtaagg<br>ctaatggccaatttgggatgaggagataaaaatgatctataaagtgcccctaggatgaaaacatatggcctatttccaagcttaaaaa<font color="green"><u>AATAAATTTTTC<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAAT</font><font color="green"><u>AATAAATTTTTC</u></font>ttataggcccatataaatgatttagcaatgtttttcagcctacaga<br>tataaaatcattttaataatcacaatcagcctcatttttatcccatggattgggataatatagaatagtgcattcccaagtagcaaggataagtattgtt<br>ttgtcaaactgtcttagttgtgcatctgtgtgtgtgtgtgacacatggacgtgtgcacagagacacagagagtcggacaataatataaaatgcatttctt<br>actcaagttactctcagaaatgtttgaaagccacgcctctatggaaatcttcagttattttttgttttgttagccatggcatttgtaaacatttctgaaa<br>attttcctggcttacgtgtaaataccctatttgtttctaaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	457	105	NA	intergenic
0	chr15	54151130	54151434	1000086	0	-	Ya5ac2456; RIP_Alu_chr15_054_01	TGTTTTTCCTTGCCACACTG	ACAGCCAGTCTCTTCGTGGT	SINE	Alu	Ya5	ctttaccccacattatatacataatagtctcagtctattcttattttcaaggtagtattaagtgtccatatttatcaagccacattcaaggaaatcatgt<br>cttaactattttggatgttgcctctccttcaacttgtacatgaaactccagcagatttaatattggcatgcatcatctagtcaaacctctcacatgttct<br>tcaaatcaatcaaatttgggattctcaacattttctgtgtcaataaaaggaatggaattagtagattcgatgaataactgtttttccttgccacactgga<br>cttccagacgccatttggattgggtttagaagatggggaagtttagaagatgtttcttggcctgagtctcttaagaggagagatgtag<font color="green"><u>AAGAGAGAGTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAGAGAGTAA</u></font>gaccacgaagagactggctgttgactgcagggcaccaacagccgccttggtggtggcagtagctggatttggggcagtcgaag<br>tactctgggaggagttacttgaaattgttacaacagttgtttgattggaataaatctgcgtgggtaggagcagtgccagcagcagcagccccagcccaag<br>cctggccaccactgctctgcccacgtcccctccgtcggtgtgcagcgtgtctggctggatgctgggtgcttggagaactgctcgctccaggagggcgcgg<br>gcaaggacgataacaactctttatcagattttcttttgcaaatattttctcccattttgtggcttaccttttcgttctcttgacaatctttttcagataa<br>cagaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	459	142	NA	intergenic
0	chr15	91316803	91317104	1000087	0	+	pAlu15-91102932; Ya5ac2458; RIP_Alu_chr15_091_01	TCCCCAACCTTCCTACACTG	GGTAGCCTAAAGGCATGCAA	SINE	Alu	Ya5	ctttaagatgatttttaaaatatggatttgtagagattagggaagattaaaatttgtgtttcaacataattattggaatgtcttttaaatcttcagtccc<br>tcataaggagcagtgggaagttgattttattagacaaactgttgacaagacttcgagaaagggggaatcgagtgcttatcttctctcagatggtgagaat<br>gttggatatcctggctgaatacctaactattaaacactatcctttccaggtaaggtgatttcagtaattgctgtggggggaatcaatctctctctccgcc<br>tcccctccccaaccttcctacactgggttgtatgctttgcttgttaaagtaggaagtaagagttttcttgtttcaaagaagttaaggtt<font color="green"><u>AAGATTCCAGG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGATTCCAGG</u></font>agggtcttaatttttacttgcatgcctttaggctaccatatgaaagtggtcatgaggagacgattctttttttgaaggtgggtgggg<br>aggattagagaaagtcaaacggggcaagataaaaaaaggatgtcagatggcatcttattgcatgtgtatggtgaaagtagagaggaagtaagtgtgagct<br>caattccaggagcccaaatcctagaaggagagggcagtatcagacattccccccaaaagttgaccctggctgtgaggctgggaacatagcagaacactgc<br>tacttaaaaccttgctactccctgaagtaagtgatgatggcttcccctattttctgtggagttccttaactggagttactgtcttcacacagttatctcc<br>ta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	445	132	NA	intron:CHD2:NM:001271:19/39
0	chr16	56848421	56848721	1000088	0	-	Ya5NBC57; RIP_Alu_chr16_056_01	GACGTAAAGAGATGTTGTTAAGTGAAAAAT	ACTGTAGGAGGTAAATGGAAAGTCAACAGA	SINE	Alu	Ya5	attagtggggaaataaataggcactcttattatatttctgttattaaaaaaaaaaaaagactttatatttccaagcctgagtattggggggaaaaatgga<br>aaaaaaaataaagaagatattataaagtcaggtatggtgcctgtagtcccagctgctcaggaggctgaggcaagaggattgttggaggccagaagttcga<br>ggctgtagtgtgctatgattgcgaccgcgaatagccactgcactccagcctgagcaacgcagtgaggccccatctcttaaaaataaaaaaaaagatgtta<br>taaaatgaaaatatgtattgacgtaaagagatgttgttaagtgaaaaatacagtttacaaaataacatgatactatttttgga<font color="green"><u>AGAAATTCATATATGCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AGAAATTCATATATGCA</u></font>tagaaaattatctaaactgtaggaggtaaatggaaagtcaacagaaattacctctgagtggtaaattgtgaatgttttcaaa<br>tgttcttttagcttaactgtatttttcaacattctacaacatagattgccttgaaataagaacacacacacacacatattactataaaaaataaaatgga<br>atggtatctctagccagactgcaaatcatcctagttcagactttttttctgaacaccaagaggcaaaagcattttcactggccggcctcaggctccagcc<br>ccatcatctccacatggtagaacatcaacccacctgaaatgctactttcaacacattgctctcctactcaagtatcctcagtggggtccagctttctaag<br>a	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	444	126	NA	intron:CCDC113:NM:001142302:2/8
0	chr16	19413837	19414136	1000089	0	-	Ya5-MLS63; Ya5_4532; RIP_Alu_chr16_019_01	ATGAAAAGGGCCCTGAAATC	TTGCAGATGCCTAGGGAAATA	SINE	Alu	Ya5	ttgcatgccaccgtgcctaattattaaaattttttaagggatggggtctcgctatgttggtcttaaactcctggcctcaagcagtcctcccctcccacct<br>cagcctcctgagtagctgcgattataaacgcacaaaaaataattgtaacaaaatgtttcattacctactgttttaagtatttaaaaacatagaaacaacc<br>caaatatccaaatatgtacagaattaaacatcgttcaagatatagtatttagtggtgggctgcgggggagggaagttatgatactatttgtataatatag<br>cctcacttttgtaataaacaagtaaattaaagtgttggtagatacaggtatgtttgcagatgcctagggaaatagatttgc<font color="green"><u>AAGAATAGACACTGAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGAATAGACACTGAAGTA</u></font>ttcatagtgagatgagatttcagggcccttttcatctcagtgggatctacttctgtattatcggggttgtgaaaaacaagc<br>gtgcaagttccatgagggcgggggctttgttttgttcaccgtaaccccagcacctagaaaaagtacaggcatgaaaagtgctgaaaaaatgaatattact<br>tttttttgagacagagtgccactctgtcacctaggctggagtgcagtggcatgattttggctcaccgcaacctccacctcctgggttcaagcaattcttc<br>tgcctcagcctcccaagtagctggggctacaggtgcgtgccaccacacccagctaacttttgtatttttagtagagacagggtttcaccatattggccag<br>	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	401	80	NA	intron:TMC5:NM:001105248:20/22
0	chr16	25531065	25531362	1000090	0	-	Ya5_531; RIP_Alu_chr16_025_01	GCAAACACAGTGCCACAAGT	TGGGGATGTGACCCAAGTAT	SINE	Alu	Ya5	ttgatatccaaatatatcaagatttctcaaaaatcaatatgataaaacactaaaatttaatagaaaattgaacaaacaatataaagagacaatgcacaaa<br>atgaagaaatacaaattaaaagatgtggaaccttaatagtaatcccccaaaatgcaaaataaaacagtgatgtttcatggagtttattattccaatacaa<br>tagcaatgtttaggcaatacagttgagcatccctaatctgaaaatccaaaatctaaatgttccaaaatctgaaaatttatgagggcaaacacagtgccac<br>aagtggaaaataccacacctgacctcaagtgatgggtcacagtcaaaatgcagtcaaaatttgatttcattcacaaatttgttagaaaaaa<font color="green"><u>TGTTGTGTA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAGCCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TG<br>TTGTGTA</u></font>aaactaccttcaggctatgcatataagacatatatgaaacataaatgaatttcatgtttatacttgggtcacatccccaagatatctcattat<br>gtatttgcaaatattctaaaatgtgaaatttgaaatccaaaacacttctagtctgaagcatttcagataatggatactcaacctgtattaagtgcctgtt<br>gatgagccttttcataagctgttggtagatcaaactggtaatttttccagagggcaattcaatagtaccttcatttaaaaaaaaaggaaaagaaaagagg<br>gacaggtgcggtggctcacacccataatcccagcactttgggagggtgaggagggcagatcacttgaggtcaggagtttgagaccagccgggccaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	502	195	NA	intergenic
0	chr16	16481312	16481598	1000091	0	-	Ya5ac2480; RIP_Alu_chr16_016_01	AACCACACCAACCAAATGTGT	GCATGTGAATTGACTGCTGAA	SINE	Alu	Ya5	gtcccagctacttggcaggctgagatgggatgatcccttgaatctaggagttaaaggctgcagtgagctacgacttaccactgcactccagcccgggtaa<br>cagaacaagaggctgtctcaaaataataataataataataataataattattattattattattattattattattataatttcatttaaaagaaaaaga<br>aaacaagaacccagctttacaactacaaggtaagtcaccagcaactgccatgaggacccattgtctaaaccttttaatgtaaaataaaactacattagaa<br>accacaccaaccaaatgtgtagcttcttcagcctttccttatttttctaaggttgtacaaaactattgtatttacaaaaatggcac<font color="green"><u>AAAAGTGAATTCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCGGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAGTGAAT<br>TCAG</u></font>cagtcaattcacatgcatacttccctcacatcttcaacaacaaaaggtattctaactctaactctacagagcttggcagttttcaggagtactggg<br>gacggattttgcaggatatatctctgtattagtccattttcatgctgctgataaagacatacctgagactgggcaatttacaaaagaacaggtttattgg<br>acttacagttccacgtggctgtggaggcctcacaaacatggtggaaggcaaggaggagcaagtcacatctgatgtggatggcagcaggcaaaaagagctt<br>gtgcagggaaattcccatttttaaaaaccatcagatctcataagactaattcactatcacgagaacagcacgggaaaaacctgtccccat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	421	131	NA	intergenic
0	chr16	71310800	71311098	1000092	0	-	12465; Ya5ac2525; RIP_Alu_chr16_071_01	CTGAGAGCTCCACGAGGGTA	TCCATGGAAGAAGCAACACA	SINE	Alu	Ya5	ctccagttccttgtctctacactagccatgctggcttcctttctctgtcattcccagtctttcttgtcccagggctttacacatatcggtacctttccct<br>ggaaggctcctccctccctgctttacttttccttcaaatatcacctcatttatcacttcattaagaaagccttttctgactagatcaaattttcctgtta<br>caaactcatgttcctttctctcatagaacttattacagtggcaggtttacatttattgtgtcatttttaaattcatgacagactcttcaaatccactgag<br>agctccacgagggtagggaccatgtctgtttttgattaccactgtattctcaaaaggtagcagaatgaatggaaaaagtaggagtttaacaaac<font color="green"><u>ATCTAT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>A<br>TCTAT</u></font>gactgaattatgaatgaatgaatgctggggaatggcagccaatggtataataagttaaaagatgtatgttgtgttgcttcttccatggatatcaa<br>acacccaaattccaaaggttatacacagtgaacaaaaatgaatgacagggattgtaaaaatgtgggaggtataaagtacttcttttaggttgataaaaaa<br>atactgcccccccaaagaaaaattgttatttgaaaatgatagaattatgagtgttatttgtattatttttgctcagctaaattttctaatattttccata<br>atagtgtattaatattgtaagcatgttattttttactgcaacataaaatcattctggcttcagtgcagcagaaaaccaaagtacctaggaggggcagca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	194	NA	intergenic
0	chr17	58919633	58919634	1000093	0	-	Ya5NBC102; Ya5ACE; RIP_Alu_chr17_058_01	TCCCATTTCTCTAGACCTGCTG	CCCATAACAGGTCTTCATATTTCC	SINE	Alu	Ya5	acacagccaggctctcccaacaccacattacctgcctcctccagggatctaccttttcctaggcttggggtttcacagcacctctttgaggaaaatgaag<br>ggacccaagtgccagtgatgttggcagcagggactcaccattgagccgggcagcctggttgatgagttccacgtatttcgggtaaaactggaggatggct<br>ctccccgccttgtctcgccagccctcccatgcccataacaggtcttcatatttccgggatgtggccatcacattcgtcagatctggtaggggtttgaatg<br>ccttgagctccagcccttagctcacctctgcttgtaaggggagctcagagaatttcagagctggaataaaattggcgaaaccacat<font color="green"><u>AAAAGTGACTGTAT<br></u></font><font color="red">CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC<br>TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG<br>CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGTGACTGTAT</u></font>aggcagcaggt<br>ctagagaaatgggagaaaggatgggagtggtctccagcagtggcttacagagtccccggcctggggcacatgctgcagacacctgcagggcctcagcagt<br>cctgtgaggggcgtgcttgagtctctctcctctcctttttttttttttttctttctgagacagggtctcactctgttgcccaggctggagtgcagtggcg<br>ccatctcggctcactgcagccttgacctcccaggctcaagcaatccttccatctcagcctccctagcagctaggactacaggcatgcaccaccacatcca<br>actaattttttgtattttatttgtagagacggggtcttgctgtattgccctggctgggctcaagcgattctcatg	Other	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	483	194	Hypertension	intron:ACE:NM:000789:15/25
0	chr17	14688276	14688578	1000094	0	-	Ya5NBC120; RIP_Alu_chr17_014_02	GGACCACATGACTGAGTGTAAAGT	GAGGTGGCCTCTTAACCATAATTC	SINE	Alu	Ya5	accatcctgcagtcttggctgagcaccaatttgccagctatgagagtgggccatcttcacagtggatcatctgacccccagtcaagctgctccagcttat<br>gctgcatgtagactggactagcagtcttcacatagtccttcccaaattgcagtgtcgtgagcaaaataaataattgttgtcttagcctgaagatctgcga<br>tggtttgctactcagcaatacaaaactgatggaccacatgactgagtgtaaagtatatatttgagcaatgaaaataagatgggtgagtggtattgggccc<br>aattatggataacccttatgagggaatcagatgtgttctacttggcaatattaattataagagatataccagatggaggaggtt<font color="green"><u>AGAAATGACATTAAGA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAATGACATTAAGA</u></font>gaccagaattatggttaagaggccacctcattaactccagcatgagttgataaagtctagcattaggtctatcatggtaga<br>aaaaagcagataaggcagttgagacattaaaaattaccaatagtacacattttctgaataaaaatgagctatgaggttgggattaacactgctgagtctt<br>tcagcttttttttttgagatggagtctcattctgttgccaggctggagtgcagtggcacgatctcggcttactgcaacctccacctcctgggttcaagcg<br>attctcgtgcctcagcctcccaagtaattgggactacaggtgcatgccaccacgcccagctagcttttttgtatttttagtagagataaagtttcaccat<br>gtt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	518	199	NA	intergenic
0	chr17	12137318	12137621	1000095	0	+	pAlu17-12139548; Ya5NBC160; 3797; RIP_Alu_chr17_012_01	CTCAGCTGTGCCTGATACTCTATAA	GCCTACTGGATAAGTCACACATTTT	SINE	Alu	Ya5	tttcactgtgttaggcaggttggtctcaatctcctgacctcatgatccacccgcctcggcctctgaaagtgctgggattacaggcgtgagccactgtgcc<br>tggccctccaattttattaataaattatcacccaggcagcgtcttaggcaattttctggttgtccatgagacactctttaagctcagaattttaggccat<br>aaaatatagttcaaacgatgctataaagagttaagagagtttccaaagaatgttgggtagaccttgagaaactatttagctcaggcgtgcaatgtttgtg<br>tgacttctcttgctcagctgtgcctgatactctataaatatgccttatttatcttcttcatattttcattatttaatgttcttcttt<font color="green"><u>AAACATACTTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAACAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCGGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA<br>AAAA</font><font color="green"><u>AAACATACTTTTG</u></font>gggctcctatattgcccagttacagctctttttaagtttttatgttccaatataacttaaaatgatttcagggcctttggtaa<br>tcaatagtgttatcaaattggggggataatatatcaaaaatgtgtgacttatccagtaggccaagtattgaagcatgggcttccatgggacagcagttat<br>tagcccatcaggagggaaaagccattgtaactttccttatgcttagggaatcctgagtctcatcttcccttatgcctgtcctactagaattctatggttt<br>atatcataatcttcctcaagaagattgggtctttttgctcaaatttctaaaatttgaaaacttaacatccataggactgttttttaaacgtgaggatttt<br>gatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	551	234	NA	intergenic
0	chr17	62361017	62361318	1000096	0	+	Ya5_421; RIP_Alu_chr17_062_01	GAGGCTGTGACTGCAAAGTG	TTCGGTGTTCCAAAAACAGAC	SINE	Alu	Ya5	ttgaaaattggcagatttgtctcttcagtacctgctatagagctgaggcaggaagggcctgacatcccgtttacattgacaacaacaaatggtgtcagca<br>ccatgctgaccactgacactgatgacattccttatctcagcaatcttaggaggcaggtcctggatcagttcccatatttggatgaggaaatgggagccca<br>gagaggtgaaagaccttgcccagggtcacacagctcatgggtagcacagctgggattcaaactcaggaggctgtgactgcaaagtggatgttcccgctgc<br>agcaacaggcagccttcccaaggatcacttctcaattgtaggatgagtgggcaaaagagccagtgatcctgcacttctgggcaggt<font color="green"><u>AAGAAATGACATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAATGACATCT</u></font>gtgcaagattagtcatggcaagtctgtttttggaacaccgaagtctgttctcatgctgctaataaaaacataccccagactggg<br>taattataaagaaaaagaggtttaatgaactcacagttccacatggctgaggaggcctcacaatcatggtggaaggtgaaggaggagcaaaggcacatct<br>tacatggtggcaggcagagagagggagcatgtgcaggggaactcccctttataaaaccatcagaactcgtgagacttattcactatcatgaaaacagcat<br>gggaaaaatccacccccatgattcaattaccccccaccaggtccctcccatgacacgtgggagttattacaattcaaggcgagatttgggtaggaataca<br>gc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	177	NA	intergenic
0	chr17	64599262	64599557	1000097	0	-	pAlu17-67552076; Ya5_435; RIP_Alu_chr17_064_01	CTGGCGACTAAGGTGAAAGC	AAAAGGTAATCCCTCTATCCTCTTG	SINE	Alu	Ya5	ataagatctgggaaagaaagggtagtgctcaatacatacttggctgatcaattgattcttaaaacaaacaaacaaaattatccttattccttcccatttg<br>ccagtaaaaaaaattgtaaaataaaataagtccatcacaataaaaatacacaatctcagaaaagtcatttgtttggaatggggaagaaatggagcaggaa<br>ggacaatgagaaagctccacagtagtctggttgagagacagtatggattgtttggtttttttttataatagccatgtaactttcaacatatacaggtttt<br>tattcattagcaatattgttaccttagccataaaaaggtaatccctctatcctcttgtcttggattaaatttaataatacacgtc<font color="green"><u>AAGAAGTCTATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>AGTCTATTTGG</u></font>tcattttagctttcaccttagtcgccagtctttattaagaattttctattggggatcataatgtattcttgttaacaaaagcttcttcc<br>ctattgtctctaaaaggagaaactatcattgtcaaatgggtatatctgcatatgggaacattatgatatacatcatgagaacacctgcatcttaaatgtt<br>ttacaaaatatcaatgggttgagtatgtctgatacaatatatttgaacttgccttgtaggcctccaccatcatgttttccatcactttaatcaatcattt<br>tgacctaagtatattgattaccaccatggtattggttccttcatataccttgcttggatttaaaacttttttggaagtggtaagaaatgttaccaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	407	96	NA	intron:ABCA6:NM:080284:25/39
0	chr17	13161224	13161529	1000098	0	-	Ya5_454; RIP_Alu_chr17_013_01	AAGCCTAGGACACACGCATAA	TGCTTGGCACTTAGTGTTAGGA	SINE	Alu	Ya5	aaacaacttctgcttgcaaaaatggacccactgtccacattttttgaaagcagcacaggtaaagaacaaagccttaagctttcactccatcgagtcaaag<br>ttcctagcagtctaagtgcagatgcattataatttgtgggttttgttgtttgtttctagaggatccctccagaaaatcttctttatcttcttcatgacta<br>aacttccacagggcctgtcttgtgtctcataagcagcttccatctttctccataaacacctcttgtattttcaaacataatggcgcatctcccacgaaaa<br>actgaaagacaaatagggatatgtaagaagaaatgcttggcacttagtgttaggattttcaacactaagttgttcatgt<font color="green"><u>AAAGATTCTGTCTTTACCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AGAAAA</font><font color="green"><u>AAAGATTCTGTCTTTACCCTT</u></font>tcattatgcgtgtgtcctaggcttttcaagtgaacatcagcatacaagttatttgcttagaacagagctgtaa<br>gagtaaaatgcatgaacacagtcgaagcatctggttgggaccatggccacctgtcagcattggatgctccctttggtgtgtttcagtgaaaatgaataaa<br>ccgcatttccttttaagccactgcattgagttgggtctactttttatagcagtctagtcttaccctagcaaatacattctctcagctcaatgtatattca<br>tgtgttgcttaacaacaaggatatgttctgagaaatgtatcctgaggcaatttcttcattgtgcatagcctactggtactaggctgtgcacaatggtcta<br>acctat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	59	418	91	NA	intergenic
0	chr17	78182448	78182749	1000099	0	-	Ya5ac2539; RIP_Alu_chr17_078_01	AGTTGACAGGTTTTGCCACC	CAAGACAGGTAACGCAGCAA	SINE	Alu	Ya5	ctcagctcctgagtggctgggactacaggtgcctgccaccacgccggctaatttttgtatttgtagtaaagacagcgtttcaccatgttggcccagatgg<br>tctcagtctcttgacctcatcatctgcccgcctcagcctcccaagcattaaagcttttagtatgctgtcttggagttgacaggttttgccacctcttgaa<br>atgtgaattcaagtatttcatacattttgctgagttagcttcctagggtgttgtgtgctcagcctttatgaaacagtgaacatgatgacagtaaactgag<br>agaatttggaaacctagcactcactatttttttagccagtcacctttctcatttctgacgatagttagatataaattgctgatt<font color="green"><u>AAAAATGAGTCCTGTA<br></u></font><font color="red">GGCCGGGCACAGTGGCTCATGTCTGTAGTCCCAGCATTTTGGGAGGCCGAGGCAGACTGATCGCCTGAGTTCAGGAGTTTGAGATCAGCCTGGCCAGCAT<br>AGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCTTGTAATCCCAACTACCTGGGGAGGCTGAGGCAGGAGAGTGGC<br>TTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCGAGATCGCGCGACTGCACTCTAGCCTGGGTGACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATGAGTCCTGTA</u></font>ttcccagctacttgggaagctgaggcaggaggatcatgtgagcccaggagttcaaggctgcagtgagctgtgattgtacctg<br>tgaatagctactgcattccagcctgggcaacacagtgagatcttgtctcttacaaaaaatagaaaattgctgcgttacctgtcttgactttctcttttct<br>tttttattgtaaaatatacatattaacttgtaacattggtctttttaaaactatcatttcagaatttctagaaggaggagttggccatgttgaaatgtta<br>tttcgctgcaactatttagctttagttggtggtggaaaaaagccgaaataccctcccaacaaaggtactgtaattgtgtattgaagaatcatgcctcacg<br>tg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1018	713	NA	intron:WDR45L:NM:019613:2/10
0	chr17	65671535	65671852	1000100	0	+	Ya5ac2571; RIP_Alu_chr17_065_01	CCACAAATTCTTAAAGCCCA	GCCACAAGCTACGAGGAAAA	SINE	Alu	Ya5	acagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcagagtgttccatggaagtcag<br>tgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaatgactataaatcatgctgctataa<br>agacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactagattaagaaaatg<br>tggcacatatacaccatggaaaacccacaaattcttaaagcccacatctgaaaatctagacattcaagtatgtacattttctttc<font color="green"><u>AAGAGTATCATTACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGTATCATTACA</u></font>gtgttgttgacgttactgaaaatatgttttgcattttcctcgtagcttgtggcatattccataaata<br>tctacaatagtgattagttttggctgtctgaagtttgtgttgtttgttttaattttttgttttgtttttataagttctggaaaaagtcaagttgcatgac<br>tctcatgatcttccaaagatgtattactaaagcaaagagacattcttacaggtgttttaaacatgagattcagtttgctaatggtggcacctctcactgg<br>aaagcatttcttactgtgctgtagagggtgactatggatgctggtggcagtctcactttccctagtggctactgaacgtgtttgtgtctcctttagaacc<br>aatagtttctaatgaata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	462	136	NA	intergenic
0	chr17	71558420	71558421	1000101	0	-	Ya5ac2577; RIP_Alu_chr17_071_01	GCTTTTTCAGCATGTTTGCTT	AACCACACACTCACTCACGC	SINE	Alu	Ya5	acgtctgtggcgaaaagaacttagtgtgatatttaggagaactgtctttttggtgggtattgattagtcttttttattatttccttgtacctaaaagaaa<br>caatctttgagttgggtcacatttgtaaaaggtaattgtgttggcatacagtagagcttgacaagtttgttctggaaggaaaagataaggaaagttctgg<br>tgtgctgtgcttcagtgtagagtgtcccaagtccagtctgtaaggcccctcaaggggtgccaggtcctgagcagagggtgaagcgctgcagggaagtagc<br>aggaagctgtgctgggaagagacgtaaagcctttgctaagtctcagatcagttatgcagacagctttttcagcatgtttgctttt<font color="green"><u>AAAAATAGAACTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATAGAACTCCC</u></font>ctttccatatgaataatgaatgactaaggctatgagaaaccattatatggtagagaacagtaacaattaaaatgatatctggt<br>gtggcgtgcgtgagtgagtgtgtggttgggggactccatgtgcgattttgctcccctcccattaggtgactatggtttgctcaaaggaaagtctcttact<br>ttgatctgcccttgtttaggctgaaagcgaagaaactaaggagcgcctgtttgaatcaatgctcagcgagtgtcgggacgccatccaggtggttcgggag<br>gagctcaagccagatcaggtaggaccctcagccgagccctggttcttgctctgggcgggtccaggtcagcctgtgtccccttctcaggtggaccccagtg<br>ct	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	465	148	NA	intron:SRP68:NM:014230:8/16
0	chr18	68047755	68048055	1000102	0	-	Ya5ac2584; RIP_Alu_chr18_068_01	TTCCAGAGATGACATGGACA	AAAAAGAAGCCTGGAGAGGG	SINE	Alu	Ya5	gaagtaataaaagtattcatttgaaaactgcctttatgagtaaatgttacatttaatgattgtatttaaatgagtgtgttgaagtaaaacagttcttgtg<br>acgaatacattcagggtgttaagacaaaataaggttccattatttagggtctaagtgagaaggaatagagtccctaagaaaagtctccatggagtttctt<br>catgaagtcctttgggcaatgacatcttagtaacctggttacaggaatgcttaaagcaatccctaatgctataataatgacagtgggttttctttccaga<br>gatgacatggacatcactcttagctttaggacacaatttatctttcccttccagtagtaggttgttaccagatttgaaataaaat<font color="green"><u>AAAGAGTCAATTAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAGTCAATTAGT</u></font>acagttagtcctggattttctcaataactatacatacttggaaaatttattcaccctctccaggcttctttttttctccttgcc<br>tgtgtaaaatggaataatctctaaaaagatttgtaggtctaagattctaagttacaaaaatgttcacgatgctattctaaatcacaagtgcaacatcagt<br>acaggtccttcgagaagcatacaccaagatggaattaaacttgcaagaaatatattggggtattgccctaggaaatgaaacaaggagggaagtagagtag<br>gctacattagctgtcagaccacgatgctggtcagacttctatgcaggaaagtgggattgtaggttgtaggatagttctaataaaatattggcaaggctat<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	496	180	NA	intergenic
0	chr18	11961930	11962237	1000103	0	+	15175; Ya5ac2613; RIP_Alu_chr18_011_01	TGGGGTTGGCATTTTTCTTA	CTCTGCTGCAGCGTGTCTA	SINE	Alu	Ya5	ggacaaagaatccagttttaaaatacgagcgggcagagccggggactgtggtgcattcctgtgatcccaaatactgtggaggctgaggtaagaggatcct<br>ttgagcctagcagttcaagaccagcctgggaaacatatggcgactctgtctccaaaaacccaaaatcaaccaaaacaaaacaaacaaaacaaaacaggca<br>ggcaggagaatttgtcagtatatttccacctccatttatattcaatcccaggaaccttcctcatgcaggcagtgagatttgaggcgtaaattaccctgaa<br>agtgggagtggggttggcatttttcttaagaactgggaacaaagcatttctccttgggttaatgctgacaaacgaaataatgcaatt<font color="green"><u>GAAAAAGAAATAA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAAAAGAAATAA</u></font>tacggatacggcagggggtatatgtactttccccttaattttgccgcgaacttaaaagtatagaaaaaaaatagacacg<br>ctgcagcacagcctgtgtctctcctccgccccgtagacggaagtgcagaggggctggagggacgaggctagagcgcggcaaagcaggcgggagaactaga<br>tcccagtccaggtgaacatccaggcccacgcgcactcccctcctgcagaggcaaaggtgagggtgagggttgtgccagaaggtgacttttcctggaaacg<br>tttagggcccgggccgcattcctgcgggtcttgggtacaggcaagctcctggtttccttcctcaggacacctgcatcgggggagtggcgcggcagccgaa<br>gagagaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	182	NA	intergenic
0	chr19	56149289	56149596	1000104	0	+	Ya5NBC150; RIP_Alu_chr19_056_01	AAATGGAGACACAGAGGTGTAAAGA	CCCAAACTGCATATTTAAAGGGTAG	SINE	Alu	Ya5	ctgcttgttcgtttgtttatttatttatttgagacagagtcttgctctgtcgcccaggctggagggcggtgatgtgatctcggcccactgcaacctccgc<br>ctccagggttcaagtgactctcgtgcctcagcctccagcatagctgggattacaggtgtgccccacgacacccggctgattttttttttttttttttttt<br>ttttagtaaagacagagtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgattcacccacctctgcctcccaaagtgctggaattac<br>aggcatgagccacggtgcctggcccaaactgcatatttaaagggtagagtctgatggctttaggtacttgtcacatcagcatagtc<font color="green"><u>AAGAAGATGATCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAGATGATCAT</u></font>agacaccaccctgaaaactgtgcttctgcccctttgcgtgtatctgggactctgttaatctctctttctttacacctc<br>tgtgtctccatttgtgtctttctctatcttctcttttctctctgactctgtgtgtccctgtgtcccaggctctctgtgtgttctctctgtgtttctgtag<br>ttgtgttattctgtctctctctctctctctctttcttccccaccccttcctccttccctgtctttctgcctccctctccctgcattttaggcaggggaga<br>ctcaagccactttgcagagggagctctcaactccttctcttgccttcactctgggcccaggccgtggagcacaaagaggcagggacccagtctgggaatc<br>tgcaggtg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	491	169	NA	intergenic
0	chr19	20037730	20038026	1000105	0	-	Ya5_416; RIP_Alu_chr19_020_01	TGCATTCATCCAGCACTGTT	GCATAAGGCCCAGTCAAGAG	SINE	Alu	Ya5	caagctttatcctacataaatggaaatgcagatataataagcaaatgagataagcaaatcaatgaaataagcagattgatacaataagcaaattgcaatg<br>gaaagaggagaagggaaaagagatatatatattatgctcgccagactatggaggattcaccaccagagtgggaagcaacagtctgggctccagaatcaga<br>cactcatctatgcacagatgaggagaggtctcatgaagcttgggcacactctgggaccctagctctttggtaatgagttgtttggcataaggcccagtca<br>agagagtcgttcatgattgggctcaagcaacacaaaaaagtcaacttgcttttgcaattctctattgtttttcaacaactaatatat<font color="green"><u>AGGAATAGATTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGAGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGG<br>AATAGATTGA</u></font>aatagagatatctccaaaacagtgctggatgaatgcatcaaggggctcacacaacctgttccaggacttggtgaccattggttgtgtcca<br>ttttcaattgagttcaaatttaatatttaacttttcctccacaaattttcctgtcttgatgaattggctctgtctaggcaaagggcaaggtgaacccctt<br>gggcagttacactactctgccttctgggttcaagtgattctcctgcctcagcctccatagtagctgggactacaggtatgcaccaccacacccagctaat<br>ttttttgtatttttagtagaaatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcggcctcctaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	153	NA	intergenic
0	chr19	58512615	58512916	1000106	0	-	pAlu19-58496721; Ya5ac2662; RIP_Alu_chr19_058_01	CCAAGGGCCAAGTCTATCAA	CACTTGAATTTCATACCAGCCA	SINE	Alu	Ya5	aaactgtacagaccaagaggaagtggggcaacattttcaaagtgctgaaagaaaaaaaaaagctgccatccaaaaatattatacagcaaagctacccttc<br>aaataggaagaggaaactgtctttcccggacaaacaaaagttgacagcattcatcaccatcagatccagcggacaagaaatgctacaaggagttattcaa<br>catgaactaaacaccaattggcacacacacaaaaattgaaggcacaacacccactggtaaaatgaagtataaaaggaagcccagaatactctaatactgt<br>aattgtgccttgcagtccactcataactctagcatgaaacccaagggccaagtctatcaaaaacagtaatacctacagcaagctgtt<font color="green"><u>AAGAGTGAGGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTGAGGCAA</u></font>tacagaaatatatagatggagagcacataagtcaaaagtggctggtatgaaattcaagtgtaaagatgtttttcagtttttcttt<br>gtttctattcttttttgtgatctaagataagttgtcatctatttaaaataaatgcttgtatttataagatatttcattgttaattcttttgtttgtttag<br>ttctctgttatttcaagtaaattttaataaaatgagtggttgtgcttgcttgctcgccttagggatatgagaacacccaccccaaaatctctttctttct<br>aacatgatcaattggcatcgtcacatgataaagaaaaaaaaattaccctctactgatttagatcctgaacatctgctttttttttcttttttttgtgaga<br>ca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	435	120	NA	intergenic
0	chr19	23112644	23112945	1000107	0	+	pAlu19-23096752; Ya5ac2670; RIP_Alu_chr19_023_01	TGGGCAGAGTGAATATCCTTTAG	GACCTTGGTCCTTATTGTCTTCC	SINE	Alu	Ya5	gtgctatgtttaagtagaagcattgagaatgggcacaatatagttttgctttgttctctgtgaattttaagaagcaaacacctcttcaggtttttataaa<br>ctggcttcaagatgtaaagatattcttttgttgggtgcccagggtgatagaatgccctctgggcttatagtggagaggggttgtagcttggtaacaaggc<br>tgctgggtcttcactggggtccaactttagttgacttgttacaaggggcttgggtagttataattcccattatatttttgggcagagtgaatatccttta<br>ggactttgctctgtagggtagacactagggcaggtttctgcaattggttgtgcatatatggtgggctttatatcaaaatgtagat<font color="green"><u>GAAAATGGCTTTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAAATGGCTTTCAC</u></font>tgggtaccagaaaggatttccccaggtctctgtgtgggtttccatgtaggtagagctgaccatgaactgtggctcaaagagct<br>ggaactgagtcatgcaagtgcttcggggaagacaataaggaccaaggtctgcagtcttgtctgtgtggctataaatgagtgtctttctccaggcctctga<br>aaaggcaggacctcttccagactttggctgggaagagttttggatggtttcagagtaagttcaaaattctcagtgggaccaagttgggtggataattttc<br>tggtctgtagccaagaacaggggtcctgttgtttgccacctgaatgaaagcctgccttctaaaaaggatgctcctcaatcttgggcattagcagagtttc<br>ac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	476	159	NA	intergenic
0	chr20	35249038	35249335	1000108	0	+	pAlu20-36453952; Ya5NBC148; RIP_Alu_chr20_035_01	ACAAGATGACAGATGTAAACCCAAC	AAGGTGTTGTCAGACTAATCTATCG	SINE	Alu	Ya5	agtcaggtcatttgtcctggaatattttccacattctgcctttgattaattgtatcttcatgatgtttttgaacatatttccctatcctttgtatccctg<br>taaactgatagttagctcttgaggctaaattatattcagggttggttttcttggtgaaaatatttcacaggtggtgctgtggacttcctattaatagata<br>cataatatctggttatttcacttttagtgatgatgaagttgtaaattaaggtgttgtcagactaatctatcgcttataaatagtatatagtagggatttg<br>ttttttcatccagtctgataatttctaccttttgattggggagtttattccatttatttttttattttgattctttttttatgttt<font color="green"><u>AAGATCAATCATTT<br></u></font><font color="red">GGCGGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GATCAATCATTT</u></font>atgtttaattatattgttgggtttacatctgtcatcttgttatttgtttcctattggcttacctgtttttccctctcttttcctgtct<br>tatttttatattttattttgttttattttatttttttgagacagggtctcactcttgtcacccaggctggagtgcagtggtgtgatctctgctcactgtg<br>acctctgcctcccgggttcaagtgatcctcccatctcagcctcctaagtagctgggattacagacgcgcaccaccatgcctggctaattttttgtatttt<br>ttggtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatttgccctcctcggcctcccaaaatgctgggattac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	505	193	NA	intron:RPN2:NM:002951:2/17
0	chr20	36572685	36572983	1000109	0	+	Ya5NBC45; 3071; Ya5_5642; RIP_Alu_chr20_036_01	TAGGGTAAGGAATATGTGCTGCTTTAG	GTCTCTGAACGACTATGTGAGCAG	SINE	Alu	Ya5	aactcctggacttaagcaatccacccacttcagcctcccaaagtgctagggttacaagcatcgagccaccgcacccagcctggaatttgtctttagttca<br>catattactgcattaaattcatttgtttttatatcagattcacactcttattttaactttataatatttactgatatttagtaggtctaatgtctttttc<br>tctttttccttctcttagaatatttatctcttcttgcctgtttaacatttcagatcaattttagaaccaatttttcaagttacaaaacataagcaaacag<br>aaggaaaaacctcaacgaaaccttctggggtttggattgtgtattatttagggtaaggaatatgtgctgctttagcaaatgaactt<font color="green"><u>GAAAATCTTTTATA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>G<br>AAAATCTTTTATA</u></font>aagtctggagtcaggactggctctgctcacatagtcgttcagagacccagctggcagaggctctttcatcttcaacagatgactcca<br>ttagggcctcagtgttataagcaggattctcgtatctggctagcagatggggaacagagagcaaggaaaattttgtgggagggttttatgtgtcaggcct<br>tgaagtaatataaatcactgttactcatattccattagccacaactcagacacacaccacacttaattgcaagagaacagagaagaaaagagaaagtggt<br>gaacagctagccagactctgccgaagatgagaattgtattaagcttgtatttatatttaggaaacgctgatatctgatattgagtctgcctttcttttt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	591	265	NA	intron:KIAA1219:NM:020336:6/30
0	chr20	14477082	14477382	1000110	0	+	Ya5_5672; pAlu20-14476982; 2845; RIP_Alu_chr20_014_01	TTCAATCATTTTCACCTTTTGC	GTGAATTGCCAGCATTCTAATC	SINE	Alu	Ya5	aattaaagtgatggtaaaatagactacacctcttgataagaggagaggcaaagccacgtcgcaaaggggcttgtgtaaaaaattggaggaattattgggg<br>ccatatttggagacttggccccttcacattttgtatctgactttctcataagacttttatttcttcagagcaagggctatgccttcttcacgttttcaga<br>atcagagtatgaaaaatatttgctgtttcttgagtaaatgattactccatgatagttttccctctaccccaactgccaattataaactcagatttacatt<br>cagaatactggtgtgaagcatttctactatatctttttttttcaatcattttcaccttttgcatttatcttataaatctaacactata<font color="green"><u>AAATACATTATC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTTGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATACATTATC</u></font>ttagttttttttttttagattagaatgctggcaattcactgggaagtgatccctggaagtattaaatgaacagaggagtgggagaag<br>taaaaaagggaatggatgaggctaaaaaaagggtgacaagcaaattaacctggagcaactggggttgtttctactggggaactctgcacgtgcctcggag<br>ctatcccacctgaagggtgagagcactggaggacatgaatttcccagaagttatggtgctccatgattacaggcaaagcaagcccactctagtggccaga<br>gagagccctcaggcaaagagacacatgttctagaagtcataccaacagcactgaatggtccaagtcatggagatctgggcagtgcaccagcaatgactgc<br>c	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	412	100	NA	intron:MACROD2:NM:080676:4/17
0	chr20	32579493	32579805	1000111	0	+	Ya5ac2704; pAlu20-33784411; RIP_Alu_chr20_032_01	GGTTCCTGTCCTCCACTTCA	TCCTCTCCTCCCAAGTCTCA	SINE	Alu	Ya5	aaaagtctaatttattagagccaaagcaagacctgaggaatctgtgtgtttacgaagcaccccaggagattcttatgatcagacaggtttagaaaattct<br>gctttaggggatagattctaatcagaagaggctgcagtgagagccacaggcctaagattcacagcagttctgtctccttccgaaggccttcccttggaga<br>gactgcctcagatcatgttttcagggctgtggtccttaaacccaggggtcctgtgctaccctgggagtagaggtagaggctggggttcctgtcctccact<br>tcagtcagagcacacacactaagaaccatcagttcatgtttctacattggttttaatttggaaaggggtttggccaattt<font color="green"><u>AAAAACTACCCTACTGGAGT<br></u></font><font color="red">AGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAACTACCCTACTGGAGT</u></font>ttacaaaaataacataaaccagtttatgtgagacttgggaggagaggagtccactgagacactgctg<br>ctgatagagcagcgtgaccagtgaaggaagaccaggaccatgcctgactcacctctgttcccgtgtcattcaccacaggccgcagagtcaggtcagtgaa<br>cgttaaatgaaccaaccacagtgggtgttgccatcagcccctttgatttggtaattcttgaggactgtgttgagaggaaataatcccaaaggaaaaaacc<br>tgaaatttttgcaagcatgttagatgccataatcagtagattaataattgttataatggctgggcgtggtgcatggttgctcacacctgttctcagcact<br>ttgggaggccatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	165	NA	intron:DYNLRB1:NM:014183:2/4
0	chr20	7222351	7222649	1000112	0	-	2716; Ya5ac2706; RIP_Alu_chr20_007_01	TCAACTTGGCTTATGTCTGAAAA	TACCAAAAGCATTGGCATCA	SINE	Alu	Ya5	aaacatcagaagattgctcttagggaacttcctgggatgatggtaattttctctaccttgatagaggtttgggttacacaggtctatgtatttaaaatat<br>gcttactattccattccacttcaaaagacatattgaaatgtagttgataatatgcttgctaaagtgtttaggggaaagcatcctgacatctgcaatttac<br>tttaaaatgtacaaaaaactaagatgaagtatagaaaaatggagggatcgataaatggataggtttgtgaaaaagcaatatagaaaaatgttcatgttag<br>agtctaggtagttgatatgcaagtgtttactgtaaaatttattcaacttggcttatgtctgaaaatagttgtataaaatgttggtg<font color="green"><u>AAAAATGTATTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAATGTATTGTC</u></font>attcctttttttaaaaaaaaataaagatccatttgtattaataatcattctctttttatgatgccaatgcttttggtaaagttaggg<br>gcatcaaaatcattaatagatgtcttagtctgttcaatcttctgtagcagaatactatagtctaggtggcttaaataatagaaatttatttctcacagat<br>ctggaagctgaaaaatccaagatcaaggtgctgtcacatacggtgactggtgagggctgcttgctgatttatagatggcactttcttgctataaactcac<br>ttggagggaagaatgaggcaattctctagagcctcctttataagtgcactaatctgattcatgagagctgagccttcatgacctaatcaccttccaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	136	NA	intergenic
0	chr20	59959698	59959988	1000113	0	+	Ya5ac2709; RIP_Alu_chr20_059_01	CTTTTCCTGGGGCACAATTC	AGGCCTACAGCAGTTGCCTA	SINE	Alu	Ya5	cccaccctctccccttccccagccctgcaaccgcccctccacagccctgggccctccctcccacactctccccttccacagccctgggcccctccttccc<br>accctccctcccaccagccctgggcctccccctaccgtcctctcccctcccctagccctgggcacctccctcccaccctctccccttccccagccctggc<br>ccctctgtcccattctctcacctcccttagccctgggactccctcccagccctgggcccctcttcccaccctctcccctcccccagccctgggccccctc<br>ccaccctctcccctcccccagccctgggcacccccccaccttccttttcctggggcacaattcacatgtacactgacttgcataac<font color="green"><u>AAAAAACCACTCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAAAACCA<br>CTCAC</u></font>acggttaatcatgggtgcagttgataattacaggcacaattaaccacttgctaattttgagggtgcgagcagttaattacattcacaattaggca<br>actgctgtaggcctgggaccggagtcctggtggggggacactccttgtaatcagactcccagggtgaggccctgtggtgggggtgagggtcaggtgatct<br>gcgaagcacccccctcccagcttcaagtggggagcttacaggcctagaggtcagggcctggcaaacgacctgaaaaatccagcttgaggccctttccagg<br>gagccccagaggccttctcttgggtcatttcccaggatgggggtcgctgtcactcctctgtcccaggaggattcagagaggtcagttcaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	166	NA	intergenic
0	chr20	19009431	19009729	1000114	0	-	Ya5ac2715; RIP_Alu_chr20_019_01	TGCTGTCTGAGTGAGATGGG	ATGAACCTTCGAAATGCCTG	SINE	Alu	Ya5	caccaaaagttccagatgagagagaaaggcagcccagacccaggagtaagagggggtcttgagaaatgattggattatggatttattttgtgggatagaa<br>aaatgataaaggagtcaaaatttgactccaaggtttggtgtatttgctaatgaaaagatgacattgccatttactgagccagggattcctgcagaaagag<br>agttttgggggtaggggagatcacaagtttggtttcagacattgttattgactaaatatttacattcccttcaaaatttatatgttgaaacataatcccc<br>catgtgatagtatttggaggtgaggcctttcagaggtgattgggctatgaggtcggagctctcatgaatgagatcagtgccctcat<font color="green"><u>AAAAGAGGCCCTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAGAGGCCCTGG</u></font>agagctccctcagccatgtaaagatacggcaagaaggcaccagctatgaacaaggaaggggcccctcaccagacaccaaatttacca<br>gcaccttgatcttcaacttcccagcctccagaactgtgagaaataaatttctgttgcttataagccacccaggctatggtatttttttacagaagcctga<br>acataatgagacaaagatgtctctgctttgagatgattatttaacatccaagttgggatgtctagcaggtatttggatattaagcggcatttagtgagag<br>gtccaggcatttcgaaggttcattttatgtgcaggaggcacatgtgagcagataaacaacacagagcttctctttgttgcaacactgggttcaaaccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1180	867	NA	intergenic
0	chr21	23664118	23664417	1000115	0	+	Ya5NBC351; RIP_Alu_chr21_023_01	TTCCTCCCCTTTTTCCTGTT	TGTCAGTATGTAAACCCATGCT	SINE	Alu	Ya5	aatttcagatgttcaaacatgtattttttctttaatcaaggctatctagctgcatctactctattcaatatatatttgcacattcttaagatatcttcaa<br>ttaagcttataaaaatatgaatttacatatgcagcatgatttacttttcaggattgatcttttaaaatttgtacaaatttaatatcttataaatattgca<br>attttttcgaacactgccaaaatataattgatatcatgaaatattcatttaaattactcaaatatgtcaacaggcaaaaatacatttagtaaccactaca<br>tgtatagagaataaaaattccagtttggatgtgatgttatatgtcagtatgtaaacccatgctttaaatagaccattttgttcttt<font color="green"><u>AAAAAAATTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAAATTATCTG</u></font>tagttttctctgtggaaccgataatattagagataatttctcataacaggaaaaaggggaggaagtaaaaaggaagaaaagaagga<br>cggaagaaattaaggaaaacaaaagggaaaaaagagataacaaaagaaagaaaaaacacaagtatcctacacaagtatacagctcattgtactctagtga<br>gatgaatgaattatagatacaataacataataataatttttggtgtttatttgaaaagcaaatgctgcctttctctatatcagcttatgttggatatctt<br>attatcctaatcaaaagtcagtataacagaagagtagaaaggactactgaaatgtgactgagataaaaattatttaaatgtaaataaataataattaggg<br>	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	437	123	NA	intergenic
0	chr21	16444095	16444411	1000116	0	-	Ya5ac2731; RIP_Alu_chr21_016_01	ACCTCACTCAGAACTCAACGAAG	ATGATACCCTTTTCTCAGCACAC	SINE	Alu	Ya5	gggatagcattgggagatatacctaatgctaaatgactagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattg<br>tgcacatgtaccctaaaacttaaagtataaaaaaaaaaaaagattcccagcaaattttgtgaagtctggttttaaatccaggtttatttaactggcccgc<br>taagtgccagatactctgctaggcacaaccacatgctaacttacttactgaagaatgaaaacaaattctgtcttctcagatttcacacctcactcagaac<br>tcaacgaagaccacaacaaagcgctcgagagaagcgatttaccagggtgtctgggggtgctgttatcatcgctgccacactaacaaat<font color="green"><u>AAGAAGCATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAGCATTTC</u></font>caggggaagacagatccaacacgagacaggtgtgctgagaaaagggtatcatagtcttgattttgtccttt<br>cgcaaagggtaaatgtaaacaggaaataccagaacacctaaatgtaaacaagtacttgaggaattctaaagttgttctaagaactatggaaaaatatttt<br>taaaaacattcatattattaaaaatatggaatattgttatggttgttatagccagaatgtatcatggctccacttttataaatactattaaaaagtggta<br>tttatatcatactccttataaaatttcaaacgtcacatttactgcagtgttttgtcattctttgtagcacaatttaaaatgcactccaaaatggacatgt<br>gatttttctcttccaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	429	103	NA	intron:C21orf34:NM:001005732:2/8
0	chr22	16479533	16479826	1000117	0	+	Ya5NBC109; 52565; RIP_Alu_chr22_016_01	GTGCCTGGTACTCTAGAAATAAAACTCTCT	AGAATGAAACTCCGGCTCAAA	SINE	Alu	Ya5	aaatatttgagacagaaatgcatttactgaggccaggcgtggtggctcacgccagtaatcctagcactttgggaggccaaggcaggtggactgcctgagt<br>tcaggagttcaagaccagcctgggcaacacagtaaaaccccatctctactaaaatacaaaaaattagctgggcgtgatggcatgcgcctgtagtcccagc<br>tacttgggaggctgaggcaggagaatcgcttgaactcgggaggcggaggttgtggtgagctgagatcgcgccactgcactccagtctgggcaacaagaat<br>gaaactccggctcaaaaaaaaaaaaaaaaaagaaatgcatttcctgaaataatagctgaaataggacttctgtatttgatccag<font color="green"><u>AAAGAGTCATACAAGA<br></u></font><font color="red">GGCCAGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAGAG<br>TCATACAAGA</u></font>aactatcaccatcaaaacaatattaagcaatatcctatcagctgttatgtattagtgagagggaaaatagtcttttcttcttcaaatgat<br>aaactagtcaaatagcccaaggtttcagagagttttatttctagagtaccaggcacataaaaatttaaggctgtactaaaaggacaatgaaaatattaaa<br>caatatatcttggtcatattttatttactgatttttttcttgagacagagtcttactctgtcacccaggctagatggagtgcagtggtgcgatctcagct<br>cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactgcaggcgtgcaccaccacacccaaccaa	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	561	251	NA	intron:ATP6V1E1:NM:001696:2/9
0	chr22	16264244	16264561	1000118	0	-	Ya5NBC221; RIP_Alu_chr22_016_02	CAGTTTTCCATATACATGTGGGTTC	TAGTGTTAAGAGGCCCATTTTCTAC	SINE	Alu	Ya5	atctgacaaaagatgggagatacctaaagagttgagaatttgaatataaaacttttctgtcagaaatcaaagaaaacctagagagagagaggtaccatca<br>tcatgggtcagaagactcaatagtgttaagaggcccattttctacaaattgacctagatattcaatacaactccaatctaaatgctagcaggcttttttt<br>gtagaaactgataagctaattctaaaattcatatggaaatataaaaaatataaaatagccaaagcaactttgaaaatgaacaaagtgagaggactaacat<br>tatttgatttcactacttattaaaagctgcactaattaagatactgtgatattgtcttgaaaacagaacagagtgaacaatgacata<font color="green"><u>GAACAGGGTCCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAACAGGGTCCAG</u></font>aaatgaacccacatgtatatggaaaactgacttgggcaactaataaaggatagtctttttttttttttt<br>tttggcgggggggtcggggggatggggacagagtctcgcactgtcatccaggccggagtgcagtggcacgatctcggctcactgcaacctccacctcatg<br>ggttcaagagattcttctgcctcggcctcccaagtagctgggagtacagacgtgcaacatgacgcccggctaatttttgttatttttagcagagacgggg<br>tttccccacattggctggactagtctcaaactcctgacctcgtgatcctcctgactcaagtgctaggattgcaggtgtgagccactgtgcccggccaggg<br>tggtcttatctacaaatg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	640	313	NA	intergenic
0	chr12	89370520	89370710	1000119	0	+	Ya5ac2215; 12732; RIP_Alu_chr12_089_01	TCACATTCTGCCAGTGTTCC	CAACAATTCCTTGGTCCCTT	SINE	Alu	Ya5	atgcatggcacttcatcttttaaagggcactttaataatttttctaaatcaatgcatgtaagagttaggtgttctcttcaagttcatcttaattttattg<br>aagaagaaacaggctcagatatgacagatgaattggcctggcttttcaaattttaagtaagttgacttttgattacagattcagaactcattcaattgga<br>caacatctgactcctagagacagacttcagaaactctgtagaaacccaaaccaaaactagcaagtgaaaatgtagcttctcttctttatgccttccatat<br>tctcacattctgccagtgttccactttttatattatacttatttgtttttgattcctggtttgcttcaattttaagataaagataat<font color="green"><u>AGTAATAAAAAAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAT</font><font color="green"><u>AGTAATAAA<br>AAAT</u></font>gtactatgagtatgaatcattaaatacaggattgaaaagccttatgtaaatatagttgctcttcaaataatctttaaatatttgtgaccatctact<br>gtcataaagggaccaaggaattgttgtaatataactgatttactgtgatttaagtgtgtaattgagtaacaaatgttctaaaatatgactgacagatttt<br>ttcagaataaactctgtgttgttcattttgttatagtcaattaaatttaaatgtattaaaagcggtttacctgatattaaactctaaactctatgttctg<br>gaaaatagacttcaaaaaacttcatatggtggtcaattacagatgttacaaataaactagactaatgggatacatttaaatgcaaaataca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	424	124	NA	intergenic
0	chr13	71854726	71855025	1000120	0	+	Ya5_552; RIP_Alu_chr13_071_01	TCAAAGTTCATTGGAACCAAAA	GCAGGCAACTTCAACAGCTT	SINE	Alu	Ya5	tgctgtgatttcaatctttgagaaaaactaaggctttcatgagctaatcatcttctgtatctttatattctggctaattagtaattataaattgcctatt<br>ttaaaacaggatctaggacacaatgaaaatttttaaaaagttaaatcaatctgggctgaatgcccagaaaaattaaaaatttagtttaacactcctggga<br>tctctatgtgtatgtgtatacgtctatgattgggtttattagacaaaactaattgaaaagaagatatctggaaattaaacctcaaataatattagtcaga<br>gataaggaagcatatttttaatcaaagttcattggaccaaaaaaagtctataaagtaacttaatccaaggttttttttttttttttaaaa<font color="green"><u>AAAAGGGTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAGGGTTT</u></font>aaaaaaaaaaacttaagctgttgaagttgcctgcatttaaaattaatacctaggggtagaaaacctactccttaaacctgatactaagaa<br>atatgcttattaatggagtcaggggtagaaaaaggtttaaggaggagaaaataaaagtgaaaataaagagacaagcaaggggtatagcagatggagatag<br>acattcaaagctggagagagaaagagtaggaaagattaaagcatttagaacatattccaaggaatattcttaggctatgggcatcacagtgggctgtctc<br>cctgccctttgggtaattgactagccactattctcagctgcttaagtgtataagcttcttaagaggccatttttgttttattcatagtgcctactatagt<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	423	131	NA	intergenic
0	chr13	68864669	68864962	1000121	0	-	Ya5ac2312; RIP_Alu_chr13_068_01	GGCTGGATAGATAACAGGCAA	GGCTTACCACACAAGCCATT	SINE	Alu	Ya5	aattacagttaaactttcttttgagatggagtctcgctctgtcgcctaggatagagtgcagtggtgcagtctcgcctcactgccagctctgcctcccggg<br>tccacgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccgccaccacgcccggctaatttttcgtgtttttagtagagatgggttt<br>caccatgcaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccaaa<br>attacagttaaacttctataatggctggatagataacaggcaatttacgttagatggtcagtgaaactctacgaaggaaagtcatatttgaaatt<font color="green"><u>AAGTT<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTT</u></font>t<br>caagaatacaaaaaaagagcaattcataagaagattccagagaagaaatttctagcagtcaacagtgcaaaggcactgagtctagaaatggcttgtgtgg<br>taagccattacaatgggggtactaaagtggagaggggtgttttcaggtgagaacacttaagtaagcagtaactgaaagctgtatatcttctgcaccatta<br>ttttcagaagtctgtatttggtcaaaaatagttaacattttctgtattgcataaaacctaaccctatattttgatgaatttaaaaaatgtttctgcatat<br>ttaagactaaattttatttacttcatcaaaaattagtcatttgtatatcatatgcttatggaatgataaccaagtaaatgaatataactgctcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	189	NA	intergenic
0	chr13	87801285	87801607	1000122	0	-	Ya5ac2336; pAlu13-87839827; 238759; RIP_Alu_chr13_087_01	GTATCACATGAGGTGCCTTGATT	GTCCTTTCCCTAATTCTAATGTCTG	SINE	Alu	Ya5	gttattgctttcctgaagcttttccaaaatccatcatttccagacaaaactagttattagcaaaacctgaggtgttaaacatgatattcacaactttaaa<br>ttaatatagaataaaatactatggatatagttcataagctaagaaattattatatgaaaatatttctgtatgtgtaaagttgaagtgtgtatcacatgag<br>gtgccttgattaatatgttggtaagatttttaagaaatttgtattgctttttatttaaaataaaattattactgtatttaaaataaaataaaatttcttc<br>agcattagtagccattagacatcttttagctcaagagtcagactctcattcattcagtacagagtagaattggtaaatgatactctc<font color="green"><u>AGAAAAATACTAG<br></u></font><font color="red">ATTTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA<br>AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATACTAG</u></font>atttagatatcagacattagaattagggaaaggactgttacagtactatggtgaaaaaatgtaa<br>cagaggagaaaaaatgaaaatcatttctccctttagaatataaaattttaggatgtaatcccttttttagataagaaaaacacaacttagtcatatgttt<br>tcctatgggaagagacaagctctcacaaagacatagaaaattttctccgccgaaatgaaaaaaaaaggaatatcttgccaattttttctttttctttttt<br>cttcttgattaagcctttttatatcacaggggagagaaaattgattagaagtatttaaatgtttcatttggatgacattattttttagtttcctacttga<br>tacaagatttattcaaagattga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	585	250	NA	intergenic
0	chr22	14733465	14733466	1000123	0	-	Ya5533; RIP_Alu_chr22_014_01	TGTCATTTTGCCGAGAGATG	TTCCTTCCTACCAATAACCAGA	SINE	Alu	Ya5	atttttctgaagtcatacccccccacacacacaccttcagtgatgtaagattacttatggtgcaaataatttggcagataacccaggtgacatgacgact<br>ttataaaagagatactgctatcatagatgtaaaagccagaaggaacaagcaacgtggatactgatcctccatcatggcctttagttatgctatcagattg<br>gaaacagaatcaaattcttagctcaagtacagcagagttttagaaaaagggaggcttgccacaggcacaaagcttagggaaatttgaggagagacacaga<br>gaaaaacaaacatgtaaactgctctctttttatgtcttccttcctaccaataaccagatatctactccatttctgtacttcattcaacaaatta<font color="green"><u>AGATTT<br></u></font><font color="red">ACCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA<br>AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA<br>GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGATTT</u></font>acaagaccgtacattgc<br>tcttttgagaactcacctaaatttcatctctcggcaaaatgacaggtcatctctccttgccatcgttacttcaaccaactgacacagtttcgtttttatt<br>tgcattgcatggaccatattcccaagcacacaaacgtacctatacagacatagagacaataaaaaaattatcagatacagacacaagataaggcattcaa<br>aatactttaaccatcaaataaaatgaactaaacgtaagtttgaaaacagtaagacatttatttataggagagcatacacaatttctggttaccttgttgt<br>cacagcctagtttgtgtgcagtaaagaatggcaaattattttatcaattactatcaatatcaatgtgtgacaggttt	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	408	125	NA	intergenic
0	chr14	58964124	58964125	1000124	0	+	Ya5ac2408; RIP_Alu_chr14_058_02	TGCGCTTTAACACCAGTCAG	AATTATTTGGGGATGGGCTC	SINE	Alu	Ya5	tattgctgtacgtgtgacctcgggaaagttatttagccatgccaccctcaatccctgcatatgtaaaccagggcttataataataccttctgataggtgg<br>ttatgaagattaaatgagagatatgcaaaagcccaattccagtttttgatcattcttttcaaagtgtctcacataattctctggctactggtacatgtag<br>attattaaaaccagggcacaaattgatagtgcactgctttatcacaacactgctgttctgctaaaaccctcagccacatttatctcagaagggccaggac<br>cagatggacactatcattgacttgagtctataattatttggggatgggctcaagtcttgcatttttgttttttaagatactag<font color="green"><u>GGTCTTCCACTCTCTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GGTCTTCCACTCTCTTT</u></font>aggaaaaagagcgaatgctttgccagccctattatcctctgactggtgttaaagcgcatttagtgggaatgtc<br>attaactttttcatgggaaagatgaaattggccagcaccctgtttctcccttccagttttgctgtgctcctggctgtgcctagagagggaaatccaatga<br>agcgtgaggtcaggcagcccaagctcttccccagggtgcactcagccagcaggcctcggtcctaccttgaggcaaacactccttctaaatgtttatttat<br>gcttttgaacccaaggtccaatgggaacatgaaacatatgattccaaaagagattaccccccacggatttcttctaccacacacagagaaaaggaaaacc<br>atgtataagc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	352	127	NA	intergenic
0	chr14	86927818	86928136	1000125	0	+	Ya5ac2409; RIP_Alu_chr14_086_02	CTGGATCTTGGTTTCCCCTT	GGTTTAGGATTTGCATTGCTG	SINE	Alu	Ya5	aaggatttccgtttaacttcactttcctcagtccatttcatacatcttgaaacttattattcaactattatgttatttcccaatttgtctatttgctaca<br>tttcaatggccttgtctagatctcatagtccctttcactcattgcttccgttgttatatctacataggatattttgtatagattcataaaaatgttaaaa<br>tatatgtatactcactcaatacttactcaattagccctaattgccagacacttaatagaatttggtgggatcacttctggctttcataaaaacttgggca<br>cttttcaactactccctctggatcttggtttcccctttgtaaaagatgaaaaaaatgaaaaggaaaagatatcgcacaatagttatatttat<font color="green"><u>AAAATCGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>AATAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATCGT</u></font>aaagctgattgtaaaagtgacagaagaaaatatcacagcattgattctacaaagactcctttgattaacagca<br>atgcaaatcctaaaccagtcttgtaaatgtactgaaaaaaagtcattaaatttcagtaatattcactctctccctggtcttaaacactgttagtagaatt<br>atagattggttaactcttttagaagctaatttggcagtatatatcaaaattacaactgtgttttgcttatgacctagtaattctactttacaggtaccca<br>aagatgtatatataaaagtgttctttgtatcatttattgaattagaaaaaggtaatggacaatacatattcactggtaaacaagtgaaaacattttattg<br>aatatgttggaggtatgaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	172	NA	intergenic
0	chr15	66976380	66976381	1000126	0	-	Ya5ac2465; RIP_Alu_chr15_066_01	TGATGGAGTTTAAAAAGTGTCAGC	AGCTGCCCTAAGTCACCAGA	SINE	Alu	Ya5	aaaacctcctgaacaacatgttctcattaactgttatcatcctcatgacagctttcttttactagagacttgtgctgtgcttactgaatcctcacctctc<br>ccctgtcaggcgggtattcttattgtacaggtaaatgaggaaagagccagactctgctccctagaaatagccacaaactcagccaatgtgtaaccagcac<br>cctgtcaggtcagagtgctttgtccacagaagtgctcagggccaagtggaagcagacagagcttctcagctgccctaagtcaccagatacttccattgct<br>tgcaactcctgatattttagacattatagaaatgataaaatagggttacaaaaatcattatgtatttgagatgcttacatttaata<font color="green"><u>AGCTGACACTTTTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AGCTGACACTTTTT</u></font>aaactccatcaaaatatataattcatcatcattatggaattcacaggatatttacaggatttataaaaaataaagt<br>gagatcagtgattcatcactacttttataaatcctgtaaatatcctgtgaataccataatgatggtattctacctaccagcagtgccttccactaatggg<br>atccaacgctgaagctgtaagttgcacatctctttcttctgtccttgttggtttatctctgtgatcacagatagaacctctttgggatggatgtaaggtc<br>caaattctaaatttaagggcctctgtgaatttgaagcccaggacacaataggccctgaatggaaggaaatattgaaggccacccttttaagcccatcagt<br>aagctcataa	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	463	145	NA	intergenic
0	chr16	32960442	32960738	1000127	0	+	Ya5ac2487; RIP_Alu_chr16_032_01	TTTCAAATGCCTAGTGCAATTACT	TGCACACACGCTCACTGATA	SINE	Alu	Ya5	atactgcaggcaataagaacacagtggtaagagtttatgtatgtaaacatacttaaacatagaaaagtatgtaaaaatatgtattctcatgggaccaatt<br>ttgtatatgtaatccatctctgacagaaatattatgcatgacttgactctatgaaaaaataatacatttttaaaaatggacacatgtatcaaacatatta<br>ttataaaaataaaaatatttattcagtgtaagaatttgtaatgatcacagcttatatttaagtacagtttcaaatgcctagtgcaattactatttatttc<br>tttgtgtattttaaacatgtatataataaatatttttcaggttcaacaatatatatcaatcctacaggctcttataaatattagtt<font color="green"><u>AAAATCAATTGGTA<br></u></font><font color="red">GGCAGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAAACCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>TCAATTGGTA</u></font>aattcatgtatatatatgcatacctgtatcagtgagcgtgtgtgcatgtatgtttgtgtaaatgtaattgtatgtgtgtgtaaatgtaat<br>tggatgcatccttatatttacccttacctacaagatttccaagattcatttatgatctttagattatgggcatttaaagatttaccaaatacaactgtaa<br>tagtggaaaatatcaagatgttattaaattcaacttgtgcacataattgtttctataaatttatgtttcttgcaaaactggcagtaatgctcatgcacaa<br>aataattttctaaataaaaaataaaaacgttttctcagtcattaattcttaaaattatttctccccaataattaatgtgaattaattcttaattct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	490	179	NA	intergenic
0	chr18	25883689	25884004	1000128	0	+	238589; Ya5ac2585; RIP_Alu_chr18_025_01	TCTTGCAACCTACATACGCC	TGTGCTCACTCTCCTGACCA	SINE	Alu	Ya5	gtagcttaattgtagccagtatagagattgaaaaattgtctagtaatagataacaaatacatagtaattattattcatcaggcactcttttaattgcttt<br>acacatatcacttttttcaatctttgccaactgatgaaaaaggtgttattattattcacattttattggtgataaaactcacaaagttagtgtgacttac<br>ctaagcgtcacacagatagtttattaaataatgaacatttgagaaccggcagtccatactcttaacactctgtcactacaccctctaagaaaagtagtct<br>tggtcaccatatacactcttgcaacctacatacgcctatgttatgccagattggagacaattttgttcagtatatgaaaataagaatatc<font color="green"><u>AAAAGTGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGTGAGA</u></font>aaactatgccaatattacaccaacagagccataaacttgggggcaagatcagaaaacatggtcaggagagtgag<br>cacaggcgttgtgtggcaaaagaagtcagccctacctgagcccacaccaggatatcccctactattcaaatcctcacaggagtccggttttgcctttatg<br>acactgtgcttgattgtaattgttcgtaaaaatatgtgcataataatgtctaatcatttgctaaattgtattttcaggtagaatactatgcctgacacat<br>tagaagtattcaataagtactttcaaaggattccaagttgaatactcaggaaaagggaaactaaacagaaaaaaaaaattataagcaattcctaaaactt<br>tgcaaaagacaaatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	488	161	NA	intergenic
0	chr18	49179991	49180298	1000129	0	+	Ya5NBC244; Ya5ac2596; RIP_Alu_chr18_049_01	TGCAAGTAACAAATGCCCAA	ACAAGCACTGCCCTCTGATT	SINE	Alu	Ya5	ggtttatcccttcaaggtgctaccatagtaattatttgactccaccttttttatttccttgtatgtagattcagtgtcacaaaagagagaatattattgg<br>catcttttgagacaggtgatcacacagctaaggagaagatgggataagaccatggaattcccaactgatattgctaccaagctttcatgatatagaggag<br>agcttgttttccaaagagaaaaaacaagtcctcctttaaaaggaagaggagaggatgggatgctggacagtgcaagtaacaaatgcccaatacaattcct<br>atggctgaaatcttctgaaacttaaatgttaccttccattcatgtacttaataaagaaatggaagtataggaaaaaatgagagcc<font color="green"><u>AAAGAAATCAGAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAGAAATCAGAGGG</u></font>cagtgcttgtctagtggaccaagatattaattaagggtttttaataatgttaatttataattgtcatgccttgagat<br>acgaacttggtaaggagaatatagtctatgtctttgagcgaattgtggtccaataaaaaagaaaaagcatttttttaaattcctgaagtaatatcagaaa<br>tataatcataaaattgtggacaagttaaaatcagagcaaacaaagtacagattctgtctggaaaaataagaggaagtttcacaaaataaatgaggtttga<br>gctatggcttagttgaattatcacatactaattccagggacttccaaagaatggaaaactcatgtgcaaaaatacccaagcaggtgtcagaaagatgatg<br>tgttaaag	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	453	130	NA	intron:DCC:NM:005215:18/29
0	chr18	44250159	44250458	1000130	0	+	pAlu18-45884052; 79823; Ya5ac2608; RIP_Alu_chr18_044_01	TCGTCTCTACCTCCAAGGAAA	TTTTGGCTGAAGTCCACAGA	SINE	Alu	Ya5	gaaagaaagagagaaagacaagaaaagaaaagaaaaggaaagaaaggaaggaaagaaagagatgtattattccaatcaatattcctgggggagagttacc<br>accacaaaaagataatacttaggcaaattaaccctaaattggaagtatcacaacatattttgatccaagaaccccagatgtactatgttaaatactcctt<br>ctttcctgctgtgtctcgtttgtatgctggaccagatagagaacaggaatgtgtaacactattttcattccattccaacaacaaaaaatatcaagcattt<br>cctactgctctgacactaaataattacaaaagacacaaccatgtacagagatgtcgtctctacctccaaggaaaacacaatct<font color="green"><u>AGAAAATAGGTATCATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAATAGGTATCATG</u></font>ggtctaaaaggaaaccaaaactgaaatgaaccaatctttaaaaataaagcaacataagagccttatctaccaaaatctgtgga<br>cttcagccaaaacggaatttaaagataaattcatagccttaaaatctatatattagggccttagaaagaaaatcaactaagaatccaactcaagggcaat<br>gtggtcatggtggcagtaggtttcccaatctccctataacctctcctgacaaccaagtagagcagataggatgcagccccccaaaaacccaccacctcag<br>ccaacaacaacaaaaatcccacctctaacctctaacctcttcaaccaaattaggtgacaggagacctatcaaacctgaggacatggacaaatacgccaaa<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	459	142	NA	intergenic
0	chr18	53822135	53822426	1000131	0	-	Ya5ac2617; RIP_Alu_chr18_053_01	TGACAAGCACAGGACTGACC	ATTGGCTGATTCCAAAGCAC	SINE	Alu	Ya5	caatagacttatatttaacatactttgcttctgcccttttctttcatttgatgtttgtgggaaatatttgtggtgagctagaattaaaagtctatacttt<br>ttcattggagcacttggtcagagcagagtgctcataagatttagatcaaatgtgtttgatccctaccagcccagaacctggaacaggctactatcccagg<br>agagctaatcatggccacataggatagtggacaagagtcagggggacctcaggagccaggagactccagacagtcagcttaaatgtcttgctttagaact<br>ttcatgtggcagcaaccttttattcaatgtctattcatttgtccctgattagtgacaagcacaggactgacccattgtagctgttt<font color="green"><u>AATAATAATGTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AATAATAA<br>TGTTTG</u></font>tgcatttaaagacgctgtgctttggaatcagccaattttgcagggcggaggaagaaaggaaactggtttgccatctggcatttacaaaatggga<br>aacaaatgcattgactttttcttcctctcaaaacttcacaaaaatggcaataaagagactgttttctgaagacataaacccataaggatgaagagcattg<br>aagagaagataacagataacaatagaagataaaaatttccaaattttgaaaattggagaaatgcttataaagcggcttagcagagccaaaaaaactgaat<br>tcactcttgaacctgggaggtggaggttgcagtgagccaagatcgtgccactgccctccagcctgggcaacagagaaagactgtctcaaaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	390	84	NA	intergenic
0	chr20	30362897	30363195	1000132	0	+	Ya5542; 238005; RIP_Alu_chr20_030_01	TTTGGATTTCCAACAGCTCA	GGGGGTACGTGGGTGTTACT	SINE	Alu	Ya5	aaaaactggagattgagaagcgggccattgtagaggatcacagcttggttgcagaggagaagatgaggctgctgaaggagaaagagaaaaagatggagga<br>cctgcggcgggagaaggatgctgccgagatgctgggcgccaagatcaaggtaccatacccgtacccttccttaggcccttgccctgtcactgcttttgct<br>ttcatcaaacaacaacaaaaaacataaccatatgagggatgatgtctctcatcagttttggatttccaacagctcatgatatccagtactcagtaaacct<br>ctgtttaattgacatgaatatgattttttcacatttacaaaaatgaaaattgaattcataatgagaataattattatgtatgcacatagtataa<font color="green"><u>AGAACA<br></u></font><font color="red">GCAACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT<br>ACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGC<br>GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAACA</u></font>gcaataaaagtaacacccacgtacccccccacccagtgtaagaaatagaacaacatccatttttctttttttttttttttttgagatggagtttc<br>actctcgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaacgtctgccatccgggttcaagtgattctcttgtctcagcctccagagta<br>cctgggattacaggtgcctgccaccacgcccggctaagttttgtatttttagtagagatggggtttcactatgttggcctggctggtctcgaactcctga<br>cctcaggtaatctgcctgtctcagcctccccaagtgctgggattacagacgtgagccaccgtgtccggcttttttttttctttctttcttttttttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	477	185	NA	intron:KIF3B:NM:004798:2/9
0	chr20	6098954	6099279	1000133	0	+	Ya5_550; RIP_Alu_chr20_006_01	GCAGACATTTGCAGAGAATCC	CACCAGGGTTCCACAAAGAT	SINE	Alu	Ya5	gatgttattgtatgtggtccgggcgtgggatttgggatgctggacaaatggttattatgacttacttccaaaggccctctttgcttatttgcttcaccag<br>ctttgaatttcttggcaaatcctaatggaaactcacctatgtaatgggcttgaatttgactacacaaactcagatgtgcaagacatgcatgtcatgttat<br>ttttcaagaataaatttaaatctgtatctgagtcctaatctttctgagctgctgggatagtacatctcattcattgttggagtttcctgtctgcccccat<br>cccaagtcaggtataagcctcagagcagacatttgcagagaatcccatggtatccattaacaagctcatggtttaagtgcacattatcttttaa<font color="green"><u>GAGTGG<br></u></font><font color="red">ACATCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA<br>AAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAGTGG</u></font>acatcctttctgtggaaatgagaatctttgtggaaccctggtgctttggtccagttgtactgggggca<br>tcaagtagtcacttctcctgagatcctgcctctagcttgaggtgtggcaaagaaacaccaactaatttctcattccaaagcttggacaacctcactcctt<br>ttctctctgcttctgctatactgtatcaaaggcacctgtttctcccccatttctccagtaacctcaggcttttaaaaacagagggcaaacagggagatgt<br>tcttatatacctttttgtgttgcgtccagaaaatacatcctatctgattcttctataaagaaaacacagtatctaaatacgttttcctagcacagttatt<br>tctatgtttagttcctcttacaggat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	451	119	NA	intergenic
0	chr20	44560939	44561246	1000134	0	+	Ya55632; RIP_Alu_chr20_044_01	AACAAGGGGAAATCTGGACA	CAGGCCTCTTCCCTAGCTTC	SINE	Alu	Ya5	tttacatgactgcatccctggtcaacatcttgacagcaacctcaaagaccttgagcctgaaccacctagccaagttactctacaattcctaaaccacaaa<br>aacaatgagatagtaaatgtttactgttttaagttgctaattttggggataatttgttacacaacaataaataatacattaacctgttatggggttgaat<br>tgtctccccaaaatgtgtgttgaattcctatacccaagtacctcagaatgtgaccttatttggaaataggattgttgcagatgtaattatttaagatgca<br>gtcatactggaggagggcaggcccttaatccaatgactggtatccttataacaaggggaaatctggacacaaacatgcacactt<font color="green"><u>AGAATGCCATGTGAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAATGCCATGTGAAG</u></font>ttatgctgccacaagctacagaattatcagaagctagggaagaggcctggaacagatccttcagaagagagtatag<br>ccctgccaacaccccaacctgacttctggtctccagaactatgagatgtatctgttgttctagaacatccagtttgaggtactgtgttacggcagcccta<br>ggagatgaatacaccctctatatcatgtctttgttctttggctacttttaagataatctttattaaactagttttgatttctttatgtcttgaaatttgg<br>tgtcttattgtgctcttcatttttatcctgcttggggttcattaaacttcttggacttgtgaatttacattttccgtaagatttgaaaaaattgttccaa<br>cattaaga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	424	75	NA	intergenic
0	chr21	46212101	46212400	1000135	0	+	Ya5NBC24; RIP_Alu_chr21_046_01	AAAATTGAGAGACGAGGAGAAGGT	CCTCATCAATACTGTAACTGTCACAAC	SINE	Alu	Ya5	gtttccccggcacacacacctcacaccatacacaagaatacaccccagtggatttgggatctgaatgtaaaaaatgaaacaagtactagaggaaatacag<br>gtgaattcctccataccctgaatatgaggaaagatttttctaggaatcaaaacaaaagattaatttgactacatgaaaataatagcattctgcatggccc<br>aaaacaccacaaaggcaaaggaaaattgagagacgaggagaaggtgtgtgctgcacaatcacagatgcatagctaatattccatatattaaaaaattcaa<br>tatttgagggggaaaacatcaaaaactcaacagaaaaatgggcaaaagacatgaaacatgaatagatcatttctccaaaaatgtataaaaat<font color="green"><u>GATCTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GATCTTTA</u></font>attatatgaaaagttgttcaacttcatttggaataagaaataaaaattaaaactacagtgagaggtcctctccaatctcgtgttgtgacagt<br>tacagtattgatgaggccgtggcctctcactggctgacgactccaagctgcacagccgtgcggaaggcagttcaatccgataaaactccgtgacccagca<br>actccacgttacgaattcacaccgaagaaaacctccaacgataggaagacttgtaggcacaaggtcatttgatgcagtataattggtggttgtgaaatac<br>cggaaaaaattaaatgctcctgtgtagacgtgtgttggctaagctaaggtactgccacatagtgccttcatgcagctgcacagagaatgaggatggtctc<br>	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	595	286	NA	intergenic
0	chr21	13502317	13502621	1000136	0	-	Ya5448; RIP_Alu_chr21_013_01	AAGAGTGCACTGTGGTTGAAAA	GGACAGCCTGACTTAATCTCAA	SINE	Alu	Ya5	gagtagaagcttcaaagtacagatgtgctgaggaacaaatgcatgcttgttacttttaaatcacttgtatatattctaatgttctttgtcctcttggagt<br>ctccaactcagattaatattttattacagcagttactgtttttaaaatggacagcctgacttaatctcaatttgttaacagtgatttaaatgaaatatct<br>ttgaataattaatattaagtattcatggtatataaaagactagttagctaggttaactttgcttcataaaaatgaagtgattgaagtcaatgtacatgat<br>gagctatatttcttgaatgcctttatacttgtatttgttgatttgttggaaagaaacctgaacatttattaaggtttcactatatggct<font color="green"><u>AAAGAATTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCTCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAGAATTGTA</u></font>tacttttcaaccacagtgcactcttttttttgttattaaataagaagccttaatttaaataaaaatggagatttgcttgttagat<br>gattgtttttaagaataattgtgttttgtttctacatgcagaagctaattttaaatacttattgaattaaaaagaaaaaagtatgcaaaattataaaaat<br>tttggccagtatttttactgcttaaatagtgtaaatcatttttaaaagtcattaatttacctattaggaataatcaatggatgttacacagcatctttct<br>gtctctattaagaaagattttagcctggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcagaagattg<br>agac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	592	277	NA	intergenic
0	chr1	58832215	58832529	1000137	0	-	Ya5ACA618; pAlu1-58417239; Ya5NBC347; RIP_Alu_chr1_058_01	GCTACCCTCCTATGAGTGACAGA	CATGCCCATTGCTTTACGTT	SINE	Alu	Ya5	tgactgtcaacaaatggggctgttctgtttattaattgctgagcagcaaacaacaaaactggcttgaacatactaacattttactatatctcaccattta<br>tgggtcataaattcaggcagggcttagcctggagacacttaggcttcatagagctttgactggggctactcagtggtattcaggtggcatctggtctggt<br>ctgaggatcctggatgtcatcactcacatgcctggcaccccgctggggacagcgggagactgggctgggctcagctggacccctccccctctccatgtgg<br>tctctccagtggggtagatggactcatcccatggtgcctcagtttgctaccctcctatgagtgacagagaaattgtgaaatgaaagataa<font color="green"><u>TTCAAATGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAGATAA</font><font color="green"><u>TTCAAATGAT</u></font>ttgaaatgtcatcttcagtacacataattaacgtaaagcaatgggcatgcaatttttaataacaagtcatttgtt<br>tctctctatgcccaccaaatagatgtgtccatgatttttttaagtatcagtttgaagaggtgctactctgccatcctgtccaaggtgccactgtcactac<br>tcaccctgtgggagtgagttatggggctctcttcctttctcaatagcccacttggtctagagcaccaacctgtctctctcatggtctcccagcaacctcc<br>aatctgatcttgctgcttccagtctcacctcctgccactcatcctccatatagttttcctgcgatttttctgaaacacaaatctgctcagactattccct<br>tgcctaaattcaatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	447	104	NA	intergenic
0	chr1	229369701	229369990	1000138	0	-	Ya5ACA593; RIP_Alu_chr1_227_01	CAGAGCCTTAAGACGTGAGAGTT	GGAAAGCTCAGAAAAGACAGGA	SINE	Alu	Ya5	gcactgcactccagtctgggcaacagagagagaccctgtctcaaaatattaaaaaaaaaaaagaattacaaatattaaaatatttttacctgtgatcaca<br>gtgcaactatgactccatgttctttgtcacgtatgtattatcccttttaatagaagaggtgtttcctctgagcctttaaagcctaacataccctttttac<br>aaaataaggtaagacagcaggctgagaagccacctgccctttggcagagccttaagacgtgagagttggctgggtgcagtggcccacacctgtaactcta<br>gcactttgggaagccaaggcaggaagatcacttaaggccaggagttggagacaagcctgggcaatgtagtaagaccctatctctt<font color="green"><u>AAAAAAAAAAAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAAAAAAA<br>AAGAC</u></font>attagagtgatcaaaagtcctgtcttttctgagctttccaggccacaccctctcccttgcttttgtgaggtgctgactcagtgggaatagtactc<br>ctggagtatcagtgagattttcttttaaggctcttcgatttaccatggctctcaaagaactccagaagaagagcttatctataaagaaaaaagaattatt<br>ctctaacctcaacttaggaatcaactcctacccagtttaattcagagctggccatctgcacccagcaggtcagagttctccctgagtgaggagttataga<br>tgttgacattctgtggcatgtcacactaggaaagagctatggtacacagtaacccttttctccagcttcaggaaaaacagattttcataa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	195	NA	intron:TRIM67:NM:001004342:1/10
0	chr1	116272643	116272945	1000139	0	-	Ya5ACA636; RIP_Alu_chr1_116_01	ACTTAAAGTGTTCAGCGGGG	ATTTTCCACCAACCAGGACA	SINE	Alu	Ya5	tgtataattagcagtttcaagggatttacagtctaccaagaaaataaaacacgtgcccaataaggccgctttgaagaattatgtgataaaagcaatgaga<br>gttgtatatctcatgtgcttgctgcacatgactttgagcaatcttgtgaaaacattctgcctcaatctctttcttaatatagcagagtcctagtgagata<br>acatcagagaacagaagatgattggtgatttattacttttcagtttttacaagtttaaagtggcttatatgacaaatatcgaagaatggtcccacctttc<br>ccagagtagggagagaccttactttagtctgtggatatgtttacttgctgactgtcaatgagaatgagacaatgacattcactt<font color="green"><u>AAAGTGTTCAGCGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAGTGTTCAGCGGGG</u></font>agctctggactatatttttctttttctgttatgattcttgcttgtctgaagccttatttcttttggtcaatacctgtgcta<br>aatgtcctggttggtggaaaatactgttaggttcagattcattgaaattcatggcaaaaatgaaagaaagtccttaatcaaaggcacaagatagattttg<br>caaagaaattacagccagaaaattaatccaaaatgtgctttggtttgggcttctgtacaagcacgtcttggcggcaggtctggactcgaggttgtgggag<br>ctgcaggagtggaaaatggaaatggctcatctgcacctgccctttctccagagatttggctcatcatcctctcccatgacacacagggccagtccacact<br>cag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	442	139	NA	intergenic
0	chr1	79886774	79887077	1000140	0	-	Ya5ACA647; RIP_Alu_chr1_079_01	ACGTAAGCCTCAAAAAGGCA	GGCACTGCAGATACAGTGTGA	SINE	Alu	Ya5	aagcaagtcttttgagacatctggaaatcaagtcagagcaaattaccataaattatttatatatttagctatgtaagaatgtatttcagtttttggaatc<br>actgtggtttatctatttaccaatagaaggcaatgaaaacaggcatgttttgtctgctatgtacatcatctagaattaaaacaaaagtcagttttactga<br>atagggccattcatgctgtatactgtacaactcctaaacatactattcatgtaggccacaatataaataaatggtcatcctctttcctgaatctgtacaa<br>ccatttttggtgattatgccagattcagcagaaaaattagatattttaagtcagtgtttctagaacgtaagcctcaaaaaggcaact<font color="green"><u>AAAATCCTTTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATCCTTTTAG</u></font>ttcacactgtatctgcagtgccgatactaatgcttaggttatagtaggtgctcaattaatatttagtgcattaataaatggta<br>aaactaatggcattgaaatcaatagtagtgattaatttaaaaaaatagaattctgacttccctcctgatttgctaagtcagcatatcaagatgggcatag<br>agattaaaagattattctaagcataacattttggaaccagcattgttgatttcacatctagctacaagactaaactggcatataaaattcaggatgtata<br>cagggaaagcaccaattctagtcttcaatgtaattctcaagtggtggttttctggtaagtttgtagacaataatacttaggagaaaatgtgtataaaaga<br>ctaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	375	58	NA	intergenic
0	chr1	86655036	86655340	1000141	0	-	Ya5ACA662; RIP_Alu_chr1_086_01	CCTGCTGCTTCTGTGTTTCA	TTGCCATTTTCACTGACTGC	SINE	Alu	Ya5	gtagtcaaatgacaaaaatgtagttcaagtttaagcttataaggctgtggttcttaatgcctcatccataaatgctccataaatggcagctgattctaca<br>gtaattattaattagtataattatcagtactgtcagctggagttctcttgctccccagagaagtaggtataattggcttttacctctgtcaatttcatgg<br>cccatggaagatcaagcccctcctaaatttctgcaactatgctgtatgcttgatttctcaaaactcctgcttcccagatccacacctgctgcttctgtgt<br>ttcactacattgtcttaaatgtagtatttggaatttctcaaagaaccatgtatatactgtgtttgcagcaatttagactttact<font color="green"><u>AAAGAGTTCTTAGGGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAGTTCTTAGGGA</u></font>aactggagaggtatttatatcacagaaaaaaataaaacttaagcagtcagtgaaaatggcaacattcttgtaagggaaa<br>tagctgcactttagtcaagagcaggccgaggtggccttctggtgcagcatgactcagtgggtttggagcacagggcacaaccctgcacattatgtaacca<br>cgtgacacgaggtgcattaggtgatcacccatgtgagctcgtgcttggcttggagccattattgtctgtaaaaggtataattaccttgctaacactgtat<br>atacagcttgctcgcatccagagagagagagtaaagccatgtcaaaactgtctatgattcctcaatgtttttccagctacctaccacttgcccaccgact<br>cccct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	176	NA	intergenic
0	chr1	209028652	209028960	1000142	0	-	Ya5ACA766; RIP_Alu_chr1_207_01	CCTAAACACTCCAACCAAGCA	CCTCCACCCTCTCTCAATCA	SINE	Alu	Ya5	gcaatgaagacagaatggcttatctgacaaagatctaaagcaacaacaaaaacaacaataactttctataaaccctcattattttagaggtttggagaag<br>ctaaatccttcacagagatgcttcccaagattcttgtaagctgagtatggagaggagggggtaccccactgcactgccatcactgtggtgcattgctcca<br>cattgctccagggacttgaagttgctaggtaaatattgctgccacttgccatataataatgttgtttgctcatgcttagcacagagggaggaggctatgt<br>gtcagtgtcaccctaaacactccaaccaagcattaatactcatacagctgttccatctgaagcaattaaactaagtccgcactttt<font color="green"><u>AGAAAGAAGCTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCCGTGTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AGAAAGAAGCTATA</u></font>atatgaataatctagaatttcagaaatgcaaaaccacttgtatcaggtagtgcacacattacctgattgagagagggt<br>ggaggcggagaccagttctctttcctaattctgtgtttgcttaagtaattttaaaaattggtttacagtccccgaagacactggcagctaggaaagttta<br>ttgatctttctaaaggaaattttcataactttatagtgtctagacagagggattggttgaatcataaattgtggtaaattaaggcagttgttatgataat<br>gatatgaagaagttttactggcatgcaaaatgtttcaaatataactttaagtgggataaaagcagaatatatagctatatatagagtaaccttaactaga<br>tcaaaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	172	NA	intron:KCNH1:NM:002238:9/11
0	chr2	215479770	215480071	1000143	0	+	Ya5ACA792; RIP_Alu_chr2_215_01	TTTGCTTGGAATCATTTCCC	ATCCCATTACCCTTTCCCAG	SINE	Alu	Ya5	ctttattttaccagccatgaagcataaagaatattataagtagttctctatttgttttttagtgaaaaaatttagcagtctcccatgtattcatataatt<br>aagttcagatttttttccattatgtcctttatgtaatcagatgatgatttcttagacatttgaccaagttttatctttcttttaattccgaaacatttca<br>gatccataaaaactgatgaaaataaattagattttacagtatactaaatgatggactatttaagaattacttaaactaatttttggaaaacaaattcttt<br>acattaaaaatatatttaaaaactaaaatagctgaactatttagattttataacttaccaaaaaaaacaaagtagaagagaaaagagtatt<font color="green"><u>AAACCTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAACCTTTT</u></font>aaaggaaatctttctttactgggaaacctacttaagaaggacagatgacactgggaaagggtaatgggatcttctgtaatgctgatgac<br>agcaatgaggtggtgatggggatagggatggaaatcccccatatggttaggaagctaagatgtgaaccaactgattttgaattaaaaattagaaccatct<br>tctgtaagacttaaacacaggaaaatcacaccaactcagcgtccttaattgcttttagtatctctgttctagttcatggtctttctttcactttcctgta<br>ttttcaatcttatggtcaggacaggtgcatgctgttttaattagcatattcacacctggaatgcaacaacttagaaattacctgcagtcacaaagaatgt<br>ct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	913	602	NA	intergenic
0	chr2	218254404	218254701	1000144	0	+	Ya5ACA804; RIP_Alu_chr2_218_01	GACCGTGCTTAAGACCCAAA	CATTTCTCTGGGAGTTTGCC	SINE	Alu	Ya5	aacaaaaatctccaggtattctatgatcagccaagtttagagaccactaacttctggcacaaactgaagaggggaggggtgggaagattcctaaaactgt<br>cctagaaatgctattatcatacaaatagaattggttaattagatacaagtattgtcattgacaaatacttcctaggagaaacagctagcacagggcaaac<br>ccagagaagaaagggcatgagacaggagggagctgaagaggaaggtcactgggtgccagagactcatttcaacaatcccacagttttacctggggccaga<br>ccgtgcttaagacccaaaaccagtttatgtcaggttgatgataggttaaaccaacacatctgttagccaattcaaactaatttttt<font color="green"><u>AAAAATCAGCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGTGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATCAGCACCA</u></font>aaaactaattgagctcaagataaagcacacagatatggcaaactcccagagaaatgattttaaggaaggatagcaaatttcaaaatct<br>aactgaggcatggtgacccagcaggactgcagaggatcagggtacctccaaagttgtgaaaatcctgcagacaacaggctaaagaaaactgattccaaga<br>ttgctgatggaaccaagcagggaggggttgagactgcttttgtctgcaataaaattttccactggtcacacatttcttttttcttttctgagtttcaggg<br>tgggtgagcagatggctggagcattggaagagagtgagttcaggaatctcactaagaagggcaaagtaagatgaaagttttggggtcaggattgagac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	470	158	NA	intron:DIRC3:NR:026597:1/13
0	chr2	50562405	50562709	1000145	0	-	Ya5ACA807; RIP_Alu_chr2_050_01	ATCTTTTTGGGGGCAGTTTT	TCCTGTAGTGAGTTTTGGGGA	SINE	Alu	Ya5	aggaatgtcacaggtatttaaactggctgtcatttggatgagacaaaaggaaaaaactgaaactgtttgtacccaatttttacctaaaggtaaatttaaa<br>aatttaaagccattagatgaagttagcttggcatggatttatatccctgaactcgcaccccatctgccacactgttactggcatagagtgggtttaaaag<br>aagatggattactctacacgctcccatagcaatttcactttattatttcccatttagcatgcccaccaggtttcctcacagtctgttggccaaacataca<br>aacaaaatctgtcttcctgttgtaagtttcagaatcatactttaaaaaaatctttttgggggcagttttgtttcaaaatttaaat<font color="green"><u>AAGAAACAAAAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAACAAAAGTTC</u></font>agaatattgaaagaattatatgttctgttgatatggataataacaatattaactccccaaaactcactacaggaaaacgt<br>taaggtctaaactcttatcttcttggggttgcccctccccaacttgtcccacgtaagtgctggtttgtactagattgggccatggatacatacaagtgtc<br>tgatttatctctttgtgggagacaattgaaaagtaactgctgtatctaaaaatcaaatgttgacttttggtaaaaaacattttgataaaatttgatttaa<br>aaagttttgaacataagaattctacttatgtatcagaatttgaatacctaatatttataattatggaagaaaattgactttgcctttatgagattactcc<br>attat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	445	125	NA	intron:NRXN1:NM:001135659:16/24
0	chr2	107292829	107293154	1000146	0	+	52792; Ya5ACA814; RIP_Alu_chr2_107_01	TCTCGGGAAATTAGCAATGG	TCAAGAGGCTTTGAGGAAAAA	SINE	Alu	Ya5	acaaaatatcatgtcatcagcaaagagggacaatctgagttcctctttctcaatttggatgccttttattttttctcttacctgatttccctagctagaa<br>cttccagtaccatttgaataggggtgatgaaactgagcatccttgtcttattccaattatgaaagaaaagactttcagactttcagctttttcccatgaa<br>tatgatattagcagttgatttgtcatatatagcctttattttgttgaggacattgactaactcagttgaacaagattatgttagaaagaagaaacaaact<br>ggaatgggttgttataatacttaggtggtaagataatgagttcagtttgagtccttggcaaatctcgggaaattagcaatggctt<font color="green"><u>AAGAAAGAGGGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGAGGGTCTT</u></font>aaaagcaattttgagtcctctgttttttcctcaaagcctcttgagtagtttgaaatgtg<br>caagaaaattatggcttgccgggcgtggtggttcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcgcaaggtcaggagatcgagact<br>atcctggctaacactgtgaaaccccttctctactaaaaatacaaaaaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctga<br>ggcaggagaacggcgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggctacagagcaagattctgcctcaaa<br>aaaaaaaaaaaaaaaaaaaaaaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	423	82	NA	intergenic
0	chr2	231704440	231704744	1000147	0	+	Ya5ACA868; RIP_Alu_chr2_231_01	TGCAGGAGTTTTGCTTTCAG	TCAATGTTTCAGCAGGCAAC	SINE	Alu	Ya5	gttgaagaaaccagttatctctgttttgtttcccatggtatgaattttgctgagtgcatctttacatgtagtttaatgtgttgtttggtccttcacattt<br>cctgtaaattgacagttgaatctacaagcttgatcacattcacattttttttagggtggtggggctggcggtacacacagttatttccattttcatgatg<br>ttagcagtcgttgataatcatgctgcgatctattcattatatgttacaaaatggtgatataattttatcatttattaactgttcctttaaaagtttatat<br>catatatctctgtgtgtatatataaagattaatgtgcaggagttttgctttcagtgaatgtttgcattccaatcattgctt<font color="green"><u>AGAAAGTTTTTTTGCCCTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAAGTTTTTTTGCCCTT</u></font>ttagagttgcctgctgaaacattgaaataaacatataagaatattatggttttactgtactcttgaaaagattgaa<br>tgtctaaactaatttaataaagaatttctcatttcttgtcttaacacttgttttttctaaagaatgtgtcagagttggaactgttgttagattgagacac<br>tgtcaggttttttatatgcttttgagtttatagccttcacagcctatttcagtctttattgcaattaactaggtaaagttctgcattaggctcctggtat<br>ttatgttctcaggcaaaattttttctaaacctcatggaattgttagtgccttttgggaagcaaaacttaagtctaacttctatcccctttcagaaaactt<br>ttcta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	415	91	NA	intron:PSMD1:NM:002807:16/25
0	chr2	173859991	173860291	1000148	0	-	Ya5ACA924; RIP_Alu_chr2_173_01	AAGGGTGTGATTCTTGGAG	GGCAATATACGATGTGGAAG	SINE	Alu	Ya5	ttagacatataaaactccttctacataacctccaacctgtcacaagcaagggtgtgattcttggagctctagaagtttattataataaaaaattagagct<br>catgcctgtaatcccagcactttgggagactgaggtggggagatcacttaaggctgggagcctgagagcagcttgggcaacataaggagaccccatctct<br>acaaaatttaaaaattagctgggcatggtgacgtatgcctgtagtcccagctactcgggatgctgagtggagaggatcacttgagcccaggaatttgagg<br>ttgcagtgagctgagactgcaccactgcactccagcctgggcaacagagcaagactctgtctccaaaacaaacaaacaaaatggat<font color="green"><u>AAAAAGTTAAAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGTTAAAGAG</u></font>aattcttccacatcgtatattgcccattacaaaagatttctgctgatctctatcttcttcaggggagcatggctattttctttca<br>atttattgctatgacatgtcaggaggtctttctagctcagatttttttccctctctattaccaaataaagcaatttgtcttattttggatcagaataata<br>atggtaattaggtcataaggcatattgctgtgaaagtaaaaattcgatggagtatctttgaagcatgttaccaggatactttggagttgggtttgtggaa<br>aacatgagcttaaattaaggtaaagttttgatcctcagcagtactgcttgaacctgataacaaaactgtcactgaatgccagtgcacacagaggtccttg<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	693	377	NA	intergenic
0	chr2	194106754	194107078	1000149	0	+	Ya5ACA949; RIP_Alu_chr2_194_01	CTTTGGTGTTTGCCAAAGTT	TGGCACAATTGAAACAGGAG	SINE	Alu	Ya5	cccatatactcaaatgatgtacacaataatgtttcttccatagataactattgaaaatctgtagaatctcaggtaaaggttatagaaacggttcctgtga<br>tgcaaggaaatggaagagaattttaggctgctataggctgcaagacagaacagaataatattctgaagagtgtagtcttggttgattaggattatgggag<br>attcttgaaattaaattatatgaataaatttatgaggaaaaagggtcttgatgttttcactctgatgacaatgtttgatgtaaagataataaggtggaaa<br>ttataagctaaaatgttatctactttggtgtttgccaaagtttaaaagagatgaacagtgagatacaggaaagacaacttgattt<font color="green"><u>AAGATATTTCTCATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATATTTCTCATT</u></font>atggtcatactttaactttctatagttcagtatttagtctcctgtttcaattgtgccaga<br>tgtaaattttcatttttttttcattttggattagaaccaaagatatatgttcagataaggcgaacttctatctatggaactgacttataaaaaacagaat<br>gtcacacaataaaattacttatttccagtgttatgaaggtttttaaatcttttccagaacactttttctttatagaatggagaaaacaaagaaaaaatat<br>acatacacacacacataatttgaatgtatataacctcatccattaaatgttgatttcagatacggaaacatcattttgtctctcctggctcttggttact<br>agctaatagccaatcaggatcatat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	476	136	NA	intergenic
0	chr3	17923558	17923862	1000150	0	+	Ya5ACA1003; RIP_Alu_chr3_017_01	AGGGTCATCGTCAGGACAAG	TAGAGGCCCATTCCACAGTC	SINE	Alu	Ya5	agcccagcttagaccaagtgtccctgggctgagctgcagatctctgaaaataaatgaatgtaggtttaatccactgacatttcgggtagtttctttggta<br>gcatttttgtcgcaatacataggtagactggggtcaacatctgatctctaaaactcaccagctgtgtttttgagctatacccacccttttggatggtact<br>cttacatttaaatggggcaagtagtatttatctttagggtcatcgtcaggacaagaaattatacatgtaaaatgctgagcttggggcctctatttgtcca<br>tttgcattgctataaaggaatacctgagactgggtaatgtataaagaaaagacgtttatttggctcacagttctgtaggctgtat<font color="green"><u>AAGAAGTATGGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAGTATGGTGTC</u></font>agcatctgctcctggtgagggcttcaggaagctttcactcatggtagaaggggaagtggagccagtgtgggcagatcaca<br>gggggagagagggaagaagaaagagaggagggaggagtgtcagactcttttaaacaaccagctattgctggaaagaatagagcaagaactcactcattca<br>tcatttcgagaatggcaacaagccattcatgtgggatccacctttcatgatccaagcacctcctactaggccccacctccaatattggggggtcaaattt<br>caacatgagatttagaggggacaaatatctaaaccatcaggcccttgaagtttctgctatagcacctggcccatgcgcccaatgtgtgttgggtgcgtga<br>ataga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	957	637	NA	intergenic
0	chr3	59100274	59100589	1000151	0	+	Ya5ACA1054; pAlu3-58979974; RIP_Alu_chr3_059_01	ACATTCTCATCTGGGGCAAG	GCTGCTAACAGGAATCACTGC	SINE	Alu	Ya5	gttatagattgacaaaaagacacacacacacacacacacacacacacacaggcgcgcgcgcgcgcacacacacacacagccagtgcctgatttaaataga<br>gaaggacatagaaactaattggaagtaggatggccacagatatcatggcaaggcttattcatggcccctagttccctgttgaagcacaacaggtcctgca<br>gactggggcacttctgttataccatgtatctttcatgatcaaagcttacatcatttttccagcagaacttttatttctgtttaagggaaggttgataagc<br>cttatgcttttcattgtgaatcatatatcatcagcaggccacattctcatctggggcaaggacatagtcacagaacagatgcttctaaa<font color="green"><u>GAAGATCTTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>GAAGATCTTTG</u></font>cctccagttgccagtgctctggaaggccaatttccatgcacattgttacttgaatttgcatttttctgactag<br>cagtgattcctgttagcagcactgtgagaagatcaagttggaccgtttagttgtggaaaattataacgtcaatagttttaggtcttttggcctgctaaaa<br>ctcttcagggaaagtaaaggctttgtcgccaactttctggtaactgcatgggggaaaaatctggaagtcttaatgtatagtatggatacatttaatgaat<br>tgttctgttttcagtatgatgccccatcccattctcaactacacttggtgtcctcttattttaccatctccaaaatttaaaaaataagctattttgccag<br>gataggagagggtatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	480	153	NA	intergenic
0	chr3	128813221	128813533	1000152	0	-	22588; Ya5ACA1070; RIP_Alu_chr3_128_01	CGGATCCCTCAAGGATGATA	TCCCCAGCTGACTTCTGTCT	SINE	Alu	Ya5	aagggtgactcatctgaccatcctaaggattaggccaaaattcaaacctaaaaagtctggcttcagactgcatgctgcttctgttagttctttaaaatct<br>ctaagtgttgggcatgaccctgatctctttaatactttaccagatcagtgtccagggcccacggaaggcaggcagggccatgaaactgacagagtagggg<br>acggggtaaacctggggacacaggccctacctgcaagggcagctatgcctcagctccgtcagcgttaccagagaggaacacagagccagcacccacagat<br>cttggattttcaaaaagcatccggatttctatgtgaagtctccggatccctcaaggatgataactaactcaaaataaaaacaaatac<font color="green"><u>AAAAAGTCAGCTG<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTCAGCTG</u></font>cagaagcctgcagggcttcctgctggagatggaatctgcagaagacagaagtcagctggggacaagtgagggag<br>aaggtgctctatgtagacacaaatagcaggcatcaagacacgggagcggggtagggctgcctccatttggggaacaagtcgttttggaacctggggctcc<br>agaagcacatggggatggcccgggcagatgccttattagtgcccaggcatgccatgcccgccacacgctcacctatgggtctctcacctcttcaatcaac<br>agagtgggagattagtggctgaagctcaaggcaaaggaagagaaggtgccagaagagagttcctcaagcatgcagctcctttggcgtggtaggcacagac<br>acagataatcatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	442	120	NA	intron:MCM2:NM:004526:8/16
0	chr3	156131068	156131373	1000153	0	-	4679; Ya5ACA1100; RIP_Alu_chr3_156_01	GCATCCTACAAAGCCATT	GCCTGGGCAATAATTTTCAA	SINE	Alu	Ya5	tcattatttgtcaacagacaaatgggtagatgctaggagtaagtagaggagtaagtaaattcagagggaattttttttttgaagaaaccggggcaaggtg<br>agggtggctttagtttatgatattacccatgctcgctattatgactgtgcttcctgtactaatttccgtatctgttcaagctgaatccacatgcctgttg<br>attggtactttgcttggtttcagggacctctctcaaatgtagcctagagcttctgaataaaaaatatcaagttaagatatttgatgaaagtttttttcta<br>cttgtttgccttgatttatatagtgcatcttacaaagccattgaaattaaaccacatatccataatctgttaagaaaaggtaagt<font color="green"><u>AAAAGAAATAAGGTT<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAAATAAGGTT</u></font>atatgaaattgggactattttgaaaattccaggaagtatgctggcatatatttctcaattgttttctcaacattttgaa<br>aattattgtccaggctgtagatcatgttgtcagtggcttctccccatctaataaaatatgaagaccctctccaccttttggaggaaaatgctggtatctt<br>ggagtttgatactaccgtgtagaaaccaatatactaacttgtaagagacaaaagtttatttactccacgtattgttgaaattttatcataaaaactgata<br>ttctttgggaaaatgattataaaagccacaaattttaacatctattcggttgtaatttaaaaatacctgaattttcagccatttgcagtggctcatgcct<br>gtaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	492	170	NA	intergenic
0	chr3	177625727	177625728	1000154	0	+	Ya5ACA1130; pAlu3-177545061;1104685598701; RIP_Alu_chr3_177_01	AAATGCCTAGTAGGAAAAAGGGT;NA	TCCTTCCCTGCATTCATTCT;NA	SINE	Alu	Ya5	gttccctaacacaatctattacacataatgaataaaaattaatctcgtggattaaagagataagtcagacacaaaactgtaaaacaggaaaggaaaatga<br>taattaatttaccttataaaattaaaatcttcctttagaaagaaataattaatgaagttaaaaacaaatgacagtttgggtgaaaatatatgtatcttac<br>tcaaaaggttgatttctatgagaaagaacttatataaattaacttgaaaagaaaaaaaaaatgcctagtaggaaaaagggtaaagaaatataaacaggac<br>actcacagaataaggaatgaaaagctactaaatgtatcaagcaattatgagaaatgtcaaaaaagagagattttttccccctgatt<font color="green"><u>AAAAAAAAAAGAAA<br>TT</u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>AAAAAAAAAAGAAATT</u></font>aaagactaaagaatgaatgcagggaaggattcagaagaactggccttgacatgcattgttagagtgaatgtg<br>gtccatggggtctaaatggagacagtctagcagtttttactacattctaaaatgcatcgccgggattggtcgctcactcctgtaatcccagcattttggg<br>acgccaaggcgggtggattgcttgaggtcaggagttaaagaccagcccgaccaacatggtgaaaccctgtctctactaaaaatacaaaaactagccgggt<br>gtggtggtgggtgcctgtgatccgagctacttgggaggctaaggcaggagagtcacttgaacctgggagtcggaggttgcagtgagctgagatcgcacca<br>ttacactctagc	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	NA;NA	NA;NA	NA;NA	intergenic
0	chr4	59302363	59302666	1000155	0	+	Ya5ACA1161; RIP_Alu_chr4_059_01	AGTGGGAATCACTATGATGG	GTCTTGACCTCGTGATCTGT	SINE	Alu	Ya5	tgtattaataaatgacacattagtaatgtgtcatttattaatacatgtgtcatttattaatacatgtgtcatttattaataaatagttttccagggtcat<br>gagtttagggacaaagtctgttttcagtcattattgttagttgttttctgagttcatctctattaataccttggaaaacacagccaataacaatgaacat<br>acagtattaatactctgtatttctacctatagcctcagggttttaagattactagacattatctgagtttcaaatggtcaaaaacaagatttgccagaag<br>ttttactatcataaagtgggaatcactatgatggcctgggttcaagttttcacagcagaaacttatgtaattgtaagtcctctt<font color="green"><u>AAAAAAGACAACACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCAGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAGACAACACTG</u></font>ctgggcgcggtggctcacgcttgtaatctcagcactttgggaggccaaggcggacagatcacgaggtcaagacatcaagg<br>gcctccttgtcaacgtggggaaactccgtctctactaaaaatacaaaaattacctgggtgtggcagcatgcgcctgtagttccagctactcgagaggctg<br>aggcaggggaatcgcttgaagccaggaggctgaggttgcagtgagccgagatcacaccattgcaatccagcccggcgacagagtgagaatcggtctaaaa<br>aaaaaaaaaaaagacaatactaaattataaatataaaattaggtacaaaatcaagtacttgtttataatgagaaaataaataaattacaaaataattaca<br>aaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	159	NA	intergenic
0	chr4	66437986	66438250	1000156	0	+	Ya5ACA1168; RIP_Alu_chr4_066_01	TGCCTTATACGGTTGTTAACCC	TTCCTTTGCTTTCTGTTACCTG	SINE	Alu	Ya5	ataataatcaaagaatttgagcaattattcaataatcaatgaatatcactatttagtgttaagcacccttccaagtacttggtaaaacagataaataaga<br>cagttttttacaaaagaaggtaactgtctaatgaagaacacacatacacacttaaacaatatattacattactttgtaaacattttctacaatagaagaa<br>gtcattagtgctataaaaatacaaatatgatctgtatgatgcggcctggtgactctggaagattttattctcaccttcttcaaaaaatattgaggaccta<br>tttacatgccttatacggttgttaacccttaggatacaaagataaagcagatctcctgcacttaatatttcatggtctaaaagtc<font color="green"><u>AAGAAAAACAAACAA<br></u></font><font color="red">TTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAACTTGCAGTGAGCCGAGATCCC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAA</font><font color="green"><u>AAGAAAAACAAACAA</u></font>atatatagaaaaagtaatga<br>atgttatagtggaaagttacgtaacaaatttatgggataaacatgaatattaaagaggaagtttccaaaataaaatatcaggtaacagaaagcaaaggaa<br>cacatatggaaaaaaacaaatttcaggagaatacaatgtacagaggagtgtttccagcagagcgtgcctataggaattagccaaggagaaaactagagat<br>atgggcaaggccaggtcaggagggccaatgaaactatgattgagaattttggatcttttttttagctcattctttatgtttttgcttctaaattttcttt<br>cacataagaagcaaacattctgatattttgggttacaattatacctttgaggaaagttttctaag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	493	214	NA	intergenic
0	chr4	253969	254238	1000157	0	+	Ya5ACA1185; RIP_Alu_chr4_000_01	CAGCTTAAAGGCTTTTCCACA	CCTTTAGACAGTCCGGAAACC	SINE	Alu	Ya5	gcagagcttgcagtgagccaagatcgtgccactgcactccagactgggggagagagcaagactctgtctcaaaaaaaaaaaaagagagaatttgaagtct<br>ttgccacattttaatttttcatatggcttctcatcaatatcatttatcttatgtttagaacacagtgaggtgtggttaaaagctttctcatatttttcac<br>atttctggagtttctctccattatgaattatcttacgattagaaaagattgaggaacatttaaagactgccacattcttcatattggtaagacattcctc<br>cagtacgagttctcttatgtttaagaatgctggagtacagcttaaaggcttttccacatcctttacacttgtatggttttatctccagt<font color="green"><u>AAGAATTCTCC<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTA<br>GCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT<br>CCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTCTCC</u></font>tatgtacataaaggtttcc<br>ggactgtctaaaggctttgccacattcttcacatgtgtagggtttctctccagtatgaatcctatgttcaattagggttttggagctattaaaggtttta<br>tgacattctaaacatttatagggtttctcaccagtatggattctcttacgtttagcagaatttgaggatgaggtaatgactttgccagattccttacatt<br>tgtaggtgttctctccattatgaattttctcatgtttatttatgggtgaggaccgtttataggctttcccacattctttacatttgtaggattcatctcc<br>catatgaattttcttatgttcactcagggttgtggaccatctaaaagctttgccacattcttcacatttg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	378	96	NA	downstream:LOC654254:NM:001137608
0	chr4	98400301	98400605	1000158	0	+	Ya5ACA1204; RIP_Alu_chr4_098_01	TTCTCATCTAGAAGCAAAGGATGA	TGACCAGAACAAAACTTGCAC	SINE	Alu	Ya5	tttttaacttctttgccatgggttcaaacttcctcctttagcatggagtagtttgatcatctgaagccttctttgcctcttctagctaactataaaaagt<br>atttattgtttttaaaatgttgcacatctttaataaaataatgttggttaaaggagttttttattttgaaaagtactctgtaaatggcagtcatttattc<br>acctatccattcatgcatttatttatttatttatttattgctttattctactaaagaatgaagtcatctaaatcagtagaacactgattaccaaacctct<br>gtattgtttcagatgctatagtgacttctcacttctcatctagaagcaaaggatgagtaatatttatgacaacctattcatttt<font color="green"><u>AAAATTATACCCTGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAATTATACCCTGCT</u></font>aattcaaatttggttttacatgtgcaagttttgttctggtcactttttaagttatgtttcagtgagaaataatcagatt<br>gaaacttgcaaatatttatcaataagatggtcagtttatatagtgctttaacttggcagcacctgcttcaatttctcctaacttcctgaaaaagcttgga<br>aaagaaatacgtcattcgtatttctgttcaagtaacattccttaacgaagccttcctgaccttcctgtgagaaatgatggtctttcctctttctccccat<br>gttaaggtactttccaacttggccttattttctttaaaacatgtatatcaatgggaaatcatcatttttgtgtatgtattatttaccttctttccaacaa<br>ggtct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	431	110	NA	intergenic
0	chr10	60654928	60654929	1000159	0	+	Ya5ACA1250; pAlu10-60877322;1104685134451; RIP_Alu_chr10_060_01	GACCTGGGCCAAAATGAGTA;NA	TTTCTGAGGAGGAGGAGGAA;NA	SINE	Alu	Ya5	ggttttctttttgctcttcacaaaatcaaaacaattctcttatttttgttgaaattttggtagtctgttgaatgaaaagattgagaaatattgactagac<br>ctctaaagccatactcagaaagaggagtatataaatctataacataaaaatagtaactctgctatttactcttatctactaatattataataaactgcat<br>aagaataatctggtgaatgctgccagaaatgtcaagttaaaaaaccaaaaaggatgaaaagtttaaaagtctgataaaaaacttactgttcttaatatat<br>attaaagaatttccaagtaagatggtacttttgggcatgagcatcaaactatcccctccataagacctgggccaaaatgagtaa<font color="green"><u>GAAATGAAAATAGAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAG</font><font color="green"><u>GAATTGAAAATAGAGG</u></font>aaaactcttcttaacaataaaacttatgtaaggattccatcaacattatactccctgagtaatatgtgtc<br>atataatttatccatggaatcccattgtaaaagtttgtattcctcctcctcctcagaaaatcacacagtattgcaggaaaaatagtaaagaagctcttgg<br>aagatctgtgctgtcaccctgtgattggatagagtgaaggatggacagctagcaacttcacttggaattttccttgttgccatggattaataattattga<br>aagcagatatgctaggggccacagaaagtgaagctttatctcctgatggtaatgaggcttacctctaaagtggtaagacacttctccatgggaatcagca<br>attcaagggaagaa	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	496;NA	170;NA	NA;NA	intron:PHYHIPL:NM:032439:1/5
0	chr4	142146391	142146691	1000160	0	+	Ya5ACA1259; RIP_Alu_chr4_142_01	TTTTGGAATACAGCCCATTTG	GCACATTCCAAGATTAAAGTGG	SINE	Alu	Ya5	caagtattgaggaattccatattcggtgttaagcagaggagaaggagcctacagatgagtcagaaaagatatacccaagagataggaggaaaaaccaggc<br>aggaccaatgctacaattaggcctgctaagagagaaagcattgttttcagggaccagaactgtaggataagtaagcttccttaaggtggtatgagggtct<br>atgcactgcacaagtacttagaatatttttcctgaattgcagataaaacctatgagaaatgtggctacaacaaattgagtgttaaccaacccatcttaca<br>aattgatttttggaatacagcccatttgtaatttgagtatatcatgtactatgacagaggaacacgttttactttagttagataagaa<font color="green"><u>ATATTTTAAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA<br>C</font><font color="green"><u>ATATTTTAAAAG</u></font>aatggaactatttttttctaataccactttaatcttggaatgtgctataatttgaatttctatttttaaaagctagaatgaagagta<br>ggaaggaaattatatatatacacacatatatatacacatatatatgtgtatgtatatatatacatacatatatacgtatatatatacatacatatatacg<br>tatatatatacacacacacacacatttctccatttcttgggcatttttcttttgtctttgaccactttagctgtcagttctgtaatctcctataaactaa<br>ttgaactcttccttctgtgtgacagcagtaaaattgatcaacaagatccctgggaaagtgacatctggcaacaaggaacaatggaagggaatacagctaa<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	451	138	NA	intron:RNF150:NM:020724:1/7
0	chr4	167114739	167115039	1000161	0	-	Ya5ACA1274; RIP_Alu_chr4_167_01	AAGCCAGATAACCTTCTCGGT	GCTGAGATCAAGAGGCCAAC	SINE	Alu	Ya5	acataagcaggtactgccacggtattttggcaatggagatttggagctggcaatgagaatcccatcctgggttgttggagcttcagcaaaaaatagcctc<br>tgggatataatataagtataattattaaatctttctcttgtactgatggtaaattgtaaaaataaatgctggtgttatatatccagagtttgtgcaatac<br>agggaaaatagtaactctaaggatagtaaattgggtagctaatgctaaactccattaatgcttgttaaatgttaacaaaagattggtcacaattaatgaa<br>tcattaaaagctatgagtgaaagccagataaccttctcggtaatatacaaaaatactgtcatctcctacagcttgatagcagagaaaact<font color="green"><u>AAAGATGAGG<br></u></font><font color="red">CCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTATGAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGATGAGG</u></font>tccaggacttaatcctaagagttacagagtgcagttggcctcttgatctcagcaggtcagctatgccagggtacagttctactttgaaa<br>cccagacacatgggatgaaaaaatataatcttgaaactccagacttctctgatcctattaagaactaacgctggttgggcacagtggctcatgcctgtaa<br>tcccagcactttgggaggccgaggcaggtggatcacctgagatcaggagtttgaaaccagcctgaccaatatggtgaaaccccatctctattaaaaatac<br>aaaaattagctgggcatggtggctcacacctgtatttccagttgcttggaaggctgagacaagagaattacttgtacctgggaggtgcagattgcagtga<br>g	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	444	133	NA	intron:TLL1:NM:012464:1/21
0	chr5	125427899	125428200	1000162	0	-	Ya5NBC18; RIP_Alu_chr5_125_01	AGACCATCTTTAAGAGGAATACCATGT	GAAACGTAAATTTGTTAATAAAGTGGTGAC	SINE	Alu	Ya5	tttcctcatttttacttgctaaacttatgccttcttcaagagttactctctttgctagtgctatgggggcagcattgtctgggtttatgattctggatta<br>atgccagtgtctatattaataagaaaggaagggtgactctgtcccgatatttagcaggggcagggagttccctcagtttatctgacttgacatggtaaaa<br>aaaaaaaaatgaatgaacatgttagtatgaatagctataaagttgggagtctctaagcaaggagctccaatacagtgatcaatgtcaacaagaatgttgc<br>catagcatagaccagtatgctttttaattgatggagaccatctttaagaggaataccatgtggtagtaacaaaggcaacttcagctg<font color="green"><u>AGAAATGAAGCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGTTAACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCGTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAATGAAGCTC</u></font>atagtacaatgcattatattgtacttgctctcttttccctgtgcacatttttttgtgtgtaacatgttctgtttgctttagcggg<br>tcaccactttattaacaaatttacgtttcctgtttctttaaagaaccactttcaccctgaccacattgctagagtgtcactatgttccctaatcaatttc<br>tgtaaacacataaccatggggtccatacagcttcaagagtcacatttgacatgccaatcctgctgcatgctcctggctgctttggctgttgtgccacttg<br>agcagtctcgccatgttcatagggggtttgcattaatagttacagtttttttctgtgcaagtacctctcatcatcttctgtcagtgttttgcttatttgt<br>tt	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	495	180	NA	intergenic
0	chr5	131988139	131988491	1000163	0	+	Ya5NBC1; RIP_Alu_chr5_131_01	GGAATAGGAGATCCAGTAACTTC	GTAGTGTTCAGAGACAGCACTTTA	SINE	Alu	Ya5	ttaacattacaatgttccctgggtccaaaatggctcatagaattatatgcctgcaccaaatgagaacttttgttttttaacttctttgaatattgccatc<br>tctcctagatattagatccagcagtttaaagtggttagtcttggaatttaaggtgctgaaacaagaacataagcaaaacttaaggaattcttgcccagta<br>gactacacatacatatatttgttttttgttttttggttttttttgcctttaataattctttttagtcttctcagctacctcatttatgcctttaggggac<br>tttttagtttttcttagttctttaacaacagatgctgtgtatctaatagacttatcaaacattcattgagcattaaggaataggagatccagt<font color="green"><u>AACTTCT<br></u></font><font color="red">AGCAAGGATATTATAGTTTATTTGAAGAGACACAAATCAAAACAGATTTTTGTTGGTAAAAACCTATTTTGCCAGGCTTAGTGCTTACGCCTGTAATCCT<br>AGCACTTTGGGAGTCCAAAGTGGGTGGATTGCTTAAGTCCAGGAGTTTGAGACCAACCTGGGCAACATGGCGAAACCCCATCACTACAAAAAAATACAAA<br>AATTATCTGGGCGTGGTAGCACACACCTGTAATCCCAGCTACTCAGAAGCCCGTGGCGGGTTGCAATGAGCCAAGATTGTGCCAGTGCACTCCAGCGTGG<br>GTGACAGAAAGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAATCACCAA</font><font color="green"><u>AACTTCT</u></font>ttttggaataagataagttggttgtgatggaaaaataaaaa<br>tggatattaaaagcaagacattggactttgtataaaagtccaacatgataagttttaccttttttaaaaagcctcagaagtccataatacatggttaaaa<br>gtgctgtctctgaacactacagatgtccagattttgaattctttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcg<br>ggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccg<br>gctaattttttgtatttttagtagagacggggtttcaccgttttagccggga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	544	185	NA	intron:RAD50:NM:133482:21/25
0	chr5	22832383	22832685	1000164	0	-	1159; Ya5ACA1318; RIP_Alu_chr5_022_01	AAATCATGAAGAAGAACAAAGT	TGTTGGCCATTTATATGTCTT	SINE	Alu	Ya5	agctctctggatctttttttttttttttttttttttataaaggcactgatcccattcatgggggctccaccctcataatctatttacctcccaaatgccc<br>ccctccgaatactaaagggttagaatttcaacataggaatttgagcgtgacacaaacattcagtctacagcaaatagtcccctgatttttcattaggctt<br>cccttgctttctatttttgacatggataagaccacccattattaactctttgcaatgtgttgtgagattagacacagagtcagttttaaatcatagtatt<br>attttatgaaacttgcttttcctcctatgatataattccttactattttatgtgagattaaatcatgaagaagaacaaagtattt<font color="green"><u>AAGATAAAAAATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATAAAAAATCTG</u></font>aacagaagtttttcaacagaagacatataaatggccaacaggaatatgaaaaaaatgttcagcatcctactaataactgaaa<br>tgcaaatcaaaaccacaataaaataccaccttactccaattagaatggatattatgaaaaagacaagataaatgttgtcaaggacatgaagaaacaaaat<br>tcatgcactgttggtgggaatgtaaattagtaaagccattatggacaagagtatggaagttcctcaaaaaattaaaaatagaactaccatatggtccagc<br>aatctcataatggggtatatatccaaagaaaatgaaatcggtattcgaaagagatatcagcacttgtatattattgcaacacctttcacaatagccaaga<br>tgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	400	81	NA	intron:CDH12:NM:004061:1/15
0	chr5	168327024	168327321	1000165	0	-	Ya5ACA1370; RIP_Alu_chr5_168_01	TCATCTTTTCTGCCAGCCTT	CTAAGCTGCCTTGCATTCCT	SINE	Alu	Ya5	aaggaatggcatatttaatgggaggggagagataaatcattcttaatctttatgttcagggaggagaatggtaaggaatcttaaaaacccactctccttt<br>ccaaggcctggggagagccatgaggaaggaatttgaatgcctgccagagcaggtgagcaaagcttgggaagagaatctggtgcaggcacgaaagtgctag<br>caggaggtacgagagtgtctgaaatctctactggagagtgcagacatcatcttttctgccagccttgcatggtgggaagtagagtgggaacccgaggctt<br>tattcttcctgcagatgaaggctgaccacaccagatattgtgattgtagagggacaggtgcaatgaaaggaatgaaaaatccctc<font color="green"><u>AAAGATTTGAGATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAGATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AGATTTGAGATGG</u></font>cagtgccagaggaatgcaaggcagcttagaaaaattatgacgcaagtgttatatatttactgtagagaagttacatgagacagagaa<br>gccaaaaaagaaaaataatttaaactcatgattgttcacctagaaataatcactagcaatattttggtgcaattttaccccagtgtgtgtctctcttata<br>tacacatgcacacacacatttatagcattggattatactatatgtactctttggaaacctaccttctcactttaaaaatatatacagagcatttttccaa<br>attcataaataacatcctttttaatggctattgttcttccattgtagtaggtgggccatgacaactagctcctacagttgggaaatttaggtggtttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	496	183	NA	intron:SLIT3:NM:003062:4/36
0	chr5	109325006	109325307	1000166	0	-	21141; Ya5ACA1376; RIP_Alu_chr5_109_01	TTTCAGTCTTGGACCATTTCAG	TCTTCGACTCATGTTAGGCAC	SINE	Alu	Ya5	cttcgctatcctggaaacagactctcttaataagtgctgtaattatataattcttaagttccaggctccactagcaagtttgagaataagggaagtatca<br>caaaaaaataaaaagcagaagaggttgcaagacccaaggaaacaccactcagctggttttctatgtatcaagagttatgcaacacaaatgttctcactca<br>gaaatggatcctgatggcattacttttgtactgaattaagttccttcaaaaaacagtttcagtcttggaccatttcagttatgtgagtcaataagtcttt<br>ttgcttaagctaggtcataaggtatatgcaatttatgcatctacattataaggctttcataaataactaaacaaggtaatggat<font color="green"><u>AGAAAGTGCCTAACAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AGAAAGTGCCTAACAT</u></font>gagtcgaagatacaataggcacagttaaatgtgagctctcttcctctcccaactattttcactttattaaatccacacttaa<br>attggacattaaagtttaaattgttattagtaattccagtaaatttcattattaactcagttaattaccatttctcctcttgtagggctctgaaccctct<br>tccatcttcttatgctcaattgcaggagagaggaaggaggaagaatggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaggagggagggagg<br>aagggagggagggagggagggaaagacacagaaaacctctagccatatgcacaatctctctctcttttacctgtcctattggaaatacggactaggactt<br>ca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	472	154	NA	intergenic
0	chr5	133790522	133790816	1000167	0	+	Ya5ACA1400; pAlu5-133793787; RIP_Alu_chr5_133_01	AAACTGAAAATGCAGGTGCC	TTCCTCTGAAAGGCTGGAAA	SINE	Alu	Ya5	ccaccgcgcccagccttccagctggtccttatttatcctccagcactttcagctgttctgttccgattttgatccatgcaacgcgggggatggggggaca<br>atccaacaggtgaatcctctcccacccccagaaatggctcaaggagacctcctagtgggttacaggaccactgagccatggaccccagggtcacctttct<br>tcccaccacagtcaagctcagcacataacttaaatgcatagtggtcccggaagtgtcaaggagaacaaaatgcccatttttttccctccatacacagcaa<br>aactgttctaatacagccaaatgaactggagaagcagttttattcttgcccttcctgccgaggaaaaactgaaaatgcaggtgccgagaaaat<font color="green"><u>ACTAAAT<br></u></font><font color="red">GGAGGCCAGAGGCGGTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAA<br>CATGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCG<br>CTTGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAA</font><font color="green"><u>CCTAA<br>GT</u></font>agagagtgctcttggagcagggtttccagcctttcagaggaaagttggaaaacgctaaaagttttcaaactttgggatcttcagctcttacagaagta<br>tctaaatcccagctacttgggaggatcccttgagcccagaagtccaaggccagcctaggcaatgtggcaagacttgtctctaaaaaaaaaaacaaaacaa<br>acaaacaaacaaacaaaaaaacgtaaattctaggttgggcacggtggctcacgcctgtaatcccagcactttggaagaccaaggcaggtagtttacttga<br>ggtcaggggttcgagaccaacctggccaacatggtgaaaccccctctctactaaaaatacaaaaattagccggacatggtggtgcgttgcctata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	677	379	NA	intergenic
0	chr6	12772190	12772496	1000168	0	-	52592; Ya5434; RIP_Alu_chr6_012_01	TGATCATGACCTTCGTTGGA	GTCTCTGGGCCTCCAAATCT	SINE	Alu	Ya5	cattacccccttagcaaaacctttcatgcttcccacacctggttatgacaccttttgctataagctgctttagaccattgtcagaactcttcttgggaca<br>tttctcttcagagcatattgtggtaaccaatgaacctgtgatatctcccacgggctgctagcatgttaacaccacatctgatatacacctgtgtctgtca<br>tggtacttatcctagagcttcacaccaggggtctactttttttagattgtatacttccattatatttaaaaaacatgttctagcatatatcactgtcgtg<br>ggttgaatatggtgaagtcctgaacgccgttacttgtgatcatgaccttcgttggaaacagggtttttgcaaatacattcaagtt<font color="green"><u>AAGAAGTCATGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAAGTCATGCTGG</u></font>attagggcgagttataaatccaatgactactgtccttatcatgaggaggagatttggaggcccagagacatgcagggg<br>aagaggccttgtgaagatggaggcagggattggagtgatggagctgcaatgcaagccaaggaccaccatgaattgctggcaaacactagaggctaggaag<br>aggagaggaagtgttcttccctggggccttctgagggcatgtagcccagctgacaccattgggtttgaacttctagcctcttaaattgtgagaataaatt<br>tctgctgttttaagccatccagtttatggcaatttgttatggcagccctaggaaactaatataaccacctctatggaaattaatataaccacatatatag<br>gtggtta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	455	133	NA	intergenic
0	chr6	89480886	89481179	1000169	0	-	Ya5ACA1441; RIP_Alu_chr6_089_01	CAAATGCAATTGGAGTGTTCA	ATTGGGCTAAGCACAGGATG	SINE	Alu	Ya5	tgtacattgattttgtatcctgagactttgctgaagttgcctgtcagcttaaggagattttgggctgagacaatggggttttctagatatacagtcatgt<br>catctgcaaacagggacaatttgacttcttcttttcctaattgaataccctttatttccttctcctggctaattgccctggccagaacttcaacactatg<br>ttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtt<br>tgtcatagatagctcttattgttttgagatacgtcatttcacaaatgcaattggagtgttcagtttacatttttaaaagtactttt<font color="green"><u>AAAAAGTACTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAG<br>TACTTTTA</u></font>ctttcagcttgagtcactcttcccaggctttatccaggtggcttaggttagctagggctgtgtcccgtgatgtacagtccctttacacaatg<br>ttggagataaaacttggcctcatgtcttgcttcatattcccacagcctctcagagtcctgtggacaatgactagggagacaaaccatgcaagcaacatat<br>tttttaaaaggtcagtttcaataatgacttaattttaagttataatttcatggaacactttcatcactttctttttcacagtattttacccagttattaa<br>ttaatctaagtagtgtatcttcgggaggtaagacagttatttccattttatagatgaggaaatcaagaaaagtcatttagtttatgacttatcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	849	541	NA	intron:RNGTT:NM:003800:13/16
0	chr6	105328659	105328957	1000170	0	-	Ya5ACA1467; RIP_Alu_chr6_105_01	ATGTGGGGAATGTTTGGGTA	TCCCCCAACTATTTTCATGC	SINE	Alu	Ya5	ttatacatggtgagaatcttgactgctattcttttgatacaatcttggggccagtaaacttaactattctgcgcctttgtgtcctcatttaaaaatgatg<br>atacctgcttgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaaaagatcaagaccatcctggtca<br>acatggtaaaaccccatctctaactgaaaatacaaaaattaactgggcatggtggcatgtgcttgtagtcccagctacttggtaggctgagggaggagaa<br>tctcttgaacccaggaggtggaggttgtagtgagctgaggttgtgccactgcactccagcctggtgacagggcgagactccgtctc<font color="green"><u>AAAAAAAAAAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAAAAAGAGA</u></font>aaagatgataacctattttttgtaatgtggtaagaactcagttagctgatatgtgaaaatgcttagttggtgcctggcatatagaaa<br>gtataaatattatatgctattattattacatgaaaatgatattattgtatactaggatttttctgagagcatgaaaatagttgggggaatcacagctata<br>tatattttttgaacttaaaatttatcataaacttttaattctatttaaaattttcaagttaaaaactgttactccttttctgaagattttctccctatat<br>gtttccttttttttttttaaaaaagtctccttatctattctttttaagcatctagatttctcagaaagtaattagagaaggaattaaacacagagctag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	1011	700	NA	intron:HACE1:NM:020771:17/24
0	chr6	119638149	119638468	1000171	0	-	Ya5ACA1480; RIP_Alu_chr6_119_01	TCTGTAGCAAAGCACATGAC	GGTTCAAGCAATTCTCCTG	SINE	Alu	Ya5	ccaagtacacagtatcagtactggggtaattacgtcatctccatattgtagatacactgaagctctgagaagctaattccttagccatataggacatgac<br>agaaatgggattacactctgctgtctgtagcaaagcacatgaccgtgtccacatattattcccaaaaccagtgttgccagggttggtaccacaacttttc<br>ttccttttctgtttacttgcttatcagttacatacctaaatctcataaaaatgaaatagcagttgccgggcacagtggctcacgcctgtaatcccagcac<br>tttgggaggccaaggcgagcgaatcacctgaggtcaagagtttgagacgagcctggccaacatggtgaaaccccgtctctactaaaaat<font color="green"><u>AAAAAAATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATTAG</u></font>ctgggtatggtggtgcatgcctgcaatcccagctactcaggaggctgaggcaggagaattgcttgaacc<br>cgggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggcaacagggtgagactctgtctcaaaaaaaaaaaatgaactagcagc<br>aaccttctagcccatgaaatcttccacttcttgggcaacaaagaataattaagttatgaaaactaaaccataatcacactcgtaatgcttatgagttaat<br>aatagatttttgcacaagttgtgtttgaaaacatttattcattgcacttaagtctttctcaaaacacaaagctgtccttgaatttttaatatagttcatt<br>aaattgaaaaaattctcatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	677	346	NA	intron:MAN1A1:NM:005907:5/13
0	chr6	65241884	65242187	1000172	0	+	Ya5ACA1549; RIP_Alu_chr6_065_01	CTCTTTCCCAATGTCTCTCCTT	TGTGCCAGGAACTGTGTTAAG	SINE	Alu	Ya5	tggtacttttcacttatgttcctctttttggctacagtaaaggagaggaaacacatcattcaggaaaatggacagccacattttctttgaagctgagctg<br>attctcctgggtctcttggccatgaggcaatggccaacgggaaatataggtgagaaaacataaatttacaaatatctttctgttttattttacattataa<br>ttaagtcagcagaatactatcaagtttgaattaccaaagatatttttgtgttcacaagttcttataactctttcccaatgtctctccttaatttgacaag<br>ttttctcatgtggtatcatacactgtatttctgcctcatattatactccacaaataggttctacttcatagtttgctctgaatagtaaat<font color="green"><u>GAAAAGAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>GAAAAGAAAA</u></font>aataccaaatacttaacacagttcctggcacatagaaaacacttcatatcaggtaaatatcatcatgattgtgtcctcggcccaat<br>tcttgctctattaaaaaagtcacttaaacacccaaagccttaacttcctcttttttaaaatggtaaaaggaataaaaaaaaatcatttaatttgtatgat<br>tgttgtattaaaacattactgttgtgatgttttttaagagacaagctctccattgcccaggggctggagtgcaatagcatgttcatagctcactgtaacc<br>tcaaactcctgggctcaagctatcttcccacctcagcctcccaagtagctaaggctacaggtacatgccagcatgctcagttatttttttgaaataactt<br>ttgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	479	165	NA	intron:EYS:NM:001142800:26/43
0	chr6	67291997	67292326	1000173	0	+	pAlu6-67185333; Ya5ACA1555; RIP_Alu_chr6_067_01	CGGTTGGTTTCAATGTCCTT	TTTGTTGATCCAGTTTTATATGGC	SINE	Alu	Ya5	cacataatcaaaacctcctgcactttagccagttataccgtggatttggatgagacaccaggaaacaacacttgtattcttcgcagtgcccttcatgtat<br>tgatggtactattacatccaggacatttaagtcaatatattcatagtatagtagacctgaaaaatactagagtgattttccatgtaactttctgattttg<br>ttcattaaaaaaaaagagttctctagagatcatttgacttaaggtaatagctggttggtcattcagctgagaacagaatacggatcctggatctctgtaa<br>aagccactattctacaaatagtagttacggttggtttcaatgtcctttaaaaatagcatgataatttttttacctaattctataaat<font color="green"><u>AAATCAAATTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATCAAATTGAA</u></font>aataaagccatataaaactggatcaacaaatatctatttaaatttactctacttaaa<br>gtaacactagtctgagaatattgttttcttttatttataaataatgcatgactgataattataaataattatctggtgattcagtaagatcatccaaaga<br>ccagtatgaacaaaataatgtaaaactaaaattgcattttctataatttaaagggaaaatctctgacttctgagtttgtattttggtaagctaaatgtgt<br>ctgtttgcttccattcactattgcattgaaatatgcaataacgaagaaaaaaagtatacatttggaacaacaattaaatgcgtttccttaccttgcacga<br>agtaactctaaatatgattaattaaagcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	446	103	NA	intergenic
0	chr6	74320604	74320924	1000174	0	-	Ya5ACA1561; RIP_Alu_chr6_074_01	TGGATGAACTGTTGAAAAATATCAC	TGAAAAGAGAGTGGGGCAGT	SINE	Alu	Ya5	agtctcagctacttgggaggctgaggtgggaggatcgcttgagccctggaggcagaggttgcagtgagccaagattgagccactgcactccagcctgggt<br>gaaacagccagaccctgtctcaaaacaaacaaatgacaacaacaacaacaaacccatagtgtaacttgaaataatgtaaaaaaaagttattaaaaaacat<br>aatttatggccgggcatggtgactcatgcctgtagtcctagcactttgggaggctgaggcaggaggatcacttgagctcagagcttcaaaaccaccctgg<br>gcaacatagtgagattttgtctctattcggttaaattttttttttaaaaagacacactttttaagaaaatatggatgaactgtt<font color="green"><u>GAAAAATATCACTTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAATATCACTTTT</u></font>tttttttttttttgagacagagttttactctggcacccaggctggagtgcagtggcatgatca<br>cagatcattgtagcctgaaactcctggtctcaagcagtcctctcacctcagcctcctgaatagctgggcacacaccaccatgcccagctaattttttaga<br>aaatattttgtagagacaggggattgctatgttgctcaggctggtctcaaactcctggcctcaatcaatcttcctgcctcggcctcccaaactacaggga<br>ttataggcatgagccacctcacccactgccccactctcttttcatactaaatgcatataaagctgggtgcagtggctcaagcctgtaatcccagcactat<br>gggaggctgaggcgggtggat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	673	336	NA	intergenic
0	chr6	95630414	95630723	1000175	0	+	Ya5ACA1583; RIP_Alu_chr6_095_01	TTGAAAAGATAAGCTGCACA	TTTGCATTTCCCTAATGACT	SINE	Alu	Ya5	aatctcaaaccacacctcatactttattcacaaatacctcaaaatgggttatacacttgaatctaaagtgtaaattgataaaaatagtaaaagaaaacat<br>agaaaaaaatctttgtaaccctggattaaacaattttttctttaaatgcaatactaaaagcacaatctataagatgacaaataggctttaattaaaatta<br>aaaacttctgtaaaagttcctctgatcagttgaaaagataagctgcacacagggagaaaatgtgtgcaaattatatatcccacaaaaaaacttgtatgca<br>ggctacataaggaactctctaaactcaacagtaagaaagcaacctaatttaaaaacggacaaaagatttaaacagatacttcagc<font color="green"><u>AAAGAAGATATACAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAAGATATACAG</u></font>atagtaaataagtagctgaaaagatactccaactcatcagtcattagggaaatgcaaattaaagtcacaatgagg<br>taccactacttccatattaaaatagcttaaacctaacaaactgacaataccaaatattgctgtattaccagttaagtctcagatacacttttttcttcat<br>tatctaatctgaaatcagtctcaattttcacatccataaaatgtggctgctaattaatgcttgtcctcacttgcttattgtgctgttgtgaaaaacaaaa<br>gcaattatgtagaaaacattttgtaaaatacaaagtaatttactaacataatgaaaaattattattgtggaatttcagtgaagatttgagaaaaggttca<br>aaatgcaaat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	556	229	NA	intergenic
0	chr7	93796280	93796580	1000176	0	+	Ya5NBC212; RIP_Alu_chr7_093_01	CATTTGGCGCAAGTGGTATT	ATCCCAAAGAAACCCACGA	SINE	Alu	Ya5	gataaagggagagctggcacatcagatggcaaaatcaggagcaaggtggggggtaggtgccgcatacttttaaaccaccagatctctcgagaactcactc<br>actatcacaagaatggcaccaagcagatggtgctaaaccattcatgagaaatccaccctcatgatccaaccacctcccaccaggcccctcctacaatact<br>ggagattacaattctacatgagatctgggcagggacaaatatacaaactttatcgattactatacataaagtagataagtcaagtgtgcaagtctggagt<br>acagaagaaagtctaggccagacatgcaaatttgggaattgtccatatacatttggcgcaagtggtatttgaatcccttttcttaggct<font color="green"><u>AAAGAAATACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGAAATACA</u></font>aaagcaacatgcaatacatgaattatatttaactgtacttcaatgtccacttaagaaaatagttaacaaaaatatcatgaaataataa<br>atcaaaccttattaaattttaggttcactttgtcgtgggtttctttgggattgtaaatgttagtaaatatttttttttctggatgaaaataacaatcagt<br>ctacaagatatcatagagttccctccttattctttaaacaatttctttgtgaatatacattagattggcttttactattatagtcattgtatcaaagatg<br>accccattctgaattcttacatgaaatgatgttttaatttgacaactaattacagttttcttcacatctcatgatctcagaaaatcaagagacccagtct<br>g	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	502	190	NA	intergenic
0	chr7	140842695	140842958	1000177	0	+	Ya5ACA1667; RIP_Alu_chr7_140_01	TGTCAGTGGCCTGTGAGAAC	TCCTCTGTCATGTCTTCTTTTCC	SINE	Alu	Ya5	cttggggattcggccattctctgcagtgcccagcacttccttggacctgtgggccccagagctctctcaaaaagagctcctaagctctggggccagatgg<br>agcaagctaagcacatgctcctatgaagacctggcccccagtgtcagtcactggagatgtggcctcttgaaattttccccttatagttgggacacagtgt<br>cttttcatttttcccagggatttctcctggggcaagatggaggaggccagctcttgaacttttccccttgctgtcagtggcctgtgagaacctggtatgt<br>gatccatataaggatctttctccttggcatgtctttctttcagctttctttcctttgctttcttcaggagagattaaaagaagctt<font color="green"><u>AAAACCTCTGTAGA<br></u></font><font color="red">TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC<br>CAGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCC<br>CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACCTCTGTAGA</u></font>agggaaaagaagacatgacaga<br>ggaatcattttaaaatcactatgtttctccaaaatatggaattactgcaaaaaaaatggtctaaaatcaaaagaatcctagtttttcacttctggaagtc<br>aatgttgagtctctgtgtttgacctatatatttccccattgtattcaatgtactgatacataaagaaagcatctcagtatgggggtaaggtggtagtggt<br>tcagactcccacagagatttggtgaagacagggagaagatctttcacatacaggctgaaaacaagttcaaaaatcaggtagaggctacgagattgctgtg<br>gtcagtgtggggctgcaggcttgagcctgaggctgctcaaccagttttgctcttgaagtccctg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	432	154	NA	intergenic
0	chr7	39836572	39836869	1000178	0	-	Ya5ACA1696; RIP_Alu_chr7_039_01	TGCAGGTCCATACCTGAGTG	CATAGGTTGGGAGAGGTGGA	SINE	Alu	Ya5	ttttacaaattcaattattcatatttctttaaaatgcttttttgtaaccaactttccattacaaacataaaacaatgacaggttgaccactgctaaattt<br>taagagtaaattatatagaaaactagattcataatgagaaaattaatttcacatgtgagcactttaccttgatatcacaatcacggtcttccttagctga<br>tgtaggctgtaaatcattgatcgcctgtttgccggaaagcctttagagcaaaaatatacaacaaaaatgagtgtgttcatttctttaagaaagtaatttg<br>caggtccatacctgagtgtcacctccaaaaaaacagaaatagaaacaaatctggtgagagactagctatctgtatattaatgttgctt<font color="green"><u>AAGAAAATTAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAA</font><font color="green"><u>AA<br>GAAAATTAAA</u></font>atttggcctctgttgtagattttagttacttatttctatttccacctctcccaacctatgaaatagtcaagacccacgcatagttccgta<br>acaaatcatggcagccaatacactggcatagtctgagaataatttgtcttcacaaattgtatgtcctacaggctgagctgaaaatccaattaattgctga<br>cataatttttaatacctgaactggaacaaacctgataatctaaaacaaggtagaaaaatatagagtctcctcttcttcatttatttctggttcaaagact<br>aatctctgtcactcaaaaatggcagcctgggttcttcagcacggaaatcacttaagaaggcctcagtgcgggccaggtgcggtggctcacgcctgtaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	472	162	NA	intergenic
0	chr7	42614186	42614187	1000179	0	-	Ya5ACA1702; pAlu7-42354424;1104685592768; RIP_Alu_chr7_042_01	TCCCCCATCTCTTTTTCCTT;NA	TGGATAAAGCTGCAACACCA;NA	SINE	Alu	Ya5	tactttatctgtctcatgacttttaaaacgtgagctgttgattttcctacgtaacttgtgtgtgtgtggaaatctccttagatttacacaaaggtgaata<br>cttctaaagacaattatgactttcctctgccagttgacaactcgtctaggattatttaaactaaattccattctcagttttttgggccatccaaatacta<br>tggaattgaggcagcaaacaaacacgagatctaacctataaatacagtttctcagagtctattttcccctttcactcagtgccaggatttgaaaacttgc<br>aattctcccccatctctttttcctttttcccattttcttgtaggaggatggggagagtttatttctagttcatacttatgctt<font color="green"><u>AAGATAAAGACTTTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATAAAGACTTTTGG</u></font>tgttgcagctttatccagggaggtctcctgttagacactgtcacttaaagggagctgt<br>gctttattttctgacctctacaccttacaggctcataacagcttaaattgttaagttctgaaaatattctcaaggtaaaaatactgaacgaaattctatg<br>tttgcctctctatgttctcatcttcccttagattttggcctgagcaaacattactttcttgctagctcaccaaatcaatcattcagcaaatatttgtgaa<br>gcccctacaatcttccaactactattctatgtgttgggaacacagcagtgtaaaaaacagacaataatccctactctcaaggaatttatctcagaacggt<br>tgagtggtggttttcataatatttt	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	454;NA	112;NA	NA;NA	intergenic
0	chr8	64307429	64307669	1000180	0	-	Ya5ACA1770; RIP_Alu_chr8_064_01	CCCCAAGTAGCCTGTCAAAA	CAGGCAGCATCACTACCTGA	SINE	Alu	Ya5	gtattgaaactctaaaagtaatcacgaatctgtctatttatttttccagttgtgacaattattgctttgtttaatttcaggtctctgtcaatgttttcat<br>aaattgacattttcatcattaagaaatttctttctttctttctgttattattccctgtcctgagtctaatttgactggttttttacagccactccagcta<br>tccctacacttcatgttttcatgctacatttttccattctttttttaacctatctgtgtctttacataatagaaactaaccctagaataaatactactct<br>aatctgccctaatatatcttaatagcaagcctcaaaaaaaatcaagctaatccccaagtagcctgtcaaaataaaattcaaatatttttt<font color="green"><u>AAAGGAAGAC<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAG</font><font color="green"><u>AAAGGAAGAC</u></font>aacaaccaggaagtcaagcacttaaatgccaactaaaaattaccagac<br>atgctaagcatcaagaaatgtgatctctaattaggagaaaagtcagtcaacaaaaatagacccaggaaatgatggtaataataaaattaatgtataagga<br>caaattcaggtagtgatgctgcctgtataggctgtgctagcctgatcagccacattgttttatttagtcttatctcagtatggactcttcccaaaagtat<br>tcacatggattatataaatgccccatctggctgtagcaacgcctttccagagcccacagcctcacagagatgtgtctttaacacaccagtcagtcatccc<br>ccaggtattcaaccaaatagttatgctgttagtcacagccca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	473	222	NA	intergenic
0	chr8	87965214	87965529	1000181	0	+	Ya5ACA1793; RIP_Alu_chr8_087_01	TTTTTCCAAAAATGCTGGGT	GTTCATTGACTGGGTGGGTT	SINE	Alu	Ya5	agctgagaagagaagacaagggtaatgagaatggattcttggccaacgtcaatgcttaacggaagaagatagcattcaatggagcagtctaataatggga<br>aagcaagaaaggagagaatggtgtcacaaaaacccagtaagaagaaacttcagtatcaaacatcacacagggcgtagtaagatgaagactgaaaggaggt<br>tatttgactagaatctaaaaggtctctgatgatcttaatgaaaaaaatttcaaaaaatatgaagaagattaattatagtagatggaagagtaaatttggg<br>ttggggaaatagaaaagataaacgtagattattttttccaaaaatgctgggtataaagagaagttattttgataatttgttgtaaaaca<font color="green"><u>TTGCCCCTTTC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAACAAAACAAAACAAA<br>ACAAAACAAAAAAACC</font><font color="green"><u>TTGCCCCTTTC</u></font>cgtttcatgtgtccccaccactcccccactgcccccattttctcttctcaggtaatacagttctattttaaca<br>tcttaacccacccagtcaatgaacagggacaatctaggcccacttgggaattgtctctgtcagtgtgccagcatttattaatagaaaactttgactgggc<br>attattcttttgcctctgaaggtttatttagtcaccctttttgggtgccttatgtctatctaatattatattatttaaagaaaaattacctttgagattt<br>tagaaaacaaaaactagttgaaaaatgggtagatacactatgaaccattaacataggtatgtttagtgacctcactagataggtttagacttattttaaa<br>acatactcctccctgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	492	165	NA	intron:CNBD1:NM:173538:1/11
0	chr8	99426012	99426321	1000182	0	+	Ya5ACA1805; RIP_Alu_chr8_099_01	AAAAGGCAATACATGGCTGG	TGATGGGATTAGCACCACAA	SINE	Alu	Ya5	gcaaactatcatctgacaagtccttaggaaggtactgttttcatctgaagataaattttacctaaattctaccatgtttttcaatgctgcagtcctcctc<br>acctggaatccttccatccttggctccctgtatctgcaatgcaaaagaaatacaaacatttacctatagcaaaactctgagaatctccacaaagtcaggc<br>tgccaggaaagcctaagagcctgggaaggagaaggaggggacaatacattctgcatggtttaggcatccttgctgcccagtgccttttaatccccttggc<br>aaatggcctgggtttattttttagagtgggttgggcaaactcagatggaaaaggcaatacatggctggagcacaggagccatgagt<font color="green"><u>AGAAAATATGGGAC<br></u></font><font color="red">CCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAAATATGGGAC</u></font>tctccaaattctcaccttgtggtgctaatcccatcacctatagtaatgttgcaaggcaggtgaaagcttgaattct<br>atctccaaggttataaaggaggtataaaataaaacatctatcaaatattttgagacccttagaagcacagaatgttatagctgaaaatcctaggtgtctc<br>tgagaatgtggaaataggccattttagcttaaaacaaaacaaaagattgcaatctactgagcctgaagtggtttgagatctatgtatgcttaatctagca<br>atgtatgtcccaaatactgcaggtcctcttgactttaatcatggaaagatgatcccatattcattgagaagaaataaataaagcagcctctttaacctgc<br>ctttcccaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	412	88	NA	intergenic
0	chr8	97657824	97658122	1000183	0	-	Ya5ACA1806; RIP_Alu_chr8_097_01	TCAATGGTACAACCAAACAACA	CCCTACTGCCTTCCAACTTTT	SINE	Alu	Ya5	gttccatcaagcaagaaagcaagatgccagcaacagatatggaaagttcagtcttctctaggaaaatagctcatttgtgtacaagtattaaataatgagt<br>tgcaccaccgttccatccacctagccagcacaatcactgggatttctctgatgtattaataaactgcagaggattaaaagtctactacatctcaatacat<br>tcttgggacaactgagaaatgtaaatatgggttgaatattagaaatgtattcaccattaactttcttaggtgagattgtgttttctcctttttcccaggg<br>gataaatgctgaatcctcaggggtcaagtatcctgatcactgaaatttactgtcaatggtacaaccaaacaacaaaaaaaagctgtatat<font color="green"><u>AAAGAGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAGAGAATA</u></font>ataaagcaaatctggtaaaaaaaaacaaaacaaaacaaaaacaaactaccaattattgaacttatgtggagaatattgtcctatgctttca<br>agttctctgtgtatctgcaaattcataatttaaaagttggaaggcagtagggtaactccagctgaaaaaacttcaggtgacaccagagctggtattaatc<br>actaatgggaccagaaagtaccgccttcataccaggtacaagaatgaggtgaaatctgctaaaaattatactagcctgtagttagctgacttaaataaat<br>tgggcccacaaaagactgcatgatgtatttgtgtgtggggatcggggagggtggtaaccacataatattctaggagaaaagacagctatgaacttgaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	500	191	NA	intron:SDC2:NM:002998:1/5
0	chr1	70540716	70541022	1000184	0	+	Ya5ACA589; RIP_Alu_chr1_070_01	CATTGCTTGAGCATGTGTCC	TGAAGCTTGGAGCCCAAATA	SINE	Alu	Ya5	tcacagacaaggcaaagtgagttggtattcttggtttccctagacaggaaaaacagaaataaaacatgcctcacatgctgcatgaaaataataactaggg<br>ttacatagaatttatcatcaaaattaataaatctaagaatgaaagtgacactactgacaattctgccaggaaaacaggggtgagccagagcaaagaggga<br>agtatggttgccttatgtatcaagaagccctaaaaaagtaactcatcaactcacacaggggcggcgggggggcggggggctgcctgttgctttatagctg<br>aattctagcttttagtccactcccagaagctagaattcagctttactattaaataacacctatcattgcttgagcatgtgtcct<font color="green"><u>AAAAGAAAATAGTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAGAAAATAGTATT</u></font>aaaagggactcttcccctatctctataagatgtgggctcctgataataccaaaaaggaacagatcattttatatgta<br>agtgcactatttgggctccaagcttcagctatcagggaatgttatgctctacataaaagaagaaatgggctaaaacagtcttctgcctccattccctgct<br>tgcccatcataggtgaaagtggtagtgggttgccaggagtggagatgaaaaggtgagtaaagagatgcacagaaagacagataaagaaagacaaagacag<br>actgacatggtgacctttgagattttagatctagcgatatgtaaaattagttatagaaacttcccagttatataaattaatacagcctatttttatttca<br>ttcgtgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	464	141	NA	intron:ANKRD13C:NM:030816:6/13
0	chr1	223411037	223411339	1000185	0	-	Ya5ACA637; RIP_Alu_chr1_221_01	AAATGCCCCCTACAAAGACA	TGTGTGTCCCTGCATCTCTC	SINE	Alu	Ya5	aactaaaatttaagcgtaagatagctaatgtaaccttgttgtacccattatgattgtcttcatcataccacttttttggaattagttgagacccactttg<br>tggcccaatattgtgttaaggactataaatcttttaagtgtatacttggagagatgttaattctctagatgttgccaagaaaatctttcctaccacaagg<br>gtcctaggacttcagctgttggataattagtttgttttctaaacaaaaagatttggaaaattattttaaaggaaagagggagaaaactgcctttttccct<br>taaaagaaaaaaaatgccccctacaaagacatattcactttttaatccccagaatctgaatattatttaatatggcaaaagaggtgatt<font color="green"><u>AAGAATTTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATTTTAA</u></font>gaggagtttatcctagagtatccagatgtaaataaaatcacatgtatcctaataagagacagagagatgcagggacacacagagga<br>gtaggtgatgtgacagtgtgtctacctttgagtcattgtgtccaagtgactgccatacactgattgactagagctgaggttatgttactttagtgactat<br>ttgaaaatgttacatttcctgtaatttgacggaacaataacagattagagtgctgtggtcgtaagccaggaaatgcaggcaaccaccagaagctggagga<br>ggcaagaaatggaatctgcccaagagtctctggagagtaagcaaccctgcccacaacctggatgtcagacttctggccgcaggtcctgtgaggaaataca<br>ttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	170	NA	intron:DNAH14:NM:001373:33/84
0	chr1	78316179	78316483	1000186	0	+	Ya5ACA645; RIP_Alu_chr1_078_01	TGAGCAGGAACTTTGCATTC	CAGATCAGTTCTTCACGGGAG	SINE	Alu	Ya5	taaggatttcattgtacaatgaaaaacatcattaagattatatctactgaatcagtcattttccttacgttgtgtgataccttgttacgagtttactttc<br>caaatcttttttgatttagtttagtttgtccgtcagagagtgttatattttaaaaaaaagttaaatgctgcctttcactgcctgttgtgtagcgtactta<br>gattctggaagcaaatatttcttagaggagcattgataatatggccacttcactgttagttttattgttttcatatgagtatgagtgagggtatgaaagc<br>tcacagtagcttcttaaggttccttctgacttaaatgttcattatcttttgatgagtgaatgagcaggaactttgcattctttagaaa<font color="green"><u>CTAGTGTATCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAC</font><font color="green"><u>CTAGTGTATCAC</u></font>tttcttattttgcagttcaaaatataaaatctttgaggatgcttgaatttctagacctttatcatatacttagaggtatattt<br>gctgatagttgtgcattgatactgtgatagcttcttattctcccgtgaagaactgatctgaagtcatggagctttagttacctgctgctcttattccacc<br>ttgcagtggctatcacattcctacaggttttcaacacagcttcccatgaagttccattcactgaaagatatagctggctccattccttacagaaaaaaga<br>aactaatgccctgcttgccaacttttggctgtctagaatggaatgttattctgcacgggaggaagcacgatggaaaagggttcttctacctgcaggaaat<br>ctaat	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	183	NA	intron:GIPC2:NM:017655:1/6
0	chr1	156978671	156978977	1000187	0	+	pAlu1-155489820; Ya5ACA720; RIP_Alu_chr1_155_01	CCCAGAGGCATTGAACATCT	TCTCTGTCACATTCCCACCA	SINE	Alu	Ya5	agcttaacttacttttcaagcaaaagtaataacatttataaatcatacttatagtcttagaaaaacaagacctataaattaaaatgatagacacaaaact<br>tagtactgttgttattcatattaaaaatcattaaagagatacttcactttgaaaatacatgccaaaatgtctttaaataatttcgttaaaaaaagaaaaa<br>gtgcgtggtaattttaaaaaactgatttgttagcattttaaacttaaggagatgatgagatttctttgaagaggtgtgtgtgaactccattagctcccag<br>aggcattgaacatcttttgagaacagaggattttcttggtggcgtttttcatatctttgttcctcagactatagattactgggtt<font color="green"><u>GAAAAGTAGGGCAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAG</font><font color="green"><u>GAAAAGTAGGGCAAG</u></font>gacagcaaacatcagtgcaatggccttgtccagtaatggtgggaatgtgacagagaagcgcagatacatgagtgacac<br>actgccaaaaaacagcaagaaaatagcaatgtgggctgcacatgtggagaaagccttctgacggctctcaccagagggaatcctcaggatcaccgtgatg<br>attcttaaatagaaaagggtgatgacagagacagaggtcagaatggaaatagcacggatcacatcttcaaccagaattatttacgtatctgtgcaggcca<br>actgcagcacaggttcaaagtcacaaaagagttgatgaatttggttggcgccacagaatggaagagtggaaatgcacacaatctctggcagtaacatgag<br>gaagcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	483	161	NA	intergenic
0	chr1	167426661	167426973	1000188	0	-	Ya5ACA733; pAlu1-165855970; RIP_Alu_chr1_165_01	CCTTGATTGCCAACACTGAA	GAAATTGGAGATTTGGGGGT	SINE	Alu	Ya5	cttatttgggacacctagctttgcggagcagatggttttcccagtaaactcttagattctataggtatcacatttcagggtcaagaattacgcatatcct<br>cagtataaactctgtaaagactttttttctcttgtttgatggaactcaaaaatggagcaataatagttatcaacaagcaatgagtctgagtcctcaggct<br>ttaatggcaaccaacaaacccatgctccttattgcagaggaagagtgcattgttgattcgctttatatccccaaatagaaaacacgttaagggtaatcct<br>gggaaattatgcttacttcaaaccttgattgccaacactgaagtgtctaaatagcacttcaccatttttctggttgttttctta<font color="green"><u>GAAACAGTTCACTTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>GAAACAGTTCACTTGC</u></font>ttccttcctgtgataaatgccatatttattttagtatgagtcaacctacactttttttatattgcctctct<br>ccccagacccccaaatctccaatttctcacaagtgaatttaggcaaactaaagaagacatctctgttccgtgagtattaaaatcaaacatttttaaatgt<br>aagttataaaaataacactttcattgttttcttcctaattactaaagtagtccatgtttattacccctattccacctccaaaaaaaaaagaagaaaaatt<br>atggaaaagagtcaagacctaatagactaaaaattttaaaactattcttgtttgcctacttctcagaaataaacactgtaaaataaacattttgacctga<br>cctcaaaccattg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	175	NA	intron:NME7:NM:013330:10/12
0	chr1	184033440	184033749	1000189	0	+	Ya5ACA745; RIP_Alu_chr1_182_01	AAGGTTTTGTTCCTGTCATAATGTT	TGGTCCTAGAAGAAATGCACAA	SINE	Alu	Ya5	taaaagttgtctctttgttttttggttggttgtttttgagactgggtcttgctctgttgcccaggatatagtacagaggcacaaatctcagatcaatgta<br>acctcaaacctctaggcttaagcagtctttctgcctcagctttctgattagctgggacaggtgtgtgctaccatatctggctaattaaaaacaatttatt<br>tttgtagagatgcagtctcactatattgcccaggctggtcttgaactcctggcctcaagcagttctcctaccttggccttccaaagtgctgagattcaaa<br>gctaatattgatatgtaaggttttgttcctgtcataatgttaattgttacctagttgttttatagtctcatttatgcaattgctttat<font color="green"><u>AAGACTTGTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGACTTGTTTT</u></font>atacttttatgttctttttataatggtgggtattgacctttaatttcaatgtttagatttcttttgtgcatttcttct<br>aggaccagtctggtggtgatgagtttctttagcatttactcgtctgggaaagactttacttctccttcatttgtgaagcctagtttagcagaatgcaaca<br>ttcatggtggacagtttttttctttaagaattatggaaataagaccctaatctcttctacctcataaagtgtctgcttagaagtccagtgttagtctgat<br>agagtttcctttataggcaattagatgcttttctcttgctgactttaggctgatgattgtatgtcttgcttaagtacttctttcaatatattttcctgaa<br>gttctttgag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	491	169	NA	intron:HMCN1:NM:031935:1/107
0	chr1	115598423	115598695	1000190	0	+	Ya5ACA974; pAlu1-114896896; RIP_Alu_chr1_115_01	GCCCAGTCTAAGACGTTTTGTT	TGCAGGCACCTCTTTCTTTT	SINE	Alu	Ya5	tacatggactttcaaatacactgattgctatgacctaaatgttgttgttccctcaaaattcatatgttggaacttaatttctaatgtgatagtattaata<br>ggtaaggcttttaggtggtgattaagtgataaaggcagagccccatgaataggattaataccattatgaaagtgagggacactgtttgccctttctgcca<br>tgtaaggacacatagaagtcaccatctatgaggaacaggtccttcccagacaccagatctgctggcaccttgatcttgaacttcctccagaactgtgaac<br>aataaattctgttgtttataagttgcccagtctaagacgttttgttatagcagcaggaacagactaagacattatcatattctatgttt<font color="green"><u>AAAAGAAAGAG<br></u></font><font color="red">GTGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGG<br>CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC<br>ACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAG</u></font>gtgcctgcatgtgtac<br>ttatttaataaatacttttatatagtagacataaattacacatactatatattaatatatggtacaatgtattttatttgaagaatgaaagaacattcct<br>ctgaaaatgatatactgaaaggttcagaataaaactagcaaattattggggattttcagtgaaatgcaagaagacgtagtttgtataaaaaagtagcaga<br>aaattctaaggagacaacaggctgggatgaaaaatcagcaggctgagaaacgaaataaagagcatagaatcaatttggaggggctgagataattttttta<br>attatggaaaattaatatacaatagtggaatttaaatccatattggaaacaataagaagatgattttatagtt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	368	85	NA	intergenic
0	chr1	76872964	76873237	1000191	0	-	Ya5ACA975; RIP_Alu_chr1_076_01	CCAGAGGCAGACCAACATTT	TAAAGCCAGAGGGAAAAGGC	SINE	Alu	Ya5	caaagatgactctcattttgagatcatttccaaatatggatctcttatagagttggatagataactataagctgatttgttaaaagaaaaattatccaaa<br>tttgacattcaactgcaagagtgttgagatttgcagaaagaaaataagaggagagaggaaagtaaggaataaggaaggaagggaggaaagaaggaagact<br>tctttgttctatgcagcttatgtgctaacccaactttgttaatatgtctgacacagcaaaaaaagaaatatatgtcagcatcagatagttaatatggaca<br>aaacaaattccagaggcagaccaacattttctcttgttattgtttatagtagtattctggatatgtttccgacttggatatcaagtatatt<font color="green"><u>AAAAATCCC<br></u></font><font color="red">CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT<br>AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA<br>TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCCC</u></font>ataccgccttttccctc<br>tggctttattaacatatccttacttgtcctgttgtaaaacaaactgaaatatgccaatagctctttgccattttgtaagctttattctaagacacaatgc<br>ttataaataaagcactataatgccataaaaactctcaacaaacgtacaactgtgcatttacactttcttctaaaaatagatgaagattatgggttttaaa<br>atgaatgagaaactacagaaaaaaaatcatgggaactcaggaaaataagtgaagcaaaaaatgtaccatatgtaacagaaatgggtatttactcagtaac<br>agtgacaacaaagctaaacacaaggaaattagtactttgtagattaggtaacaaaaagctataaaattgcctcg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	399	116	NA	intergenic
0	chr2	36809178	36809480	1000192	0	+	Ya5NBC5; RIP_Alu_chr2_036_01	TAGGATATTACTGTACAAAGCCGTAGATTT	GTTTTAAGCTAAGCGTTATTACAAAAGAGT	SINE	Alu	Ya5	atgttggccacactcgtctcaaactcctgacctcaggcgatccacccacccctgcctcccaaagtgctgggattacaggcgtgagccaccacgtccagcc<br>tgtattttctatcctatatttttatcattattttagagtatactccttcacttacttaaaaaaaagttataacatttaaccaaaagattttaaaagtaaa<br>aaattttaaaatctcaaaaatagaaaaaagcttatggaataaggatataaggaaagacaatatttttgtacagctgtaaaatgtgtatgttttaagctaa<br>gcgttattacaaaagagtcaaacagttaaaaaattaaaaagtttataaggtgaaaaagatacagtaagctaagattaatattatatt<font color="green"><u>AAAGAAAAAATAT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAG<br>AAA</font><font color="green"><u>AAAGAAAAAATAT</u></font>tttttataaatttagtgtagatgacgtatacagtggttataaaatctacggctttgtacagtaatatcctaggccttcacactc<br>actcacccctcactcactgactcacccagagcaacttccagtcccgcaagctccattcatgctaagtgtcctctaaaggtgtaccactttttatctttta<br>tactgtatttttactataccttttttatgtttagatatatttcgatacataaatatttatcagttgttaacaattgtttacagtattcagtacagtaaca<br>tgctgtacaggtttttgacctaagaggcaatagaccatatcatacagcctaggtttgtagtagaccatctaggtttgtgtaagtacactctacaatatcg<br>gca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	476	163	NA	intron:VIT:NM:053276:2/16
0	chr2	95723451	95723761	1000193	0	-	Ya5NBC324; RIP_Alu_chr2_095_01	TGTCTCAAGGGTCATCCTCA	TCCCCATCCCTAACTCTTTCTT	SINE	Alu	Ya5	gagtaaatgggttacctttccctggagccttctcaagccactatggcaggagatttccactcaaacccttcatattagaaggttcctgagacacccacat<br>ttcagttctgtggaaagtaccagggtcaaactactggaagacctaggaccccggtcacacaccccacctaccttacacttcctgcactgtcctgggccat<br>ctctccctcctgaggatctccacagatggctcaattccatagggtcttgttgatcttacatcaaccagtgtagaaacttctgtctctctctctccccatc<br>cctaactctttctttcacattttctcattcatactcaccttcctttaaaataattccatgggtcttttttcaaagttaaagagactttt<font color="green"><u>AAGAATCTTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAATCTTAG</u></font>tttgagtctgtgacaaaataggggaaatatcatccctgaggatgacccttgagacagttataaatgactataataaaa<br>taaaaaatttggaataagaagggattcccaactgctactctcctagctaggagtcgaaacaggcccttcacaaagggagcgacagggaggacggcagtga<br>ggggcagtgaggaaagtggggagttgaataagccttgccagattgggaaatgagacccacagggaaacacgactccaatccctcctcagccataaagcct<br>tgttcccacaacctccccagcagcacttcccacacacatgtgtaaacaacagaaagggctccagggagccaggctctgagcaggagtgggagagagagat<br>cagtctgaact	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	486	164	NA	intergenic
0	chr2	213282932	213283222	1000194	0	+	238248; Ya5ACA796; pAlu2-213538608; RIP_Alu_chr2_213_01	TGTCAGTGGAGGTGTTGGAG	CCTTTCCCATTTGCATCAGT	SINE	Alu	Ya5	cttccataacatcctggcaatagtggcaggcagggagatgttcatattactgagcacggttttgacttgatattagaatatatatttatttgctcagctt<br>ttttttttctcatccctaataaagtttaaattaaattgaagattgttgagtttgaaaatacaggaaggagagactgtcatggattacccattgatagagg<br>aatgtccctgaaaggtgacagcaccagaagagttctttctcatgaataaaagaaaaggaaacatggtagttgagatgtaaatatgtctgtcagtggaggt<br>gttggagaaagggacgagaatcttataaaggaatcccagctgataacctctctcttcagtgaagtaggaaataagaatgtgtgtc<font color="green"><u>AAAATAGCAAGGCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAAATAGCA<br>AGGCCC</u></font>agggcctcaaaagaatgaggaaggtcaataaggtctactgatgcaaatgggaaaggaagccgatttgagacattcaaacaggatttagagtgcc<br>accagatcaagtcttcatttagttaaccatttgataaatatattgagtccaacacagtatcaggcactatatttatttccagcatcacaaagacaaccag<br>gcatcaacttgttaaacatccccaggatttgaagtggaggagctgactgtgcaggatccacagtatccaaacatcccagctacctcactttctttcttct<br>agctctggtcagaaataaggctatggcaagtgacctttccttgctcagggcggcttcctatattttatgaaagttccatgccagggatttt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	184	NA	intergenic
0	chr2	115388897	115389198	1000195	0	+	Ya5ACA815; RIP_Alu_chr2_115_01	TGACACCCATAGGCTCCAA	GCAACCTCTGCTCTTTTTGTTT	SINE	Alu	Ya5	gccaaactaagcttcataagcaaaggagaaataaaattctttttgaataagcacatgcttacggaatttattaccaccacctgcccttacaagaagccct<br>taagggagtgctatacatggaaatgaaagaccattacttgtcaccacaaaaagaagtatacagcccactagactataaagctactgtacaataaagtcta<br>cacaacaaccagctagcaacagaaagacaggatcaaatcctcacatatcaacattaaccttaaacccaaatgggctaactgctccacttaaagggcaaag<br>agtggcaaacaggataataaaacaagacccaactgtatgctatcttcaagagacccatctcccatgcaatgacacccataggctccaaat<font color="green"><u>AAAGAAATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTGCACGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAATAAAAAAT<br>AA</font><font color="green"><u>AAAGAAATGG</u></font>agaaatatctatcaagaaaatggaaaacaaaaagagcagaggttgctattcttatttcagacaaaacagactttaagccaaaaatgat<br>caaaaaagacaaagaagagcattacataatgataaagggtttaatttgacaagaagttttaactattctaaatatttgggtacccagctctggagtactc<br>agatttataaaacaagttcttgaagacttagttaactacactgtaacagtaggagacttcaacactccactgacagtgttagatatcatcaggcataaaa<br>tgaataaagacatttaagacctcaatgcaacacttcacaacatggaactaacagacatctacagaacaatccatccaacagtaacataatatacattctc<br>at	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	389	78	NA	intron:DPP10:NM:020868:1/26
0	chr2	240607628	240607934	1000196	0	+	Ya5ACA825; 238271; RIP_Alu_chr2_240_01	GAAGACAGGGTTGAAGAATGC	AGGAGCTGATGTCGTAGCGT	SINE	Alu	Ya5	gaggcctcccctaatcttcctacccagcctctccccacagcctccttcctcagagcagccaccactcacttggggcaagacattcctgtttccacatcga<br>gtcttcatccctctactaaaacacaggcttccctccctgtggcgcccttagctcccagaatgggtctggcacacagcagacatgcactaaatatttaatg<br>aatacgttaacccagttccaatttgccccaagaatactgagatgggagcaagctgcactttttttttctaaatgggaaataggttactatagcaccaaaa<br>aaagcaaggctttatttaacaagtaaaatgtttctttttcattttaagaaatgagtagtcagaagacagggttgaagaatgcttt<font color="green"><u>AAAAAGAACGTGGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAGAACGTGGAG</u></font>taagcctggatgtcagtgtgaagtccacgctacgacatcagctcctggattggctcctggtaaagaacctcaaaccag<br>aaacagcagaccacattgttttcttaggagtaacactaaccaagatcagggtttacgttcatataagaaaaaaagaagcactaataaaatgttttcaact<br>ttttcaaagcaagacaataactccaccaccgtacaactgtgtagatacgtgtcatggacacacactgcatccgtggagacctgaaggagcataggcagcg<br>gctcctagctcagctctgagaagaagcctgtgagccggccactcccagtgaaaaccacattcttgttctcacggctcagaccccatgaagccaaccctag<br>tggcggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	407	85	NA	intron:NDUFA10:NM:004544:3/10
0	chr2	77830293	77830599	1000197	0	+	Ya5ACA839; RIP_Alu_chr2_077_01	TGCGTATGATACACCCTCACT	CTCACACATCATATGGGCAAA	SINE	Alu	Ya5	agggatagcgttaggagaaatacctaatgtaaacgatgagttaatgggtgcagcataccaacatggcacatgcatacctacataacaaatctgcatgttg<br>tgcacatgtaccctagaacttaaagtgtaataataataataataataaaattacagtggttatctttatgtggcaggattatagatgagccttatattct<br>taattttctgcattattcatattttcggtgaagaacatgtattattttcataatcagtaaaataataaaggttattaaaaaacagtaaaaaaaggtatta<br>atgcgtatgatacaccctcactatggagtacaatgaggttagaaggaacaaatttgaaaagtcacagcagatctgattcaaat<font color="green"><u>AAGAGTCCAAAATTCCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGAGTCCAAAATTCCT</u></font>tccttctttttatttaacaagagtgaacaacagaagtatctttttcaaatatcatttgcccatatatgtgtgagtc<br>tgtttctggaatgttcattctgttctactgatctattttacagaactcgacatgctaccacactgccttgtttaccgtgactttataataactattgaca<br>tcacacagtgtgagctctccaactttgttctatgttttcaaagttgtttttgttattctaggtccactgtatttctatatggattttagaattcatcaat<br>taaaaaaatgtatctgctaaaatttttatttggattacattgaacttacagaaaactttggagaaggaacaacttaatattggatcttcttacccatgaa<br>cataata	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	498	174	NA	intergenic
0	chr2	87180173	87180493	1000198	0	+	Ya5ACA855; RIP_Alu_chr2_087_01	CCATGAGTGTGGGTTCTGTCT	AACCTCTATGCACTGAAAGAAAA	SINE	Alu	Ya5	tataacatgaattaatatttgcctcaatttacagcaaaatgaagaccttctaaaattgtaactccatttatttttcccttccaacttccatgctattttt<br>ataatacattttagtatatgctatgactcccaaaaacattgttattgctattattatgctacattgtaaatattcatttaaatttacccactggaataca<br>actttgtgtttcttattacttcctgaatctataaactaccacttaataccatttcatttttgtttcaaaggtaaccatgagtgtgggttctgtcttagtg<br>aattacttcagttttcagtgatctaaaaaggtttttgtattatcttcacttgtgaagttttaactgtatatgggattgaagatt<font color="green"><u>AGAAATTATTTTCTTT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGAAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTATTTTCTTT</u></font>cagtgcatagaggttataattctattgtcttttcacttacattgtttcatttagcaagttaag<br>agtctaaaggtgttcttttaaaggaaacgtgtttttcccctgactgtccatgatatttttctcttttactctatgtttctgcaattcctctctgtgtcat<br>caggttttgaattgctttctgtgtttttctgctttggattcatgtttccctttcaattaatagtttaattcatttagaagcatatcttccttgttcttgc<br>tctactttcttgagcccgtaattatatgtaagacttttcattaacctttgcactctacaatattttctatccttttctttactatgtttgattctacata<br>ttttattctaacatacctgct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	478	141	NA	intergenic
0	chr2	99119413	99119732	1000199	0	+	Ya5ACA862; 1175; pAlu2-99357450; RIP_Alu_chr2_099_01	TCAGAGTAATGCACACAGATGCT	TGCATTAAGTGCTCCAGAAGG	SINE	Alu	Ya5	tatattatttactattattactaattcctctcactgagtcaacttatttaattggctatcaagtcctactgctcttttcactaaaaattatctcagttac<br>atttcttccatccctactatcactgttttagttcatgctttcagactgtagcagtcacatgtattcactttatatgtaaacttataaatagctagaataa<br>gaatgaaccagaaatatgtttctggggataaaaagatgtaaaacaaatagaatcttacaatttcaaccctaaatgaatctaggaaagtccagaacaaata<br>aatcagaaattacaccacagcatgattactgctacatcagagtaatgcacacagatgctaaggtaacactgagaaagaagctac<font color="green"><u>AAAAAAAGTATTTCTG<br></u></font><font color="red">CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAGTATTTCTG</u></font>acttctacttcttcaaaaaagacttaggatctactcttcattccaaaagaactatgaacatatc<br>ccttctggagcacttaatgcattatattacttttatgggatgtccacagccatggctactttaacgtgtctaaaacagacttcctttttttttttttttt<br>tgagacagtcgtgctctgtcacccaggctggagtgcagtggtatgatctcggctcactggaacctccacctcccaggttcaagcaattccctgcctcagc<br>ctcccaagtagctgggattacaggcacctgccaccatgcccagctaactttgtatttttagtagagatggggtttcaccatcttggccaggctggtgtta<br>aactcctgacctcatgatcc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	485	149	NA	intron:TSGA10:NM:182911:1/20
0	chr2	35944027	35944331	1000200	0	+	Ya5ACA866; RIP_Alu_chr2_036_02	GAAAACCACACCAAATTGCAT	CCGCTCTGTAGAAAATGCGT	SINE	Alu	Ya5	ttctagaaataaaatgtttaatacctgaaatgaacctatcactagaaggaattaacagcagctctgacactgcagaaagaaaggttgtgaaattgaagat<br>acccaaagagagcactgagaaaaagaaaagaaagacttttaaaaagaggaatctcagggacttgtgagttaacagtaagccacataacaaacatataatt<br>ggaataccagaaaaaaaggaaagaaaaatatgtttagaaatttaaaattctacagttgtccaaaatttttcaaatttggtgaaaactataaaatcacaag<br>attcaagaaaaatcaaagaacagcagagaacatgaacagaaagaaaaccacaccaaattgcattataaccaaattactgaaaact<font color="green"><u>AGAAATAAAGAGAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAATAAAGAGAAA</u></font>aatcttaaaggcatatggagaaacaaagacgcattttctacagagcggaaaaaaatgaccacagacacatcaaaaactca<br>gtgagccagagtcagtgaaatggaatctttaaaatgatgaaataaaaaacaactgccaactagaatacagtcagtagaaatatcttacaaaaattaagcg<br>atgaagacatttcaaacaaacaaatcagaaagaatgttttgccagcaagtgtgcactaaaataaatgttgaaggaagtgctgcagatacaataaaaatga<br>taccagttggaaaagagataaccaaaaaaagcaccaaaaattataaatataaaagcatctttattttattttttaaaagtatttaaaaataattggtcat<br>ttaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	426	106	NA	intergenic
0	chr2	150335232	150335540	1000201	0	-	Ya5ACA903; RIP_Alu_chr2_150_01	GGAGTGTGTTCTGAGTGAAAG	TAATGCCACATTCATCTGTG	SINE	Alu	Ya5	taaacttcgatctgggatcatatttctcctaccagaaatagaagctttaatatttcctttagttctttaatgtttcctttttatatggcattgataaatt<br>ctcttactcttgtttgactgaaatatatatatttcacccttatccataaaaacattttgtatatgcataaacgtctaagatgtcatgaattttttttcag<br>caatgtaaagatgctccattatattttggcttccataggttctggtaaggagtgtgttctgagtgaaagtcttttgacagtaatctcttttctttttcct<br>ggtttcttgaagttatattatgatgtacctagatgtagctttcttgccatttttactccttatatagtgtttctctgtttgaatcctc<font color="green"><u>AAGAAGCAGACA<br></u></font><font color="red">CTGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAGCAGACA</u></font>ttgtggcacagatgaatgtggcattactttatttgagaagtgcaaacccagggtagtataggtatggaaaacgggaaat<br>gagacaagaaaatatgcaaggaatgtcataaaatgtgttaccatgctgactattacatcaagctgccaagaaacgtggtagctgctcagtagctgagttt<br>actttccggcatacataacttcttaataaggggtgcaagaaggaaccacacctaggaatattccatggaagaaagaacagagctaactctccaaaactgg<br>gtaactgtgttaccttatcccttgatggccattcaggaaaccagacaatgcctgggaatataatctatccagcttgaaactaaggattcgtgtctgttat<br>taatttaga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	178	NA	intergenic
0	chr2	73978999	73979000	1000202	0	+	Ya5ACA917; Ya5-MLS48; RIP_Alu_chr2_074_01	TGGCCTGTTTTCACACCTTT	CCAAAGCAACTTGCACCTTT	SINE	Alu	Ya5	ttttgagggggacaaacattcaaaccatagcaccgcctgtgtgttaaacacccacttaggtgctggggctgtaaaaagtaaatctaggcgtggccctggc<br>acaggagggactccatttcatagagagaaaagaacacagacccttttgttttagggtgcttgctgccaaccgctctggagagacaggctgaagcaaaaac<br>accaaacatggagaagttatgacagttccccaaagtagtgacgaaggcacatctcaggcttgggaagtgtcctcggtgggtgccaggcctgcctttccca<br>gcctcttctcggtgaagagatctctggctaagttctttaccttctctgagatttggaacatactgctgtttcacctaccaaagcaactt<font color="green"><u>GCACCTTTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GCACCTTTTCT</u></font>attgtattaaatatttcagtttctccattgtatggaggcttccagcaattagtttacaagccaacttatttactattca<br>gtaactttttttgatattgagattgttcctaattttgatcattttaaacaaaggtgtgaaaacaggccaaatcttttcattcactcatgaccatttcaca<br>aagatagattcgtagaataagtattttcaaattccctttcagaaaagtagtacaatttaacactcacaagcagtgaatgtgaagccaattctccatacct<br>ttgccagcaagggtggccccaagaaccacacacagtaccccagctaaaggcaaaggtagcttttatcctggccatagcacactgctgatggtcaacaaga<br>caccaagtcc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	500	171	NA	intron:ACTG2:NM:001615:1/9
0	chr2	174798887	174799191	1000203	0	+	Ya5ACA928; RIP_Alu_chr2_174_01	TTTCATCTTTCTAGGCTTCACG	TCCTAGCCATAAATCACAAATCA	SINE	Alu	Ya5	cactccagcctgggcaacaatggcgaaactccctctcaaaaaaaaaagctttctgaggcctcgccagaagccaaacagatgctggtgctgtgtttatatg<br>gcctgcagaaccatgagccaaataaacctattttctttataaattacccagcctcaggtaaccctttacagcaatacaaaatggactaatgcagaagtac<br>agtaagtagcatgcatttgggtagaatggcctaaatttgaagtgagaagctttgagttctatttctggttgacataactataagtgtgaccatgaacaaa<br>ttatttcatctttctaggcttcacgtttctttttatgaggaaactagacaggaagatattcagctctgagattctattttctatt<font color="green"><u>GAAAATGAGCTTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>GAAAATGAGCTTCTC</u></font>aattctgatttgtgatttatggctaggataaggtttaaactattaatacaatatctcaaaaaattaaaacttgagattta<br>attcagggatttctgatgtattacactaatgatctcatgactacttgaacaaaatacttctagaataaaatactactttagaactctcgagactaaaatg<br>atgttaaaaatatttttaatcgctatactgtaatgaacacagactaccaaaaacatttattaatgttctttttttttttggcaggaatttcttttgttct<br>ttttttgagacagttttgctcttgttgcccaggctggagtgtaatggcgccatcttggctcactgcaacctctgcctgccaagttcaagcgattctcctg<br>cctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	445	125	NA	intron:OLA1:NM:001011708:2/10
0	chr2	196444673	196444935	1000204	0	+	8629; Ya5ACA953; RIP_Alu_chr2_196_01	GCTTTGCAATTCTTTTGGCA	TCACTTTGAACCAGTTTCCCTT	SINE	Alu	Ya5	catattaaaattaaaataagggtcttgctctatcacccaggctgaagcgcagtggtgccatcatagctcactgcatcctcaaactcctaacttcaagcaa<br>ttctcccgcctcagcctcctgaagtgctgggattacaggcatgagcctcctctaccacttcttataagaaaatgctcatccacatacctattcccaagag<br>agcttaaatacatttttatatagtttctatgctctcaagaatttgctttgcaattcttttggcatctagtaatactatacaaataagtaatgtaaaaaaa<br>aaaaaccacattcacttcttataaaaacatctccttaaaaagtgttccatttcaaatttatttgaagtcaaactaacaaggatt<font color="green"><u>AAACTACTTAAGGGAA<br></u></font><font color="red">GGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC<br>CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTACTTAAGGGAA</u></font>actggttcaaagtgacaccta<br>ctttgaaatattctataaatcaacagaaattcctaaatctgcatatgggagataaagcattttaaacatcataaaatatctcagtgttaaatatttttaa<br>aatttttctgaacactggccttcaaaatgccaaataactgaatatatttcagcaatataaattgaagaatattctttttacccagttgttggcatggcaa<br>atctttgtttctcacataatcccatttcaataacaggaaaatttacctcatgaacccaaagacgtttaatcacttctgtggtttctgttgtttctggtct<br>tgacaaacaaacaccttgaatgacacgggagaaatcacggaggttgaacaagtagtgagattt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	450	171	NA	intron:DNAH7:NM:018897:40/65
0	chr3	191773343	191773631	1000205	0	-	Ya5NBC51; Ya5NBC345; RIP_Alu_chr3_191_01	ATATTCCAGAAGTTTCCTTACATCTAGTGC	AAAGCTTTAAGTCTCCACCATCTCT	SINE	Alu	Ya5	tagcatttcactaagaatactgcatgcagcgggagggagaaagtcctccaacacttccgattactaattactccattcacaatttccatgatttcaatca<br>acctccaagtaaagctacaccctcctcttagacttgaatatagattggttgggtttctactgtgcctcaagaaatacactgctactagcaaaaacatttc<br>acagctcagtgtcaattgcaaacagcagattgtttctgccttagaacgtataaacttgcaaaagggggtccagagtcttacacttttgcccgccatctct<br>tcttccttcattatcctgaggggcatgcaaagctttaagtctccaccatctctgctgtacactttttttcagaataaaagtatcctgattaa<font color="green"><u>CAAAGCAT<br></u></font><font color="red">TCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC<br>TACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG<br>GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>CAAAGCAT</u></font>taa<br>ccctggacatgctgaccactctcatggctgtaggggcactagatgtaaggaaacttctggaatatttaaggtttctattttctctcaccattttaatata<br>ctcggaaggagggaaagagtaagaatgtaaaataaacaaacaaaaaaacctagaaaacattaactgttcaaaaaggaaaccattcaatgcaaagctcagg<br>aaaaaaaggggggagtatttaaatgtggtattaaaaatggtttagcttctttggtaatctgaaaaaagtatatagccgggtttacatcagatccaggaaa<br>cccgtgtaggaatattttatctctatttttctctttgcattttatgcctctctctctctttttcctactatctctctttttcaaaaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	60	437	140	NA	intron:IL1RAP:NM:134470:3/9
0	chr3	17706705	17707011	1000206	0	-	Ya5ACA1002; RIP_Alu_chr3_017_02	GGGGTTGGAGAACCCTGTTA	AAGGAGTAGATTGTGATGGCCT	SINE	Alu	Ya5	ctagctttacgtactgctggaaagcagtgtccctgtctatctacaatttagtcttataaagcagcagtcccccctttttggcaccagggaccagttttgt<br>ggaagacagtttttccatggatgggggtggagatatggttttcggatgaaactgttccaccttagatcaccaggcattagattctcataaggagcacgca<br>acctagatcgctcacatgtacagttcacaaaagggttagcagtcttatgagaatctaatgccactgctgttctgacaggaggcagagctcaggtggtaat<br>gtgagcaatggggagcagctgtaaatacagatgaagctttgcttgcttgtctgtggccccaggggttggagaaccctgttat<font color="green"><u>AAAATATGGCTATTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATATGGCTATTTTTA</u></font>tgcttcagttctcttatattcttattataatggttatttttccatatttctttggtttgtcattcttgtataggc<br>catcacaatctactccttgttatgttttctagtcttgtttcccactgtttttttgttggccatgttatgacttattaaagcatcatgtattatagcaaca<br>attcttttattcatatccttttatactgattaaatgctatctcttctttttcgctcatactggtccttctagcactgttgacgttttgggctgaataact<br>gattttttgggggggaggggtcctatcctgtttgttgtatgtttaggtatgtttagggatgataggtttaggtatgttcagctgcatccctggccactac<br>tcaccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	457	132	NA	intron:TBC1D5:NM:001134381:1/24
0	chr3	72462417	72462696	1000207	0	+	899; Ya5ACA1020; RIP_Alu_chr3_072_01	AATCGCCTTCACTTTTCTG	CAGCAAGGAAAGAGGTAGAA	SINE	Alu	Ya5	agcagtcaaacaggaccccacacttagaaggaccctatgcttagttaatgctcagctgtcaccgacttgaaattctcaatgattttttaacaggggtccc<br>tgcattctcactttgcactgggccctgcaaatgatgccgcttgtgctgctggagaaccctcctgccctctttgcaagttcctctgatctgcacgctcaac<br>tagtttctcaatttttcttcctcctgttcagaatcaaggggcactttctttgtattgtgttcacagctgagattcaggttctgaagtcacccaggcttgg<br>gttccaatcccagctctgccgctttgtagctgtgcactcccaggaatcgccttcacttttctgagcctgcgtttccttgtctgt<font color="green"><u>AAAAACGAAGACAGTA<br></u></font><font color="red">CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT<br>GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACGAAGACAGTA</u></font>atag<br>tttctacctctttccttgctgcagggatgaaatatgattttttttctgtgtggcaatcactaaccccaggcccaggtacacagtagatactccactgggg<br>ctcagttgttactgcgcgtaaagaaagctaagatgtcaagtcagctgagtggaccccaatgtctagaccaatagcatgtgattcccaaggatccccaaaa<br>gctcagatcctccaagaacaaacccaagaaagccccaggtttcaagctgacgtagggagacagtctttaccttcactctatcatttatcaaatgtgtcca<br>tagctaatgtcacgttcacatgagccctgtgaaactggcattaaaactgccttcattttatagacgcagaagaacgaacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	377	81	NA	intergenic
0	chr3	81428773	81429070	1000208	0	+	Ya5ACA1024; pAlu3-81151601; RIP_Alu_chr3_081_01	GGAAAGGAGCCAGAATAGCC	CAAACATCTCTGGGGAGAGC	SINE	Alu	Ya5	aacacttttatgtacacttctattgaagcacatattcttgccctgtgagtgagaaaaggttaacactttattaacttttgacttctttttttcccttcta<br>aatgtgactgtggaaattggtagtcatgtaggaaatgcaattccagtaccacttgcctagtgagcaaatacggtctgttctgctcccacatgtacacttc<br>tctaacactgattaccttatacataatcaagactagaaaataatggaagttcacatgcaggtttttctagggaaaggagccagaatagccagagtacaat<br>tgtaagtttcatcagaagaggaaaaactccttagttcagctgctatactgatagaagcactttcagctgtacttcacgagagt<font color="green"><u>AAAAATGAGTACCTGTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>GACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAATGAGTACCTGTG</u></font>tgcagggctctccccagagatgtttgctgccagttttgcacagcctccagcttgtggcacgtttctcttgatcctgtgaccccta<br>aatgggagctccgctggctcagagcacaacttgctctgcatcatcccagtacccgcaagccaggatatacaacctattgttctggcaattttaaaaaaat<br>tatcctctgtggccatcaccaatcacactcatctgcctgctttgtcatttgtgttatatttccacatacaaattaatattttatttaaaactttagtaac<br>aaagttaaataggttttgaatccctgcccatttctatttccaataagccgtgttatttttagtgtgcagttttgaagaaaaaaagattatccaataac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	156	NA	intergenic
0	chr3	105030613	105030921	1000209	0	-	18035; Ya5ACA1044; RIP_Alu_chr3_105_01	CCAAAACACAATAGAGGAGCTA	TTCTACCACCCCAAAAATGT	SINE	Alu	Ya5	taaattccctgagataaaattaaattcagcattctgttttctaggttatatattaagaatccttattataattcttctcacttaaatcctaacttattcc<br>aattttctgagccagataaatgtctcttgttcattctaccccatgttgcctatttctaggtcaattcttccttctaaatacagataatataccaaaacac<br>aatagaggagctatggttaaaatcgttcagtctgaagccaaatctctctgagtttgcatttttacagttccactcaatatgacctttaaaaaatacatct<br>ctctggggttttttggtaaaaaaaaagatgactgcatctaatatgtatgattaatgtgaggattaaatgaatattatatatatcgcattt<font color="green"><u>AAGCATTCTC<br></u></font><font color="red">TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGCATTCTC</u></font>agttacatttttggggtggtagaaaagatattggaattgttgttttcttcccacttgccaaattttcttttctttttggaa<br>gatgtattaaagctttcaattaactttaattgacatatttatttaaaattcaacaaattagggtatactgtctaagtactgccaaacactaagtattcag<br>gatacagtagaaaataaatgaacagaagagtacttaaactttctgacttcttaaactttctattttaagaaaaatattggaagaaaatatacaaagttga<br>aaatatacagtatattagagagtgacaagtaatatagaaataaataaataagggaaaatacaggaacagtggtgcattggtcaagaaaagctgttttgtt<br>ttgttgcat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	552	233	NA	intergenic
0	chr3	191438115	191438403	1000210	0	-	pAlu3-191357341; Ya5ACA1048; 10422; RIP_Alu_chr3_191_02	ACCACGGTATGACCCACACT	GCTGATGCTACTGTTGTCACCT	SINE	Alu	Ya5	gttagaccacggtatgacccacactttgttttccgtgagttattaaagatgtcttgagggaagaatgaaagttctgcaacctgtagaggacccataatgc<br>cctaactcattcatttttaatatgtgtctaaataaacccggttaaggagatatatgaattacattactcacttcggggctttataaggttcttgcaaaaa<br>attaacaataatactataatttatcaactctaagacacattttttcacattttaatatctctaaaattagaattcatcttatagtgtcattttatattta<br>attagcaacttttttattttttagtgtacataaaagaatgatgtggttttggatcaatgtcatcttaaatttgattaaaaagcaaaat<font color="green"><u>AAAAAACACAGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA</font><font color="green"><u>AAAAAACACAG<br>G</u></font>tgacaacagtagcatcagcacttctaaccaaagtaggagatcttcatcaagcaccttatgataaggaaacatttatgattgctggagaccaaacatatg<br>ctcccttaaaatatgataataagaaactataataccccacttcaaagtatgcctgtttggcagaagcattattttgagatgattattttgagagactgag<br>gacacagaagaagctctgaaaacacgagtagatgtaacagaaatttatatctatgaagaaatctccatttgtaaaggtgtctccctctctacaagagaga<br>aaaagatgatctaactcaccgatatgcttatattaatagaggtggcaccaacttaaatgtaactttagatttaaatctgccttaattct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	715	413	NA	intergenic
0	chr3	68972906	68973185	1000211	0	+	Ya5ACA1050; RIP_Alu_chr3_068_01	AAGGCTTCCATCTTTCCTCT	AAACCACAGGGACTTAATGC	SINE	Alu	Ya5	tatatagaatatagccatggagaaggaataaagccctggtccctcccatatagaaaaagtacagttccacagctggtttagcagtaaactctcttcatgc<br>atggggaacacttagtgatttgtccttggtagcaccatgtctgccaaagaccacactgggcttactgcgcttgcccatggctagactaaccaaccactct<br>tgcttcagctactattattttctgtaatactgaactaaatggagtttctttctaaccctggacttaccctatctcacattctgtacctctgctaccaata<br>cgatagcactataatctgtgcaaaaatctaacatcattaaaaggcttccatctttcctctacaaggctaaatagaaggtgatattaaag<font color="green"><u>AATAAAATCCA<br></u></font><font color="red">TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAA<br>TACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCA<br>GTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAA</font><font color="green"><u>AATAAAATCCA</u></font>cacacattc<br>tccacaaaacttttaatttgcattaagtccctgtggtttcacaattggctggcactgttcttaccttctttcctgacaggacaaggccacctgacccaca<br>actaaatcacaatgcgtgactatcaccctacacaattcatacactgtcacctccagttgatttactagaggggtttaagaggaactttttttctgatttt<br>tttttaattatactttaagttctgggatgcatgtgcgatctgttacataggtttacacgtgccatggtggtttgctgcacccatgaacccatcatctata<br>ttagatatttctccaatactatccctcccctaccccccaaccccctgacaggcccttgtgtgtgatgttcccctccctgt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	399	108	NA	intron:FAM19A4:NM:001005527:3/7
0	chr3	50038025	50038026	1000212	0	-	Ya5ACA1071; RIP_Alu_chr3_050_01	CTGGGCAACATAGTGACA	TCTGTCTGCCACCTAGAAAT	SINE	Alu	Ya5	tgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttctatactta<br>atttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatatatacag<br>agcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcccaacac<br>tttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctcttaaaaaaaaaaaaaa<font color="green"><u>TTAAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TTAAA</u></font>gttgtatatatataaaaggttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtat<br>atattaacaggaataagtgcatctacctattcgccaagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcaccc<br>aggctggagtgcagtggtgtgatctcagctcactgcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacag<br>gtgcccatcaccacacctggctaatttttgtatttttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcaggtgatctgc<br>ccacctcagt	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	precise insertion position unknown	60	366	75	NA	intron:RBM6:NM:005777:6/21
0	chr9	106440810	106441109	1000213	0	+	Ya5NBC61; RIP_Alu_chr9_104_01	TGAAATAATCCAGTTGGGGAAG	GTATATCTCTACCGAGACTCAGTTTTTAGC	SINE	Alu	Ya5	aggaaacatgacaccaccaaaggaaaacaatatttctccagtggctgaccgcaaaagaaatggaaatatataagctgcctaaaaagaaattcaaaacaat<br>tttcttaaggaaactcagtgagatcaagagaacacagaagacaagtcaatgaaatcaggaaaacagtttgtgatctacatgagaaattcaacaaaaatat<br>agatttaaaaaaaaaaagaaccaaacagaaatctagaagctgaataagtcaatgaataaaataaaaaacctaatttagagcttcaacagcagactagatg<br>aagctgaagaaataatttctgaacctgaagacaggtcttttgaaataatccagttggggaaggggagaaagaatgaaaaaacatg<font color="green"><u>AAAAAAATCCTCCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAATCCTCCTT</u></font>atgggactatggagcgccattaagcaaacaaatactgcattatgagaagaaattgagaaaggcacagaaaggttatttaacaaaat<br>aattgctaaaaactgagtctcggtagagatatacacattcagatctgtaatacatgtatgcaattcaataaatgtgatgcctcatatgaacagaatgaag<br>gacaaaaaactgtgattatgttaattgatgccaaaaatcatttgataaaattttacattccttaataacaaaatctctcaaaagagtcatatacaacaga<br>tgcacagctagtattatgtcgaatgaggacaactgaaagctttccctgtaaggtctgaaacaagataaagatgcccactttcaccaatttcatttaaca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	55	493	180	NA	intergenic
0	chr4	181786435	181786736	1000214	0	-	pAlu4-182133785; Ya5ACA1153; RIP_Alu_chr4_181_01	GGCAGGAGTTAGCCAGGTAG	CCTGGGTTGTCCTTCTGTGT	SINE	Alu	Ya5	atctccctgtacttcactgaatattctggaatgcctaaaagcaaccctaattattaattcatcaatttaatcatttaaaaatatatgtgtacctaagata<br>taccagatctcagtctaggaatataaagaataaaacagtccttacctgaaggtttttagattagagaaaaacagtgacacggaggaagtaattaaaatat<br>gttattagaactgccaccaaatggatatgcacaaggtatcgtggaggtacagtggataattacctaaaccatccttgggtatcagtgaaagcttcttagg<br>ggaatattaccttagagaaattttaaagtttgggcaggagttagccaggtagagcagaactaaagaaaagcactctagatagatattt<font color="green"><u>AAGAAGACACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAAGACACAG</u></font>aaggacaacccaggagtgtttttcaaggttattctacagactacaataaatcacagtaattattaataattgtctcacttacatgg<br>caaaaagtcgtattgtctcatcaatatccattcttctccttctttaaaaatgaaatcccagcattttagctgggcagttggctgaccatctaaagactgt<br>atttcttagtctcccttgcaattaggcatgggaatataactaagtcccagtcagggatatatgagcagaaggaaatttgtaatttatttttattttttga<br>aattttcataaaatctagctcccagaagaatgaatttgtgatttctaaactctgtcttcaaaggaaagtggaatgacttctattctatctttaaagctgt<br>ct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr4	113689438	113689730	1000215	0	+	11642; Ya5ACA1174; RIP_Alu_chr4_113_01	CAGGCCAAAGTTCTTCACAA	TGGCATGCTGCTATAATGTG	SINE	Alu	Ya5	gaacgtatttaccaaagaacttgtaggctaaaattagagagtgagctagtcctaatttaattcctagccatcagaaatcttaggtcatcgtatctccaaa<br>tttttattattcctacatacaaaatggaaatcaacaaatgtaagttacttaagccacaagcccattaacaagaacaaataaaagacatattttgatattc<br>agacggaaagtatcacaatatcaagcatttgttaaacatctaggatgacgcacatattttatcttctagatgaggttagacaacatacattatatcaaca<br>caggccaaagttcttcacaaagaatattaaatatgctaacgaaatattctttgcttaaccttcaagcacattagttttatttattt<font color="green"><u>AAAAATGTAAAGAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAATG<br>TAAAGAT</u></font>gactaattctaaacaacagtaaataaaatgtactcatagcctgtaagtgtatttgaatcttgtaagttacacattatagcagcatgccattac<br>tctcaaggcaaaaagcttcataaaaactgatttttaatctctagaattagatgtaaacaatagggaaatctatgaattttctaattagatgtagtcactg<br>acctagtagcccgctatctatacacacatgtgtacatacacatatacacacgtacacacacatttgtgtacatatacatacgtgtgtataaacacaaaca<br>catacacatacatgtacatatacatatacagtcatgtgccacataacaatgtgatgttttggtcaatgatggaccagatgtatgatgatggtc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	189	NA	intron:LOC91431:NM:001099776:11/17
0	chr4	41782814	41782815	1000216	0	+	Ya5ACA1184;pAlu4-41937980; RIP_Alu_chr4_041_01	TGGCTCTAATGACCAAAAGGA;NA	CCCAGGTGATTCATTCCATC;NA	SINE	Alu	Ya5	atccaaggctcttgtttttaaaaaacatgaggccgggccccaagaatatttgaaagggtttcaaatggaaaataaaacaaggggttggcaagtaaccgct<br>tcttgatgaataaggtttttccaggatttttttttttcgccccacggaactttgtattttccgtgattcacaatgtttggcgtgttctatatcacaaaag<br>cagtcttggcttaacgacccccatgaacaaacttaggaatgtgatactacttattgtactgtttatagtatgtctatttacctattgatcttactttttt<br>tcttaagcaactatttctctcattagtatgctatagtgaaaaagtttgcaaatgttttcattggctctaatgaccaaaaggaat<font color="green"><u>AAAAAGAAACAAGATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGAAACAAGATT</u></font>ttattttgctacaaataatgtggtggtgatttttctttccagaaacgaaatcctgaagttcgacatgtagatttggagatact<br>gtgagtttgatggaatgaatcacctgggtggggaccttggaaacaagtttgtccgtccactctacaaagtttcctcctctcctacactgaaagactcagt<br>gccatgcagaagccttttttttaagatgaaggaaatattttatgtaaagagcaactcagcaggacacagaactaaaactactacttacatctaacagaca<br>cactacaagttgaatcaatttgaaaatcatgtttttatgcttccatagggaacattttggttatttaaattgttcataatgtcccatatttcacctgttc<br>a	Other;Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	55;NA	467;NA	150;NA	NA;NA	intron:SLC30A9:NM:006345:17/18
0	chr4	138163290	138163582	1000217	0	-	Ya5ACA1257; RIP_Alu_chr4_138_01	AAATACCAGTAACGGTGTTGAGC	AATCTTGCTAAATTAAAGCAGAAAA	SINE	Alu	Ya5	tagtagtcagatatagtgttttaattaaacatcagatattcgttgaatagtttccacaagctccgttttgttttgataaagcatggacattgaattagga<br>aataagtttgaattttattcttgctcctcgctcagtaaccaatttgggggaagcttcttagaagtcttttagattcagtctttttttttctttttggaat<br>gtaaaacatcggaacatctaattcataggatttttttttataaataaatgaaataaattgtgtaaaataccagtaacggtgttgagcttaagaaaatttt<br>tattctgaactttgggaggccgaggtgggtggatcacgaggtcaggagatccagaccatcctggctaacacggtgaaactctgtctgtatt<font color="green"><u>AAAAAAATA<br></u></font><font color="red">CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGTGAACCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCATTAAAAA</font><font color="green"><u>AAAAAAA<br>AA</u></font>gttttttctgctttaatttagcaagatttagaaggatattaatattaataatttatttgacttttacacaaattgtaggaaactttgtattgtaatta<br>aaatccacaagagaaataactcattgattagtaccaagaaattcatttgggacttgtcttttcctgaatgacttaaatgtgttcatttgattggcaccat<br>gactaacccaaaatcaagagtgacagcaggccaatagggagaaacaagatggcaagtgcctgcacagaatggaagctgcagacccggatgtaaactagta<br>agaataaactagactaatgagttgctgaagtctgactgtgacctggtgtgagagtgagaagcccataacggctagagatacagggagaggttc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	466	155	NA	intergenic
0	chr5	12239501	12239791	1000218	0	-	Ya5NBC123; RIP_Alu_chr5_012_01	ATCAAGTTGACACTCAGTATTCACCAC	CTAGTCTGCAGAACTGTGAGAAATGTA	SINE	Alu	Ya5	ttatgcagaatgtttagtttcagacaaacattgctgaaatgatgggatgaacattaaaactgcttttatgtactaaataacaattttgtaatgttataga<br>tcatctcatttataatcagtacaaattcatcttctctataatttccataaatgcagtacatcaatttatgtgtatttaaagttaaaattaaattgtatgt<br>tgtttcaacatcaacaacctaaaaatgcaagtatttttaaaaatctagttgtattgaagtattatcaatccaatcaagttgacactcagtattcaccacg<br>acaagccgcttccacatttgtaggcattttgttacagcagcattccacttctcactactaatttctgtttagttcattcttactgca<font color="green"><u>AGAACAAAATACT<br></u></font><font color="red">TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA<br>GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AGAACAAAA<br>TACT</u></font>acagaccgggtaatttataaataatggaaatacatttctcacagttctgcagactagggaagacctggatcaaggtgctatcagattcagtgttga<br>gtgaggactcgctctctgcttccaagatggtggcttgttgctgagttctacaaaggataagggtccaaacattgtgtcctcacattgccgatgagatgca<br>tgggccaaactgctctctgaagcatcttttaaagtcattaattccattcatgaggccagaatcctcatgacttcatcacttccccaaaggccctacctca<br>ataccaccacagtagggattaagttttaacatgaatattggaggggcacattaaaccatagcagtgctctttgttgaattttgtcaagtat	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	490	180	NA	intergenic
0	chr5	71952318	71952608	1000219	0	-	Ya5NBC311; RIP_Alu_chr5_071_01	TCTTGGCAAGGAGATGTGAA	AATCACATCCGAGGGTGTCT	SINE	Alu	Ya5	ttctttcttttttgaacatctgttctacatgtgaccatattcactttttctgtagttttccccatttttcaaaattcttgaaagatcagtgacagtggtt<br>ggatgctttcattgtacaggttctttttgtatcttgaaaggtatttttttcttggcaaggagatgtgaacatatttaggaaattaccatatcttttgaaa<br>cttttccaggctaagtaacaattttattttacaaagaagacaaaaataaaatgaaagttaagtgattctgtagggcctttcacttgatgatctgcatttt<br>attccatttccctttaaactattgaaatgcctttgttctatcagtaaagtgttatatcattatgtctcagtattggatctgctttta<font color="green"><u>AAACTGGTGTTCC<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC<br>GTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA<br>GGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTGGTG<br>TTCC</u></font>aaggtgtgtagacaccctcggatgtgattttttaaaatgagataaaatcatgggacacattactaatatcctagaaaaacaaaaacattaggagat<br>agaccccatactatactggatatttataaactttaacatacagcacaaataagatgattggagagaatagagcttcttcaatttttctgtacttaatggc<br>ttgacaaataatattaatagctaatttgatttttctatcacgcccttacaccactaaacttgagtctgatacaataacttaaatggtctctgtgggcaat<br>gcatcatttgaataaaaacagtctctggaggttgctttcatcttccaggaaggttacttcttccctaagatgtcatccaatatgggggttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	584	279	NA	intergenic
0	chr5	21687341	21687648	1000220	0	-	6000; Ya5ACA1320; RIP_Alu_chr5_021_01	TGCCCTTGTATTCTTACAGCC	GATTGGTGGCTCCATCATGT	SINE	Alu	Ya5	attcgtgtgtgtgtgtgtttgcaagagagatttttttcaagatattttctcaatattgaaaaaattggaccacttttttttagcccattcatttatattt<br>tctagaaattagaacctagtctgtcattttgggttcagttactttcctagacttatcatttgcatttacaatttaaagacttctaaaaactgcagtagtt<br>gttctggttggttttacactttgacatcatcatctagttgtcaacattgttatgtaataaagtttatcaatgtttacattaattagtgcttacagttttt<br>taattttcattttttgaaaaacatcatactgtgaggttatttatttttaaatgcccttgtattcttacagccatgaagtttaatt<font color="green"><u>AAAAAAAATTATTTT<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGAGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAAAAATTATTTT</u></font>taccctgggaattactttgaggaaagaaagtggtagatttacagttttatttatcaatgtgatagttctgggactca<br>tatgtattgtacatgatggagccaccaatctcatacttaacatgtagctaaccacatttcacttaactaaaaatgtaagtgatggtaggttaagaacata<br>catgctattattaagctttaactgaattatgatttttatctttaccttatcaatttactagaaaagtttgttttctaaaatcatattaattgatcattat<br>tctttttttaattctatatttcaatgctttattatgtatttacaaatggcattttttttcagtaccagaataatttttttccacagctcatcagatattc<br>tgaattct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	479	156	NA	intergenic
0	chr5	82941832	82942134	1000221	0	-	Ya5ACA1352; Ya5-MLS06; RIP_Alu_chr5_082_01	TTGGGGAAATTGCTCTGTTC	AATGCTGGATGAAGAGCAGG	SINE	Alu	Ya5	gattcagactagcacagcttcagctgattccttgaggagtcctggagttcaaatggcccttcagagtagtcccacattgtggtgaaatgagtctgagcct<br>ttatatagcagtcagtcattggatgtgggctgccctaggaaggatgtgtccttgggcaagatgtgaacacctggagcacaatcacttcctcaagggatga<br>cacctaaagaccatcttctgagcacttccaataagagccatttcatgtcaatcacatatgtctccttgtcttggggaaattgctctgttcttttggacac<br>ttgtccaggtacacagtgctgtgcctgtactcgaataatctgtgcaccaccaccttgccagcccatgccaactctgcttccttt<font color="green"><u>AGAATCCTCCAGTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAATCCTCCAGTCAG</u></font>ggagagccctgctcttcatccagcatttttcatgtttgtaggcaccaagaagatgcttatcatgaagtattgtttatcctg<br>gagtatatcatagctgtcctgaagggcttaattcttttcactttttgtcctgctcaccattctagagaaaacagctatttcctctcattcatccatattc<br>ttgatttcttcaacatttgttcccagtataaaagcaagttctctacctgaggactattggtacatacactaatatggtcacatttagtttttggatattc<br>atagttttttttgttttttgttttttgtttttgagatggagtcacgcactgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacctcc<br>acc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	476	157	NA	intergenic
0	chr5	88078911	88079222	1000222	0	-	6653; Ya5ACA1355; RIP_Alu_chr5_088_01	GGGTGGTCACAAAGACCAAG	TAGGCCATGTTTTCCTCCAC	SINE	Alu	Ya5	cacagtgattagcaaacaagatgaataacactagcttcctattttatatatcttttgaaaattaggtcgagccaaattagtgtgtaaactcacgtagtat<br>tttgctggacatggaaatgaaattttttccctcaaaaaatactttgtggtttgtagcctcaaaatgagagaaccagatcaaatccagaccaatgtttctt<br>ggatccaagtctctaccaaacactatgattagaaagaatggtgaggactgagaattgggtggtcacaaagaccaagatataatataagaaaaatggttta<br>gatgttatgatgttttacccaatatctcactgcaccgatttgcttgccattatggaaacagctagtagtggttctgaaagtcatt<font color="green"><u>AAAAGTAGTAAAAAA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAAGTAGTAAAAAA</u></font>aaaaaaaatgtggaggaaaacatggcctactcagctttgatggaagtggcttgttactgcttaatagctagaa<br>tgctttggaatcctatattgaaaataaaaagtgtttggttgttcaattattctgtcattgtcaattcccagacagttggctaagtttaatgatcctctag<br>ggatagagaagactctcaatcctgtaggcataaaagtttgacacacgtaggatatagtaacattgaactaacaaaatcttatgcacttagcaaattcatc<br>ctcttacctcaggacctctaccataggtatgagaatcttctaattcagaaatagaagaaaaccaaaagaaagatactgaattactccaccctggtgataa<br>taaatattatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	500	163	NA	intron:MEF2C:NM:002397:6/11
0	chr5	103090216	103090521	1000223	0	+	Ya5ACA1368; 3715; RIP_Alu_chr5_103_01	TGTCAGAGGCTAACAAAATGA	GACACAGTGTTCACATCTATCTCT	SINE	Alu	Ya5	gaattctggtagaaattgaactatcagatgctgggttggaccagattaaatttaaggccctctcttgccttgatattctgtgaattacctttcagtaact<br>cacaaatttatggtgcccttcatgtcccaccatatggactgtcatctattccactctgtagccatgactctcttgtggagcctctctttcatcccctaat<br>tagtgatacacaagagagaatgggtgaagtactcatttaccatcttacctgcttcctaacaaatccacagccaaggggatgtgctctgcacaatcagagg<br>tttgtcctggcagatgggtaggcttgattacgtatgtccacatactattctttgttgtcagaggctaacaaaatgatgacatggat<font color="green"><u>AAAATGTGTGTGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAATGTGTGTGTG</u></font>tgtgtgtgtgtatgtgtttcctactctgtagccttatagtctacataaaagagagaacagtgtacttttccatgtataaa<br>gaaagtagcaaaaaaaaaaaaaataaggtagagatagatgtgaacactgtgtcacatcccattgttaaatgtattcagaaggtctggggtgaagatggtt<br>cagtgcacctcttctggttatacctgggcacgaaagctggcagaagcagatttgactcaggactagcagttctctaggactaaatggatatgggaacaac<br>agggtcttgagaactcaagttgaatgtcaatttctgtcacaaatctgacacatactcaaagatttcattacagtcaaagagcagtactggtggggcattt<br>aatagg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	498	178	NA	intergenic
0	chr5	142915574	142915871	1000224	0	+	Ya5ACA1410; RIP_Alu_chr5_142_01	ACCAAGCCTCCTTCTATGGT	CTCCTTTTCCTGCTGCATGT	SINE	Alu	Ya5	aggcaaagtgcaaggttgtccattgcatcatgatagcaatattgaaaagctgaaaaacaatctaagtgtccatcaaaaggaggcttgctaaaataattat<br>catataacttaacaatggaatgtcagtaacccattcaacagagtgaagtagtgtaacgttcagtatttcattgtacaataaacaatgatttttttaagtg<br>aaaagtttattgcttttaaaacaccttttattttaaaatatttgtgtactcactagatgttaaaaaataatacaataatcctacgtatcttttaccaagc<br>ctccttctatggtacatttaaaatatatcttaaagaaaaatataataggttgcagaatggaaaatatggtaggatcctatttatgt<font color="green"><u>AAAAATAAAAGTAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCGGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATA</font><font color="green"><u>AA<br>AAATAAAAGTAT</u></font>accaaactgttgacactggatatctctgtggaatggaaaataacatgcagcaggaaaaggaggaaaatgagagattttaatttttttc<br>aagactgagtctctctctgtcacccaggctggagtgcagttgcgcgatctcagctcactgtaacctccacctcccgggttcaagtggttctcctgcttca<br>gcctcctgagtagctgggactacaggcacacaccaccacacttggctaattttttgtatttttagtggagacggggtgtcaccatgttggtcaggctggt<br>ctcgaactcctgacctcgtgatccgcccctcttggcctcccaaagtgctgggactacagatgtgagccaccatgcccagccttaattttcttaattta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	481	169	NA	intergenic
0	chr6	26005979	26006279	1000225	0	+	NBC212; Ya5NBC132; RIP_Alu_chr6_026_01	CTCGTGATTCACAGAAGTGTTGTAAG	CGGGGTTCATCCTTAATACATACAT	SINE	Alu	Ya5	agagtaagacagagaggggttcattttttattttattttattttttattttttgagacgttgtctcaccctgtcgcccaggctggagtgcagtggtgcag<br>tcttggctcactgcaatccccacgtcccaggttcaaacgattctcctgcctcagtctcccaagcagctgggattacaggtgcctgccaccatgcccagct<br>aatttttgtatttttagtagagacagggtttcgccgtgttggccaggctggtctcgaactcctgacctcaagtgatctacccgcctcggcctcccaaagt<br>gctgggattacaggtgtgagccactgcgcccagccggggttcatccttaatacatacattagagatatagattctgtttttatct<font color="green"><u>AAAAAGTCTTTATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAGTCTTTATAA</u></font>aaatctgattgaatggttgaatgctgtgctaaaatctgcataatatcttacaacacttctgtgaatcacgagacagtttt<br>gaatgctaaatgtcagttaacagatctaaagggaccaacatctgctttcccaaattatatgaaagaagatcctgatccctcatcaggtgaaactcacatc<br>agacaacagtgtctgcatttctccaaaacccgcctcagccccatggccactttccagggttatcctgcctaccaagcactctctttcctcagaaaaactt<br>gggggaaaatgtagaataataattttttgaagttctgaccaacttcttgaatcactcagcatgtttttgactgcaggtacagaaaacgctgactcaacaa<br>attta	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	458	228	NA	intergenic
0	chr6	50560438	50560754	1000226	0	-	Ya5NBC327; RIP_Alu_chr6_050_01	AGGCAGGTTCAATGTTCAAA	TTGTCTTATTGTGCTGGCTAGA	SINE	Alu	Ya5	cactctatttagatctttgtcatagatttcttccatcaaaattttgtagctttcagcatacaactgtgtatatgttttattcaatttatcactgtgttta<br>atattttgagtgattgtaaatggcactgtatttttagtttgctgtccacatgttgattgctgctatatagaaatgtaattgatttttgtacatttatttt<br>atatcctgtgacattgtttaactcatttattagttctggggatattttcatagatgccttgatattttatatttagacaatgatgtcatgtacaaacagg<br>gatagttttatttttccttctttaatctgtttacctttttttttcttgtcttattgtgctggctagaacttctggcaatatgttgaat<font color="green"><u>AAGAATAATGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAATGAG</u></font>aatgggtatccttgagttattacaaaccttagggagaaataattcagtttttcaacattaagtatgatgtt<br>aattgtagatttgttgtagattcttcttatcgagttgaataatttcccttttactcgtattttctgagagtttttttttaaaatataaattgggtttttt<br>ttgccccctttttctttttgtttttctgcgtggattcatataatcatgtgatttttgttaccctgttagtatggtggactacattaattgatttttgaac<br>attgaacctgcctggaatccttagaataaagtgcacttggtcataatgtatggtttttaaaagtgtattgctgaattctatttggtaatattctgctaaa<br>aactttatatttacatt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	668	339	NA	intergenic
0	chr6	129778783	129779077	1000227	0	-	Ya5-MLS19; 2128; Ya5ACA1492; RIP_Alu_chr6_129_01	GGGAGATTGGTGGGGAATAA	GGTGGTGTGGCTAGGAAAGA	SINE	Alu	Ya5	accccaaggatcctgtgacatcagaacttcccttatacaagcccccacatgctggggctgtgcagtctgtgtagggcccaaagggtctggctctgggcga<br>tggaactggccagggaatggctcaccatgctgtgtgccctgacatatctggcccagtggttacataactcccaccaagactgcatgaggctcccaagcat<br>atctttcccatggagaaagcaaaatatacagtaagaaaacaaacagctcttcagaaatacagattaattaatttaaaatttgaattctgagaatagtacc<br>aagagactaagtaaaatggagtgactgtccgggggagattggtggggaataaaactatgacggagtaaaaagaagttgatc<font color="green"><u>AAAGAAAGTGTATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC<br>GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG<br>GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCNTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>AAAGA<br>AAGTGTATAATTTC</u></font>agcaaagaaagcttccctttggacagggttggcactctttcctagccacaccaccatgggccttttattttcttttttgtgagata<br>aggtcttgctctgtcacgcaggctggagtgcagtggcatgatcttggctcactgcagccttgacttcccaggctcaggggatcctcccacctcagcctcc<br>tgagtagcctggattacaggcatgtgtcaccatgcctggctaatttttgtatttttagtagagatggggtttcgccatgttgtccaggctggtctcaaac<br>tcctgggctcaagcaatcttcccacctcagcctcccaaagtgctgggattaccggcatgagtcactgcacccagccaccatggttatttagatag	UCSC	<UL><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	437	123	NA	intron:LAMA2:NM:001079823:40/64
0	chr6	138989442	138989748	1000228	0	+	Ya5ACA1504; RIP_Alu_chr6_138_01	TTCGAGCCCATGGTAAGTTC	TGCAGCAGAATTTTAGACTTTCA	SINE	Alu	Ya5	aacaaccatccagtcctgcctgatcagtccacttgcttgaattctaaaacctcacttagcttttggaaacaaactctttaggtagaatgttaatacagga<br>gtctcttccctcgcaaagcaaaatcttgaaagagccacagacattttctcactgttaacagtggtagataggttgattatgtagtccataaattttacta<br>aatcatcagacacacttgacttttctctgtgacggcatagctttaagtaaatattaagaaggcatttgcatccattaaaacacagaatttaaaaagtaaa<br>aacacctcttcgagcccatggtaagttctacattttccagattctcagcattagcaaatattgtttatataatcaagaaactttctt<font color="green"><u>AAAAAAAATTGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAAAAAATTGTA</u></font>actaccactataagcaatcaagactaaacaaaaacattactgtatatcatatacaccttcttattgaaagtctaaaattc<br>tgctgcacataaaacacctaaaacaatttagaacatttgccatttctttctattctaagggaaataataggattaatgagatgttgatgagaaattgtct<br>tctctatgcaacactgctctctgcaaaaataccaaactatgtcaaacctgttcccaaaaggaagaggattaaattctacacctagaaaattaaattctca<br>agctacctaccacacagtctgtcaatttatataggttactataatcaagaaaccactgcttttggtctatgttttaaggatgaataattaatacacaaaa<br>agttttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	499	179	NA	intergenic
0	chr6	20873358	20873665	1000229	0	-	3176; Ya5ACA1572; RIP_Alu_chr6_020_01	CGTGGGGAAACTAAAGGAGA	TAACTTGCATTTCCCATTGC	SINE	Alu	Ya5	tgataatttggccaatacagttataaagttacagaaatacagacaagacaacacatgctggcttctcttacaaagtcctttctggtattattccaaacca<br>aggtatagaatgaagtgatgtaaaaaaatcaactaaaagtcttatcatacaatgtttttgtttggggccataaagaaattagcctactcttatttttaag<br>aaaatgttatggtttgaaaaatgctatctaagagagagagaatgaataacaaggagttcatcctagaaataatgtatgtagatgtacagaatacaaataa<br>gtaaagctgcaatcctattgttaacgtggggaaactaaaggagatataaagaaaagaggatagcaaaacagataaactgagtgcattt<font color="green"><u>AAGAATGTAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAATGTAACC</u></font>attacctttgcaatgggaaatgcaagttaccaaactgtaatcaaatagtaaagttaactttactatactcataaacttaa<br>aacaaacaggctcattgaaaaaaactaaataaagtaataaatccctggctcctttactcactagaaggtagaagttatcatgtatttacttacaccgatg<br>agactggaaagtattcctaacatgtaaggcaatccacaaactttttcccactacattcagactatactaactgtatcagagattacatataatgagagga<br>tgcatacaagtgttctttcaaagcacatattaaaaatcaataaaaattattttattgaaatgcaactattgaaaaagcagatgtgcttttgtggtccaat<br>accctccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CDKAL1:NM:017774:7/16
0	chr6	157877845	157878137	1000230	0	-	Ya5ACA1579; RIP_Alu_chr6_157_01	GAACTGTTTTCTGGGCGCTA	TGGGATGTCAGTGTCTGTTTG	SINE	Alu	Ya5	aaaagaaattagctaatttagcaccggatactaaaatgatgagaagcctttacagaactctccctccaatcatatacatcagcaagagctgtttgatttt<br>ggatatgatgataaatacctatgcacaaactgccaaagcattgtacattagaggtacagaaattcattccaggtaataattagaaatgtagcactgccaa<br>aagattatatggaatttttttcagttcaaatagcaatctctttgaatctttagtaaaaattgtttttgtgcattgatgtttatacatgaaaaatggaact<br>gttttctgggcgctatattatctgagaccacacaatcagagtgcatccttcctctgctcagaactaaatatttgatattggtcatt<font color="green"><u>AAAAAGATAGATGG<br></u></font><font color="red">AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAAAAGA<br>TAGATGG</u></font>agggatagatagacagacagacaggcagacagatagatagatataaaatcattttagcatcaaacagacactgacatcccagaatcaatactg<br>tcattaattctatattcatgtttagagactggcttacaggttagaatttgacataatgctgattccttgaacaaaacccctaagactaaattaatttctt<br>aaacatttggataagaaacatggatttcattattgggtaattaggtcactctgttttccagaggacattctttgggagaagattaacttaaaaactaaac<br>aaaacaaaagaacaatattaacaagatatagcagagacattaaaaccaagtgccctttggaacaagaagtagagaatcttttcctgtatcaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	186	NA	intron:ZDHHC14:NM:024630:1/9
0	chr7	86555240	86555541	1000231	0	+	Ya5NBC22; RIP_Alu_chr7_086_01	TCTGTGTTCTTTGAATGTGTATTACTCTTA	GAATGTAAAGCTGTAACTTTCCTTTTCAAT	SINE	Alu	Ya5	atatctcttcaggaacctgatttcaattcttttggataaatacccagatctaggaatcttagatgatatggtagttccatttttaattatggggggaatc<br>tccatactgttttgcatagcatcatagcacctacaccagtttgcatttgcactaaccatgtgcaagcgttccagtttctccatatcctcctcaacacctg<br>ttatcttttgtgagattttttaaaataatgaccatactaatgggtatgaggcaatatctccttgtggttttgatttgcatttctctggtgattagtggca<br>ttaatattttttcatatatgtgttgttcatttgtctgtgttctttgaatgtgtattactcttaaatctgacaaattaatagaccttt<font color="green"><u>AAAAATTAAGGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAATTAAGGTC</u></font>ttccttcactaattttttttagtgcaggaatggtttttataacatagtgaatgttaacaattgaaaaggaaagttacagctttac<br>attcaaaaaaagaacttctttttttgctttcatgatttttagttgacacataataattgtacatatttttaggtacagtgtgatattttgatacatgtgt<br>ataacgcataatgatcaaatcagggtagttagcatatccatcactttaaacatttatcacttatttatgttgggaacattcaaaatctactcttctagct<br>atttgaaaatatacaataaattgtttataattatagccaatctattgtgcttcctcctatctagctggacttttgtatctgttaatcgacctttggctac<br>tc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	471	156	NA	intergenic
0	chr7	143677191	143677510	1000232	0	-	Ya5NBC35; RIP_Alu_chr7_143_01	GAGAAGTACTCAGAGAGGACATCATTT	GTAGTCATGGAGGTAAGAAAAGAAGACAC	SINE	Alu	Ya5	aaaacaggtagtgccgatcaaaccaggcaagctgaagcccatggctcctggacacaaatgatgacagctgtgactaaactcctaggcaaggctctttgat<br>gtgtctatctggccaataggcctctacatcttgaaagcaaagtagcaacattgagaaaaaaaagggccaggctgtgaaatgcaagttcaaagcaagcagc<br>aaagtattaatagttgagcttctttctgcaaataaaacacagagctctagaggcagcccctgcaaaatcaagagcagaactcctcaaggagtcctctcac<br>aaacagagaagtactcagagaggacatcattttattcacctccaacagtcaattcttcaaatctgacttgatcattttatcttc<font color="green"><u>AAAAAACAGTCAGCAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTAAAAAAAAAAAATAAAAAA<br>AATAAATAAATAAATAAATA</font><font color="green"><u>AAAAAACAGTCAGCAC</u></font>aatactaaaatccattccctgtcttattttcccattgcccctgcattcgttcaaggtgtcttct<br>tttcttacctccatgactacaatatccatctaattgctacaacagctgattgccttccttgcccctccacttcactatccacaccagtccattctctcaa<br>ctgcccccagagcttttttttctaaatctaaccttagaatctgatctcatcatgaccttgcttgaaacccttccaaggaggcctatccccagaaggatga<br>agtccaaactcagtagcaggaatggcctacaaggcctttcatgatttggctgcccgactacccttccaacttcattctctgccatttcttcaccacatct<br>catgttaaacccacactatt	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	515	179	NA	intergenic
0	chr7	78195798	78196116	1000233	0	-	Ya5NBC96; 55662; Ya5_451; RIP_Alu_chr7_078_01	GCCATCAAACACTCTTGACCT	GGAGCTATGCCACAGAAAGG	SINE	Alu	Ya5	tcttaactttaaaatgactgggagtaatcctcactttttttcttgttcttaacttgtatcccagtggtttggatattggcactaaaccaatgtgccttca<br>aattcagacattcctatttttaatcacaagatcttgagtgagtaaaatatctaacacattgtaaagacttaagtcatatgatcattatcatagatatagc<br>ctaataccattacaagtggctgatatccacatgattacaaaactctgcatctatagtatgccctcatttcttaccccttttcagtgagcagaagcctaag<br>aactagttgtaccctgtgagaaaatattaggagctatgccacagaaaggaagagtaagatgaatcattttttcagatat<font color="green"><u>AAAAAGATCAGAGAAAGATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAGGCGGAGCTTGCACTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGATCAGAGAAAGATGG</u></font>acataccaattttgaaatctttaattcaaactttgatggtactaggtcaagagtgtttga<br>tggctctatctcatctatgtgaatagaattcccagctagaatttgagttccatagagtaagaaccaatgtgcattttgtttactgctaattcatgcgggt<br>atagcatatgatagatcattttttaaaaagctttttaatgaaagggtgaatacctgatgacaaattcttaaaattgggctgtttatataataatctataa<br>tctaaaataaagatccttcttatttttctacgatttactttgtatttaatatctcagttatcatcacccactgttaccataacctcgcagggaatgaaca<br>tccttaatgcagattattc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	509	169	NA	intron:MAGI2:NM:012301:2/22
0	chr7	43380646	43380938	1000234	0	+	Ya5NBC182; RIP_Alu_chr7_043_01	GAAGGACTATGTAGTTGCAGAAGC	AACCCAGTGGAAACAGAAGATG	SINE	Alu	Ya5	gtttcattctttgcattgaaataagttatcactcatttcatataaaaagtattctggggttcaaataaaaagaaacactacgaaaattcatagaggttgg<br>ctccttttgaaataaattcaatgtaaagaaattctagaaaattacacctgttctctacatgattcaagagaacattgtatctttgaaacttcctgagaga<br>gcaaagaatggtaagaaggacagtaaggagataatgggtccaaccttttgaccaacagtcacaggtatgtgacttagagaccacgggaaaaggaattact<br>gaattagaagacaaactaaaacaaaatcatccccaacccagtggaaacagaagatgaaaatagaactttttaaaacccagaaatctaatttatgaac<font color="green"><u>AAC<br></u></font><font color="red">AGATGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA<br>AAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGCGGAGCTTGCAGTGAGC<br>CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAGAAATATAAT</font><font color="green"><u>AAC</u></font>cagt<br>gaaaaaaagatgaaaatattttttatctaaaaaaatacatacctaattaaaattgaaattcttcatatttcagatagctggaattgatataataaaatat<br>atatgtaggttcatagtagaaaatttgtagacacataaataagaaaaaacaataataatccaatacacagcaagcttctgcaactacatagtccttctta<br>ccattcattgctctaataaagttttaaaaataaaatgttcttttgaatcatgttaagaacattgtgaaatttcctaaaatttccttcagtttcttgcatt<br>gaatttactccaaaaggagccaaggggttcctggaggaagaatttttgaactgaagaatgctataaacaaacaggagaaactgtcggacgcct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	563	287	NA	intron:HECW1:NM:015052:6/30
0	chr7	96732684	96732909	1000235	0	+	Ya5ACA1727; Ya5NBC201; RIP_Alu_chr7_096_01	CGCCACTTTCCCCAGTTA	CACCTCCCTAAAAAGCAGGA	SINE	Alu	Ya5	ttgtgaaaaaatatttgtaatatatatgatggaaaaagaggttagtagacataatttacaaaaagctgctgtaaatcaatatgagaaagataacccaatg<br>gagaagtgaacaagtgctatgaaaaagcaattaatcataagagaaaacccagaggttaataaacatgagatgtttcacctccctaaaaagcaggaaaatg<br>caaattaaagtaatatacatgtatcacttcttgttcatcacaatggcaaaaattaacaagaatgagaacctagttctggcatttctttattcatgcattc<br>ttctatttaacacatatttattaagtgccttacatgagccaggcatgattccaggtgttgaggatacagcagtgaacaagagac<font color="green"><u>AAAAACCTCAGTCCTT<br></u></font><font color="red">GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT<br>GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT<br>CCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACCTCAGTCCTT</u></font>atggagcttgcagttaactggggaaagtggcgaagaaggtactcatattgctaatgaa<br>aataggaagtgttatagccttttggaaaggaacttaatatttattaaaataaacacataatcagcttgaattctaacagtagacttgaagagatttccat<br>catgtatagctgagtgacaaaaagcaagactctggaatgtatatgattgattatcacatggaaaaaaaaaaaagcaatgacagtctcctccccaccacca<br>aagcataggtctacatttatatacatcattgatgttaaaaccaccatctaaggtgtgaaaacacatgcatgaaactgtttacattgatcaattgaggaga<br>agtggaatggggaagcaaaaatctca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	460	218	NA	intergenic
0	chr7	83547815	83548123	1000236	0	-	pAlu7-83308024; Ya5NBC210; RIP_Alu_chr7_083_01	GAGGGGGTAGGGATAGCATT	GTGTTAATATTGTCCCCACATGTAA	SINE	Alu	Ya5	atagtgcctagacagctagaaaacataaatttgcccaatttttcttgcctatcatgcccccatcagtccattcttcaggttgggtcattcttctaaatat<br>ggatctatatctaggtctagctacatagataataaacatatattacatatatatgcaatgatctcatatatatatatgaatcatgtgcattctttcttca<br>acttatttaaacctcttgcattgttttaatttgaacaaatgtaacacaaattatgttggaatctatgtcataggttatagtaattaattatttttactat<br>tttcatatttttgtatgtgttaatattgtccccacatgtaaactttaaaagttcttaatcacagagattaaagtatatttttt<font color="green"><u>AAAGAATTATAAGCTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGAATTATAAGCTGC</u></font>aaattataaactgagtaagatattaatcaaaattgcaactactcaaaataatttataataaagatttagtatgt<br>tttctccaaatgaaaatataatttggaatgataaatgtccaataaatatgaatggtaattttaagcctacggtataattttttatttttttttaggtagt<br>ctctttttttcttgttattattatactttaagttttagggcacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctg<br>cacccattaactcatcattcagcattagggatatctcctaatgctatccctaccccctccccccaccccacaacagtccccagagtgtgatgttcccctt<br>ccgtgtcca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	62	750	424	NA	intron:SEMA3A:NM:006080:4/17
0	chr7	38474998	38475312	1000237	0	+	Ya5NBC216; 4601; Ya5505; RIP_Alu_chr7_038_01	GATGTGACCCTGGCTTGTAAA	CAGAGTCCCTGTGCAAAATG	SINE	Alu	Ya5	ttgtcaaatcaattattatcctgagaaaatggtatagtatcagaaatatcttatttagaataactaaacatctatttctaatattttgttttttaattta<br>gaaattaactagcatgtatttaattaggataaagtgtccaacatttttgatacaactgatagtgattttctccaatttatgaagtcagagatcctgcaaa<br>gaggggaatgcctttaactagttcactattacagccctagcacctagtacacggcaagcatgagtaaatgaataaattccataaatgaacaaacaagcca<br>gtgaatgaagaaacttggcactcattccactataagagcatattccgatgtgaccctggcttgtaaaaacttaatgtaaccagcagt<font color="green"><u>AGAACATACAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AGAACATACAGAC</u></font>acagagtaccagcataccaggctcttgattctgatattatctgcttaaaagtttcattttgcacagggactc<br>tgagacatcaccatttccccaaatgtggcatcctcaggacacttcttattagctgtcaaaaccaacttaatttctttattaagatgtttctttgttctca<br>gaaataaaggaaaaattaagttgagcttatcacagctacagattgcagacctgagcactctccccttcgcaatgccctaaggaaatctgcctccctggag<br>gggagtgtcagtgcttcctgcagaccctcttgcagtggaggaggcaacccttgctgtccttcacttactatggagatggagtatgaggaagagttttttc<br>ctagctctcttctga	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	456	141	NA	intron:AMPH:NM:001635:7/21
0	chr7	127407402	127407708	1000238	0	-	Ya5NBC354; 239207; RIP_Alu_chr7_127_01	GTAGCTTGGCCTGTGCTCTT	CCTCTGGGCTGAGAAACTCTT	SINE	Alu	Ya5	gatcttgcaagtctccacttccatgaggtattctggcacacacctggcagccaaatgtaaaagctacttacttgcataaatttagagtgactttttctag<br>accaagctgttttatttgaacaaaatggttctgagatgtgtggagtgtacttctaaactattgccttttttgagctttcactcaaataaaattgctctga<br>gctcctcctcctgaggcaagtgaattccaaatgtctagagattagtatacttagcctacagtaggatgaggaggaaaaaccagctagtgtcaggaatatt<br>aagacttaagaaccaaagagcatgaataaaaaaaacctctgggctgagaaactcttagcaagagtccttcacctcactaactttacttt<font color="green"><u>AAAGAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAGAAAAAGA</u></font>ataaaataaaataaaataaagcaagcaaaaagggaaaggaattgtgaaaagtcaaggttctccaagagcacaggccaagcta<br>catatatcctatcctgagtagcttgaatcctgggccagctgtgggtcaagaatggcatttgccttattcatctatttattttttagttaccatactctaa<br>agcagggaacaacagacaacttcctgaagactaagtctgcccactgattttacagagctcatgagctaagaatgatttttacatttttgaatggttaaga<br>caaaaatcagaagaagaatatttgtgacatgttataggatataataaattcctcttcaaaggttttagcctgtaaattgttaagtacaatgagttctgag<br>gtccttt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	65	466	148	NA	intron:SND1:NM:014390:15/24
0	chr7	11990770	11991024	1000239	0	+	Ya5NBC361; RIP_Alu_chr7_011_01	AATATTTTCTCCCATTCTTTTGG	TGTTAAAAGCGCAAGTCACAA	SINE	Alu	Ya5	caaaacaatgggcaaaactgagagtacagaaataagctgttatactaaaggtcaattaattttcaaaaatgggtctaagatatttaatggggggagataa<br>agctttttaagaaatggtactaagacaataatatcttcatacaaaagaatgaaattagaatccttcatactataaaggaaaattaactccatatgaatca<br>tagacctaaatgtgaaaggtaaaactataaaaattcttagaagccacagaggagtacattttatcctttaattagtaatggtctgttagctaggatgtta<br>aaagcgcaagtcacaaaagaaaaaagtgaattggacattatcaaaattaaaaagaaaaaactttttgtatttcaaaggataccatc<font color="green"><u>AAGAAAGTGAAGAC<br></u></font><font color="red">GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCG<br>GGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCG<br>CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTGAAGAC</u></font>aacccaaa<br>agaatgggagaaaatatttgtgatcatatatttaataggggacttgtgtctagaattaataaagaactgtcaacttcaacaaaaagaaaaatagcccagt<br>ttaaaaataggcaaaagatttctcaaagaatatctattaatgatcaatagacacacagaaagatacttaatataatttatcatttgggaaatataaatca<br>aaatcacaatgagatatcataccacttcatattcactagggtggctaaaatcaaaaggcagacaataagaagtgttgatgagcatgtggagaagctgaaa<br>tcctcataaattgctgatgaggttctaaaatggtacagacacttagaaatttggcagttcaccaaaatattaaacatg	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	423	131	NA	intergenic
0	chr7	39558596	39558896	1000240	0	-	33173; Ya5495; RIP_Alu_chr7_039_02	GCCTTAGTGTGGCCCAAGT	CAGCCCCAAACCTTGACTTA	SINE	Alu	Ya5	agggggaggaggagggagtctggggctgtgtagtgttttctgataccacttctgacaccaaatgcgtgtctattattgacaccgaatatttttcacacca<br>attctctgacaccaactgggtgtccaatagttcagttcaattctgacactatctacctggagttagtgtcagatcccacaagttaaagggctcagtccca<br>aaagactgcccctatttcagctgctagccaccagtgtggtccccagtgaaccacacttctgtctaactgacaacaaagttggggattcctatgatcctca<br>cccttgccttagtgtggcccaagttaactagataatttgttagaatgaactcaagaaaatactctacttactattacagtttattat<font color="green"><u>AAAGGATACAACT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGGATACAACT</u></font>tagggccaggtggaagagatccctaagtcaaggtttggggctggagggtacagagcttccacatcctttccaggtactaccctccc<br>agcacacctgtgtgctcaccaacctggaagatcctcaaatcttgtcatttagtggtttttgtggaagtttcattgccaatgcataggcatgattgattaa<br>atcatttgccatgggtgatcgaactcaatctccagccttcctccactccccagaatgaggtgggggagggagactgaaatttctaaccctccattcatgt<br>ggctggtttttctggtgaccagctttcagtgagtcagctcatgagtatatgaaagacaataaatttcagggatttttggagttctatgccaggaacaggg<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	452	138	NA	intergenic
0	chr7	136502166	136502464	1000241	0	+	Ya5524; Ya5NBC242; Ya5ACA1650; RIP_Alu_chr7_136_01	GGCAATCTGACCTTGGGTAA	GGCTATTCAAGTGGCCAAGA	SINE	Alu	Ya5	tggtaatgtaattgtttgaaggtgtgtgtctattttcattagactcagagactcagaggcgggtcacctgcttgtctcttggttgtgcaacttcctcatt<br>gaaattactggtcataaatattgtcatatatatcctcaaacctccaactaacagcagaaatcccctgcaagctcttaactgagacacctttgaatagctt<br>cagtggctattcaagtggccaagagctcattacctatacagataatttgggtgatttaatagattaactcaactactcaattgggtaattcaaattatta<br>caatatactaaacaaaattccctttcctccagtggttttatcacacaaagctaaacggaatatatctactttgcagtgtctctttaaa<font color="green"><u>ATCTAACTTCTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>TCTAACTTCTG</u></font>ctagcatatatcctctttgtcatcattattataaacaatttacagatgcagaaactgaggctgaaaaacattaaacaccttacccaagg<br>tcagattgccaaggttaatggctattctgggacttaaactcagatctcttttatttcataatttatgaacataaacactatgctgtcctgaaaataacta<br>cattttctttaaaagcatctttttataagtggcttctacagcactataaatctcaaaattctttctccatataccatttaatttgtcagtttctttctca<br>aaatgtggccctgaaattaacaaaatgttgtcagttaaagacggagttcagggggattatcaccaaatttggtttggaccccagaagtctatcttagta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	605	310	NA	intergenic
0	chr7	134839756	134840073	1000242	0	-	Ya5ACA1592; RIP_Alu_chr7_134_01	ATTGGCTTGTGGATATGCCT	AAGAAATGCTCCACCCCTTT	SINE	Alu	Ya5	tgatgtattgctattaggataagtcttgctatttgtataggtgtgtatgtcagataactgttcaaaaacaacttttttaaagtatggctactaaaatctc<br>acctcttgagttttaaagcaattatggagtagaatttgaaatcaaaataatcaaaattggcttgtggatatgcctaaaaccagtttggaaaaaaggtcaa<br>ggcaaaaaagcagtgtaattagaagaataaaatgctttcccttaaaaatagtagatgtgaccgggcacggtggctcacgcctgtaatcccagcactttgg<br>gaggccgaggtgggcagatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatac<font color="green"><u>AAAAATTAGCCGGATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGATCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTAGCCGGATG</u></font>tggtggcacgtgcctgtaattccagctactcgggaggctgaggcaggagaatcatttgaacttggg<br>agtcagaggttgcagtgatctgagattgcgccattgcactctagcctgggtgacagagtgagactttgtctccaaaaaaaaaaaaaaaaattagtagatc<br>ttatattactgcttttggaagcaattagtgaatgatgtaggcaaaatagtgattgaattttgaaaagcaattagactgaaatttcaaaggggtggagcat<br>ttcttaatagcaacaaacagatacatggtcattaatccaaatatctgaaattttctgagcatgtttttcagagtttggaatagagtggaagtgctaattt<br>tctgattatttaagaacc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	850	516	NA	intron:CNOT4:NM:001008225:1/11
0	chr7	113740755	113741049	1000243	0	+	238237; Ya5ACA1611; RIP_Alu_chr7_113_01	TTTTGGTAAAGATGCCACAGAA	TCCTAAACATAATACGTACAGGTGA	SINE	Alu	Ya5	ctgaacatcttcatggtgcaatcacatagagtccagaaattctctgaaaataaggaaagtttctagactcactacatgcatcattcagggaaataaaaat<br>atggggttacattctgtgtctgaaagtttccaagctaaaagacaccactatgaacataagtttatagaataacatagctttggctcttctgtgatgaatt<br>atttggctcagtggtaacaatttacacatgacttttaggacattaatctaaaagatacttccactgattatttggaacatctttctggagaagacagtct<br>ctaaaatggagaatttttggtaaagatgccacagaatataatcttacatttccattttactaaattgttaatctattaaaggt<font color="green"><u>AAAACAAAAATATTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAC<br>AAAAATATTGTC</u></font>attatttgaaattgtataattttgtataatgttaaaaataactacaagaaaggatatataattctaacacatatcacctgtacgtatt<br>atgtttaggataattataatccaacattttatcttgagtctagttgtaactgatcaatattttttcaaactgaaagtctggctccattagtggtttatac<br>attaatttagtggattgcaaccagcatatttaaaaatgtaatgtaatagaataaatagaacagaacagaaagcagaaccaaaaagaatagaaaagaacag<br>aataaaatggaaaatacatgctattatggattaatatcctgtgaaacttttatgtacgtgtatttgagttctcagtgctaattacatttttttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	496	184	NA	intergenic
0	chr7	120668352	120668670	1000244	0	+	pAlu7-120421716; Ya5ACA1622; RIP_Alu_chr7_120_01	CATGCTTGCCAGAACAGAAT	GATGCTGGTTTTTGAATGGC	SINE	Alu	Ya5	aaattgaagactcagaggcctcagttctgggcctgccctgtcattaacagcatgatcccacttctgttatttaactctttgggcctcagattgcctcttc<br>tgttaaaaaaaaaaaaaaagtgacggggaagggagggagaaaggacacactctaaggcctcttctgactccatccaacgtgatgctacacagccactcaa<br>tgtgaacctctgtgaaggaaagactaccatttatctaaggaggtttgcttgagaaatacatcaacaaagattaaactttaggctgtgtctatatcaaaga<br>tgtggaggaggttggttattaatgacaaaccatgcttgccagaacagaattagaattagaaagcaagatatattctgaatg<font color="green"><u>AAAAAGAAATTATAAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAATTATAAAACA</u></font>gaattggatggaaaaataagcacttttgaggaagataatctttattttgccattcaaaaacc<br>agcatctctcctaaattttctgttgtttcttttagcagtacggccattctctacaaccagaaactttagaaacatctttcacatagcagaccctcgtttt<br>ctccaagatatgcagtcagttcttctggctcactcctgtcaggcccatctcttcactgtacctaaagtaccactccttccaggtcttcaaatcttatctg<br>tccctaaaggcctgttcacatattatctgcttcatggacccttccagaaaactctgacctccatgactctttctctatttggaacaattgtggctcactg<br>agagtagaggtgggaaaat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	476	158	NA	intron:C7orf58:NM:001105533:16/18
0	chr7	24644468	24644773	1000245	0	-	Ya5ACA1648; pAlu7-24386109; 238947; RIP_Alu_chr7_024_01	GCCTCACAGTTTGGTTCTATGG	GGACCTGCATTTGCTTTCTT	SINE	Alu	Ya5	accactcgtccctttgactttcactcctttgctctaagtaagagctatgaagaccatttatttcttcaggaaaatgttatatgatcagcaacagtacttt<br>agacaacagtagtccttggtttaattcaggactttaggagaagtaaaggaacagaaatgatcaatgacttgaaaactccattccttagtatgtgtattaa<br>cctaatgcttccaaattgggtgaggagaagtaggaatgtggaaagactaatggcaaggggttgggggtcaggggagagtcatgtgagaaggcagaatcat<br>gttagaaaaagaacccaagcacatctgaagattttttcatatcagcctcacagtttggttctatggaagaagagaatctcact<font color="green"><u>AGAAAATACAGAAATTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAATACAGAAATTG</u></font>aagggagaaaaaaaggtttttttagaaactgtagctataaatatattaacatggaaaaccaacatacttggattcaa<br>ctgggatcaattttactttttctaagaaagcaaatgcaggtccacatttattaacatatagctttttaagctctgagatgttgtcaaaaacttggaacct<br>ctaattcactttaaggtcagattttttttattagctttcaagaggcaagtaccaacttaaatttaactaatcaaactaaaaaagacaaaggaaacacaca<br>caaaaaataaccagaggagcaagtgagccacatactatttaaataaataaatcttgttttctttttttaaattaaagagcactattgcaacactagcata<br>actcaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	176	NA	intron:MPP6:NM:016447:3/13
0	chr7	27480875	27481135	1000246	0	+	Ya5ACA1672; RIP_Alu_chr7_027_01	GCACATGTAATGGGGCTTTT	GGGCACTGTACAAAATGCAA	SINE	Alu	Ya5	caaaacagtgctgaaattctctcacaaactcatctttacactcttccaaaatgctgaatcggtcaccagagcttccactattacttcacctaatgaccgg<br>cttagaagcccaacacctggtaggtactcaacaagtaaatggatgagttggtgaattaagttttaaaattaccttcatttgctacacatttagataagat<br>tctggagccattctcctcttaggagtcagtcgcacattatttctcgggatgagttatctcctgggaagatttccaaagaatcattcattagatcactttt<br>cacttatttactcactattcatctaacaaacatttcctgagggcctactacatacaaggctcaacagcacatgtaatggggctttt<font color="green"><u>AAAAAATTACATAT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATTGC<br>GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTACATAT</u></font>ataaatatacaaagaaaaaaaggca<br>tatcaaaataaagaacaaaagatataccaaaatgttaacagtggtgggatcattcatcatttttcttccttctttttgcttatttgcattttgtacagtg<br>cccatgtcttgtttatttaaagtgttctaaagcattcaagatgcatcttgccctcaaaaaacatggatagagtgagtgggcaggaaatgggacaagacaa<br>gctgaaaaatgacaactctgacacaagtgcagaccgtgatcatttccctaagaggcttaaatgctgtcagggttaagaggaaattgcgatgaccttgaca<br>gatgagagaccaggtcacagaggtaccatccttgaagcacaggagggtttctccagggagc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	437	162	NA	intergenic
0	chr7	76405161	76405162	1000247	0	+	Ya5ACA1693; RIP_Alu_chr7_076_01	CTCAAAGCTCAGAGGAGGGA	ATCCTACTCTGCTCCAGCCA	SINE	Alu	Ya5	tcaccaggaagtcttcctgtgtttaccctaaacataattcagagaccaattactcctcaccgcctccatggctatcactttcgtcagacttgctacattt<br>tagcaatcgtcttataactgttttcctattcccacccttgcctccttccattctattgcccacaaagaaacataagtgatccttttgaaacataagtcag<br>atcacggcatttctttcccaaaaagaaatgcaagtgtctaaattcttcgcctacctcagggtaaaagtccaagttcttatatggcctttaaagacctctg<br>tgtactctcctcctccctccattagttctctgatcttcccttcttcttttcttcctcatcctactctgctccagccacgcagtctttc<font color="green"><u>TGGCTATTTCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGGCTATTTCTT</u></font>gaacatagtaaacatgatccctcctctgagctttgagttgtttcctttgcctgggaaattccatctggagacttccgg<br>gcttgctcacctatataggcaagtctgtacatgagacctgctctgaccactcaatttaaaatggcagcaaaatccttcctggcaccccacctttaaaatg<br>gcaacaaaagccttcctggcacctttcctttctagctttggacctattacataatctatgtatcttttgtgttatcatctgccttccccgccagtatgta<br>aactccacaaaggttgagatttttgtttggttcactgatgtatcccaaggacacagttcagtatctaacttgcagtggaaactcaccaagtatttatcaa<br>attatttgat	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	396	80	NA	intergenic
0	chr8	61367552	61367857	1000248	0	-	Ya5ACA1766; RIP_Alu_chr8_061_01	CATCATGGTATCCCAAGCCT	TTCTTCTGGGCAGTCTGTCA	SINE	Alu	Ya5	tttgcataattatttacaacgttcaggaaacctcatatatattgacttttatttgtttgacagttgtgagttgatgagagtgctaatgtcttagtgaatg<br>aatgtggatgaaacaacatgtgtgtgcagttctcagaataaaggcacacgaggttgttttttgatttacagtcagggcttctgtatatcaggcttccttg<br>ttgatggctctgtgtgaaacccaaaagccccccatctataggacattttccaatggttatatgatttctaaagcctgtttctcatggttataacattgaa<br>gaattttgagtgtgggtatactattttcaaagttctatgttccttgagcacaaagaccaattctagtcatcatggtatcccaagccttt<font color="green"><u>AGGACAGTGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGGACAGTGTC</u></font>ttccagagtacctaatcaataaatatcacctggatgaatggatgtatgattgagcatgctgaagtcagtaaagcttaggtaga<br>gcagtgtcgttatagtattgacagactgcccagaagaaccccaggacttaagtgtttgtattctcattgtgtccttcaatgtgcagaaagctcatatctc<br>aaaagatcttctggccttcttcctatgacctcagctccatgatggacccgctgattacctctgtcactcttgaaatgtaaatatcatctcctatttatgt<br>gatcatgggttaaggaggcttagagataactagtcccaaatgcatgtgggtgtctaaaaccagactatcttgatgtcaagtacctagagctactgctgat<br>taccag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	471	154	NA	intergenic
0	chr9	35793109	35793399	1000249	0	-	Ya5NBC240; Ya5ACA1878; 238279; RIP_Alu_chr9_035_01	AAGGGCAGACATGCCAAATA	TCAGGTCTCTTTCCATCATCTCT	SINE	Alu	Ya5	aataacttcatgagaattcagcagaaaaccaaagctagtttcagatacagtgtggggtgatccactgggatgctcattggctatgagacttatttcagaa<br>aacctgtccaactcatgcaagattctattttatgctccacaaatccatgggcctctgagtcatttgaacatagctaaaacctagtataacagaagagtac<br>caaaggtttttagtacaatcttccttggtttctcttagttctactagtaaatgttccttttttaaatttcagttttctgaacaaaagggcagacatgcca<br>aatattggtcagagagtaaaataatgagaggaaaaacaggagataaatatgttcggagagtaaaataatgagaggaaaaacaagagat<font color="green"><u>AAATATGTTCAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAATATGTT<br>CAG</u></font>agactccactcattttatgagttcttagaggtaaaagagatgatggaaagagacctgagatatttaagacagaaagatagaaactctctacaggcac<br>aggactccttgtggcaggtaaaactcactgtcccagttataagccccagactccttgtttacccattattaccagaccatgggaataaggggagatgaga<br>gaacaggacttcagaggactagaaggagaaaaaccacaatcaaagaacagtggaagtgatttaaagtggatgaacttttaaggagtggggaagactcacc<br>ttaacaaggtcattaatgagtgaataacgaaacatccagtccaagttgatgctgtcattttctagaatatcctggtaagtgacatggaata	UCSC	<UL><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	505	202	NA	intron:NPR2:NM:003995:12/22
0	chr1	239427177	239427475	1000250	0	-	pAlu1-237657038; Ya5ACA614; RIP_Alu_chr1_237_01	TGGTGCTTCTTGCTATACCATC	CAAACATTTTCAGGCTGGATT	SINE	Alu	Ya5	atagatagatagataatgtttaattttggtaaattatgcatttgggaagaatattattatacagtagtaatgttttgaatatttcaactagatcaagttt<br>gcaatctttttttttttttttggtcttttatctctttactgattgtttttttctgcctggtccatcagttaataagtatatgtatggaaatctctcacta<br>caattttgaatttttatatatctccttttacttctaataatttacctttgtatattctgacactatttattaactgtgcacaagttttaaaatgtgtctt<br>cctcatggattgactgttctatcattatggaaagtgatctttatctctagtggtgcttcttgctataccatctactttgagatt<font color="green"><u>AAGATACTTTGATTAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATACTTTGATTAG</u></font>tatttttatggtatatatattttctatttttagtttcaacttttttatattcttatatttaaggtgagtctcttgtgtcatataa<br>ttattttttaaatccagcctgaaaatgtttgttatttaattggagtgtttagtccatttacatttaatgttattgatatattaagtttaaaatctagaac<br>tttacatttattttctaattaacccagcatattccttatttgttcttttttttttttttttacattcttttggatggattcagtattatttatttttccc<br>tttctccccagtactagctggtcagatacacattcttttaccattgtattagtgcttaccctagcttatgaaatataatacatccctgaaattcaagtc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	481	166	NA	intron:RGS7:NM:002924:2/18
0	chr1	237492891	237492892	1000251	0	+	Ya5ACA630; 14975; RIP_Alu_chr1_235_01	CCAGTCTGCTAAGACAGTTTTGAA	AGCGGGTACAGTAGGCAGAA	SINE	Alu	Ya5	accagtacacatgaattatcttacagttttcatgggataggagtgcagataagagttagctggtttctctgttcaaggtctcaaccaggtttaaatcaag<br>gtggggctgagctgtgttcttacctgggacttaagagtcctcttccaaatcactgattgttgacaggattcagttccctcaagctggagagctgtgtttc<br>ctgttttcttgctggctgttggccagggatcatcaacttcaactcctagaagccagcctcaggtcctaaccacattttctcctcctcttgcaaaatggca<br>gcttaggttttcaaggacagtaagagaatacctttcatttcgaatctctctctctatccagtctgctaagacagttttgaattactt<font color="green"><u>AAGAAGGAATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAGGAATTGG</u></font>ctgtcccatcatgttcaaatgtctcacccatgttgaaggagagggaataatacagagtgtgcacatcaggggccagg<br>aatcttaggggttatatttttctgcctactgtacccgctcactaaaatcttttctagcgaaaagggagaatgttttcacaaacagctatgataccaaatc<br>taatcccactattattatatactcccaacattttcaaaaaaaaaaatctgagtattaggactaaatacttagaatgtattaaaatatatactaaatgtaa<br>gatagtaagttttgtttaaagttgaggctcatgtttataattcgttgcctttttcttcaacagaacatttaaaatctcctgtatatttcatggaattgca<br>aatatgatgc	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	498	159	NA	intergenic
0	chr1	77537583	77537584	1000252	0	+	Ya5ACA641; RIP_Alu_chr1_077_01	CCAACTCCAGGCTTCTTTCA	TTGTTCTCCTTTGCCCATTT	SINE	Alu	Ya5	tccatcaataccctcccattccgctgctcctcctttcctgagaaataggagtactgttaggtttgttatatattcttccagacctttttctatacttaca<br>tgcatacatacatgtatggacacatgtgcacatgctcatatacaaatgcattctaaatttttataatgacttttccaagttatatcaatgttgaatgaca<br>gtatctttttctacagaccctttccaaccagatacgattcatgtttaaaatttttgcaaacctgatgagtaaatggcattttgtgttttaaatttgcatt<br>tcatgggttactattaaggttaagtatattttcatacactcattggccatgtgtatttcttccttatgtgaattgcttgttctcctt<font color="green"><u>TGCCCATTTTTCT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>TGCCCATTTTTCT</u></font>acagactttttaatctttttcttatttatttcaaggagcatttaacatattacagatatcgtattaaacagtattaa<br>gtaaaatatgatgtcagtttatgcatcacatgaaagaagcctggagttgggcagttcacggccaggggtagctttacaaaacatttttttgaatgttccc<br>attaacggttttggatcacctattgtgctagaatgtctgcctccccttcttaggtttcctctcccaccataagtccagaaactctggtgctcagtcagct<br>taaaggcttggttctaattgttctggctttgaagagagaaaaactggaaaatatctgatgaagttttgttattgctgttgctaccacattatattgctgt<br>tgaaagcggg	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	151	NA	intron:AK5:NM:174858:5/14
0	chr1	88888321	88888322	1000253	0	+	Ya5ACA659; RIP_Alu_chr1_088_01	TCTGTGCAAAGCAGAGGGAT	AACAATGCCTAGCACAGGGT	SINE	Alu	Ya5	ttctaattcactttaaatggagtttacattggaaaaaaataaagacagtggagcatttgatcccatgcatcaaaaagcacttactgagcaccttggtaat<br>acaggttatatctgcatgcctcaatttctagcatgcttacataaattacctcatatgtgagctaagtaggcagataatcaatgagttattgtctgtgaaa<br>cactttaactgaatatacaatgtaaacattaagaaaaaatttctattttacacataagcaaatggggtctcaaagaagtggagagacctgcctaatctga<br>caggccaggtgtcctgactaccataaagctttgcatcacactgctttcctgtgagtctcctctgtgcaaagcagagggatatgtt<font color="green"><u>GAAACCTCTGATTTG<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAACCTCTGATTTG</u></font>aaagggtttacaaatcagttatagacaaatgacatacacataaaagaataacatgatgataatagtgaagatggt<br>gatgatagttgacacttttatggtacttaccctgtgctaggcattgttatacatgaagtgacccatttaaatctcttagcaatctttcaaaataggcatc<br>atgagataattaaggcacagagagatttagttacttgcctgaagttaccgggatagtgtgtggtaggattgaaatcatttgaagtcagctgcctggctcc<br>agggactatgtttgactactatactctactgcctttctataaaacagtatatggaatacattctatattcatgatctaattagtgtgttagaatgtcagg<br>gagatttata	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	478	163	NA	intergenic
0	chr1	148958076	148958394	1000254	0	+	Ya5ACA702; pAlu1-147466446; RIP_Alu_chr1_147_01	AATGCAATGCAGCAAACATC	CAGTTGCAGAGGACTCCCAT	SINE	Alu	Ya5	aaaatcctatacaaatatagcaaatgcatatttgtgtctcggttacaaacattcattttctttctttttgagacggagtctcactgttacccaggctgga<br>gtgcagtggtgtgatctcgactcactgcaacctcccccttctgagttcaagcgattctcctgcctcagccaccttcatagctgagactacaggcgtgagc<br>caccgtgcccggcctcattttcttatttatttaattttattctgcttatatattgaacattcatgttctagaggtggactgctatgaacaataatttcat<br>caaagcaacaaagcagtattcattaatacctaatgtaaattaaatgtgaatgagcaatttaatgcaatgcagcaaacatccaata<font color="green"><u>GAATTCTCAATTAAT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAATTCTCAATTAAT</u></font>tcaaaatacttcagcaaatatcttcatttcttaaaacatgcagtttcctggtatcataaaaccctc<br>aaatagttgagccctaacttccaacagagtatttgagacttcaagaaacaataaaagcagctattattaagatataccaaaatacaagaaatcataccat<br>gggagtcctctgcaactgggcagtggccatcttcttctgataaagtattttctttaattcaaccttgtgacacaaatacaagctttaacttagagctcat<br>ttttttcctctaacatttcagtttaccacatataaaattcaaaacaattttatgtgaataaatttgaatttctttaattaaaatagagtcttcaaaaacg<br>tagaggtcgatattgcagt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	558	224	NA	intron:HORMAD1:NM:032132:2/15
0	chr1	160319305	160319609	1000255	0	-	pAlu1-158748606; 52678; Ya5ACA728; RIP_Alu_chr1_158_01	ACACGAGTGCTTCTTCCCAC	CATTCCCAGAGATGTTGCCT	SINE	Alu	Ya5	tttaacctgggctgccaaatttaagaaatctagccacattaaagagccaatttgaggccaggcacagtggctcacacctgtaatcctagcactttgggag<br>gccagggcaggaggattgcttgagcccaggagtttgagaccagactgggcaatatagtgagaccctgtctccaaataaaaaaattgccaatttgaaaatg<br>tagttacagtggaggctatgtgtgtttatggaaaatagcatggactcaagataatatgttatctgtcacttggcccacaggagacatgaatcttcctctc<br>cgcagaacaataaaatgcttctacacgagtgcttcttcccacccaaagaaaccaaaagaaaaagcaaagagtttacagtcaagat<font color="green"><u>AGAAAAAAAGGACAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAAAAAAGGACAC</u></font>aaccaaggagcttttccattgtgcgtggtggactgagatttccaatccaaaaggcaacatctctgggaatgaccttttca<br>gcgttttgtactctaccagaggcaccatggggcctctgggtggagagaacttgtcctcaaaaatagaggtgggccaataaacatatgcaaaaaaagctca<br>acatcactgatcattacagaaatgcaaatcaaaaccacaatgagataccatctaacaccagtcaaaaggggtattactaaaaagtcaaaaaataacagat<br>gttggcaaggttgtaaagaaaaaggaacccttatagactgttggtgggagtataaattagttcagccattgtggaaaacagtgtggcaattcctcaaaga<br>cctaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	469	149	NA	intron:NOS1AP:NM:014697:1/10
0	chr1	208361944	208362245	1000256	0	-	15439; Ya5ACA759; pAlu1-206934322; RIP_Alu_chr1_206_01	CCCACAATAAACATGTGGCA	CAAGCAGCTTAAACCAGGCT	SINE	Alu	Ya5	gtctgtttttttgtacagccagcatgctaagaaaggttttacatttttaaaaagaattgtaaaaaaaaaaaatgcgacagagaccatatgtggaacctaa<br>aaaaaaaaaaatgaactctctggcactttacagaaaaagtttgccaacccctgctttagacaatgaaatgtaaatggaagtggcatgtgtcaattttggg<br>caaaagctttaaaagacaaggattagttttctatgctctctgccatgacaaccaagaaagtttcagaaagaacctgcccaatcagtctggatcttacagt<br>gaagaaaacatggaatagagccataattgacccacaataaacatgtggcataagtaagaaataaacctttgttgtgggcattt<font color="green"><u>AAAAGTTTCAGGATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGTTTCAGGATTTG</u></font>ttacttcagaatagcctggtttaagctgcttgatatgtatcaatgtaatatgagttactacgcatgcctgaaaataataaa<br>agtgcatttatttaaagaatatttataattcagtcatcttaataattactcagaatatatttctttcttcttttttttttttttgaaatggggtctcgct<br>ctgtcgcccaggctagagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctg<br>ggactacaggcgcccgccaccacgcctggctaattttttgtatttttagtagagacagagtttcaccatgttagccaggatggtctcaatctcctgacct<br>tg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	421	101	NA	intron:SYT14:NM:001146264:7/9
0	chr1	216852554	216852856	1000257	0	-	Ya5ACA769; RIP_Alu_chr1_215_01	CCTGTCATTGATGAGTTTGAGG	GCATTTAAAGACCGCAAAGG	SINE	Alu	Ya5	tgcccaacaatataattgtctcaggaggcacaagtgactggaaaacacaagatcatacacagcacctccttcctaatcaaacactacagaatagtaagct<br>taagctcatataaacctttgcaaattttcaaaaaattctatactccatgatgctgactcaatacaatgttttcgtgactttgttttaaaaatgatagggt<br>atcagctttgtattaggtgaaatatacctgccaggtatatatgttaggtaaatacacctgtcattgatgagtttgaggaatgaaaaacacagatccttgc<br>taaacaatgtgaagagttctgtaactgagatatgaataggggattataagagtgaaagaagatagccaaagaaaattatctgg<font color="green"><u>AAGAAACAAAGCTTTTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAACAAAGCTTTTG</u></font>cctttgcggtctttaaatgccttgctccaaatactgtgtgttgcttgctgaaaaaaaaaaaaaaaaaaaaaaaaaatcag<br>tccaattcagtctttaccaagctattttcttttttttttctttaactatattgagtcagaccatgacacaccccactggccctatgctcaatgccttcct<br>gggtccatccactcacccatgtcccagaccaaactgtgccctggcacagaaacctgagtctttcaaccaacacttcatataacatgcaacattcacctag<br>gagtttagtaagaggggatcaccttagccagacaaccagaattgtggctgtgactggaaggaggaggagagaaacaggaagaggaaaaaggtggaggaga<br>tgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	484	164	NA	intergenic
0	chr2	206439445	206439750	1000258	0	+	Ya5499; 9131; pAlu2-206695121; RIP_Alu_chr2_206_01	TCCACCAATTTGAGCTGTCA	GCTGAGCTGGACTTGGATGT	SINE	Alu	Ya5	catctcttctgaatggtcagttcaattaccacactgatggttaaatgtttttaccaacacccctgggattataaagattaggagggagaaatatgccaac<br>agtactggaaatggtcatgccacccgtcctgtcattgttaaaaaatcattttgcctttgattctgggaagcacacgcctgggaatactccccaggcctct<br>cacttgaccccaatagaactgtcccttttatgccaccaaatgagcttcgtgattagtcatgcctgtttcagctggctaagtgcccaagcagtgcctgagg<br>ctggtccaagtgtttcttccaccaatttgagctgtcaaatccactcattttcctaggttagtagtggcagtacagtcatcctc<font color="green"><u>AAAAGAGACATTTCCTG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGAGACATTTCCTG</u></font>agggccaaggctcacgtgttccctagaatcacatccaagtccagctcagcctggtgtgatgtaggctggaaccatga<br>ttaggaattcagagaagcaaatccagctgctccacacttggaccattccactcctgacgcttgttccaagttatagctgacaggctgcctatgttttcct<br>aggttccccatccacagatttagataagagagaggtgttcttgctgtagtcattgactttataatttgggagttttcatataattgggggtttaggtttt<br>tttcatggttcaagctggtcccatattttacatccctctctctccctattagggctcaggatgctgaattgtgattttgcatttgcacatttgtatcctc<br>cactgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	456	133	NA	intergenic
0	chr2	208275470	208275775	1000259	0	-	Ya5ACA784; RIP_Alu_chr2_208_01	GAAAGTCCCTCAGGAAACCC	GGGCATACCTTGCTTCAAAA	SINE	Alu	Ya5	cactgcaacctctacctcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggacaacaggcatgtgacaccacgccaggctaatttttt<br>ggtatttttttgtagagacagggtttcaccatattggtcaggctggtcttgtactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgg<br>gattacaggaatgagccacggcacgggcctatcattgctacatttaactagcaattaccatgtgaatgtgtactgggtattgctttacatgattaactaa<br>tacccacaaaaatcccaggatatgtaatatgaaagtccctcaggaaaccctccaccaagaccaaagacctgcctaactccatcacataagaatttccct<font color="green"><u>T<br></u></font><font color="red">CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>T</u></font>ggatggaatgagcagactgtgtgctatggcctgtttttgaagcaaggtatgcccaggtctgggtgcccttccccagaagtatcaggggaggag<br>tctgcaacatctgtaaactctgcttagtcctcttttgggtagaaatcatactcttctggcattttatgtttctataaaagaatagggagaaacctgcccc<br>tcagagttctcagtgaggtagaagggccacaattaggtagcaattatgattaggtatctatatagaggaaaggaacaaacagggtcagaaaaataaatat<br>tccctattgatatcctaacaaggccttgactgaaagcaaaacaaacacagaatgagcaatgcagcttctgaggctcaagacaatttggataattaattat<br>aattaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	431	115	NA	intergenic
0	chr2	28207457	28207751	1000260	0	-	Ya5ACA791; RIP_Alu_chr2_028_01	GGTATCCACTGATCGCTTAC	AGTGATTCTCGGGTTTCAG	SINE	Alu	Ya5	ctcccttatttacccatcctctccttttctgccccaacttatccctgctaaacactcactcgttcttctcctatgaactgtatcaataataataatattc<br>atggctattacttgctgagtgtttactgtagtgccaggcactgtgattaatgctttatgaacagtattaatataatcctgaaaacaacactaagaaatag<br>gtattattatgtctattttatgactgaggaaacaagctcagagaagttacattttgtgacagctggtgagtggcaggaaccaggtttaaactagatctgc<br>ttgactcagagcccttgccttatgccacgtcattctactgcctctggtatccactgatcgcttactaatatgggtcagtattttcaatt<font color="green"><u>AAAAAATAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAA<br>ATAATA</u></font>ataataataataataataataaaacactctttggggccaggcactgtggctcatgcctgtaatcctagcactttgggaggccgaagcgggcaga<br>tcacctgaggtcaggagttcgagaccagcttggccaacatggtgaaactctgtctctaatgaaaatacaaaaaattagctgggcgtggtggctggtgcct<br>gtagtcccaggtactcgggaggctgaaacccgagaatcacttgaacccagaaggtggaggttgcagtgagccgagattgcaccactgcactccagcctgg<br>atgacagagtgagactctgtctcaaaacaaacaaacaaacaaaaaacaaaaaacagaaacattctttgggaggccgaggcagcagaatcacttga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	598	230	NA	intron:BRE:NM:199191:7/12
0	chr2	38924995	38925323	1000261	0	+	pAlu2-39029100; Ya5ACA828; RIP_Alu_chr2_038_01	GTGAGAACAGAACAAAACAACACA	CCAACTTGAATGCTACCTCCA	SINE	Alu	Ya5	ggctattctttcagcccaatcattcttgttttatgtttcatttctctatgatttcctataagatttcatttgcataaagtgtattgtagctttttaaaaa<br>aaagatttaaaaacctatgattctataatcctgacttcctccaaccccttctctccattaaatgccaacactcttttcacattcaccgtttgtttgttta<br>ttgaatatttactgaatgcctattttggacaagggactatggtgacggtggtggtatggtatagaaaaataagtatactttcaaggagcttacaaactag<br>tgagaacagaacaaaacaacacactatactgtaagacagaaataaatgttattagaggcacaagaaaagtattctgtgacttctaat<font color="green"><u>AAAGAAATGATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATGATTA</u></font>atttttaatagcagaaaataggaaatttcatggaggtagcattcaagttgggtgttaa<br>agaatgactagagaaggaagtgggaaaaagaaatacagatagtaatagtatggcatctttcagaaataacaagtagtctgagagtgctaaggttttatag<br>gtaggaaactaaagaaggaagggaacttaaatattggctggggtcagatgatatgggcctttagtgtccacaaagtgtgagtgatagggaaccaatgaaa<br>atttctaagaataggaggaatgtgaacaattctatgtttaaagataattctgagcctgggcaacatagtgagaccttgtctctactaaaaataaaaaaat<br>tagccaggcatggtggcacacatctgtag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	494	152	NA	intron:DHX57:NM:198963:11/24
0	chr2	113913923	113914230	1000262	0	-	Ya5ACA864; RIP_Alu_chr2_113_01	GCTGAGCCTTGGTGAAAAAG	TCACTGAATTCCCCTCCATT	SINE	Alu	Ya5	atatcttttaggtcatattcctttcaaagctttttaagagatgaaggcttatatttagagtactttaggaagctcaacatcacaaaaatatgaagtatag<br>aatgggagagacttagggcaatgaggaaaatcttaaaaccagtccaagcctgagacagaggccctgaacatgagtgtttcacagggcagtgatgtgaaaa<br>ctgaaaggaaagggtgaatgtaagaaatcttctaagagaagatttactagggctttttaaccatattatgaaaaaaaaaacactttaagacatagctcat<br>tcattcgaaggtttctaatacgttacagatttatgctgagccttggtgaaaaagtgaacaagatagtctctgccttcatagagcttagaaat<font color="green"><u>ATTAAGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>ATTAAGGG</u></font>aaggggggaatggaggggaattcagtgaataaggaggcaattatgtcacagggtgacatattcaataggagatgcacaaaatgc<br>tatggagaacctaagagggacatctagccagaggagtcacagtaaaaaagtacctattccaaggggctaaaacacttggcacctttgaagtaacattagt<br>tcattgtgcggggccaatttggcaggctggaaaggttggcaagatccagatgctacaggtccttgtaattcatgttaaggaatttggattttaacccata<br>gggatgccactgaaaggtgtgacgcagtcggattgacatttataaagatcattaaggctaacatgcaacgaataaattaaagggcagcaagactccagat<br>tagtcagg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	410	94	NA	intron:CBWD2:NM:172003:1/15
0	chr2	55937047	55937347	1000263	0	-	Ya5ACA877; RIP_Alu_chr2_055_01	AAGCCTCCCTGGAAAAGTGT	TCCAAAGGATGTTTGCATGA	SINE	Alu	Ya5	cgtaaacctcgttgttccaaacactcaaccaagatcctgactcctaataatgaatcatgtggtgaaaaatctcactccatccatcagtttatttacctaa<br>ccttttttctctctttccttactcctcttcataaacatggatacaatggctgtttaaacaccatatctacttttaaggaatatacagtttattggagaga<br>caaagtaatcaaataatcttacagacgaatgtaattttagaaattacatgttaatatactttgcacattgcaactgtgacacgtgctacaaaaaaaggaa<br>tgtggtgctacaggagcctataaggagaaactcaaatgacctactcaagcctccctggaaaagtgtctcttgaactgagatctt<font color="green"><u>AAAGATGAGTAGGAGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAGATGAGTAGGAGT</u></font>taactacataaaataggtagggaaaaacattcagaaagggatctgctcatgcaaacatcctttggagggagggaacattttct<br>gggacccagtccaatcaaccaaaataccagtgtagctggagccacagataaggctggctacagtataatctataaagagtaaaaacacaactttaaagta<br>aagaagtagtaaagagcaaagtaaagagtaaagacacaactttagagtaaagaagttgtgtctttactcttatatcaatgggaaggtatttaaatatttt<br>aagcaggtaagtaacaatcagattcacactttggaaaaattccgtttagcctggagataggttggaagtgggctcagatggatgcaggttagaaagctat<br>t	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	437	120	NA	intergenic
0	chr2	134176750	134177041	1000264	0	-	pAlu2-134482500; Ya5ACA891; RIP_Alu_chr2_134_01	GCCAGACTCCCTCTCTGATG	ATGGTTCCATCTTGTTTGGC	SINE	Alu	Ya5	attctctgagcagacctgggctggtgcataaaccatggctctctcctcctcaccattttagttactgctaacttagaacacaccacctgtctctcacctt<br>cactgctgctgccacttctctgtttccattccagccccaaccattcactgtccacacaacaattaaaaagggatcattttccagtatgaatggaatcaca<br>tcccttccctgatcaaaagcctcccagggcttcccattacttttaagaacaaaatccatatgagttatttaaggcctgcctgacttggccccatacgcct<br>cttctccttctgtttccacgttctgccagactccctctctgatgcacacaggccccctcccaccttcctcctccagagatagctt<font color="green"><u>AGAAAAAGAGACGAG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AGAAAAAG<br>AGACGAG</u></font>tgaggagaacgttaagcaaggtgagaactatccttcataccatgaaaataagcttatggtaagccaaacaagatggaaccatggatttaaagc<br>tttgtggatcatgatctgcagtaagcaaatgcagtttacacacacatacacacacacagccaaaaagagtcatttcattaaacaatgtaatatggtctta<br>tgtggtatatactctgatattttcttatataagtaatatagtaatatattacttatatataaaatatgttatacatgaaatatatataaatataaaaaat<br>atataacatattttatataacgtatataatatatataagtaatatatatattacttatacagtaatataaaaatactgacttttccatgcta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	465	158	NA	intergenic
0	chr2	41796104	41796419	1000265	0	+	Ya5ACA912; RIP_Alu_chr2_041_01	CCATGTCAGTAGCTTTCACG	GCCTGACAAAGATGAAACTG	SINE	Alu	Ya5	taaacatcagcactaaaaatacaagtagttacaagaagtggcctccaggaaccagaactgagggaagaagctacacgggactggagccagttgcttttct<br>cagaaacccttctgtaatatttgaatcattatcttaagcatacctttctttgcaaatttaaaaagattaaaatgtcataaatgtagaaagcaaataaggc<br>cataaaggtaaaaataataataataataattgtgatgagagggcaggagacggggtgggagggaatatggctgtgatggacatcatccacgtgcaggaca<br>gaatcacagaggccaccctgtaggtcagcctggcagcattcagcgtccttgtgggctggcccatgtcagtagctttcacgaacaaaacac<font color="green"><u>AGTCACCCAG<br></u></font><font color="red">GCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTGTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGTAGAATGGCGTG<br>AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAACCACACACACAG</font><font color="green"><u>AGTCACCCAG</u></font>tctcatttcagtttcagtttcatctttgtcaggcccagccttggtctccagtcctgactcttataatgaccttt<br>ctctccaccccacggcccaatagtcacatcttccacattgtcctagaaatcatgtcatttccaatttctagaaggtccttggcatccaaagcaattctgg<br>ggtcctgagtcaacatcttcctcctataacctctttctctttttcctgtttttccaaaaggaaaccaatgctcctaaaagtattttcttaagcaagctct<br>cagttgcagagagctctgagtccctaacatttggaccttttactgttttctcacatgttaaacactgtatcccaatgtctaaaatagtaagaaggtcaat<br>ccacacagaaaatgca	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	400	74	NA	intergenic
0	chr2	161503857	161504170	1000266	0	-	pAlu2-161759537; 8756; Ya5ACA914; RIP_Alu_chr2_161_01	AGCATTGCATTTTTGGAAGG	TACATTCTTGTTGCTGGGCA	SINE	Alu	Ya5	attcacccaacaattcgccaagggctacctgcattgtcattgcatactataagtcagactgaaagcagggaaggcaggtgaagctctgccttccccactc<br>atctcctggatgggtagagcaatgatgtgccacacctcatttcctgttatccccacttcagggcccccggcctatcacaactgcaaaccccaaacttctc<br>tctatagataatatactactagaaaaatgtctactgtccccttacaatctagtaaattaaaatatattccctgtccctttagcattgcatttttggaagg<br>cttctcacttcaaatttggaaaataacaaggaaatgtcaatagtctttaaaaagtctccaaaagtacttcttgtagcgtcagcctctctt<font color="green"><u>AAGAATCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAGAATCTTC</u></font>tacttgttctctgcacttttagaggcatgcccagcaacaagaatgtaacgattgcattttaacacttcattcattt<br>tgctttctaaaagaagattaaatgaaggatattaagtcccctccacatgctaagaattctgaggagtaacttcaggatgaaaacatatatgatcctgctc<br>ttcttccctaggtatccagatgttgaacttggactgtgtaagtctcttccagatatagtttggatatctgtccccactaagtctcatgttgaaatgtagt<br>ccccaatgttggagtcacagcctaatgggaggtgtttggatcatgggggtggatccctcatgaatggtttgggccatccccttggtgatgagtgaggtgt<br>cactctgagttcac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	491	167	NA	intergenic
0	chr2	169103724	169104020	1000267	0	-	pAlu2-169359396; 238889; Ya5ACA921; RIP_Alu_chr2_169_01	GAAGTTAATGAGGGTGCCCA	ACTGAGCAGAGTGTATGACCG	SINE	Alu	Ya5	gactgattttgaaagctaatatgcaggtgcatgtttagacatatacatgtgcatgtgcctgagtgagcaggcatatgtgcatgactgtatattgttaaat<br>cctacctaagacaaaactgtttcaagaaaacaaatatttagtggaatgaaggccaggatggagaaaggggactgctatttattgacagatactatatgcc<br>aaaagctttgcaatgtttaattcttttttagatcaacaataaccctttcaattaaatatttatttcatttaacagaaatataaactaaagctcaaagaag<br>ttaatgagggtgcccaaggtcttaaaggtagttaaatagcttagacaaaatttagatccgatcaatcataacataatctattaat<font color="green"><u>AAAAACAATATTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACAATATTTTC</u></font>cacactccctaaaataagaaaagtaaattaaagaggtattgttaaaatacttgtgatacggtcatacactctgctcagtaatcccact<br>tttaggtatttatctaagacaatctgtcagacaaagaagaaaggccacagatgtaaagattttcacgcacaattatctgcagagggaaaatggcaaatag<br>cttaatgagtcactacaaaatgactcagtgagcatctattatgtatcagccctgctctaggtgttggggatgctgcagtgaacaaaatcccatttttatg<br>gagcttacattctagcagagggagattaaaaataaaccaagcagtgtatgctatgccagatggtgagaagtgctagagagaaaaatacagcctgcta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	495	183	NA	intron:LASS6:NM:203463:1/10
0	chr2	165975770	165976078	1000268	0	+	Ya5ACA923; 10935; RIP_Alu_chr2_166_01	TGAGGCTACTACCCCTTCAA	TGGCTGTTCAGAACTTTCAC	SINE	Alu	Ya5	tcaattaacttataaataataatgaattaagtttcctatttcagccacagttattctctattagctgaaatgctccttctctcgcgctctctctctctct<br>ctctctctctctctctgtctctctgtctttccctctcttattagatttctacatataacttttcctgtttcagagggaattaattttttttcccagtata<br>catcccttctttggagaaggaagattgtttaagattggctttattgactctactgcactagagacaaaacagaaataagtaggcaaaggtatttatgtgg<br>aaatgttttaaccattagtattaggtgaaagttctttatagcttttagaatattgtcctgaggctactaccccttcaaggggctta<font color="green"><u>AAAGCTCCAGACCC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAGCTCCAGACCC</u></font>agcttttagtgaaagttctgaacagccaagttggaaagttatttttttaagctgaaagtaaaaggtagaaaaatgga<br>tagtataatagaactagaatattttcacttcttatttcaggggttgttttttacctgattaccctaattgatcttataaaaatgtgactatagtttgtgt<br>tgttgtattattatttttgtaataattataataatattttttgaagatctgaacttcaatatttgataatacaataataacatttgaatagctcatctct<br>atagagtaattcattacttcaaagtacaaaatcggaggaagctgcatggcatattgaaactcctgtgtttatctgcactaatcacttcctggtaccattg<br>tgctcaatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	393	70	NA	intergenic
0	chr2	183958227	183958554	1000269	0	-	pAlu2-184213921; 5056; Ya5ACA937; RIP_Alu_chr2_184_01	TACTCGTGCAGCAAAATCCA	ACAGCGGAGTGAACGTATCC	SINE	Alu	Ya5	catgttggtcaggctggtctcaaactcccaacctcagtactgcttcattaccactcccaatcacaaattctactgatggttaatttgtaggctgagatca<br>caaatcatcatgaaacacaggtggtattctagagtttccttgtgatacaactctgttgagtaggcttcaattctgttgtacttgcaacatttgaaaacta<br>aatggtaagatgacttgcaagtagctgttgaataatgaatgatgtggtatagccacaaggatacagtaattaatatttaagagtgacaggctcacctccc<br>tgggaatggagcagaaagtccagcacaatgagtggctatataaaaagattactcgtgcagcaaaatccagaagctaaactctagt<font color="green"><u>AAAAATCCATAAACA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATCCATAAACA</u></font>actgattcgtcaaataattaatttccttcctttatttagtgtacaaagtatttttgg<br>gtctacagtgttttgaaaagggatacgttcactccgctgtttttgtatgagacccacttctacacattttcttgctacttgtaagtagtaagtacaaccc<br>ctcccaaatgttggggtagcatcactaatctgattagtagagagggttcagatgactgaggggtcactaatctgatgagtcagggcccagaacatgcact<br>gggtcatggtttgctagaggttgaggttattgggccttcaagtcagcactctgaaggatggctgtctcttctattttctgtcccaaactttttcacacct<br>cctctacatccccaactgtgtcatcagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr3	124719448	124719751	1000270	0	+	pAlu3-124517886; Ya5ACA1011; RIP_Alu_chr3_124_01	CGGTCCCTGACCATAGATGT	AAGCAGTCAGTGTGCAGCTC	SINE	Alu	Ya5	agtcctttaactccagcaatgatagcccagagaacaatattctcagcaattggtgactgtggccccaagaaaagagctggggcctactcaacccacagtc<br>cgcccccaaatctccaaatgcagtatcccaatgtgcccacccaacactccagaggggagaagatttaccactgacagaaaggtaactgaaatgtcaaaag<br>aacatgaaactggcaatatattttgtgaaatgtcatggttctttctgttctatgacagtgtaataattgcaaaaatttcaaaaggtggggaaaaaaagct<br>atgaacaccatctcttggaccagaaatatcaaaatggtgacctacggtccctgaccatagatgttctgtttgggcttgtacagtgcttt<font color="green"><u>AAAAATATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAATATTTG</u></font>aatcagtttttaaaaattaggggatttctcattttaaaaatctagatttctgccttttctcaaaaaaattagattttgcactact<br>gaatctgtctggcaatctctagctgagctgcacactgactgcttgtgtgagatggcatgcaccctccagtcaccatgcttttcttccatgttcttttaaa<br>atcctgtgggacagacctctgccgccagtagatagcctctgctacagattgtaaagtgctacacaaatgtcatgcaacatatttgaaaactctaaagttt<br>taaaaactttagttatttaaaagtgttatttaaaagtctgattagtttttacacttgaggctctgaacatacttttctttaaggcaatgaccttggccaa<br>agat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	500	185	NA	intron:PTPLB:NM:198402:4/7
0	chr3	23061856	23062138	1000271	0	-	Ya5ACA1052; RIP_Alu_chr3_023_01	TTTCTTCAGGAGCTCTTTTG	CTCAGCAGAAACCCTACAAG	SINE	Alu	Ya5	ctgagtcttggttctttatccagcttgccactctgtgtcttttaattgggccatactatgccccaatactatgcccttttagttggggtatagtattgtt<br>atgtacgaatttgatcctgttatcatgatgctagctgattactttgcagagttgtttatgtagatgctttatagtgtcactgctctgtgtacttcagtgt<br>gttttgtaatgaccagtaacagtttttcctttccatatttagtgctttcttcaggagctcttgtgaggcaggcctggtggtaacaaattccctcagcatt<br>tgcttatctgaaaaggatcttatttttccttcgtttatgaagcatagtttggctggatatgaaattctgagctggaaattctttccttt<font color="green"><u>AAGAATGTTGA<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAG<br>CCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC<br>CCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATGTTGA</u></font>atattg<br>gcccccaatctcttctggcttgtagggtttctgctgagaggtctgctgttagtctgatgggtgtccctttgtaggtgacctagcctttctctctggctgc<br>ccttaacagttttttctttcatttcagctttggagaatctgataattatgtgtcttgaggatgatcttctcatggagtatcttactggggttctttgcat<br>ttcctgaatttgaattttggcctgtctagccaggttggggaagttctcatggatgacatcttgaaatatgttttccaaattggttccattctcccttctc<br>ttttagctaccccaatcagttgtagatttggtctttttacttaatcccatatttttcagaggttttgttccttcatttttctt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	493	199	NA	intergenic
0	chr3	126972106	126972403	1000272	0	+	Ya5ACA1063; RIP_Alu_chr3_126_01	CCCTTTATGAGCAATGCGAT	CTATGCCCAGCATTTTTCA	SINE	Alu	Ya5	aacacttggggtcagaccattcgtggtggtggtgggaggggcgtcctgtgtattgtaggatggttagcagcatctctggtctccatcctctaggtgccat<br>cctaccctcccagctatggctaccccagatgtctccagatgctttcaaatgctgtgggacaagggagtggtacatgagcaaaaccaccccagttgagagc<br>cattggtctacacttgtggaaatgtttgagggtgagagtgtcgagctcgggtccctgctgtaccctttatgagcaatgcgatcttggaaaattaatacga<br>ctccaggggccttagttttctcatctataaaatggagataaatgagatacactttcataggaaggttatatgggatttactgagataat<font color="green"><u>AAGACAGTACA<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GACAGTACA</u></font>tgaaaaatgctgggcatagcatttatttatttttatgttttttaaagacctaatcttactctgttgcccaggctggggtgcagtggcatga<br>tctccgctcactgcaacctccacctcctgggctcaagtgattctcctgcctcagcctcccgagtaggtgggattacaggtgcccaccaacacacctggct<br>aatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctaaggtgatcctcctgccccggcctcccaaggt<br>gctgagatcacaggtgtgagccaccacgctgggctgggcatagcattgtaacacagacaaagcacaaaatacttgggcaatatctttttacatttggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	466	157	NA	intergenic
0	chr3	49469292	49469609	1000273	0	-	pAlu3-49348609; 22534; Ya5ACA1134; RIP_Alu_chr3_049_01	TCCACCTACCCAAGTTTTGC	GACAGCGCTCAGTGATGGTA	SINE	Alu	Ya5	tgctggagacctgtagctttctggaaagaccttccacagagtcccattggcaattttgagcccaaattccacaagcccacacactttcaaggacatgcaa<br>ggatgtccagcctcctgcaggataaattaagccccaccctcaccctaccctaagcaacagggacctccatgtgagaaggccacatggaggaggagttggt<br>caagacttaccagtctcctcctctctcctcgacccccatagatactctcacttgtgaaggttcctcttccacctacccaagttttgcccaccccactcaa<br>gaacaacacccccaagccttcctgacatctgactcctcattgtctaggaaacctcaagcttctagagggcaatgattgcccttgataat<font color="green"><u>AAGTTACCATC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTTACCATC</u></font>actgagcgctgtcctatatctttggcacacgatatctcaccatgccttccagcaaccctctgtcacagtta<br>ttattggccccacgttacagatgagaaaactgaggcccaaaggttaagtcacttactaaaagtcccatagccagtaagtggccaagctatggatctgtgc<br>ttatctttgtaacctttactgggcctggcccagaataagaattccactaatgcttgctgaatgagtcaatgaatggatacaattccatcaaaactatagc<br>taccaggacctatccaaccctagggcccaggacacagaggccttggagccatgtaaggggcttccagaccagtccaggaagaacaaggctaggtttctgt<br>ccctctcccaccttgggc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	475	146	NA	intergenic
0	chr4	184540698	184541003	1000274	0	-	Ya5ACA1172; pAlu4-184888050; RIP_Alu_chr4_184_01	CTCTCCACCAACAAAGAATC	TGCTAGGATTATAGGCATGAG	SINE	Alu	Ya5	caaccaaatggctttctgtttgtctttcatgatgaaattccagaatggtttccctaaggaatgaaacgtgaccaataaactcccagaatctcaaaaaaca<br>ccagtaaaaagccaccttccctgctgtcctcagcatttgacacatacgtggccagtgtgtgtcctcacaagcctttcctttgccctccatcctctgattc<br>tgctggaggaagtaccaagtgctttggagccatggcttcataaccagggtccagttgctccctctccaccaacaaagaatcttaatctttcttttttttt<br>tctgtgttgtacattttttattggtatggataacttattaaagtaacaaatctgaaaacacattttgcttttgctggtggtgg<font color="green"><u>AAAGAAAGTGCTATGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAGAAAGTGCTATGTT</u></font>aggccgggtgtggtggctcatgcctataatcctagcagtttgggaggcggagtcatatggatcatgaggtgaggagt<br>ttgagaccagcctggccaagatggtggaaccccgtctctgctaaaaatacaaaaattagtcagccatggtgatgggtgcctgtaatcccagctacccggg<br>aggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcgcaccactgcactctagcctgggcgacagagcaagactcca<br>tctcaaaaaaaaaataaaaaaattaaaaaaaaaaagtgctgtgttagagaggatctaagagaaaccagaagtcatttgcaaaaaataggcatatgatata<br>gtctgg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	499	176	NA	intergenic
0	chr4	95717996	95718303	1000275	0	-	Ya5ACA1197; pAlu4-95891648; RIP_Alu_chr4_095_01	TCCATAACCTGTTTGCTTTTACC	TGCAAGCCACACAGAAGACT	SINE	Alu	Ya5	tttattttcagagtaatcaagtttttattgtcctaatatctagacacttgaaatcaagctatttttaaatacacccagtttgcaaatgcaaagcagtaac<br>ttgcctgaaaatgatgcaaaatatgtagtaatctcttttctcctgaattttgcacagtgctggacagcaggcatgtgcttaataaacactgccaattgat<br>taagaagccatcataaaggctctataatactgcctagtttcagtttaaaaataataagctttaaatcatttcaagttttatcaccaaagctgtgcttata<br>aaacacaaaacttaagcttggtattttcagatgttttaaatgcagtacttttccataacctgtttgcttttacctctacaactttctattaa<font color="green"><u>GAAGAGTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAGAGTT</u></font>ttttatgagatttcaagaagcactagtagaaaagattttagttaagacacttccttcaatggatgtttttctactgaacttgga<br>atttaataaacatggtaaacttctgttttagtcttctgtgtggcttgcatttgacagacagcatctttctttgcaggatatctactctgattactcgaaa<br>atctattgtcttaaaataaacatactaaaaaaaaaaaaaaaaaaaaaagattacgaccaaacactcctgaacactccatactgtttctcttcctcacatg<br>aaagaaacaataacattcttttttgaaggatactagttttcctcaatatatatatatatatatcagaactttagaaagccacccacaacctcaagaccgt<br>atgtacag	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	498	182	NA	intron:PDLIM5:NM:001011515:5/9
0	chr4	100289328	100289627	1000276	0	-	pAlu4-100462978; 12480; Ya5ACA1202; RIP_Alu_chr4_100_01	ATCAGCTTTGCCTAAACCTA	GAACCTTTTCTTGGGGTCT	SINE	Alu	Ya5	ggcaagcatgaaaagtgaaagtagtgaagcgcttgcccagccatacaaggccagcatagagctgcagtaaaagcaaaggcatcaagctggaaaatgatga<br>gaactatagcttttccatacctggcaaaggggatcaggtggattaatccaaagcacacaatggcaaagatcttgcaaggctacttccatttttattatac<br>cccagggactctaacctcatgtgcctagtctctaacctgaatatcagctttgcctaaacctaatagaggacaccaagatggacccaacttaccagagggg<br>ccaatgagtgttgtgcagactgaatttccttggcattaggtaacatcttaaggtccttttatagtgtccccagaagatgatgct<font color="green"><u>AGAAAGGGGTCTTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAAGGGGTCTTTTC</u></font>aagatccagaccccaagaaaaggttcttggatctcacccaggaaggaattcaaggtgagtctcagatttctgtgagaagagata<br>gtttactgaaagccactctgtcacccagtaaagcatcctcaaaatgaaagcagaggaatgcactgtctttaagtttttcttatataggggtcttgcctat<br>gtaaagattaaactaagctgtgcctatgtgcaggtgggctgacagcatgactaaatgtattattctactgatttaaagaaaactatccttgatatcttaa<br>tgtgtaagtccatcgaagcataactatatcttgaaagcatatattgttataggtgttgtaacatctggacttttctgttgtaggactttgtccttgcagg<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr4	111602671	111602981	1000277	0	-	pAlu4-111776324; Ya5ACA1217; RIP_Alu_chr4_111_01	TTTGCCATTTTCTTGTTTGA	TTTCACCTGGTTCTTTTTGA	SINE	Alu	Ya5	catctactcaaagaacccacagatttcatcacgagtatgaattttctcctgagagtcaaggtcaaaactatgcctacctgtgtccacttgcatattccac<br>caacaattcagttggtctaaagctaaagagtatcactccccacagaaacactgtagctctgcactccttaccatgtttcatttctccatcagcattacaa<br>tcattttcctcagtatcaaccaagaccttccctctctctcacagacggctagatatattataggtgcttgtcaatttgtagcttctctttctcatctctt<br>ggcactttgtataggttattttgtatagctttaatttgccattttcttgtttgaattttaaaaatccagagcagcaccgattaat<font color="green"><u>AAGAGATAGTGTGAG<br></u></font><font color="red">TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGATAGTGTGAG</u></font>ccatagccatatgtgtaaatataaactttcttagtagccacattaaaaattcaaaaagaaccaggtgaaaataa<br>ttttaatattatggtttatttaacccaatttatctgtctgaaatattattgtttcgtgtgctcaaaataaaaatatgtacttaatataaaagttaataat<br>gtattttacatttgttggataacatcaaaacctagcatgttttatgcttataccacatctcacttaggactaaccatttcaagtgttcaatacgcacatg<br>tggccagtcgctgccctagtgaacagcacggctctagagctttaagactatcttatgcttgcttgtgttcatgacattttgtacaatgtgtagcacaaaa<br>atgtgtttggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	462	136	NA	intergenic
0	chr4	117470937	117471246	1000278	0	-	Ya5ACA1233; Ya5-MLS47; RIP_Alu_chr4_117_01	CACACACTATCATACCCGAAT	AGCAGTTCAGAACCATCCTA	SINE	Alu	Ya5	atcatacatttcctttttcaccatttttccaatattctacctaatatcttgtacatgtgctactactatgcaagttccatctgctactcgtcaatttgtt<br>gtagttgagattctaagttgcctccttaacatgaatattgcctttttactttgccattatcagttcttcagaatggagagtgttattctatatttataaa<br>ctatgggttattaatttttaattttttaacttttatgttggagagacctttctccgttgccaagactgagtacaatggcacgatcatagatgactgtaac<br>tttgagcttctgggatcaactgattctcctgcctcagcttcctgagtagctaggactacaagcacacactatcatacccgaataagctttta<font color="green"><u>AAAATTTT<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAATTTT</u></font>gtagcgataggggcttattacctaggatggttctgaactgctggcttcaagtgatcctctcaacttggtttcccaaagtact<br>gcaattacagggttgagtcaccatgttaagtctatgtttatttgtaatatttgatattatcaaattactggatatttataatacatatgtaatttcaaac<br>tgtagtaataaaatgaatacctgagtacataccacttaatttaagatcttatcattttaatatctcatcaaaatagtacaaaatactgtagagaaatgaa<br>agcataatggttttatcaatttttgtttctataaaaaattaccttgactgggtaattgataaacaatataaatttattgctcacagccctggaggctgag<br>aagttcaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15673711">PMID:15673711</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	398	80	NA	intergenic
0	chr4	120236701	120237003	1000279	0	+	Ya5ACA1242; RIP_Alu_chr4_120_01	GCGAGGGCCTTATAAAAGATG	ATTGGGTTTCACATCCGTGT	SINE	Alu	Ya5	ccgaacaaaactgtctgctttctacatgttttccacagtacccctacttgcttctacctaacattcaacatcttgtaatttcttatttgctaatccattt<br>cccctagtagactgtctatgaaaggaggcatgtagttcttaacccaactggaattttagtatacatttgttgaattaacagatgaaggaaaagcatacgc<br>tttactattaactatcctcactataaactaatatatgtcattgcctttgcggctaacctcagatgtcacaaacctacaatgctaaatctgtcatactaag<br>gatcctctgtgcttttgttaagtttatccaggctatggttaacttcagaattctctcctttccagtgactgcgagggccttat<font color="green"><u>AAAAGATGCTGCAATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAGATGCTGCAATGA</u></font>atttctttctttatttcatttgcttgcttattattcttattccttctacataaaacgaacaaacaaaacaaaacaaaagc<br>acaagctctggtggcaaatagacacggatgtgaaacccaatttcaccactgctagctttatgatcgtgaaaaattagtcttttagtttcagtttcttacc<br>tataatacttacatccatatcataggattgtcaaagaattaactggtacatatcaaggcctcctggtacatagtaggatgttggtaaatatgaaacctat<br>taaatctcttttttctcttacccctttctcataactcccattattacagcctcaaaatgcttaccacctgattattcagtacacgagctgcttctcatat<br>ttt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	471	151	NA	intergenic
0	chr5	13948093	13948379	1000280	0	+	pAlu5-13927730; Ya5513; RIP_Alu_chr5_013_01	TGGCAGGTAGAGTAGCCAAAA	GGCTGTGTAGGAGGTGAGACA	SINE	Alu	Ya5	tattcaacagatgttaggaactcagcctttagaattcagaaatactaattattcaggcagacttactgatctttgcaaaagtgttttctaaataagcctc<br>aatattcagtgatgtccaggtcagtgcagccaagccaggttggagagcttcatccactttggccaagtgagggacaatcaattgctcaatggcagcaggt<br>atttttgacttcactctctgatattcagctagcatcatctgcaatgaaattggggttaagtaatcaattaatatctcacttctaatgtctgttaatatct<br>catgtcttatacaaaatgactacttttatttagggtcaaactgtagggctctaatagcctggcaggtagagtagccaaaacaataaaaag<font color="green"><u>AAAAGAAGAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA</font><font color="green"><u>AAAAGAAGAC</u></font>aag<br>gactctctccataattacaaattcctaatccaaaaaaatacaactgaagatgaacaagaatttaagactaacagtgtctcacctcctacacagcctaaaa<br>agggagaaaatctaaggccaagtaatttttctaaaccatgcagaaacacgggaatggcaccttcacctgctcatcaccaggcttgtttgttcctctttgt<br>acactgatacgacatgcgtgctgctcctctggggacctcttgtagactacacccatcacccaaaacatgtgggtcgccagaggtctacctcagccctttg<br>ctaggattataggccaaatcttgttgccaagacccaaagcacaccgggaaccagtattgatctcaactagtgtcacggctttgaatt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	58	436	139	NA	intron:DNAH5:NM:001369:15/79
0	chr5	65381805	65382128	1000281	0	-	Ya5ACA1292; pAlu5-65316484; RIP_Alu_chr5_065_01	AACCAATGCTGGGGTTATTAAG	TGCCCAGTTGAGTTCAGAAA	SINE	Alu	Ya5	tatgagtttgtttcactggagagcagagtgaggtgtcttgactactatcagtattaagagaaactgaatcagacatccgagatggagaagaacaattgct<br>gttattctgattgctattgtgtgtaacttcatctgataaagaatctgtttcctttgtatcatctgaaacaaaacaaatttaagattaatgataaattccc<br>caagaattgtgtgaaattcttttcagtgatgacaaatggcaattataccatcctggttctatatatgaggtaataaattatattgataattggaagcacc<br>cctgaaaattcagtcctaatacaaagattaaataatttttagatggtgatataatttttcaaaaagtaaccaatgctggggttattaagaattc<font color="green"><u>GATTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAATTC</font><font color="green"><u>GATTTA</u></font>gttactgacaaggtgatattattatgtactgttttctaaggtcagttaatttcaatgaatatacttttca<br>cccatttacaatttgaaaaactgataatgaaaattcatttacaacctttctgaactcaactgggcaagaaattatttcatacatatatggaattttttcc<br>catctactctaataaaaataagcaattcaatccacaaacatataatcaccaaacaaatcaaggaattttcaaaggtcagctctttcttaatgtttttaaa<br>acatttcataaacttgtttatgaatggtaaactctcagtatgtaaggtggttgtgtgtgtagcaattacatgaacagaaacagacaagtgttcatattct<br>ataataggtagtataacaagtagt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	499	169	NA	intron:ERBB2IP:NM:018695:19/25
0	chr5	78128461	78128756	1000282	0	-	Ya5ACA1335; RIP_Alu_chr5_078_01	GGCATGGAAACTAGAGGAAC	AAGTGATTCTCCTGCCTCAG	SINE	Alu	Ya5	aggttgaacctgttttgatggccaaggccagcagatggatgtcaatatccctatgtgaaatacaggagtggagcaccatcgaaggaatgatgtgagaagg<br>aagtgagaaggctgggctttgttactgtgcaggttcacctgggctagaggcactatggttggatacacaaaacaacagtctgggttagagataagattct<br>ggagtctagaatacccagcgaaatgttgggcatggaaactagaggaacgaaaacattgaagagatgaacagtgaaaaaagaataagcaaatgaggctgaa<br>aagaatggcaggtagaggccgggcgcagtggctcgtgcctgtaatcccggcactttcggagaccaaggcaggcggatcacaaggtc<font color="green"><u>AAGAGATCGAGACC<br></u></font><font color="red">TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCAGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGA<br>GATCGAGACC</u></font>atcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcgtgtgcctgtagtcccagctactcg<br>ggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagattgtgccaccgcactccagcctggtgacagagtgagactcc<br>gtcaaaaaaaaaagaatggcaggtagaaatgagactcccaaagatgaacccagatggagcattttctctatgccaggcactgcagtaagtgctttgcacg<br>cattgtctcacttagagactgaaaaggggaaggacaccttagaaagaagaaaatttcaaaaagagagaccctccttctgccttgatcatatttgtc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	597	287	NA	intron:ARSB:NM:000046:6/8
0	chr5	73684753	73685059	1000283	0	-	pAlu5-73687606; 240; Ya5ACA1339; RIP_Alu_chr5_073_01	CAGCCACAACAAAGCAAGAA	TATTTATGCAGGGCCTTGGT	SINE	Alu	Ya5	tcaatgtaatacaatgtataattagatgtttgcttgtttcagtcttccccattgcatttcagccaccacacagtcaggggccatatgtctgcttcattca<br>cttttatattcacagacatgcacaatgcctggagcctaagaggtgctcagtaaatacttgctgaatgaatgagtgacctttgaggaaagcctcattagca<br>aatatatttcttggccagttgaatccaagctcttgttttatattccagaaagaaaacctgcagattccattgatctggcatggagctggatgtctttcag<br>gatgaagagttttcattaaaacacagccacaacaaagcaagaaaaaagagcaattgatgtaagcatgccagtcaggttcacatgttaag<font color="green"><u>AAACAGAATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACAAA<br>AAAAAAA</font><font color="green"><u>AAACAGAATAA</u></font>aaagaaataaaaattgataaacaattgtaaatcataccaaggccctgcataaatatgacttgctattatgcataatacaata<br>catggcatttttgtcttggaacctgtccaatgtggtttattattggaagaattgggtgaatcttgttaaaacacagctttacctgaaatttgatccctag<br>gtgtgaacccagaggacaatcttatggggattttccaattatggttttaagtaaggagttgtggaattctcatttcatcctcttcaaaatttcttgcttt<br>aaatgaatgagtagactgaattattctccttttaaaaaacaattgttttgcttggtgaagaccagaagaatcatgccagttctaatgcaggagagaaata<br>catttta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	450	132	NA	intergenic
0	chr5	53212699	53212990	1000284	0	+	Ya5ACA1360; RIP_Alu_chr5_053_01	GCAAACTGGCCAGAAATCAT	ACAGAAGATGGTGGTGGAGG	SINE	Alu	Ya5	ctgcttaataaaagtgttgggttgatacactgcatgtctagaaagttgtaaaacaactggagaaggtccagagacaaacctgacttgctccagattacag<br>agaatgacagctagacttactgtttgcattcttgtctctgccttttggtgagccgtttccattctaacaaaatcttctcatttttaatatttatatgtct<br>aatgatttaatatcataccacatcactctggccttcaaggtgccctggacacacatttttctgatttacctttacacagattatacgcaaactggccaga<br>aatcattcatttcaacatgaacctctcaggtaagaattgtggtcttacttctctctccagaaacagctttcttcacagactctgttt<font color="green"><u>AAAACCAGCTCCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAACCAG<br>CTCCC</u></font>tccaccaccatcttctgtaagcttgtccagacatggggtacatcattaggccaggtcttccagtcattcccttgcttgcaaagcaatcatttata<br>ggcgtttggtgctttgtctgacatctgtttgatgctggaactctagcctttgtctcaatgaatcacttgtcggtgaaagtccattgtaggctggatttca<br>cactttcaggaggggtttgcctgtgatggaagtgatcttaggctttttgaaataaccagctccctccgcctccctatattccatgaagaaacaggaaaat<br>gagagagtctggggaacctggtgcttattcaagcctcattttgatttgttcccttgggcctgagccaggttagcatctctggggactacatt	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	437	132	NA	intergenic
0	chr5	164298891	164299186	1000285	0	-	pAlu5-164301750; 3812; Ya5ACA1436; RIP_Alu_chr5_164_01	GCATGGAATCAGGACAAGTA	TCACATGGTGAAAGGTGCTA	SINE	Alu	Ya5	atagatttgaagcttgaagacatctttgtttctctgtacatatgtataattacttgaaaaaatatttagtttttatcttaaccaaagcccattatctagt<br>tggtagttatcttgtttgctctagatgtattacctgagtggcatggaatcaggacaagtatgtaatttgtagagccccctgttcaaaaataattaggaat<br>ctcaagacagtaacagtagagcattaaaccaagtgtggggtttgttatggtctgaatgttcgtgtcccctgccagactcatatattaaaatcttaccctg<br>ccaggtgatagtattaggaggtgggacttttggggaggtaattaggtcatgatggtagagccctcatgattgggattagtgttctt<font color="green"><u>AAAAAGACCTTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>AGACCTTAGA</u></font>gagttagctagcacctttcaccatgtgaagacatagcaagaaagcactatctatgaaccagaaagcaggcccccatcagacagtgaatct<br>gctggtgccttgaacttggacttcccagcctccagaactgtgagaaataaatgtttgttgtgtataagacactcaacttgtggtattttgttacaatggc<br>ccgaacgcactaagactgggtccttttgagcataaggcccttcacaggatttgtgcccatgaatccagtactgtatggaattcattctaccaacaccatt<br>gctccttttcagcctgtattgaagttcctctctttattgatctctttatgttgaggtgcctaggaccacaggccttaccctctgttctattcacac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	598	288	NA	intergenic
0	chr6	108372815	108373108	1000286	0	+	pAlu6-108266151; Ya5NBC54; 31139; RIP_Alu_chr6_108_01	GTTTATGTCAGTAGGAGTTTTCTCGTGTAG	TCATTGTATCATCTGCTGTACCTGT	SINE	Alu	Ya5	tgaaacccgtctgtactaaaaatacaaaaattagctgcaggtggtggtgtatgcctgtaatcccaagtactcaggaggctgaggcaggagaatcacttaa<br>acccgggaagtggcggttgcagtgagccgcgatcacaccactgcattccaacctagatcagagtaaaactcttgtctccaaaataaaaataaaaataaaa<br>ataaagaagtctagcctggaaatagaaattttggagtctgtgcattagtctaatcctaagcctgtcaccccacctgggttacaaattctaccaaaataag<br>actatgtttatactgcattcatcattgtatcatctgctgtacctgtacggtcaaacagtgaacgcttaatcagtaactactaaaactaaac<font color="green"><u>AAAAATCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGAACCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAT<br>CTA</u></font>aagcaaaaaaagagttggaatctacacgagaaaactcctactgacataaacagaattccaaaatgtaaagaatatctttcttttctttttttttttt<br>ttgttttgagacagagtctcactctgtcgcccaggctggagtgcaatggtgcgatcttggctcactgcaacctccacctcccgggttcaatcaattctcc<br>tgcctcagcctcccgagcagctgggactaaaggtgcacaccactacgcccagctaatttttgtatttttagtagagagggggctcactatgttggccagg<br>atggtctcgatctcttgacctcgtgatccacccccctcggcctcccaaagtgctgggattacaggcgtgagccaccgagcccagccgagaacat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	433	139	NA	intron:SEC63:NM:007214:1/21
0	chr6	62111954	62112258	1000287	0	-	Ya5NBC171; RIP_Alu_chr6_062_01	TCTAGAATTACAAGTGCAAGCCATC	CTTCTCATCCCTGCTAACATAACAT	SINE	Alu	Ya5	ctctcttgttgggggctaataacgcagctggtgaccttaagtggaagccaatgctcatttaccattctaaaaatcctaggggccttaagaattatgctaa<br>atccactctacaaatgctctatgaatggaactacaaagactggatgacaaaacatctgttgacagcatggtttgctgaatattttaagcccaatgttgat<br>acatactgatcagaaaaaaattttttttcaaagtgttactgctcattggcaatgcatctgttcacctaagagcgctgtttgagatacacaaggagattaa<br>tgttcttctcatccctgctaacataacatccattctgcagcccatggatcaagggataattttagctttcttgtttcattattt<font color="green"><u>AAGAAATACATTTTGA<br></u></font><font color="red">GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAGAAATACATTTTGA</u></font>gctgggtgcgatggcttgcacttgtaattctagatactcaggaggctaaggtgggaggactgcttgaggctataagaat<br>gagaccatcctgagcaacatagtgagactttgtctctaaccaaataaagaaaagaagagaaaaagccagagctcagcaaggctgctgtagacagactgcc<br>agatttttcctctctggacagggaatctctgaaaaaaaggcagcagccccagtcagagacttatagatagaccgccccatctccctgggacagagcacct<br>gggggaagggacggctgtgggcgcagcttcagcagaattaaatgtccctgcctgatggctctgaagagagcagcggacctcccagtacagtgctcgatct<br>ctgct	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	55	451	130	NA	intergenic
0	chr6	9371723	9371971	1000288	0	-	Ya5NBC197; RIP_Alu_chr6_009_01	CAGAAGTAAGATTGCTGGATCGTAT	CTCAATGAGATATCACCTCACACAT	SINE	Alu	Ya5	acataatgtcctccaggttcatccatgttgtctcaaattacagaattttcttatttttttaaggctgaagagtgctccattgtgtattacaccattttct<br>ttatccattcatctttcagtagacatttaagttgattccatacctctgtctgttgtgaataatgctgcaatacacatgaaaatgcaggtatctcttcaac<br>atactgaattaatttcttttgaatatatacccagaagtaagattgctggatcgtatagtagtttcatgtttgtttttaaatgaatcttcgtgctattttt<br>cataatttctgtactaatttacattcctactaatagtatatacccttttgtccacatccttgccaaaagtttgaagtcttttgtcttatt<font color="green"><u>GAAAATAGCC<br></u></font><font color="red">GCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGC<br>GCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC<br>CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAGCC</u></font>attctaatatgtgtgaggtgatatctcattgaggttttaat<br>ttgcatttctctgatatttaatgatcttgagcattttttcatatacctgttggccatttgtatatttcctttcaagaaatgtctgttctgttgaccattt<br>tttaattgagatttttttgtttgagttccttgtatattttggatattaaccctttattagatgtatggtttacaattttttttcatttcgtagtttatct<br>tttcactccactgattgtttcctgtgttgtgtgaaagccttttaatttgatataattgaatttttctctttttgcttttgttgtgtgtgtttttgtggtc<br>atatccaaaaaataattggtcagaccaatattaagaagattttaaaaat	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	204	NA	intergenic
0	chr6	124540622	124540928	1000289	0	-	Ya55572; pAlu6-124433954; RIP_Alu_chr6_124_01	TAAAAGAGGCGCAACGGAGT	TACATGGCACCTTTTTGCTG	SINE	Alu	Ya5	tctactaaaaatacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaagctgaggcaggagaatggcgtgaacccaggagg<br>cggagcttgcagtgagcctagatcatgccactgcgctccagcctgggcaacagagcgagactctgtctcaaaaaaaaaaaaaaaagttaatgtacgtcta<br>aatccatttggctgctgtaacaaaatactagaaactggggggtctgataaacaacagaaatgtatttctcacagttctggaggctggaaagtgtaagata<br>aaagtaccagaaaatttggagtctattgaagccctcttcttcctgtttcttacatggcacctttttgctgcatcttcacatggt<font color="green"><u>AAAATGGATGAACAGA<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAAATGGATGAACAGA</u></font>aactccgttgcgcctcttttataaaggctttaatcccattttgagagcttcctcctttatgacctaatcacttccca<br>aatggccccagctccttggaggttaggatttcaacatatagattttggggaaaaaaaaactttcaaccataacaatgtacgtaaaacacaatcatatctg<br>ctatgcagagatttctaaatagggattaatttttttgtatttcctattttcccaggataagtgtaataatgttatggactggtaatagactgatgccata<br>actatgttttaatgaggggttctgaaagtcaatacctgggccacaaaaaaggattccagtggtagtcatttacagaaatgtcacaggattataccagaag<br>tttaaaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	394	71	NA	intron:NKAIN2:NM:001040214:1/7
0	chr6	105674547	105674865	1000290	0	+	Ya5ACA1458; pAlu6-105567882; RIP_Alu_chr6_105_02	ACAGGCCCATAAAAACATGG	TTGCTTGACTGTTGTGACAGG	SINE	Alu	Ya5	gtcctcatgagggcccagccatgcacctaagtgctaaagacagttaggactgatgttccttcgttgtgcaaagatgtcacccaggactctggaaaagagt<br>gggtgaaggagttaaaagaggagatggaaatcatctatgagatgaagaaattatatttagatgatacataaggctgttaacttttcttcagccatctgaa<br>ttacctcaagtttccactgaggcaatgaaacttttacaatgacactgtaatttccttagcaaattcactttttattgatggttaaaaaattactttcgac<br>ctgtttaagttattattgaatataaaataatagtattcaaataataagccgtacttagttcatatgagtaacttacaggcccat<font color="green"><u>AAAAACATGGATTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGAAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATGGATTTGG</u></font>ttggaagccagtagttagagtgctgactgaggtcattttacttgattcctaatgtttcatttcta<br>ccaaatagacagtttatttaatgatttcctgtcacaacagtcaagcaaagtgtattttttatgagaatatcttataaagcaatataagaattttaaaagt<br>ttccataaaataaatttacttcttattaggcatttcagtagtgctatgcttgagtccttgtgaagaattttactgaagaaataaaagcaaatacggcaac<br>agaatacataaaaggacatctttcaggtcgagaattagactaagcatttgcaaacaggtttgccgtgattaccacaaggtactggatcagttcctccctt<br>tagattccaaaccaattct	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	474	139	NA	intron:BVES:NM:007073:5/8
0	chr6	12011439	12011734	1000291	0	+	17222; Ya5ACA1491; pAlu6-11965898; RIP_Alu_chr6_012_02	TTCCATTAAGTCAGGCACAAA	CCTGCAACTCCTACCCAGAA	SINE	Alu	Ya5	aaaacacctaggtatataaaatactgagaaatgtttttattttgggtgggcccagctcagctaaaactcaggaggtctaattttgagaaacaagggaaaa<br>acaaatacttacagattaacagcaatcttttacataaaaattttccacccccaagtgaaaataagtagcagtttcactttttcaaaggctttagactatt<br>ttgtttcctagaaatatatttattttcattaatagattattgggtctgacctccaactcagataaaaccattggattccattttttattatccctatgag<br>ttctatcctaagaatatgaaataattcaagattccattaagtcaggcacaaattaccctttaattatattagtagtctatcatc<font color="green"><u>AAAAGTCTTTAGAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GTCTTTAGAGTG</u></font>aaaaggaaaatacatgaatgtataataaaagccaagaaaatgtaaaactattcattctgggtaggagttgcaggcttctctgagttca<br>gagatatttatgtaagatgtgcttagaagaacaatgtctttttaagctttgcatcccatgacatattaacagtaaaatttaaaagggactcagtaatcag<br>caaaatgacttatatgagaatgttcacaacttgtttcatactaaccgaaacctggaaatggtccaggatggatccataggtgaatggattagttgtaata<br>tatgcatacaagggtatatgcatactcatcaataaaaagaaacaaactattgatacatgcaacaacatggatatgtctcaaaagcattatgctgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	455	143	NA	intergenic
0	chr6	134859054	134859355	1000292	0	+	pAlu6-134752390; Ya5ACA1497; RIP_Alu_chr6_134_01	GCAAGACTTCCTGAAAGGGA	TGCAGTTCCAGAAAAGAGCA	SINE	Alu	Ya5	tacagagaaacaactttctcactgccactactgcccactccaaacttcaggttcatgttgccccttcatttctttcggttaccatgttattagttcgtta<br>attctttaaatcatttcgcaaggatttactgtactgagcacctcttctgtgccaggaatgtgttaggtgcctgccgggaaggatttcaaaattgagggtg<br>gagacaggaaaatagacaacatctggttggcagcatgttaagaggtcagtgtaagatgggtgtagcctccgagagatccttaaaacatactgggggtact<br>aaaaacagatacttaaaacaggctggggcaggcaagacttcctgaaagggatgaggcctgcaccaagccagctaggtgaataggt<font color="green"><u>GAAACAGCAGTGGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>GAAACAGCAGTGGAG</u></font>gatgacccagcaaagggagctgccgtgcatagccatgacatcacaagacaatgtgctcttttctggaactgcacttttttgtt<br>tgtttgtttgttttttgagatggagtcttgctctgttgccaggctggagtgcagtggcacgatctcaggtcactgcaaccttctccttcctggttcaagc<br>aattcccctgcctcagcctcctgagtagccggaaatacaggtgtgcaccaccatgcccagctgttttttttttattttattaaagacagggtttcaccat<br>attggccaggatggtctcaatctcctaacctggtgatcggctggcctcggcctcccaaagtgctgggattacatgcgtgagctactgcgcccagcctgac<br>gt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	459	142	NA	intergenic
0	chr6	32611927	32611998	1000293	0	+	238419; Ya5ACA1508; RIP_Alu_chr6_032_01	TGCAGACAAACATGGAATGAA	TTAGGGAAGAAGGGCTCCAT	SINE	Alu	Ya5	ctgaggagaggacaggacaatcagctgcagagaggagccaccctctctgttgatagctgaacagatgtcggggcaacctggcagtggagaggagctgccc<br>actgtggctctctgagctgttctattgcttaataaagctcctctttgtcctgctaaccctttacttgtctgggtacctcattcttcctggacgcaggaca<br>ggaacctgggatctgcctaatgatgaggctaaaaaagctgtaacacaaacaggttgtagatgagcaatagagaatgtagtcaaatgcagacaaacatgga<br>atgaaaaagcaaaaataaatccatatcattccatgtaacaagaccattttttaaaagtagttttaagtggacagaaaaattgcag<font color="green"><u>AGAAAGTTCATGGAG<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAGTTCATGGAG</u></font>cccttcttccctaaagcagccttctgcttaatttctcctattcttaacatcctgcatcggtgtggtatacttgttaccactg<br>atgaagcaatactgatacttgttgttaactgagatccatagtgaaattagggatcattcttattatacagttctatgggttctgataaatatattatgtc<br>atatatccaccatttagtggaactgacccaagagtcccataggcagttttttttttttttaaataaacatagaaatggacacttctggtcttaaagcttg<br>aaacttacatttgttttatttgagttcctttccaaaaaaatattctcccaggcctctcaaaaagtatcaaagaactggaactcaccagatcgtctcatct<br>agt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	448	130	NA	intergenic
0	chr6	22335464	22335733	1000294	0	+	238761; Ya5ACA1516; RIP_Alu_chr6_022_01	GGCAATTAAGGCACTGTGGT	ACCATGTTCCCTGATGTTCA	SINE	Alu	Ya5	agtacctgaggcctctccagctatgtggaatggagtcaattaaatctctttcctttataaattacccagtcttgagtatttttttaatagtagtctgaaa<br>actgactaatacacatcttttcctttctctgtctgaacatagatatggtccaccctcttcttgccctttctgccaggcttttccactgctatggagaaat<br>acagagtataagatacaaaagtcagtagttttgagacagattacgatttaaataattaaattgccacttaggcaattaaggcactgtggtacattaggat<br>tataacctgaactcctgaatataaattttaaaaaattattttggcccctattttccaatggtatttcaacctttattagcttcccatt<font color="green"><u>GAAAAACTTGTG<br></u></font><font color="red">GGAGGCCGAGGCATGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGG<br>CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC<br>ACTGCACTCCAGCCTGGGCGACGGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAAAAAAGAA</font><font color="green"><u>GAAAAACTTGTG</u></font>tgcacagagaaaatgatt<br>cataactgcaatagccctgaacatcagggaacatggtaaattttccagaatgttggaagtattttactaaccaagtttggatcaggcttctatattaggc<br>aaaataggaagagcaccggacttggggtcctggtacctgccaccaagtagtggctttaaatgagtcacttttctgtagacattagctgcctcatctaaaa<br>agtaatgagattgaagctagtggcttttaagtgtcgtttaaggtacttacgtcctataacctgtttgtgtgtgtgtgtgtgtgcatctttacaaaagcag<br>atgagattgaatgaaaatttatgcctttctttttttgagtgcattatgtaatacactttgcagacttgtg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	467	165	NA	intergenic
0	chr6	51625323	51625634	1000295	0	-	Ya5ACA1532; pAlu6-51518660; 13202; RIP_Alu_chr6_051_01	CCCCTTGTGGCACATATAGAA	GCTTCATGATGTCCTGAGCA	SINE	Alu	Ya5	tcaggaccatgaaaggtaagaaaattgtatctatcaactcagaaggataaccagaaaagtcattcttgtcatacaaagtatacagaaggttattcttgag<br>ggggagagatcacagtgttctatatctttgcatatctcacagtgccttgaacaacatttgtacatagtagaagggttaacatatacttgttaactatata<br>gaaatatgttgatattagatttgcattttccctgtatataaacataatatatttaatttagaattctttagaattgactaaagaatttacttttttcttt<br>cagagtacaaaattgtccaaaatcattttatatttcaagtccccttgtggcacatatagaatatttggccttatctagcctattta<font color="green"><u>AAACAAGAGAGATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAACAAGAGAGATA</u></font>aaaaatgctcaggacatcatgaagcattcaatcaaaacatgaggctttttataggaactcggcttagtagcttt<br>gagaagaaggttgaagagagagtatctctgatttccaccccaacttcacctcaccccaccacagtaggtcttgttgagagccagttttcactaataaaac<br>ttacttgctttctgagttttccatgcaaatagaaataattccatcttctacagggtaaacatttcagatctggtggaatcgaaaagcaagaataatgaca<br>tgaataggagtgatctcttaattgggaaatttctgtattttcttgacttttctcctatagcctgcatttaagcattgcagaaaaaaaaatctctcacata<br>cctaactgggta	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	411	85	NA	intron:PKHD1:NM:138694:61/67
0	chr6	74477984	74478280	1000296	0	-	1968; Ya5ACA1570; RIP_Alu_chr6_074_02	AGAAAACTGCACATGTACCC	ACTGTGAAGCAGAAACATTG	SINE	Alu	Ya5	aactttaaaatacaatttttttttttttgagacggagtctcgcttcgttgcccaggctggagtgcagtggcatgatctcggctcactacaacctccgctt<br>tccaggttcaagcaatcctcctgcctcagccccccagtagctgggattagaggcatgcgccaccatacccggctaatttttgtataaaatacaatatttt<br>ttagagagtgaaataatagacattggagattcatatggcagggaggtaagggataagaaatgacttaatggatacaacatacactatttggctgatgttt<br>atactaaaagcccagactccaccactacccaaaatatccatgtaagaaaactgcacatgtaccccctaaatctataaaaataaaatatttt<font color="green"><u>AAAAACTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACTTA</u></font>aagtacgattttaaaaatacaatgtttctgcttcacagtttaatgtcactttaaggcaaaaaaactattgggtaaattcagtctacacagaaaa<br>cacaagtattctgagcagaacaaaaccaaacaaaaaatctcctttggtcccttacatactccttttatatttttctctcttatttccctttgcttacaaa<br>tatcttaataaatttgagtttcataaacaaagttttgttccattgtctaaaaaaaagcaggttaaacacaaacattgagtaaaaaaaaaagcaggtcaaa<br>cacaaacctactaaaagtaaaataaataaaatggtacactataaagcaaatgttaggttaagtacaaatgaaaaacccagagtcaagcaaggttctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CD109:NM:133493:2/33
0	chr6	32765931	32765932	1000297	0	+	Ya5ACA1571; RIP_Alu_chr6_032_02	CCTCCTGCAAGAACTAAGCG	TCCAGTCAGTAGTGAAGGCATC	SINE	Alu	Ya5	gcctgtctctggactcaactcaacatcccatgtcctcgctcagactatataactctagacccagcctgttaatatggactgcttgtattttttcagagaa<br>acctctaaaagaaattatcaatttcttcaaaacattaacttgataggttctttttaaatcaagtaatctgttgaaaaaaaaattatatgggtgctctaaa<br>ctatatcccctggataatctaacctgtaaatagtttgaacagttatcttttacagccagaataacaatactagttaataccagaggactaatctatgggt<br>agctcgtttcaaaatttactctgagagcttaaaagaaaatatattttgtagggaaacaaagcatatttttccaagatccagtcagta<font color="green"><u>GTGAAGGCATCTT<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GTGAAGGCATCTT</u></font>aatagtatccaggatcctcacatgtgaagaaaagtgaactaggtaacaaatgagaagacttacatacgcttagttct<br>tgcaggaggaaaggaactatctgggtatggaaaaggttactaggcaagattgtgattgaagagaaaggataatgataaaggggctttgcagaagctctgg<br>ttagaagaaataactaatagtaatgaatatgtatctctccaaccaatgagaagcatatgatgaggcagagtcacttgtctctggcagtccaagctactaa<br>gaagcacaaataaaatatatagtagcagggggagatgggaagggtgagagaatgtaggataaattaccattcaaactgccggtagaaatataaaattgta<br>aggaataaat	Other	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	425	110	NA	intergenic
0	chr6	168965076	168965382	1000298	0	+	Ya5ACA1574; RIP_Alu_chr6_169_01	AGGAGAATCACTTGAACCTG	GGATCAAGAAATGAAAATCG	SINE	Alu	Ya5	cctccaggcagatcgccatccttggcacgaccactgcaggtcatttcacactggggcccctgtggtcttgcatttcctctcccatctttgagcacattat<br>aaaaagttctttgttggccgggcacagtggctcatgcctgtaatcccagaactttgggaggccaaggtgggtggatcatgaggtcaagcattcaaaacca<br>gcctggccaacatagtgaaaccccgtctctactaaaaaaacttacaaaaaattagctgggcgtggtggtgggtgcctgtaatcccagctacttgagaggc<br>tgaggcaggagaatcacttgaacctgggaggtggaggttgcagcgagccgtgattgcgccactgcactccagcccagatgacagtgcgagactct<font color="green"><u>GTCTC<br></u></font><font color="red">AAAAAAAAAAAAAACCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA<br>CTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG<br>AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAGTT</font><font color="green"><u>GTCTC</u></font>tcttgtattttccactattgaatagagtgtgcttaggatgaaaatgacagagaatgcgattttcatttcttgatccgtcaatatttta<br>ctatgtgtctgggatgaagcactaattaccttaaaactgtaattaacttgtcaaatgtctttcctccaagaatcctgcaaaggtcttaaaggtcttaaag<br>ggtgagtaagtaatagtctgtgatataatttaaaaggaaggccacaaaccactttttctgtttttctttgatttcatggaatagtcttcattcttttctc<br>ctgtcctcctatttggatacatgtggctgccgtgagcctctagacgccctcccccacttccagcacttggctgacggatttgctggtctgtgacccctgc<br>cagaggc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	482	170	NA	intergenic
0	chr7	34815595	34815941	1000299	0	-	Ya5NBC28; RIP_Alu_chr7_034_01	GGGTACATGTGCAGGTTTCTTATAC	GCTAACTGATGAGAACACACAGATACATAG	SINE	Alu	Ya5	tgtagattgaagtctaatggagagcatttacttcactttcttcttggcagttatctttgttctgaattcgtgcctttttgttctttctctggctcagaca<br>aataacaatcaagcacattgtggttctttatgatttgttatttctacaaatgcatctcagcactaatgttgtgaaagccaccatagggaggaggttctga<br>ggaatgattagaaattgaaggctcgtaagaaagaatgagataatgtgctttgcagggacatggatggacatggatggagggcattatcttcagcaaacta<br>atgcaagaacagaaaacaaaatactgtatattctcacttataagtggaagctaactgatgagaacacacagatacatagaggggaacaaaacaca<font color="green"><u>CTGGG<br></u></font><font color="red">GCCTATAGGAGGGTGTAGGGTGGGAGGAGGGTTAGGATCAGGAAAAATAACTAATGAATATGAAGCTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTG<br>GATCACGAGGTCAGGAGATCCAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT<br>GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAATAC</font><font color="green"><u>CTGGG</u></font>tgattaaataatctgtacaacaaacccccatgacacaagtttacctgt<br>ataagaaacctgcacatgtacccctcaacttaaaataaaagttagaaaaaaggtttaaaaaaagaaattgaaggctcctctgaaaactaaaagaaaaaat<br>tatctcttgggaaaaggtgacaaatagagaaagagaaaaatggaagactagctttaagaaaaaaaaaatcgatcgtctacttagacaaaactggggtttc<br>tacctgtgatccatgaatttaaaattattaaggctggcaacaaacagaggaggaggtggcatcagagaaggatgaaaaagaaagcacacaatggcagaac<br>cctgtggagtggaacatcatggtgaggttataaggatcttggggctc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	474	191	NA	intron:NPSR1:NM:207173:3/9
0	chr7	38248167	38248476	1000300	0	-	Ya5NBC38; RIP_Alu_chr7_038_02	GTACCCTCTAATTTACAGTCATCTCATACC	GAACTTCTCTGGCTTGAAAAATCAG	SINE	Alu	Ya5	tactacactccagttgtgataaaaaagaaaaatgtattcttcacgaacttcaacattttgatatgcaaaaacatagtatataaattagatctacctgatt<br>acgtagaatcagaccaattatttctggaattgagggctcatatttttaataactgtcctcctgcctctctgttgacaggttttataaatattcatttaat<br>tacacacacacacacacacaccttgacaaataatggacatgaacaattgactagtacttgctctcattcttctagatgtcatcacaatggatcccaaaga<br>caattggtcaaaagatgcaaatggtaagcttttgtgtttttcctttcctcctgatcattttaagttttgaacttctctggctt<font color="green"><u>GAAAAATCAGGGAATGG<br></u></font><font color="red">GCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>GAAAAATCAGGGAATGG</u></font>attttgctaggttggatgctgcagaatggacctagtgatattttaaattagtccctctttttctaggagttgt<br>attaacaaacctaactactgcttcgggtatgagatgactgtaaattagagggtacagtgatatgctttcagttatttcaaaaaacagactttattcatcc<br>gtctgtcttttttttttttttttttttttttttttgagacggaggagtctcactctatcacccaggctggagtgcagtggcgcgatctcggctcaccata<br>acctccgccttactggttcaagcgattctccagcctcagcttctcaagtagctgggactacaggtgcacaccaccatacctggctaatttttgtattttt<br>aatagagatg	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	487	170	NA	intergenic
0	chr7	80840791	80841086	1000301	0	+	Ya5NBC194; RIP_Alu_chr7_080_01	TATTCTTATGCCGTTATGTCCTCAG	CCATGGAATACTACTCAGCTATGAA	SINE	Alu	Ya5	agaaaataaatattctctttacataggtattttaagaaggcaataagataagtgtacttggatactgggatgcacaggtttgtttgtttttttttccaat<br>ctttttttttttttaatttcaataggttttggaaaacaggtggtgtttggttacatgaataagttttttagtagtgatttctgagattttggtgtaccta<br>tcacccgagcagtgtacactgtacccaatgttagtcttttaaccctcacccacctaccaccttttccctcgagtccccaaagttgattgtattattctta<br>tgccgttatgtcctcagagcttagctcccacttataggagctaacatatagtgtttggttttctattgctgagttacttcactt<font color="green"><u>AGAATAATGGGCTCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCAGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>TAATGGGCTCCA</u></font>attccatctaggttgctgtgaatgccattatttcattccttttcatagctgagtagtattccatggtagtagtattccatatatatat<br>atggaatatatatatgtggaatatatatatatatatatatatatatatatatatggatacacacacacacacatgcacacacacacacatatacactgca<br>ttttctttatccacttgttggttgatgggcatttgggctggttctatatttcaacaaatgcgaattgtgctgctataaacatgtatatgcaagtgtcttt<br>tatatataatgactttttttttcctctgggtagacacccaggagtgggattgctggatcaaatggtaaatctacttttagttctttaaagaatctc	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	486	169	NA	intergenic
0	chr7	29239970	29240270	1000302	0	-	Ya5NBC203; RIP_Alu_chr7_029_01	CAGCCTGTAGAAGCTGGAAAAG	ATACAACAGTTCTGGAGGTCTGAAG	SINE	Alu	Ya5	tcaccactgactgagcctttaaaaatcccatgcaaacttaagagttataacctggggccaatggagggcttcagtgaggtttatgggccccattaaattt<br>tatgattttgtgcactgaattattttaaaagaatgagtctgatcgaggaaggtttagaatctgctgctttaagaaatggtaccagacattacgtcattac<br>cataatgaaaatctgcccttttttagtgtcatgatctcaaacaactaatattttcattcactcggtcactatatcagtttcttattgctgcagcaacaaa<br>ttaccatatacttggtggcttaaaataacacaaacttattatacaacagttctggaggtctgaagtctgaaatcgttcaaggta<font color="green"><u>AAATCAAGGTGTTGGC<br></u></font><font color="red">CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA<br>AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA<br>CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAATCAAGGTGTTGGC</u></font>agggctgcattctagggaaaagagaatccattttccatttcttggccttttccagcttctacaggctgccagcagtcctgggc<br>tggtggtctccttgcatcttcagggccagcaatggcccgttgagtctttctcactttgcatttttctgaaactgacccttctgtctccctctttcacatt<br>taaaggacccttgtgaatacatcagacccacaggaagatccaggataatctccttaatctcaaaaccagctgagagaaaccttaagcccatctccaacct<br>taattcccactagccacacaacctaacatgtttacaggttccaagtggaagtcgacatcttgggtgggagtgcatttttctacctaccactgttacttca<br>c	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	445	128	NA	intron:CHN2:NM:004067:1/13
0	chr7	113045708	113046026	1000303	0	+	Ya5NBC204; RIP_Alu_chr7_112_01	AAGCAAATCAGTCCTACCATGA	TATTTTGGAGAGTTGTAGGCAGGA	SINE	Alu	Ya5	agaaggtttattcctagacaggtaggccccaaaagctcatttttagaaagttgtgaagtctcagatcctatgaagagaagatagcgggaggaaggaagaa<br>aaacaataacaaacaaaggaatgatcctagaaaattgatatagatcttacgtatgtaaataggttgctgttttttttttctttgtagtttaagttgtcta<br>gctttagttctcagggctgtaaaaaagaacagcttagttttcagtgatttcaaattaggaaaaaaatgagggggaaaggaaaagaaagaagaaaaaatga<br>aaatattattttggagagttgtaggcaggaaaaaatagaattcagcacaaattgtagaaaacaataaaaattgaaaagcattaggc<font color="green"><u>AAGATTAGAATCTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGATTAGAATCTA</u></font>acaacaagtgtactatagttttgaaacataatttttctctgtcaagtttcccatttttattaaagac<br>aaatcatggtaggactgatttgctttattacacttggtcagattatttgtataaagtgcagaaaaaattattttttatataggctttttaaaattggctt<br>tgatggaattttattccatagaaggcatctcagataagacttttttaaagctgagctcagtcatggatttgtgccatcaaatacctatgagttgggtgaa<br>tttcctctactcttgaggttccaagatatacctggggctccgggacctgtcagaaagtgaccttctttacttaccacaggtcagaaaccctgtacaggga<br>ttctgtacatagaacatga	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	5199	186	NA	intergenic
0	chr7	7683815	7684129	1000304	0	-	Ya5NBC214; RIP_Alu_chr7_007_01	TGTTGTTGCAAAGGACAGGA	ACGTCCACATTCCCATGTTT	SINE	Alu	Ya5	tgaccaataggcatattaaaaaaacgttcaatattgttgatcatcagagaaatgcaaatcaaaatcaaaatgagatatcatctcaacccagttaaaatgg<br>ctttaatccaaaagataagcaataacaaatgctggcaaggatgtgtagaaaagggacctcataccctggtggcaggaatgtaaattagtacagccagtat<br>gaagaccagtatggagattcctcaaaaaaactaaaaacagaactactatatgatacagcaattctattgctgggtacatacccaaaagaagaaatcagca<br>tatcaaagagacgtccacattcccatgtttattgcagtactattcacaatagccaacatatagaatcaacctaagtgtctccatc<font color="green"><u>AACAGATGAATAGAT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAACAAAAA</font><font color="green"><u>AACAGATGAATAGAT</u></font>aaagaaaatgtggtacatatacacaatggaatactatttagccataaaaaaagaatgaaatcctgtcctt<br>tgcaacaacatagatggtactagaggagatcatgtaaagtgaaataaagcaggcacaaaaagacaaatttcacattttctcactcatatgagggagctca<br>gtttttttcaaattgaactcatggagatagagaatagaatgatggttaccaaaggcaaggaagggtagcagaaagagggaaataaaatggggatggatga<br>tgggtacaaaaatacagttagatagaaggaataagatctagtatttggtagcacaatagggtgactatagttaacaataatttattgtatatttttaaat<br>aactaaaagagtgga	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	500	170	NA	intron:RPA3:NM:002947:4/8
0	chr7	110329935	110330245	1000305	0	+	Ya5539; RIP_Alu_chr7_110_01	GTTGTAGGTTGGGGATGGAC	CCTTCAGATGTTCCCCATTG	SINE	Alu	Ya5	ttcaaaatataataatgatattaacagcctactattaattatagaaaaaataataagtgacagtaaattaggttttgtgaaacaaacaaaaaacagtaat<br>taaacccagatacctaaaagcctgtacacttaactaatggtccatactcctttaaaaaaaaaagattaattctgattgggctgatcctgatctggaaaat<br>tagaaaaataaaatataaatatgtcatgaatgataaaatatatatatatatatatatatagtatcaagggttcatgttggaaaaaccctgagttctttgg<br>tttgtctgaaatgtggtttaatggaaaccaccaaacgtaggttgtaggttggggatggaccgtagagagactttaatatcaatct<font color="green"><u>AAAGAGTACAGACTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG<br>AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGAGTACAGACTC</u></font>tattttgtaggcaatggggaacatctgaagggtgttaataaaaaaagtgacaagattatacttaattatccttc<br>tgaaactagcagcctgagggccaaatggactcagctgaacagccagcgactgatgaaagccattcttcaataaattcaatacaattaggttcccccagag<br>tggcacccttgcttgccacacacaccaggctaacactgattacggggcaatatttgagtatacgtggtatgtggctgtgtatttcttttgggtaaatttt<br>attgtggtaaaagcacttaccatgagatatactctctcaacagatttttaagtgtaggatacattattgttgagtataggtacaatgttatatgtcagat<br>ttctgaatttc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	417	89	NA	intron:IMMP2L:NM:032549:4/6
0	chr7	118131052	118131391	1000306	0	-	pAlu7-117884412; Ya5ACA1616; RIP_Alu_chr7_117_01	TGATTCCACCAGAATAGTGACA	GGACTTCCCCTTACCAAAGC	SINE	Alu	Ya5	tatttatataataatccataagtcttcagaaaagtagttgagaagaaccacatttcaatttgaccagttgcttctggatactggaatatgtggtaagact<br>aaacaattccaggggcatgagcctattgctgaacttcctttgctataaaaagagtcccttgattagaacaaattcagagtggaataccatgatggtggat<br>aaggcatttgtgagtgtatagatatggattttgacagaattatgggcaaggaaggcaaatctacccccagaatagttgtctatcctaaggggaatgaaac<br>tttgccttctgtacaattgaaagcattcaatgaaatgaacatatcattaaatatttagttgattccaccagaatagtgacatatt<font color="green"><u>GAAAGTGCAGTCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGAACGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAAACAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTGCAGTCTGG</u></font>aactctactattgttaaattaggcactcagctttagcagtagcag<br>aatgagctttggtaaggggaagtccacttagttgagtctacatataaccactatttctgccaaaatggccactttgttcatggggttgagtacacacaac<br>ataaaccagtgtctctggagaaagatgctggctgatatccataaaatatgtcattttttccacctgattgtccagccaatccattagaaactacccataa<br>atcaaagtatatccatacttctgatcattcccctttccaatgtatcactcaaggttctgtccactgggcagaactggctttactacaatactttagtact<br>cccgcttattgggttgtaaatgccagtgtctgaggtagaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	466	111	NA	intergenic
0	chr7	33865382	33865697	1000307	0	-	pAlu7-33606992; Ya5NBC209; 3791; Ya5ACA1653; RIP_Alu_chr7_033_01	CCTGCTCACTGCTTTTGCTT	CACCTAGGAAGGGTTAGGGC	SINE	Alu	Ya5	aacaaaaaaaatgaatggatattggtactttctaccccagggtgtgctctatgctggctcccaaagatccacagcaggactaagctttagattcccagta<br>gtaacttgcttgatgatgaacccttatcttcgctgcccttcctccctgcctcactttcccactctcctaccagtgtttcctgggatcacctccattaatg<br>tccttatcttagtatctgcttctggtgggacacagaccaagacatcatttgtgaaagagatcagtccttttgctacaagctctccttttccaaaataaga<br>ggtgaacttcgatggagtcactcatgtgaaaagtagttactatacatatcacatgtgccaaggcccctgctcactgcttttgctt<font color="green"><u>AGAAAGCCAGGCTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCCAGGCTCA</u></font>atcctattcttcatcttcccatagactaaagagaagtggggaataatgatgaaaagtcaaggctccaga<br>gtcagagcacctgggattggatcccagccctaacccttcctaggtgtgcaattttgaataattcattctccatgtctccaagtcttcatttctctgtctg<br>taacatggataaaatagttgtgtctaccgtaagagatttaaatgagatcacttatgcaaagcactgaacacatcatgtggtgcacagcacatgctcaata<br>agtggcagattctcttattgaccttctagtttcaatttaaatgccctctctttgcggaagccttgcctgacctaagagtaaggttttctcatatgttccc<br>acaagatccctattct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	447	116	NA	intergenic
0	chr4	133333504	133333809	1000308	0	-	Ya5ACA1251; RIP_Alu_chr4_133_01	GGCAGATACTGTGAAATGCT	AAGTGCTGGGATTACAGATG	SINE	Alu	Ya5	agatgtcttcaatgaggttaaatgttaaattatttactcagcacttatttctttattataagggacatttactaggcgagttccccattctccctttaga<br>gatacttaatatctagctaattcattactatttcagtaagaaaaattagaaatatttccagagattactttgggaaccaattactatccacacagtgcat<br>aaaaccatactgaattggagatgttcactccttacaattcagaaatacactatgtgataacattcagaggcagatactgtgaaatgctttgaggcctaaa<br>gattttatttaagaatatcatcatatatcataaatgaccaaaaaaattggtgaaaatgaatcatctcacttcatatgattgattctt<font color="green"><u>AAGAAAAAGATGG<br></u></font><font color="red">GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAAAAAGATGG</u></font>gctgggcatggtggctcacatctgtaatcccagcactttgggaggccgaggtgggtgaatcatgaggtcaggagttcgaga<br>ccagtctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaaaattagcggggtgtggtggtatacacctgtaatcccagctactcgggaggc<br>tatggcaggaaaatcgtgtgaacctgggaggtggaggttgcagtgaaccgggatcatgccattgcactccagccagggcaacagtgtgagattctatctc<br>aaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaagatgacaccattctccctacttcatctgcctccccaccttactctcaccaaaatgaatagatgca<br>aataaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	489	170	NA	intergenic
0	chr7	68100020	68100325	1000309	0	+	pAlu7-67860298; Ya5ACA1684; RIP_Alu_chr7_067_01	AGGACAGGAAACAAATCCCC	CTCCAGGGTGTTCCCATAGA	SINE	Alu	Ya5	aaaacaaacaaacaaacatgtaacccagaatcttttccccaatctttgccccaaattagtgcagaggagggtctgtagtacaaggctcagccacgtgagg<br>gattgttacaaggagacaggggggttctgatgttagggagactggcctagacaatcacattcttgtggaagaacaaggacaaggttgtctgccagtgtgg<br>gatgagcccgggtggatcacgatggactcagagctgctgatgtttaactgaagaaaagggagatggaggccaaacaaaacaaagggggctttctccaaga<br>agtgccaaccttctctgtaacactgccccaatgatcccacaaagacttatataggaggacaggaaacaaatccccacggtaaccgat<font color="green"><u>AAAAAGAAACCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTCTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAAGAAACCCA</u></font>aagccatcacttaccgggggaaatggcttccaatgctggttccttaaagaatgaacaagaacatccttgaatcctgtagcc<br>agctatctatgggaacaccctggagggcatgatgagaagaagaacccttatgagcctcatgccctagctggagaggagagaaatgcactcaccaacaaag<br>tgaatttacaattgcagacacactctgttacaggccaaataattgtgagctcctttctttttctttccttttcttttttttttttttttttttttttttg<br>agatggagtcccctgttgtccagtctggagcacagcggcatgatctcagctcactgcaacctctgcctcctgggttctgcctcaagctattctgcctcag<br>cctccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	470	151	NA	intergenic
0	chr7	25011139	25011455	1000310	0	+	Ya5ACA1721; pAlu7-24752784; RIP_Alu_chr7_024_02	GTTTCAACATGTAACCAATGAG	TCAGAAGGGTAAGCTCAAAG	SINE	Alu	Ya5	acccaggctggagtgcaacggtgcaatcttggctcactgcaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggatt<br>acaggcatgcaccaccatgcccggctaatttttgtattattagtagagacgggggtttcactatgttggccaggctggtctcgatctcctgacctcaggt<br>tatccatccacctcagtctcccaaagtgctgggattataggcatgagccaacccatccagcctggttttatttttaaaaaacatattttcttttatacaa<br>tgttcctaaaatgttgtttcaacatgtaaccaatgagaatatattaatgagacattccagtttaaaatgtcaatagtacttcaagatt<font color="green"><u>GAGAAACTTTGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAGAAAAAAAAGAAAAA</font><font color="green"><u>GAGAAACTTTGG</u></font>tttagatactggttgcatcactaaccaaatatatggctttgagcttacccttctgaatatcactcaatatt<br>cccacataaaaatggggagaataatacttatgtcacagtggtaatacctaaaactttttgaaagtactcacaatgggccaggcacaggaaaccaaaataa<br>ggagactgaagttcagaaaggttggtgaactcaagttttaccactagtgagtggctgagcaggattagaaactagtccaaatatgatcctttacatgcct<br>ctgagcctccagcttgaggggtgtatggctcccttgaccattcagttggaggggtcacttgcacttccatggcctccttgcacagagctgatcagaatta<br>cgcagatcattgacaac	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	470	141	NA	intergenic
0	chr8	126093294	126093295	1000311	0	-	Ya5ACA1736; pAlu8-125692903;1104685371245; RIP_Alu_chr8_126_01	CCTGCTCTGCACACTTCTTG;NA	GCTAGTCAGGGAAACAACAGG;NA	SINE	Alu	Ya5	aagttagtaacaagaaaacacttcaaatgactttccattgtctgtaagattaaatgttaatggtctgtctcccactctgacacccaccctatgctcctgc<br>cataggaaactgcttgagttccttgaaagtgccaccatttctcatcctttggcaatgttattccatctacctagaagttcctcatcttactgtccacctc<br>atgaactcccactcatcctccaggtccaaggtcctttgtttccactgtttcctgaacaacgtcctccctaactacccctcccatttcacaagcttccctc<br>cctgctctgcacacttcttgacactgaatctgtgggttttatttatcaacagtgttgtaaaattatctgtctacattcctaagtagaaaatt<font color="green"><u>GCCTTCTC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGCAGGAGAATGGT<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAG</font><font color="green"><u>GCCTTCTC</u></font>taggtcaaggtcagttttttacctgttgtttccctgactagcacaatacttctatacac<br>tcaatgttaataactaaatagatcataaaactaattttggtattaataatgcactaatccacagtgacaaactatctgtcccagaagttattcgtaacag<br>tataaatttaatcatatatttgtcatttggaatactgattcctttataaaataagcccaaaaaataatacctcgtttcttcactgatgaaggaggaagga<br>agcttgctggcatggacctcagatgagaattgtcagtggcttctaagaatggttctttcaggtgatctgcaataaatcccaccaacccaaagaaatgggt<br>cataacacttcaatttcaaagtatcacatattt	Other;Venter	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA;NA	60;NA	484;NA	141;NA	NA;NA	intron:SQLE:NM:003129:7/11
0	chr8	15045651	15045957	1000312	0	-	pAlu8-14776369; 3648; Ya5ACA1785; RIP_Alu_chr8_015_01	TCCTCTCACCCAGAAAGCAG	ATTAACCCATCTCCTTGGGG	SINE	Alu	Ya5	aaaaaagtgaatgtcaacctgctaagacaacaaactgtatagaactacttctgagcctgttgcatgaaaagccttcattaaactaggaaacgttaatatt<br>tgaggatatgcaacaataataggtcaacctgaggtacaaaaataacacagaagctgtagagctttgttgaaattgtgtagcatataacaaagatatatag<br>gatcaagtacattaaaaatgcataagaaatattttaagtctgaacctttgccaagaactgtgatatcatttgtggaatgcaattttctgattctgtatca<br>ccttttattacaccaacttcaaaatgccagaaactgatgtttcctctcacccagaaagcagaaatgaaacagatattttgctaagtt<font color="green"><u>AAGGTAATAATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AAGGTAATAATAG</u></font>attgaccacagataaataagcaattacaataactaaattataaggaaacactaccttactttagagatgcaaaaactgag<br>ccccaaggagatgggttaattctcctagtgtcagacatagtgagactaggagatgtgttaatagatgggttaaacccatgtgtttttgtaagccatggtt<br>ttcagaaagaagtaacttaaataaaacctaaatggtacttaactaatttccaatgatctggctattttcaaaacactttggaaaactggagcatgagaat<br>attataaatgcaaaatgtttctttgaaattctcttaaatacatttcattttttttcctgtgagagctactttgcttgagccttatagaaataattctgct<br>tttgagt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	55	479	159	NA	intron:SGCZ:NM:139167:1/8
0	chr9	21908070	21908371	1000313	0	+	Ya5NBC184; RIP_Alu_chr9_021_01	CTTGGATAGAGCTGGAGGTCATTA	ACCCAAGCAGTTTATACTGTACCC	SINE	Alu	Ya5	aaagtaatatgcagattccttaaagaactaaaagtagaactaccattcaatccagtaatcccactactgagtatctacccaaaggaaaagaagtcatata<br>aaaaagacacatgtacatgtatgtttatagcagcacaattagcaaatgcaagaatatggaaccaatctaagtgcccatcgaccgagttgataataaaaat<br>atggtatatatgtatatgccatggaatactactgagctataaaaaggaacaataataatgtcttttgcggcaacttggatagagctggaggtcattattg<br>taagtgaagtaactcaggaatggaaaacccaatattgtatgttttcacttacaagtggaacttagctataaggatgcaaaggcat<font color="green"><u>AAGAGTGATTAATGG<br></u></font><font color="red">GCCGGGCGCGGTGGCTCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG<br>AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA<br>ACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAGTGATTAATGG</u></font>actttgggggctcgatgggggaggtttggaggggttaagggataagagaatattgggtacagtataaactgcttgggtgacag<br>gcacactaaaatttcagaaattagcactaaagaacttacccatttaaccaaaaaccatctgtacccccaaaaactattgaaattaaaaaaaaattgtgat<br>tgatgtggtttcgctgcatcctcgcccaaatctcatttgtattttagccccaataatccccacatgtcatggaagggacctggtggcaggtaattgaatc<br>atggaggtgggtctttctcgtgctgttctcgtgatagtgaataaatctcacaagatctgatggttttataaaggggagttcccctgcacatgccctcttt<br>gc	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	522	205	NA	intergenic
0	chr9	26502939	26503242	1000314	0	-	Ya5ACA1861; RIP_Alu_chr9_026_01	TATTTCCACCAAGAGGGAGC	GGCTCGGTTGGTTGTTTTAG	SINE	Alu	Ya5	cttctgagaagtagttcgttgcttcatgttgataactcaattttgttctcaattcaaagccttccagtcgatatattttaatttctttttctctttttca<br>aacactttagctaactggagtcttgttttatccctagagaacaacttcaggtgataggtagatggcatggatacctgctgttagctttgtataagaagac<br>aacagaaatgggatcactgtgtatgcatgcccaaggtgaaatagatatcaaagtcagtttcaaatatttccaccaagagggagcagaaggagtagaaaag<br>ctatccatacaataaaaagaagaagaaaaggaaaggaaaaaaaaaaaaaaggagcacaacaatttccggtaaagttaatagaaattttt<font color="green"><u>AAAATGCTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATGCTTGA</u></font>atatatgtttctaaaacaaccaaccgagcctgtgaatttagataaacatgctcagatctcttaatgcccatgctggttgtgcatg<br>ttaggcaacttgcttccacctgtaaaccaaaattgtgaatctgaccatttcttaaaatatcagatacctgttaggttaaaaaaaaaaacaacctcacaaa<br>aattttacttttgaattctaagccaggatgaaatttaatcgcagttataaatcctccaagcaaggatttgtctggaattgccaacatcacccctagttca<br>gcaatgcaaatgacactgctataatataagaaataagaaagctttcagtatgttgtctaagaacttgagcacattgaaagtgatttatgagccagcagac<br>taaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	481	166	NA	intergenic
0	chr4	107639249	107639545	1000315	0	-	Ya5ACA1145; RIP_Alu_chr4_107_01	GGAGGTTTGAGAACTGACCG	CCAATCAAGCTTTTCTCCCA	SINE	Alu	Ya5	caggagttgaatatgaggcatgttgagtctaagagatattgctggatacaggaatatcaggtctggacaaaagatggtcctagaggtatgactatggaaa<br>taattaatatacggataatatttaacactgtgagtataaagaggaaaacagaaagaacataatatttcaaaattaagaagtcaagaagaggattcagcca<br>agaagactgagaagtagcaaccaggaagatggaaagaaaacaaaaagaatatgataccttggaaaccaagtgaagaaagtttattaagaaagaggaagtg<br>atcaaatgtgtcaaatgatgctgaccagccaagtaagaggaggtttgagaactgaccgtcagatcatggaggttattggtgaccttaagaagagcatttt<br><font color="green"><u></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u></u></font>gcc<br>gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaa<br>accccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaa<br>cccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaa<br>aaaaaaaagaagagcattttttttttttttactcaactgggagaaaagcttgattggatcagattaagagaaagggagaagaattacagacgaggaa	UCSC	<UL><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	55	719	400	NA	intergenic
0	chr13	38397638	38397639	1000316	0	+	HS2.25; RIP_Alu_chr13_038_02	CAGCTAAGAGATGGAATCAACC	ATCCATTAACCAGCCTCTCC	SINE	Alu	Ya5	agttttctcaaaaactaaaacagcagcaacaacaacaaacttaaaatgaactgccatatgaccctgcaatcccactaccagacatttaactgatagaaag<br>gaaattagtacatcaaagggccacctgcatccccacgtgtgttgtagcactatttacgacagctaagagatggaatcaacctaaatgttcatcgaaagac<br>aaatggatcaagaaaatgttgtatatacaaaatgaaacactattcagccataaaatgaaataaaatcctgtcatttgcagcaacatggacaagtctggag<br>gacattatgttaagggcaggcacagaaaggtaaatactgtgtgttctctctcatatgtgggagcttaaaaaaaaattagctcat<font color="green"><u>GAAAGTAGAGAGTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA<br>ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTAGAGAGTTGA</u></font>attgtaggtattagaggctgggaaaggtagtgggcaggagagga<br>gaggctggttaatggatacaaaattatagctgaggtaggaggaatgagttttggtgttctgtggcattgcagggtggatatggttaactatgatttattg<br>catattttcaaaaagctagaagagaggattttgaacattcacaacacaaagaaatgttaagtatttgaagtggtaaatatgctaattagcctgatttgaa<br>cattacacattgtatatatgtatcaagatattactcactctgtattccataaatatgtgtatatgtatcaattaaaagcaaaagaaaaaatatgtatccc<br>ataaaacaatagaatatgggccaaccttaatgatttgctt	Other	<UL><LI>Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL,Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9360633">PMID:9360633</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr1	65908309	65908631	1000317	0	+	HS4.14; RIP_Alu_chr1_065_01	AAGAGAAGATCAGTAGG	TATGGCTCAGAATACAG	SINE	Alu	Ya5	tgtgaactctaattaaaagaaagttaaattgcctataataatatgagacagagattgtagggcaaagaatattaccagggataaagagagaaatgccata<br>ataataaggacataaactccttaagaggatataacaattctgaatatgtatatgcctaaaaccagcttcaaaatacttgaagaaaaatggatagaattgc<br>atggagaaatagacaaatccacaattatatatgaagcactaataatcatttccaataattgataaaacacataaagagaagatcagtaggtatataaaat<br>atttaacatcatcaagcaactattcataattacatttataaaagactccacccaaacagcagaatatgcattttaaaggatgcacataaaac<font color="green"><u>ATTCACCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTGCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>ATTCACCA</u></font>atatgggctgtattctgagccataaaacaaatttcaatacatttaaaagaattcaaatcatacaaagca<br>agttctttttattcaatgggattaaactacattccaatcaccaaaaaaatggaaatttcccaaatacataaaaacaacatagtacggttataaataactc<br>atggacaaagatgaaatcaatagaaaaaatgtaaaatattttaactgaattaaagtgaaaacatagtatatcaaaacttgtgagatgtagttaaagtact<br>acttagcaggaaattgacggcattacgtatttaaattagaaaaggaagaagctgtcaaataaatgacctcatcttcaatctgaaagaaactacaagagca<br>catgaaatatgaagtatgctgaa	UCSC	<UL><LI>Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL,Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9360633">PMID:9360633</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr19	22559998	22560310	1000318	0	-	Yb8Sb23467; Yb8AC1805; Sb19.3; RIP_Alu_chr19_022_01	TCTAGGCCCAGATTTATGGTAACTG	AAGCACAATTGGTTATTTTCTGAC	SINE	Alu	Yb8	tcaatctaaccgaactaatatttagtgagaggttaatataaactaggcattggtgtatagatttgacaagatgaaaatttcaccctcaagtagatcccat<br>agttatcagaagacaaaaacataaaaataactgtaatattgagtggtatattccaatctagttttaaacattgtattggtgctaaggaagttagaaaaac<br>aaaccagacacaaaatctgcccacaagtgcttgtaatttacttgaagaacttaattctaacatagtttcatcaggtaattcaggtaaatattcactctag<br>gcccagatttatggtaactgataattattgataatttctttagatttgttgatattctacttgatgaaacatccaaattttactttatgt<font color="green"><u>AAATGTGGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA<br>TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAATGTGGCC</u></font>aaaagtgtcagaaaataaccaattgtgctttttataaaacaacaatgaacaacgcttgactaaagccaccacacaga<br>gcgactatcattatgggtaggttgtctttgaattttaaggtattaatcacagaagaggaaactcagtcctgagaattgcctattgggtggttaatcattt<br>ctgttagttacattttgactaatcatccatccatccatccatccatccatccatccatccatccatccatccatccatttatccatccatccagccagcc<br>agccagccagctaatatcccatcccactccacaggaatatggtgggcatctcaatattagctgtaagctgaagctggctcatataggcttctgagggacg<br>attgttaaatttc	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID:9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	60	494	171	NA	intergenic
0	chr19	56552458	56552459	1000319	0	-	Sb19.10; RIP_Alu_chr19_056_02	GCCAAGAAATAAAATAGCCCTCC	TGGGATTACAGGCATAAGCCAACAT	SINE	Alu	Yb8	ctcacgcctgtaatcccctgcctttgagaggccgaggtgggtggatcaccagagatcgggagttcgagaccagcctggccaacatagtgaaaccctgtct<br>ctattaaaaatacaaaaaattagctgggcgtggtggtgggcacctgtaatcacagctactcaggaggctgaggcaggagaatcgcttgaactggggaggc<br>agaggttgcaatgagctgagatcatgccactgctctccatcctggacaacagagcaagactccatctcaaaaaaaaaaaaaaaaagaaagaaagaaaaaa<br>aggattgtggtgggccaagaaataaaatagccctccaaaacagccaggtttcaatccctggcacctgagaaggggaaatcactt<font color="green"><u>AGAAACAGGGTCTTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGC301GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAACAGGGTCTTTG</u></font>caggctggccatgttggcttatgcctgtaatcccagcactttgggaggccgaggagagcagatcacc<br>tgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgtggtgatgcatgcctgtaatc<br>ccagctacttgggaggctgaggcaggcaaattgcttgaacccgggaggcagaggttgcagtgagccgagatttcaccactgtactccagcctgggcgaca<br>gagcgagagcccatctaaaaaaaaaaaaaaaagaaattagaaacagggtctttgcagatgtgattaaattaagcatcttgagatgggggcattatcctgg<br>attatttaggtgggccc	Other	<UL><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID:9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ETFB:NM:001985:1/6
0	chr19	61803373	61803676	1000320	0	-	Sb19.12; RIP_Alu_chr19_061_01	TTAACATCCCTGCAACCCATC	GATTATAGTCACCCTGTTGTGC	SINE	Alu	Yb8	aacttccacccaggggctctcagagccagattcgcctagagaaatgcatcttgattcaattctcctccagttctcctgacaagctcaggataaagtctca<br>agtggagagatatcttaacatccctgcaacccatcactcgccccttgaaacaaaagaaaagcaggagaataagatcctgtgatttgcaacaacatggata<br>aaactggaggtcattatgttaagtgaaataagccaggcatagaaagacaaactttgcaagttctcacttgtgtgagctaaaaattaaaacaaactcatgg<br>agatagagactagaatgatgaagaaacctgaggctgggaagggtagtggaagggtggggggaatgtggggatggctaattggtatt<font color="green"><u>AAAAAAATACAGAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAAATACAGAG</u></font>ggttgcagtgagccaagattgcaccactgcactccagcctggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaa<br>caaaccccaaaaaaacaaaaaaacacacacacaaagaatgaataagacctactatttgacagcacaacagggtgactatgatcaataataatttaatgat<br>acatttaaaaataactggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagacc<br>acggtgaaaccccgtctctaccaaaaatacaaaaaattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggaaggagaatg<br>gcat	UCSC	<UL><LI>Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9719639">PMID:9719639</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:ZNF71:NM:021216:1/3
0	chr1	195278290	195278586	1000321	0	+	FXIIIB; RIP_Alu_chr1_193_01	TCAACTCCATGAGATTTTCAGAAGT	CTGGAAAAAATGTATTCAGGTGAGT	SINE	Alu	HS-1	gctgagagcactgtgttcagttactttcttcaacaactacttattaaatgcctatgtgtcaaacattatgctggaagtgctacaggtgatgaaaatgaac<br>aagaattattacactcattacaaaatagttgtgaaaatgaagtcgaatagcactataatttacgatgtcactgttctacagaacatgagatttaaattaa<br>aataaatttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaa<br>acaggaagcatttcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaaatgtattcaggtgagttcaaca<font color="green"><u>TCTATGTGA<br></u></font><font color="red">GGCTGGGCGTGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACAT<br>GGTGAAACCCCATCTCTACAAAAAAAAAAAAAAAATAGCCGGGCATGGTGGCATGCACCTGTAATCCCAGCTACTCGGGAAAGCTGAGGCAGAAGAATCT<br>CTTGAACCTAGAAGGTGGAGGTTGCAGTGAGCAGGGATCGCACCACTGCACTCCAGCCTGGGCAACAAAAGGAGACTGTCTAAAAAAAAAAAAAAAT</font><font color="green"><u>TCT<br>ATGTGC</u></font>catttttttctcttgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaac<br>ttctgaaaatctcatggagttgaagatagaaaaatgagaatttcggtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtg<br>tagagatatgagtttgaggctctgcactagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcagaaagtaa<br>ataaaaagttacagtgggcatttggcagtctcccagtaatatcagagacagtcaaggagaaaaagctttaatacacacaacaaaccctctgtaaaga	UCSC	<UL><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID:8576959</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intron:F13B:NM:001994:10/12
0	chr3	179593740	179593741	1000322	0	+	D1; RIP_Alu_chr3_179_01	TGCTGATGCCCAGGGTTAGTAAA	TTTCTGCTATGCTCTTCCCTCTC	SINE	Alu	NA	attcagttaacattactcaaattggcaaaaaaaactagtcatgcacaagacaattattactaatgtgtttaaacatccttaaatacgttctgtttcactt<br>ctttcactttatttggataatcaactccactttaattttccaatactgctaatcagggttcaatccccaaaagcaagtaaaactgagatgtcccttaatt<br>atcaagagatcctactcttcagatctgctgatgcccagggttagtaaaaaatgtgtcagtactcagattagcaatacttgtggtttattttacataaaat<br>acttctccactggtatttcttcattgattgatatatgatagctgatatcagtgtacatcaatccaaaatatgctgtggtagatttttgctta<font color="green"><u>AAAAATGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA<br>AAATAAAAAAATAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGG</u></font>gaagaagtagatttcggcaggccaatgctgcccctgagaataaaaagaaaaaaagccacataa<br>catatggtaatcatctgtttgaagtcttcacactgctacaacagaaaagagaaatggaaaaaccataactccagagagggaagagcatagcagaaataca<br>cagaattctgtagttatatttacccttgtggcttttggcaattttgtgcatgggccaaaggatgaatgttatatgtgtagattaaatgatatccagatac<br>ctggtaaaacattatttcttggtgtgtctgtgagggtgtttctggaagagattcacatttgaatcagtagactgagcaaagaatatccatcctcaccaat<br>gtgggcagcatcatgcaatccattgatgg	Other	<UL><LI>Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8576959">PMID:8576959</a>.</LI><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR	NA	NA	NA	NA	NA	intergenic
0	chr6	12207408	12207684	1000323	0	-	HSC37; RIP_Alu_chr6_012_03	CTACATGATGTGGGGTGGGCCTGCT	CTTTGGGAGTCCAGCCCACTGTGAA	SINE	Alu	Ya8	aaagcaatctagattacatatctaaccacacttaagaaatcaaagcaataataacgcactgtttacaaatcctgcctgttaagtaaaggaatccatcctt<br>tctgacacctctaccatccatcatcgattcaataaacatttgtcaaatgcctactacatgcactaagaactgtagtaagtgctgtgctatgactgtgggc<br>aaaactgtataggggaagatgtgaggagaccccaggcagaggtgagagggtgagggtgtggagaagtgagttgcatctatgttaccacgttttttcttca<br>catataagggtcatgttaaacagttactaaatggctaactacatgatgtggggtgggcctgctgaaataaacacactcctccaggcc<font color="green"><u>AAAAACTCAGTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAACTCAGTGA</u></font>catttccctc<br>tggctcctgctccttcacagtgggctggactcccaaagcgtctgctcctcgggctcctgcagtccacctcccaccgcagatcaggccatgcatgaatgtt<br>actacatacatttgttttcattgcaatgcttttaagtcctcttcttgcccttcccactcatccacagaatcttatttgctacttccaacgcttttcttaa<br>ataaaataattttataccccattgcttggtggtcagggaaaaattctaagctacatccttcaaagtttgataaatttcctgcatatagcatagctccaca<br>aaataccctttgcacagtgaagcaataaaagaacaccatattgttggttaaatactttgttatctccatgctttgct	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:HIVEP1:NM:002114:3/9
0	chr1	114186965	114187255	1000324	0	+	PV30B; RIP_Alu_chr1_114_01	GGAAAAGAGTATGGCTGTCT	AACCCAGAAGTGGAATTACA	SINE	Alu	Ya8	aatcccagcactttgggaggccgaggccggcggatcacgaagtcaagagattgagaccatcctggctaacatggtgaaaccccatctctactaaaaatac<br>aaaaattatctgggcgtggtggcatgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcattga<br>gccaagattgcgccactgcactccagcctggcaacagagcgagactgtgctcaaaagacaaacaaataaacaaaaaacagaaaataaaaagtgttggcca<br>ggatgtagagaaattggaatccttgtgtactgttggtgggaatgtaaaatggcacagctgctatggaaaagagtatggctgttct<font color="green"><u>AAAAGAAAACTAAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>AAAAGAAAA<br>CTAAAC</u></font>atagaattaccacatgtaattccacttctgggttatacccaaagtaattaaaagcagggatacaaatatatatttgtatacccatggtcatcac<br>agcattacagcagccaaaaagtggaaggaactcaagtatccattgatggatgaatggataaacaaaatgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtg<br>tataaacatatacaatggaatattattcagccttaatgagtaagaaaattgtgacacgttacaacatggatgaaccttgaggacattacgctaagtgaaa<br>taagccagacacaaaaggacaaatactatatgattccacccatatcaggtacctacagtagtcaaattcatagagacagaaagtagaagga	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:PTPN22:NM:015967:11/21
0	chr12	12908916	12909215	1000325	0	+	PV1C; RIP_Alu_chr12_012_01	TAAGCCCCATAAGGAATGAGACTG	TGTTAGGTACTTTGCTTGGTGCTG	SINE	Alu	Ya8	gatctttggagaaaggcatggcctggcaggctctgcatggtgccacaggcctatctagctcctgtctctcctgcatttccttccctactggctgctttca<br>ctctttaagctcctgcccaccccagggactttgcacatgctattttttctacctcctctgctcttctgccctctttatttaggcaacttctactcatcct<br>tcagatcccaggtcaagcatatccttcttcagggaaggtttgcttgacatcgctgatggggtcaaatcctccttttagaggctatcaccacacgctgcat<br>ctgtattttataacacttgtcacagtattatatttgtctggttctttgattgatatctattactctcactagattataagccccat<font color="green"><u>AAGGAATGAGACTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAGGAATGAGACTG</u></font>aatctatttttactcatcattgtgttttcagcaccaagcaaagtacctaacacataataggcactcaatgaacatttgtggaataa<br>actgaggaataagtaaagacagaagatctaaaacatgaagggggctacagataggaaagggctggggagggaagaggagatattcaagagagggaaacga<br>aaccaatgaggctacttgtaagtgatcttgcagtgtaaatgagctgaacacaaacaaacccccaaagcggcagtccatagacccatagaaatggtgacag<br>tgcctgctgagttggttagcctaccccacacttctattcattgctaaaggcatctccacatatagataaccgctcactaaattttgcttttgctcaggaa<br>	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr5	9830994	9831290	1000326	0	-	A6; RIP_Alu_chr5_009_01	ACTACTCACCAGCAAAACACCTG	GCAGCTATAGCCTTATGAAAACA	SINE	Alu	Yb8	atgaatgtcactgaactaaataatcgattgtcaatgtagacaaaacaaccttgtattggaagaagatgccatctaggactttccaagctagagagaagac<br>aattcctggcttcaaagctttgggagacagattgattatcttgttaggggctaatgcagctggtaactttaagttgaagccagggctcatttaccatttt<br>gaaatcctagggcccttaacaattatgctaaatctactctgcctgctctgtaaatgaaacaacaaagcctgaatgacagcacatctgtttacaacatggt<br>ttattgaatattttaagcccaccatcgagatctactgtttaggaaaaaaagaaacttttttcagaatattactactcaccagc<font color="green"><u>AAAACACCTGGCCTCCC<br></u></font><font color="red">GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT<br>GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAA</font><font color="green"><u>AAA<br>ACACCTGGCCTCCC</u></font>aaaagctctgatggagatgtggagatgtacaaggagactaatgtcttcatgcctgctaacacagcatcaatctgcagcccatggat<br>caaagggtaattttgactttcaagtcttattatttaagaaatgttttcataaggctatagctgctatagatagtgattactgtgatggatctgggcaaag<br>caaattcgaagccttctggaaaggattcacccatctagatgtcattaagaacacttgtgattcatggaaagaggttaaagtatcaacattaactggagtt<br>ttgaagttgattccaaaactcatggatgactttgagggattcaaggcttcagcgaaggaagtaatggcagatatggtgaaaatagtgggagaactgg	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:LOC285692:NR:027112:4/13
0	chr8	42159064	42159065	1000327	0	+	TPA25;1104685157154; RIP_Alu_chr8_042_01	GTAAGAGTTCCGTAACAGGACAGCT;NA	CCCCACCCTAGGAGAACTTCTCTTT;NA	SINE	Alu	Ya8	gtggcaccagggcttggcatccccatcaggattcctaaatgataagagagtttaaggtttcctttttatcttcttattttttaatttttgtagagatggg<br>gtcttgccatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgctgggattacaggcatgcaccaccac<br>accaggccaggagtttaagattttcaatcccattttcagccacatcacaggccatgtaagagtagaaggagactcagtcaaccaatgaaaaccactgagc<br>tgggagggaggacaccgagttcatcttgaccttgcagcacacccccaccctaggagaacttctctttaactttgttacccagtcagtaat<font color="green"><u>GTAGTGTTCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>GTAGTGTTCT</u></font>aatctcatagggttgtcagacagaactgtgagctgtcctgttacggaactcttacaaatcattgcaataaagatgtcaggagaacagct<br>gaggactaaatggttacaggccaggacccttaacttgggatttaggttggaaaactggtagaccttgcttttcacaatatgtgttattctagcaagtgaa<br>gaggttggattagataatatccatgggtgcttcccacgcactgggtctgtcatgcaacttgagacattggatcttcccccgtctcacaccctaatcccac<br>gttctgccaagacctgaaccccccacccctgtgctacctaccggcagtaattatgtttgcccaggcccagtgcctgggcactggggttctgtgctgtgta<br>a	Other;Venter	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA;NA	NA;NA	NA;NA	NA;NA	Myeloproliferative disorders;NA	intron:PLAT:NM:033011:7/13
0	chr19	44791223	44791519	1000328	0	+	HSC4N5; RIP_Alu_chr19_044_01	CATCCTTGGCAACTAGTTCCACTCI	ATCATAGACACGGTGTCCTGATCAI	SINE	Alu	Ya8	tccaactcaacagcaggactgggtgaacacatagaaactgggaagctgtctccttcaatacctcaccttcccatgcatgacattaatttcctaaaatcag<br>gagagtctcatggttctgggacttaataaatggtgattggctttcaccaaagaaagcctttcaaaaggctcatggagaaggtgcacagcatcacaggact<br>tacctttgaatggcagacagtgttacttctaaggttttacattgatcaaggtgagtcatacagacggccctaatcaaaaggagaggactccacaagctgt<br>ggttattgtgactgtagtcatgaggggccatccttggcaactagttccactcagaactagttcccacataccgaaaacactaaccatgt<font color="green"><u>AAGGAATCTCA<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>GAATCTCT</u></font>gaaggcattacaattgcaaaaacaggctcagagtaaagtgcaatatcttatctgatcaggacaccgtgtctatgatgtgactacaaattatc<br>acttgcaatcccctgcaacatgtgcaccaagggggcacattatctgctttatactaatcaaagaagactgaacgagacaggaaaagtgcaatgaacacat<br>atattttagatgggcaaaaaaaaaaaaaaaaaaaaatagacagcagtcactaatccatatttttgctgaaaccaaccagaaaactatttacattttctct<br>gggaatgtttttctgtagcacttgtccccaccctccattctcagtttcttggagttcctaccaagacggcagaatgacagcccttttcccactataa	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr11	29704862	29705179	1000329	0	+	5F4; RIP_Alu_chr11_029_01	CAAATTTTCCTTCAAGAAAATAAAAC	ACATGTATGGTATGTAAAAATTTAG	SINE	Alu	Yb8	tctagtccacaggaagacctgaaccactgtcgccttcacataggttaactcggaaggcaaaggagctttgcctaagctggtggaagctatcaggacaaat<br>tgcaatgacagatacaatgagatccaccgtcactggggaagcaatgtcctgggttcccagatctgtggctcacattctcaagctcaaaaaggcaaagact<br>aaagaacttgccactaaagtgggttaaatgtatgctgttgagttttctctacataaaaaaaattaaactacaaattttccttcaagaaaataaaacataa<br>attattgtttttataaattacccagtttaaggtattctgctatagtgggacaaacaaactaaaacaaaatatgcctactatt<font color="green"><u>AGAAAATACTCTTTTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAATACTCTTTTTTG</u></font>ttgcatatacatgtagtccagttgaaatatgttacaaagagaataagtgtttcctaaattttca<br>cataccatacatgttagtttgccatacacataagatccatctatagatctccttaatttccttaataaattcagaagaactttactgaagtacatatttg<br>gtgccactatggatatcaaataatataatgctgcatgatgatgctgcataactcctacttattgaacatttataatgtaccaggtagtatgctaagtatt<br>ttgcacataatttaactcttgcaccaacactggaaagtaggtagttcaccccatttttgcaagaaaactgaatcttagtaaaccttagtaaagaaagtga<br>tacagaatagaattttaa	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intergenic
0	chr14	80162280	80162590	1000330	0	+	A3; RIP_Alu_chr14_080_01	CCCCAAAGATAGTCAGGTTCTAA	CCTCCTCCATTCTCACTCAATC	SINE	Alu	Yb8	tccttctttcctctttttcttttttcttccttatttcttttttctcccttctttcttttttctctttctttcctttctttctctctttcttctttctttt<br>tgttactcttgtacagaagaaatttttaccatatcagattagttctctcattcatgccaatatcaagtgagcctgtattactctttaaaaagtcataaaa<br>tactaaatggtaacactggtatattgaataatcagccccaaagatagtcaggttctaattcctggaatatgtgaatacataactttacaaggcaaaagag<br>actttgcagattttaaggatcttgagatgaaaaaattagcatgggttattcaggagatccctaaatgtaatcacaattgtccttatt<font color="green"><u>AAGAGTGAGACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAGTGAGACAG</u></font>gggagacttgaccacatagaggaaaatgcaatgtagtgacagaagcagagattggagtgagaatggaggaaggggc<br>cacaacccaaggaacatagacaaccactagaagctgaaaagggcaggagaaagaattctcccctcagagctttcagaagcaaccaatcctgccaacacct<br>taactttaggccagtgaagccaatttcagattcctgacttcaagaaaataaacctagaccaagatggtgaaactccgtctctactaaaagtacaaaaatt<br>agctagatgtggtggcgggcacctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaaga<br>tggtgcaccat	UCSC	<UL><LI>Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7714898">PMID:7714898</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	NA	intron:C14orf145:NM:152446:18/24
0	chr10	4624812	4625120	1000331	0	+	238920; RIP_Alu_chr10_004_01	NA	NA	SINE	Alu	Ya5	tgttgcattttggcaaatgatatatctgcatctaataagattatcacatgaatcttctcttttgttatgtcaagatggtggatttcattgctttatgaac<br>aaacacctttacattcctgagataaaggccatttggccatgacacatttttatttttacaaattgctggatttcatgttccaatttaacgttttgctact<br>tatctgtttaaactctatcggtctcagttttgacctctgtaaaatgcattaattgggctttaacaatggtatttttgtaaaacaaaaatttactttacaa<br>ttatttgaaatataatttttctatggtcttttccagttttaaattaattagtttgaactatataatattgatattcaatctctattgaac<font color="green"><u>AAGAAAAAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAAAAAGA</u></font>ataatttcatacagttcagcttaatagattaattctaagattttattgcagaaaatctctttctaccttgaaaacaggagg<br>taattttatgaacttgatttttaatcttagctggagtaaaattgtggtagaacatacactagctttgtaatcttgtgcatgttactgtataacgatcagt<br>ttatttgttcataaaatagggatagatagaatatctactttgtgggatagttgtcaggaagtgaactccctggcacatgccttacacatagtaagcactc<br>aggaaatcctaactatcttttatattatcattatgattatgaagtgctcttgtcctttagaatatcctggacaagatggttaatgggctgtacatctatt<br>attcaggta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	20172023	20172024	1000332	0	+	16184; RIP_Alu_chr10_020_02	NA	NA	SINE	Alu	Ya5	ggtgaatttgaaggcagctaaacacattgcaaatttagaagaaggatgtaggtcttaacttgtggatagacttttcctcgtatatgggttaatgaatatc<br>cttctctctcttgtgaattcttattaatataggccataaatggagctttcttttttgctctataaagccttcttatcttttgacgtcatgtttatattat<br>ctgatatgatgtaaacaaatctgacaggagtaactaaaaaaagcagtgcacagctaaatgtattcagtgtttattggctgatatgttttccccacatagc<br>ttcaatttaaaaatatatttttatcctttattacatatcctccttcttagtaatgcttttaacttatgtcatatttttttttctata<font color="green"><u>AAAATTTACCGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTTACCGGA</u></font>acaacgatctgccactgtatctacagcattttggtttcccaccaaggtagttttaaatcacatttagctca<br>attgacttatttatgaatactgtttgaaaacagtgtttatgtggtaaacatgcttttcattgctgcattttaaaagataaatgcaatggaatacttattt<br>ttttgtttcacaatttaaagctaaggtattaatttgataattattcaatgtcaatttatccaatatcgatttattctcatgttctttatttgtaaagttt<br>ttctgggtttccaaagagtctacccctgttatcgtaggattcctccataaggacaccatccacgggtaccactgagagcttctggctgcattaagatatt<br>ttctagtgaagaagaa	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PLXDC2:NM:032812:1/14	
0	chr10	25075198	25075288	1000333	0	+	12468; RIP_Alu_chr10_025_01	NA	NA	SINE	Alu	Y	gattgaaaccattctggctaacacggcgaaactttgtctctactaaaaatacaaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctact<br>caggaggctgaggcaggagaatgacgtgaaggcgggaggcggagcttgcagtgagccgagatcgtgccgctgcagtccatcgtgggcgacagagcaagac<br>tccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaactgaaacaggggctgagcatggtcgctcatgcctgtaatcccagcactttgggaggctaaggtgg<br>gtgattgcctgagtccaggggttcaagaccagcctgagcaacatagcaaggcatccgtctctaaaaagaaaaaaaaaaaaaaactgaagcagct<font color="green"><u>AAAAAA<br></u></font><font color="red">AGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAA</u></font>tgt<br>atgtgggaagtggctggtacaggagaaagttgggagcattaagcagatgaggtgagggggagaatggcctctataacacgctgttaccatcacttagtag<br>gtatgggattttgaggtaaccccacaaaggctaattcctcctaaaatccgtgtctgcagccttgctaacagcatgtgacaaacagcactgagcatagcca<br>gctgtagatgatacatctgagagtcttttgcaaacagatattctttttcagtataaatataattcttgattatagcaatgtataaaaatatacgatcaca<br>atctgtaaacaaaacaaagcaacaacaacaaaaattcacatgcatttggatggttactagcaaaaaaaacaaaaaacccagaaaataacac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	25138096	25138425	1000334	0	-	238040; RIP_Alu_chr10_025_02	NA	NA	SINE	Alu	Ya5	ataaaaataaaaaaaattttaaagccattgcacagttttctctgctgctggaataaatggatcttctgctagctctaattgccctagtaaaagaatatta<br>tctttgaccactgatcctaagaacccaaattccctgcaattcctttgctaaaggaaatccctgtcttctctccatttctggcccctgaatgctatttttc<br>ttacaaccaacaaagaagagtataaaggtgtttatggaaagagcatccctgtgagcccccttttcctgggacagttattcttttcccaaacagagaaggg<br>ttcttttaataatcaagttaccgatttattctaaactctcccctcccaactgatatttgaaggttggaatggcattaaaaataacatcacat<font color="green"><u>AGAAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGCT</u></font>aattatgttccacttcccacccgtccttcttgccaagtaatcttgggttttgccaccttgtt<br>tttttattttttgaacattaaaaaacagaagaagacgagggaggcagcagagaatgggaacagattaggctttaaaatagaactgtcaagatggttcccc<br>gcaggctctgttctgatctagcaattggtaacttcagatccacttgctttcacaagcgtctggatagcagtagattgagcagcaattaagggatagagca<br>ttaagccgaatgaacttacttttctagcattaactatggcttttcatggtttccagtgaaaaataaatttaaacaaacttataaaatatttacgtgaaca<br>aacaacatgtgaaaaaacaaatttatagaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	29142535	29142536	1000335	0	+	16220; RIP_Alu_chr10_029_01	NA	NA	SINE	Alu	Ya5	ggcccacgcttctcattacaaaaatatgttctgacactctgagtacttgtggctgggctggagaggcattgggccctgggatctcttgccagggagacaa<br>cccccctgcaactttgtgctaggtaatcttctgtcccctcttgtgtctcttctttccagtctggaccttcaaattggagggggtgaggagaaccctaaag<br>cccaggcatcgatggggaattctggagacaaaagctaattaaagttcatttcaaacctgtggggagaaaaattctagacataaacctaatgtaaagaaac<br>acataaaattttattggaagacaaaagaaaagtggaatgagcacacatatcatgtttttggatggtaagaataaaaattgtgaaag<font color="green"><u>AATAGATGATTTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AATAGATGATTTAG</u></font>attcaatgcaacctcatgaaaaattacaaagggattgttttagtccattttatgttgctataacaacaccacagactgggtaatt<br>tataataagcagaaatttgtttggctcatagttctggaggctgggaagtccaagagcatggtgccagcatttggtgagagccttggtgctgcatcatccc<br>atggcaggagttgataggacaagagagagggctagagtaagacagggaaggtgatccaaatgtattcttttatcaggaatccactcttgagataactaac<br>ccactcctgcaataacttcattaattcatttatgtagtgccctcctgacctaatcacctcttaaaggtctcatctctcaacattgttgcactgggcttta<br>a	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	33532661	33532935	1000336	0	-	Yb8NBC157; 265; RIP_Alu_chr10_033_01	TATGGTTCTCAGCCATCACG	ATTCTTCCCCAAAGGGAGTC	SINE	Alu	Yb8	aaagtctggattgcaggcctgagtggcatgtatgttatttgcacttggtgacttcttagttattactggtgtgtatctttgggccgttgaagaagttgaa<br>acttggctctgtttctccatgtgccgtaactctgcttggtgtttcagcaccattcagtgtcaaatttttactaagaaagcagcagttactgacacattcc<br>tactggcgagaagagaacaggccccagccaccaacatcttgtatggttctcagccatcacgagaactatccattatctcaagtcttgtaaagtgaaacgt<br>aatgccaaaaactgtaaaatattaaacagattgcaaaaatgagtaacaggctaaaaaaaatatctgaacgaaatttaaaggacttc<font color="green"><u>AAAAGCAGTCTTTG<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC<br>GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC<br>GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGCAGTCTTTG</u></font>attaatattgg<br>atacctttcaactgcaaattcaaagatatgggaatacctgtgaacagtggaatgcagtcctatgagagttcatgtaaaatgaccccgggacatctgagac<br>aacttctctcacacacctgccctggagagagggctcacagtttgagaagctacttacagagaaatggaatcactgtttttttagtttttttgtttttttt<br>taaaaaaacactattgcactaaatgtgaacgttgactccctttggggaagaattataatataaacttagcaaacatagtcaatactaagaatataaaaga<br>atttatgacaagtgagtgctctaacaccttgaaaatgaaagggaaaacgtttcaagcaaaatctctgtcttcaaa	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	712	423	NA	intron:NRP1:NM:003873:10/17
0	chr10	34724490	34724799	1000337	0	+	12346; RIP_Alu_chr10_034_01	NA	NA	SINE	Alu	Yb8	tcccatgtagctgggattacaggcacctgccacaatgcccagctaatttttgtatttttcatagagacagggtttcatcatgttggccaggctggtcttg<br>aactcttgacctgaagtgctccacctgcctagacctcccaaagtgctaggattacaggcgtgagccactgcgcccagccgatggttctcatttaaatcag<br>gaggaaatgaaatgatatggatgaaataaaaattgattccaaggtaatgaaacgttttaggtaaatgtttttctactaagaaaataatttaaaaaaagaa<br>atcaccaaagtaatgaaaccgtgaacgaatatagatgaggatcagttaactttatttttgaataacatatacaaggaaataactc<font color="green"><u>AAGAAAAACATCATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAAACATCATC</u></font>atggggaagataatattgtctctctacctatttgtctctatttctacatatcagcaggtagtcaactaagacagg<br>ggttggaggacgagctaattgtcattaatgcccctgattgaaaaacattcaacctagtctaaaaaatagctttgaaagtaagcagtgcaagattcttatt<br>ttaaaaaacttaagccagccatggtggctcacacctgtaatcccagcactttgggaggctgaggccggcggatcacttgagatcaagtgttccagatcaa<br>cctggccaacgtggtgaaaccctgtctctgctaaaaattcaaaaactagccaggcatggtagcatatgcctgtagtcccagcttctaggaaggctgatgc<br>aggagaattg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PARD3:NM:019619:7/25	
0	chr10	46508392	46508709	1000338	0	+	239115; pAlu10-46955146; Ya5ac1982; RIP_Alu_chr10_046_01	GTGTGTGGAGGTGCTTCAGA	GAGTCCTGGAATTCCTGCTG	SINE	Alu	Ya5	ggggtggcaccccagcattcctggctttctggggtccagataggctggcaagagctgtttttgcatccatttgcatcgtgaagactggcattttgatact<br>tcagctgtttgttcctgggagaattctgagcacagattccagaggtcacagtaagccttgcagcttgagctgaaagatgccagagccggagatgtctgct<br>ggcagcaggcagggttcattctggtgacacagcaacagatgcctggcctgggaacccagggatttcacctccaccagtgagaccacggggccactgtggg<br>gtgagggaaggagcgcttggagtcagagctctagaccttggtcaactcttcacctctgtgagagatggtgtgtggaggtgcttcagaagt<font color="green"><u>AAAGAATTCT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATTCT</u></font>gtggatgcaaagcagtgggattactgttagatcattagcgcatccagctgaagacaatagatgcagtagtct<br>tggcttacagccctctgcagcaggaattccaggactcacttcctactccatcccttttctctatcactgtgtcttccaccttacatggaaatcagcctgc<br>aagttcctctcctcgatgagatggcaagcgccttgcaggtgaaatccataccatcatggggcttgtgtcttacatgccatggacaggccctggcacaagg<br>agagagctccagggaagttttccatggtgggttgatggtaaaggtgccactcactgctgaatgtttggtgctggacaggagtccagcatgggaagggggc<br>cagggctcaggctcctgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15313610">PMID:15313610</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	470	148	NA	downstream:PPYR1:NM:005972
0	chr10	49587177	49587485	1000339	0	+	pAlu10-49809478; 239156; RIP_Alu_chr10_049_02	NA	NA	SINE	Alu	Yb8	ccaacttgcaaacactgctcctgtgtgcacttagagatgagctcttgtaagcttggggacttaaagggtcattttgagaataaaatactctaaaaatatc<br>aagtataaaccaaataatgcttagaatgaggaatctatccttacagacccatcatagaaggaagttctagatatagaattatgtgcctctacaaatacca<br>gtgaactatttacatctcttttatgtatgcagccttttaaaagagaagcagcaacaagtgaaaaaaaaacaaacaaacaacaccccccccccccaaacag<br>gctttagtgtgaaagtttgcatttcaacttgacgtctagctgcctgtatgcctttggcccagtttccttacttacctagagagaat<font color="green"><u>AAGAGCACACATCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAGAGCACACATCT</u></font>gtctgtgtggctgtaggagagtctgtctgagtcttgtgtataagaccccacagtgctgggcacacactagattgtga<br>acttgtattaatcacatctaaatctgaatcccctttttaaaaaggcttccttattttagtctgtttcagattcttaggggaaccattttcaatagaaact<br>gggctgagtgagtacagtaccttatccacagccagaatcatcaggaagtgatgtgacaggaatgttcacttctatttgttctgaattcagatctgctttg<br>ccacggcatggaggcagaagatctttcaaaggctgaagacagaaatgaagacccaggttccaaaaatgaagggcagcttgctgctgtgcagcctgatgtc<br>ccacatgga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:WDFY4:NM:020945:1/62	
0	chr10	54111216	54111520	1000340	0	-	2730; RIP_Alu_chr10_054_02	GGGAGGCGGAGCTTGCAGTGAG	CAAAGAGTGAACTAGAATCCAGATC	SINE	Alu	Y	cacacaaaaagtaacagaaacaagataaagtcctgaggaggatccaggtgtaggatcccatctttgctgacactaactttgctttcccatgttcaagttc<br>tataattcaataaatttttgagtaatccagttagatctggatttttggtaaatgtatcaaaaatgtttactattacaatataataatgtatatttagaag<br>ataatgaggttgaaagattaactattttcctcaaggacatacatgtagtaagtggcaaagagtgaactagaatccagatctttctgactgtgttgtcttt<br>gatcttaacaaataactgtattgtgaaagctcaaggacagcactgaagttttataaatgggagagacatttcagtgggatgggagttt<font color="green"><u>AAAAGTAGTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAGTAGTTGA</u></font>gtgtgctcttcccctcctcttttgttttgttttgtttgtttctgagacggagtctcgctctgtcgcccaggctggagtgcagt<br>ggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcgcccgccaccaaa<br>cctggttaattttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtaattcgcgcgcctcggcctc<br>ccaaagtgctgggattacaggcgtgagccaacgcgcccggcctgttttcttttatttatttagtttttcagccccctgtcctctcttacctttcagaaca<br>acttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr10	56187045	56187346	1000341	0	-	10911; RIP_Alu_chr10_056_01	NA	NA	SINE	Alu	Yg6	aaataatataaagcaatgaagggtcttacagtgagtttttcaggcatggctgtattcagagacccaataagacctcctgaggaatctgtttcttttgatg<br>ccttttgcttgcatcccatgatgtttggctttaactctcagtcaatatttgtccatgcagctatatattaaggctgctgacaactcaacctaaattcata<br>attgcaattactaaggaaaggagcccttctctctctctctgtctctctctcggcataaataaaactttaaggaataatctaattggtcttatttaggtct<br>cttacttgtcattgttggtgggcatagcactgtgactaccataaagaaggcaaatgaagtagttttctaaaggaaagccaatttttaag<font color="green"><u>AAGGTAGAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGGTAGAATT</u></font>ctgagcaagccaaaaacaggtgatatagacagaaatttctcatttcttagcagtttggcatacacatgtatgtttctaataaggaca<br>gttacaaattgtccccagctaatagaacacaactatcttaactacaactgaatataccccggctggaagcagaacattcataaagcaaatttttatattt<br>ctcctttatatctcatgctatcaaaagacatttactatcatgttttttgagacatatggtaatccaattgggagcttgcttcataaagccaagcatcctc<br>tgtcttcaaatacaataataggaagtccaaatactaatcacgttaagacacagctccctcctacttaggaatttcatttttattgacataaattgcactg<br>tg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCDH15:NM:033056:1/33	
0	chr10	57644640	57644641	1000342	0	+	3538; pAlu10-57867033; RIP_Alu_chr10_057_02	NA	NA	SINE	Alu	Ya5	acccgtgacagtattgtttaaatggtaatgtctgtaaattggttctgagataatttcaagtaagaggtacaatctcagtgatttacaaaacaaaaattta<br>tctgttcttcatgtgaaatccaaggcaggattcttagttgggtagttttcgtacttgctatcatttagataagcctaagggactttgtttcaatagtctc<br>aaaatccattcctaagcaaattattctagttccagttggtacaaatttgtcatagccttcatttctttgatggataatctctttcctcccatgtggggac<br>agtgttactttcatcaggctctgccattacctatcaattataatctagaaccaatgaagggagacaggggcatcttttcaggggaat<font color="green"><u>AAGAATTTTTTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAACCCCGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA</font><font color="green"><u>AAGAATTTTTTT<br>T</u></font>taaatgaagcttttgtatagtctccacgccataggaagcagctatattttagcaagggaaagtagggatttttaatctcatagagttcaaatgtattct<br>ggtgtttaaattattatgcatttatcttcctgtattaaaataagtatttcatgcaccccataaatatatgcacctactatgtacccataaaaattgaaat<br>tgactaaaaaaaacgaggggctgggtgcagtggctcacacctataattccagcactttgggaggccaataggacaggtcacctgaggtccagagtttgag<br>accagcctggctaacatagtgaaacaccatctgtaaaaatacaaaaaattagcctggcatggtggaatgcacctgtagtcccagctac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	78470918	78471223	1000343	0	-	54645; RIP_Alu_chr10_078_01	NA	NA	SINE	Alu	Yc1	actggctgccagcaagatgccttttaatacaagataagcacaagccgttctaaagagccacttcctgttggcggggtggcttcctctcatcttcctctta<br>cccatgcccccactggaagggaagcctgagaggctgcagccaaagacacacagcttgccctccttccctcagggaggcctgtgagatccctaagctccca<br>tagcggctcaacgttctccttgtaattcaccagtttctaaagactgactccattgtaagccggtagcagtggctcatgcctgtattttgggagcattttg<br>ggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagtctggccaacatggtgaaaccctgtctctaccaaaaatacaaga<font color="green"><u>AAGAATTAG<br></u></font><font color="red">GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAA<br>ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC<br>CTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAGAATTAG</u></font>ccaggcatggtggtgcacacctgcaattccagctactcaggaggctgaggcaatagaatctcttgaacccagggggcagagattg<br>cagtgagctgagatcccaccactgtactccagcctgggtgacagagcaagactgtctcaaaaaaacaaaaaagaagattcactacattgtgaaatccttt<br>cagagatgcctagcatgaagagggttgctgggaaaaccagctaaacttgactacttagaaaaaatgcatattttaatgaaatttggagcaagacctctct<br>gaaactacattttacttttgtgatactccttttgaaatttggagcaagacatctctgaaactaacattttaccttttgtgatattccttggggggtcaga<br>aaaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KCNMA1:NM:001161352:14/28	
0	chr10	84390753	84390885	1000344	0	-	pAlu10-84531890; 30847; RIP_Alu_chr10_084_01	NA	NA	SINE	Alu	Y	aatgtttcaggctcatcttatacaccagacctaggattagccatttgtctaagaaaccctgcttttttgtttctttacttgcttgtttctttacttgttt<br>ttagtgaaaaaatagcattgcaagcccataaatagtgtgggaagggtggtctgtttaatattttaactagaaatggaatatatgagacattatatacaat<br>aagacactttgtgaaagaaatacagacatacacaagcgcacagatcacaaatataagcttagaaaactgacaaaaaagtttctaaaatattcacaaagac<br>tttatttgggtagtttagtgattagcaacaattttattttcatatttatatgtatctgtatttttaaataagtatacattactt<font color="green"><u>AAAAAACGACAGACTG<br></u></font><font color="red">CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT<br>CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAACGACAGACTG</u></font>aaaaatttaaagaccctaggttttgtagtaagcattttatattatgagaaa<br>caaaattactgcaacaattcctatcaaatcgtacaagttgtcctcaaaagaatgtaagcatttgttaatatttgcaaggcactttaaaaataataggcct<br>atgaggcattatttcatttagtttatgacatattaataatgcaccttatttatctaccacttgaagtagagcttaatgaattaacataatatccaatcat<br>gtttaatgaagagctttaaaattactcatctaaatgattgtcataattttttaataataattatatttagcacttttattgcatttttttccttgaaagt<br>attttgcaaacacctagttaatacttaatacat	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NRG3:NM:001010848:2/9	
0	chr10	85616213	85616404	1000345	0	+	Yb8AC1538; 7773; RIP_Alu_chr10_085_02	TACTTGGCAGGGACCATCTC	AACATTCCTCGATGACAGCC	SINE	Alu	Yb8	agccagactttcggtggctccccacagctgaaggataaattacaagctttataacctgacacacaaggctccagaagatcaggtcctgcctgtcattccc<br>aagcacccctacagaaatgcattttggctcattgaactagacccatccctaagtagcttctgccccagtcagtgactccctcctccatgtgcccagctat<br>gagacacacaccactctgctctgtaatgactcaactacatctgtgtttctgctacttggcagggaccatctccccacatccactgtgcttatcacagtgc<br>cagctcatagaaggtagaaaatacagcacaaaacaaatcagtgtgacctcagagtggggctactgaatttattgacataaggaat<font color="green"><u>AAAAGAGACCTTGGG<br></u></font><font color="red">CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC<br>TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAGA<br>CCTTGGG</u></font>gacgagcttgaactttaccctgactgcttctttgatctcagcctataaatctttcatagaaattctcgtcttccccctcctcatggtaggagg<br>gtgacaggtgcaaccggctgtcatcgaggaatgtttatgaatgatgacaagaacccaggacttgaggagtgttacttttgggtgttattttttaactcca<br>gaagacagcacctatgaaaaatattttctgatttcactgcctctatgcataaataaataaatacgaggcaacttgatttagtggaagaaccgcagacttg<br>gttgaacagatttgatttcagattctagctctaccacttaatggggaagtagggtgataggctataaaattgagacattatccactagccca	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	483	276	NA	intergenic
0	chr10	99098282	99098598	1000346	0	-	pAlu10-99239422; 2521; RIP_Alu_chr10_099_01	NA	NA	SINE	Alu	Ye5	ccggctaattttttgtatttttagtagagagggggtttcaccgtgttagccaggatggcctcgatctactgacctcgtgatccgcccgcctcggcctccc<br>aaagtgctgggattacaggcatgagccaccgcgcccggcctcttcttgcacatttcttattctctctctctcccttacacacacacacacacacacacac<br>acacactctctctctctctctctctctctctctctctcattgggcatttattctgagcaaaggacttccaaaaagacatttggtgaggggtgagagatag<br>agtagtaagcaatgcaggcaggatccttgccttcactaagtttatgaggagccagaacaaataaataaaaaatttaataaaacacatgatt<font color="green"><u>AGGATAGTG<br></u></font><font color="red">TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AGGATAGTG</u></font>ctatgaaggttcggcatggatatcatgctgggtcctggtttgggcaagtgaagggagccatagcaggagggcct<br>cttggagtggcatttagctaagacctggaggatgagtaggctttagggtggcaaacaaccaaggctcctacatttccagaaacccgggaccaagggcagc<br>agtcacttgcagcttggaaggtgggctggggctggactcatgtggaagctttgtttgcataccaggcttactgtttctacttagactgtgtttatgtgtg<br>tgtgcagttggggttgggagcattgctgttaaaagtgcctcactttggctgggaatggtgactcacgcctgtaatcccagcactttgggaggccaaggca<br>ggcagatcacctgaggt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	105087530	105087826	1000347	0	+	4387; RIP_Alu_chr10_105_01	NA	NA	SINE	Alu	Ya5	ataattcagacttaagaatatcacatgttgattcttacaacaatcctttgagttgctattgtaacctccagtttagaaatacagaaactgatgatcagtt<br>cagagaagttacatcccaagggttacctactctgagttagtcttcaaaacctatactctttcaacataccatactgtctgtcttgggttatttcttttta<br>taatctactttacacatagaaactatagaacaaaaaggataagagtctatcttaagatcataaagctgggcacggtggctcacgcctgtaatcccagcac<br>tttgggaggtcgaggtgggtggataacctgaggtcaggagttcaagaccagcctgaccaacaaggagaaaccctgtgtctact<font color="green"><u>AAAAATACAAAATTAGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AATACAAAATTAGC</u></font>tgagcatggtggtgcatgtctgtaatcccagttacccgggaggctgagacaggagaactgcttgaacctaggaggcagaggttgca<br>gtgagtcgagatcatgccactgcactccagccttgacaacaagagaaaaccctgtctcaaacaaacaaacaaaaaaaccggtcaggtgcagtggctcatg<br>cctctaatcccagcactttaggaggccaaggcaggcagaccacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctacaaaa<br>aaacaaaaaaaaattagccgggcgtggtggcaggcacctgtagtcccatctacctgggaggctgaggcaggagaatggcatgaacccgggaggcgga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCGF6:NM:001011663:6/10	
0	chr10	107881538	107881539	1000348	0	+	12931; RIP_Alu_chr10_107_01	NA	NA	SINE	Alu	Yc1	ctgaattctagagagaagaataaatttactttaaaaagtacctggatcacaaaaaatatgtgagaaataaacagaatttatgaacttgtttagtatggaa<br>ggccatttttcatataataagtgcaataaaaagactaattttccaaaatattccttaggaatttattattttctgggtcttttaaggagggtaaatctgc<br>tttgtgtctgttaaagaattatgaattagtgtatacattatcttctcacgagtcatcagtctgttccacaagtagaatctttgatttggtgttatggatt<br>gagaagctgattggaaccacatagaacactgaagaatcgattggtgaggctgcctctgtggtcaacagagaggacaggggtgctg<font color="green"><u>AAAAACGTGTGCTCC<br></u></font><font color="red">CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCT<br>GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG<br>AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA</font><font color="green"><u>AAAAACGTGTGCTCC</u></font>aatactt<br>ctttatgcctttattgatcatgaatatgatatctggtgataaagattatgataatggtattgaactgctctcctttcagcaaggaaaagattaattccag<br>attgatttaaaaataatatattcttgcaggaaagcttatctttgacttaaaacacactaaaatttactgtattgctacattttttttcccagataagcct<br>tttgacggaactttctatagagaaatcaacaagttcatttggagaaactttcttaacatagtcacaataatactggtaggtgtcatgtcaataggtaaca<br>attactcatcatttactctattcgtctatgcatgtgcataaacttacttagtctttacagataccatctgaaatgtgt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	115499123	115499422	1000349	0	+	5030; RIP_Alu_chr10_115_01	NA	NA	SINE	Alu	Yc1	aggcttcggagtcaagacagaccagtctgatttctgtgtgtcacttactagctgcatgatccttagctagttatttaatctctctaaatttaaatttcct<br>cttttaaaattaggattaatagattttatcctgcaacaaggtagaattaaatgagatattctatgtaaaacaaaaatccccaataagtagtaggtattgc<br>catgccatataaactgttcggttgtgttttggttaagaggcagcagaactcaagagcatcttcatgacaggaaagcgcaattaacaaagtcatggaataa<br>ctcatctgatatttcagatgaacaggcgattgctttttgtgacaggtaattgataccttgtttacaggtcattggaaacaactttt<font color="green"><u>AAAAACCTATGCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTGCTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAACCTATGCTT</u></font>gtgtttcataggtatgtttgttttgcaagtttagtatttggtgtctgtgccagtttttgtttgcttttcagtttatatttcatggg<br>tttatctacagtacaaatagctttgttaggcttcttcctccaaagagttttgtaatactattggaaaaataatacaaaaaagcctagaatagggtgggtt<br>ggatgggtgggtaggtggagggacagacagatgaacaggttgctgatggaaagcacatctaactgtttcatcggtatcctttccaaaggaacacaagtct<br>tacagtaattttccctcttcccctttttggttaggtctctatattataacaataggctgtctggactttatagttcccaagtaagtggaaatcagcacaa<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	115851722	115852020	1000350	0	+	239100; pAlu10-14115992858; RIP_Alu_chr10_115_02	NA	NA	SINE	Alu	Ya5	gacagcaaaggccagtggctcatcagtgagaacatcatacctctgtcagaggggagaccctgagcagctcccgacacccacacagggctaggaattgacg<br>gtggcttagggtacacgtaagaggaacagcatccaccacaggacagtcccttcctcgcgtaccacccgggatccctgctccctgtcatcgccatactgtg<br>ttctctcagactgtaaggtccttgtcctgtctccctcacatggatcctttccagaccacgggcactctctcaggtcagcaggtccagctgcaatctggaa<br>tcagcatctaccgtgtggaaatgggagaggggacttggttcttaaaccaggggccttggcattagctacctttggtttttctccagaaat<font color="green"><u>AAGAATGATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAATGATT</u></font>agttagataattataaacaatggggggggggggtagttttgtcgtagttagcaaattacattgaatgtaacaaaatcttaaaccataaagc<br>aaaacgtgctgggtttctgcttcctgtggtgacatgacatgaaagcccagctctttttccaggaggacacttctctgtttacaagactgcttgagcaatc<br>ccattatcaactctctccagagaggatacagctgaggcagctcaaattcagaaccttatttttaaagaactaaaaaaaaattagatcctttgataagatc<br>actcaagtatagtccaaactagcctcccaaattttggagtgccagcaattatgttcaatatctccccatctgcctccccccaaaagaaccaattaatat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	118255315	118255622	1000351	0	-	17678; RIP_Alu_chr10_118_01	NA	NA	SINE	Alu	Ya5	ttctggaaggtattgttttctgcttgtttaaaaaataatacacttaggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggca<br>ggtggatcatgaggtcaggagattgagaccatcctggctaacatggtggagccccgtctctactaaaaacacaaaaattagctcggtgtggtagggggcg<br>cctatagtcccagctactcgggaggctaaggcaggagaatggcgtgaatctgggaggcagagcttgcagtgagccaagatcgggccactgcactccagcc<br>tgggcagcagagcaagactctgtctcaaaaattaattaaataaataaataaatacacttaatcaagaggccaccacattttgctt<font color="green"><u>AAAAATGTCATGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAAAATGTCATGAGA</u></font>atgtcaaaaacttgacgctactgctggagaaatgtttacacactatagacctgaaggaagatggaaaaagttttgct<br>gttcagttggcttctctcatgctttcagattcatttgagccaaggctgggttttggtttattacacgcttctgtgcctggtacttacgctgctattgtca<br>tctctgatttcccctctcactgaacaactttggagccactgattctttctagtgaattggggatgtaacaaacacaggaaacaaacacaggagtaacaag<br>aaattgtgcaaattaacgagctcaattgaagaataaacccacaaatggtgcgagaagacatcagctgagaaggcttgctactaagtaaaatgcttgctga<br>ggccaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	123479179	123479484	1000352	0	-	3107; RIP_Alu_chr10_123_03	NA	NA	SINE	Alu	Ya5	gattgcttgagcttgggagatggaggctagggtgagctgtgattgcctcactgcactcaacctgtgtgacagagcgagacctttctcaaaatacacacac<br>acacacacacacacacacacacacacacacacacactcgttgcaatgcctatttccctggttttcctagaggatttttaacatgctatttccacggtcat<br>gtgggtttcacaagctggccctccaagccctctgaacaagctgcctcttcgtgtgatgtgaatttagctgagggagtcactggattcttcatacaccggc<br>attttcctttctggaatgctgcctcctggattgtaagtacaaaaacacaaagtgaacgtgatgcaaacgcaggaaagaaatgtctttttaac<font color="green"><u>AAATCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAATCTTC</u></font>acaggagacatgctaagataaaagagcagaacactgaaggccccagtgactgaggggcccgacaagcacctcactttcgagcgggt<br>ccaggtagtggccgtcaagacactgcacccctctgcgctccaggatttctgcaacagtgaggcccctcctcaaaaggcagtttggttctcgcaacctcgc<br>gcaatgaggacagggccaggcattacccgctcttagtcctgagccattcactggctttgtgcccttaagaaagttcctactccggtcaggtgtggtggct<br>cacacctgtcatcccaacactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctcaac<br>taaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr10	128096476	128096776	1000353	0	+	pAlu10-128147416; 15057; RIP_Alu_chr10_128_01	NA	NA	SINE	Alu	Ya5	ttaattcagagatgagcttgggaaggaagagagaggacaatttcaccagcagttgaatgactgctcatcattccaatccagcctctgccctggaggcaga<br>accagatgagagatgtaaatctgtgtatggttcccttgcttctcaaagcatgaccatctcctcatgctgagtaagagtctaatattttaaaggaaatacc<br>tcttgtacatcacatctcccatccatgccaacttcatctggtgctcagtcgatctgtttcagagctggaggaagctgtctgggtgagctgacctgtacag<br>agatatgttagtctgtcatcaagatgacacttaagggactttaaatagtgattctgatatcatcgtattctaattgcacctgacttt<font color="green"><u>AAAAATGATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAATGATTACT</u></font>aacccccacccacctctggcccctataaaaaggaagtcagtccagagcctgcctgctgcctacctcccagggccctcctgagaata<br>ataagtgtggattgggcatgagttttaaatgcatagggaacatctgttcattagccaggggactttttcccttagaaaataaagtaatggagaaatctca<br>caaaataaaaaaggggccatcaagccctaaaacctagtctcttaacatctttcatgacacagttgtcttgaaaaccaggccttgtgggggagtggggagt<br>aattttctggagttccatgagcatttcaagagctacgcctataggcctaggtcccagaggcccaatatgcccagggcagagagaattcaggatatgactt<br>g	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr10	129080298	129080299	1000354	0	+	238615; 19840; RIP_Alu_chr10_129_01	NA	NA	SINE	Alu	Ya5	ctctaagatctgcaccatcttgacccacttctacctgggccacttctgaacaactcgggcctctgggcagaagccctgctgctagatccagttcactttg<br>tgtctccttgtaagctctcggtccctctcacctgggtctgtctgagatccctacccactctcctccccaaggccccatgcctgtctccacccttccgctc<br>ctgcagatagatagcagtctggtttctaataaagtggcctctggatcacagcgtgaactgcttcaaagatgcccaaacctcagggattctcccatctcct<br>ctgcaggcgatccaggcctctcacctggcatgaggccccttagagtaggaatcgagcctccagatgtaccctctcatcacccacag<font color="green"><u>AGAAGGCCAGATGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AGAAGGCCAGATGC</u></font>tccccaagcccttgcaccttcccatggtctgccccggcgtggaccggctgcttcttgctgctgtctcgtgtgacggctgccatgac<br>agctgccttcctgccttctgggcatatttcactgctctcaaactttcgtggcttttggagttcaccggcgaatcttgttaaaatccagattttgattcag<br>ctggtctggggtgggcctcgaggctctgcatttctgagaagctcccaggtgatgtcccagctgctccagggaccatccctgagtccccagggcctgtgct<br>gacttaagctcctgagagcagaggcagtggctgtggctgccacctctggatctccctctgagggagctgtgccgtggcctgggctccactccattttttt<br>	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DOCK1:NM:001380:38/52	
0	chr10	133299085	133299398	1000355	0	+	13306; RIP_Alu_chr10_133_01	NA	NA	SINE	Alu	Yb8	tggtctggggtcagagcctgcgactggtccggcacctgatgccactaggtactcatgctcttcaggtctttcctcctctaaaagtagaaaaaagaccaga<br>ctgtatcaaggaaaaaagcataggaagagaggaggagaaatgaactcaatcagtagccggcaaggtgcctggcacactgtaagcacctgctatcagcaag<br>aagcagcaaatctaaaggagagcagtgcgacccccgatgagggcagagcccctctccctgttgtgcagactttgcatgagctataacaaaaagcgcctta<br>catttcggagtgagaggactagagcatgggcctaatctatttttaaaatgaaaacatcattttaatgttgctattttcacaaat<font color="green"><u>AAAACTTGTATTTATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAA<br>ACAAAAAAAAAAAA</font><font color="green"><u>AAAACTTGTATTTATG</u></font>ggaaaaggtgtgcatgctttctcttttaaagatgaaaaatctctctttctatttgtagaagctgtgcacg<br>ggacgccaccccgccggctcctggaacccgaccgtccagagcgcctcattggactgcgctgagcccagtccacctgcaccactgccgtcctcctcgctcg<br>gccaccgttggttaccatgggaaccatgaccgcagccagcccccgaggcgagaaggcctcttcatcttgccactcgggtcggcctcccatttccatttcc<br>agagagctcgctgtcggctgcggggggctttccatggccctggtcagccctccccactggtggaaaccagtttccatagcaacaagaaggtgggcagagg<br>gcagaaggcagaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	4759112	4759408	1000356	0	+	540; RIP_Alu_chr11_004_01	NA	NA	SINE	Alu	Yb8	tgtaaatttacatatttaattacataactatatatgctatgtaataatactcagcaataaaacttgatgcatgaaataaaatggctgaatttcaaaagta<br>tcatgcaaagcaaaagaagttacatacagagactatatgtttccatttatataaaattctagaaaagattaaagtataggagtttacagctccagccagg<br>ggctgggggtagaaaagagggcttattttatacaggcataagagaatattttgactaatgaaagtgttatctattttgattgtggtgatggttgtacgac<br>tgcataaatctgatgaaactttgaattctgtacacaaaaaagggttaattattgtatgtataattttatctcagcaaacctgcctt<font color="green"><u>AAAAACTGATTGCA<br></u></font><font color="red">GGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG<br>GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC<br>CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAA<br>AACTGATTGCA</u></font>taatcaagtattaaactataattttaatattattttaaaaccattctgattatatagtgttgtataaaataccaccctgatgtggtttg<br>tctctgtgtccccacccaaatctcatcttgtagctcccataattcccacctgttgtgggagggacctggtaggaagtgattgaattatgggggcaggtct<br>ttcccatactgttctcatggtagtgaataagtctcccaagagctgatggtttgataaggggaaaccctttttgtttggaactcattctctatttgcctgc<br>tgccttccatgtaagacatgacttgctcttccttgccttccaccatgattgtgaggcttccctagccaaatggaactgtaagtccaattaaacctct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	5063545	5063787	1000357	0	+	238598; RIP_Alu_chr11_005_01	NA	NA	SINE	Alu	Yc1	tcccactgtttaaatggccctgaagtgtaatgctgaagtgctatcaagtttttccaattgcaaggaggccatcttgtgccttatggagaaaataacgttg<br>ctaggtaagcttcatccaaaaatgagttatagtgctgttggttgtgagttcaaagctgatgaacaacaatacagtttcctttgaaaaagaaggaagttta<br>tctagctgtatatgatgtcactttggaaaatgcttcagtagcatttatgatgtgtgataaaggtgtggaaaaatgtgtgttaaataaaatttatgagaag<br>ccattgttctgaagtgagctcctgcactaggtcccaacaaactaaaccaaaatggagtcacttgtgctaggtaccatgtaatcaaacagaaactct<font color="green"><u>AAAG<br></u></font><font color="red">GATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCT<br>GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAG</u></font>aatcacagaaatccccaaccagaccagtttttcctaaaaataagatagtcaca<br>ggaaacaatcagaaaaggcccagtctgtgctggcatgattaataaataccctctgctttaactcttaggaagaaattaaaagtaacttaatattgaccaa<br>ttttcattttgtgttattctgtttccttgttcctgctcaaccctcaacctggtttgcaaaaaacaactgttacaccctatccaatggaactccttttact<br>tcttttcttttctttttttgagatggagtctcactctgtcgcccagcctggagtgcagtggtgtgatctcggttcactgcatactccacctttggagttc<br>aagtgagtctctgcctcagcatcctgactagctgggactacag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	7673492	7673795	1000358	0	+	pAlu11-7675852; 228; RIP_Alu_chr11_007_01	NA	NA	SINE	Alu	Ya5	attgcattttcagacactgcgaacaagaaaagacgtagtgcatgattctccagaactcatcaggccctctcgactcacttggaggggcaatcactacgag<br>ctagcagggtgaactcagggttgagggggagactgccccctgttctctagttggcctgtgcccctctcccatgtggagtcagttgggccttgggagaggg<br>atccctgccactcacctaattcctatggggcctaagcttctacagaaggtggagatagtatgtgattaaaagtaaatggttttaccaggaatgtagtttg<br>gtttaagagctttataggtaagattaaacccagctgcattatctgtggcatcagagacgaatttcagccttagagaattagagccaat<font color="green"><u>AAGAATGGATGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAGAATGGATGA</u></font>agggaggctttctccacaaaattttcctgcaggatgagaaaaaaggattctttgttcagaatctagaaaatagttcccattcaa<br>tgatttaagaagaactgaatttgccatgatatttcaggattgtccaatccaaagtttctcagtcttgtcacaattgacattttgagccagaaccttcttt<br>gtgttcttgccatcctgcatcttttgtaggatatttggtagcatttctggcctctaccagtgacaattcctgcccttgtgacaactgaaaaatgcttctc<br>attcattgccaaatgtgtcctgagggttgggggtacaaaatcacctccagctgagaaaccacagaaacaccattccatttctgtttcttgtaagtaacct<br>gtct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	exon:CDS:OVCH2:NM_198185:11/15	
0	chr11	9751163	9751475	1000359	0	+	938; RIP_Alu_chr11_009_01	NA	NA	SINE	Alu	Yb8	ctttcttttgcctagtaaacctctgctcttaaactcactccttgtgtgtgtctgtgtccttaattttcttggcatgaggcaatgaacctcgggtattacc<br>ttagacaacaactcctgttcaaagtcaagagcttctaccaaaaagggagaggcttggcctgagagaaaatgcaccagggcagaaaatgtgagccatagaa<br>acagagtgctcaaagggctcaggcgagtattgcacactagttccaagagtcacgaattccttctgatattctttttcaggtcctgcttctggacaccatt<br>tatgtcaccctacataacagagagggtctctaaaagaaaataatatttatttaatagggctgtattagtctgttcttgcattgctat<font color="green"><u>AAAGAAATACCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGAAATACCTG</u></font>acgtcaggtgtggtggctcatgcctggaatcctagcactttgggaggccaaggtgggaggattgtttgagccca<br>tgagttcaagagcatcttgggcaatatagtaagaccctgtctctataaaaaaattagctgggcatggtggagcacacttgtagtcccagctactcaggag<br>gctgagctgggaggattgcttgagcccaggaggtcaaggttgaagtgagctgtcattgcgccactgcactacagtctgggtgtcatagcaagaccctgtc<br>tcaaaaaaaaaaaaaacaaaactataagaggttgaactggttcatggtttgcaggctgtaaggctgtagaggaagcatagtggcatctgcttctgggaag<br>gcctctggaatct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	14304901	14305202	1000360	0	+	pAlu11-14387378; 239025; RIP_Alu_chr11_014_01	NA	NA	SINE	Alu	Ya5	gatgcctaaattttattttaaataaaaagttatcacacatatcaaactcaactacacaaattgttatactaaaacatttcaggaaatatgtgctttctaa<br>cgctaatgaagttttagaaaagattgtaaatatacaaacataaaataaacaagtatcaccaattctgaaatttgttaaatcagtaaaagaattttaaggg<br>gtaaaagttctatatctttataccagctgacttgacaaaattaagagttccagtaagagcaaaatgttgtcctctatttgggagggggaggggacagggc<br>actgagcaatcaagcagttaaaactcctatgtcgtatcttaaatcacttataacatcaaaaagaaagtaaacatttcaatcctatt<font color="green"><u>AAGAATATGATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGCAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATATGATTTT</u></font>gctattctgttctgctgtggaaaactaagtagtcacttgtttaaaaactaagatgaagcagacatagcataaaccaattaaaat<br>taaatcaaaacaacagttttaagatgcaatatgcatacatgaatttcttaacagattattatagttaaaataccactgagtgtactcacttcaagtggtg<br>tgtaaaaataaaaatagctgaagagaggatggtcaaacctcaaaacaagtactataaccaccacccaaaaatgcaaaataaaggaagttgtcttcttcag<br>agttaagaggaggggaaaaaatctttctacttacacattgggaggaagtggggatggagagaaagaaaaacaattccatgcccttcctaaatgtttaaga<br>ac	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RRAS2:NM:001102669:1/6	
0	chr11	16554155	16554462	1000361	0	+	pAlu11-16636632; 5611; RIP_Alu_chr11_016_02	NA	NA	SINE	Alu	Ya5	gattccatttatataatgcataaaaacgggcaaaatcgaactatattgtttagagatgcattcataggcagtaaaactataaagtaaagaaagtgactaa<br>cattaaacacagaatggtgatggggtaacactaaataccaacagggagtatgggggtgtaattgggaaggaaaacaagtggcttctgggaaaataacagt<br>gatttcattttttttacctcaatgttggttggttacataggattcacataactattagttacacatatatacatccatattttaaataccttatatgttt<br>acatttcaatttcaaaaaataaaacacaaatctacctcagagttactgtgaatgtaagtgaaataatgtatatggaaaggtcttt<font color="green"><u>GAAAACCACAACTAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>GAAAACCACAACTAC</u></font>acacacactcagttttaaaagttaaagactggaaacacactcactcatagaccaaataagcaatagcccacatgata<br>taaaatcccactacctcaaaaacacatgttgtcatagtaataagatatatcttctgtaatatcataaaataatgttgtcattgtaataagatatatcttc<br>tgtaatatcataaaatgatgtttaacattattcttttagagattcattcctttggattaaaacattatcctttttttaacatgccttctgagaaaatata<br>ctaagctgagaaataaagttataagggattttaaaggaactataatatgaagacttggagtttttcagatttagaataaatatagttcacgtctccttac<br>aacactcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	32243230	32243549	1000362	0	+	pAlu11-32325708; 238353; RIP_Alu_chr11_032_01	NA	NA	SINE	Alu	Ye5	aggctgctgttgttatttaggtaagagatgatggtggcctggtcaggatactataaatagaaatgataggtatgactggataggaatggcgagaaaggtg<br>aagagagggaaagatgaagggagggtgagagggaaataacttctacttggatgacttccatgtgtttggattaacaacgtggtgagcagtgcacttcaac<br>ttgacccatctttctttcagagaacagctttccagttgccttgagaataagtctgcagaacctaattcctacttcttttcatcttgccagccatggacga<br>aatccttcattaattaggaaatcagacaaaaaacaaactaaaatgttcccagaaagaggtgtcaggaagtagaatatgtatggaatt<font color="green"><u>AAGAAAAGGTCTT<br></u></font><font color="red">CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAGGTCTT</u></font>tattgatcatctgttccagccatgttaatagataagaaaaatgtgactcagattaaggagccatgac<br>caaaaataaacagccagtcaatggcagaaccaaggctagaatccattcttctgattgaacaaatatgaatgaagcagcataataaatgggtaaaataatt<br>acatgtacataatagctatatatttgtatttttatgtcctctctcctccaatcattggggaaagagttgtggcatttgaatgcaaattgaagggtacaat<br>ttagcactgatttttgaagacagcttgctacacatgctatgggacactaaactgtaaaacactaaatgttacttaaggaaaggaaggaaggaatttttaa<br>cttcaaattatgttgttgaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	37918639	37918941	1000363	0	+	238373; RIP_Alu_chr11_037_01	NA	NA	SINE	Alu	Yg6	caggagtaaaatatgcaaataaactggaaacattatcatgctaagaaatagattcttatttagccttgctgcctctggaggagctgtatgattatatgtt<br>acatgataagttagtttaaaataataacaggcaattaaaaaaacttttaatatttttggagctattcaatcaccaacatttatttgtggattctcctgtg<br>aagacagacttgccctttttagtgctctgtgggaagaaaccgaaaagaaaaaaaagacaaagtagctctcagtctacaggaactgcagtctaactggata<br>acaaatctatgcattgaaatgcattcagtgcccttacaaataaggacaaaggctgaagcaaattaagacaatggggatggaata<font color="green"><u>AAGAAAATGCTTATTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGAAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAAAATGCTTATTA</u></font>tattagaaacagaccaactgttgagtaagaacaggttagtttgggtgagattaaggacaagattaatgataaatttagcta<br>tcaaactcatttgcttctttctgtatttttgacctagactcattaaacaataaaataatgaattgctttttatttcaatacatagctcatagaaaacttt<br>agattctagctgattcagttacattattgaatatcaattcttataaaaatgaatagatgatgacaaggtttctttaaagggtgtttatttatttattctg<br>ttatagattcagggggtacaagtgtagatttgttacatggatataatgcataatggtgaagtttgggcttctgctgtactgatcactcaaatagcgaaca<br>ttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	42420683	42420985	1000364	0	-	3303; RIP_Alu_chr11_042_01	GGATCACTGATGCTTCAAATCAAG	CTGAACCAAAGAACATGGATCTG	SINE	Alu	Yb9	gtggaatcttagttatgaatctcctgaggcttttcagtgatctgttggctactattactctaatcacctctatcttctgtaagagtcagaattacccatt<br>tcctgaaagaatccccacatatctgaaccaaagaacatggatctggcgatagaaataagtaaaaaatcttttgtagaacaactcatgcgtctatttctta<br>ggactcactctgttttcaacccctcccacccgaggggagatggtctgtccatattatcatttagcacttacagagaaattttatgattgagctgagacat<br>ttctcaatatggggaattgtgtagttaacattttcatagtgatttgccattaataaaagcatacttcctgttttaattgacaacatttattt<font color="green"><u>GAGAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAGAAACC</u></font>atagaagttgtgatggtttggatcctagcctctccccaaagtcaactagactttttactttctactacaaatatatcttttctttctcc<br>tattgtttctcctcttctttccccacactgtccacttagaatatagtagccattgacaacttaatattgaaataataacctaatgggaacaagaaagagg<br>ggcttgatttgaagcatcagtgatccttactataaatgggtaactgggttacatggctgaaagagtgattaccttgtgcatcaatcacttattggattat<br>taggccaacataaaacatatagaaaaaattatgatcagttcagttcagttaaacagacaaaaactgagcgtttactgtggatcaaggatgccacaatgct<br>aaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr11	43419242	43419243	1000365	0	+	18402; RIP_Alu_chr11_043_01	NA	NA	SINE	Alu	Yb8	tattatggccctcatcctgttattcttctgtttaagaaacaagaggctccctttacaacaaatcctcttcgtgactttcccacacatttgtaacatcacc<br>taccttttcctcagtatcttatttgttactatcccctgtatacattctttattctaattaatttgaaattggtaatgccctcacatgtgcctttactatc<br>cctgtatgtatgtgtgtagacaaatgagtctatgcatacatgctttaaaaaaaaaaaattgttaactctggaaggctggatgcagtagctcacacctgaa<br>tccaagcacttagagagcctgaggtgggcggatcacctgagaccaggagttcaagaccagcctggccaacatagcaaaaccc<font color="green"><u>AAAAAAAGTAGCCAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCTGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA</font><font color="green"><u>A<br>AAAAAAGTAGCCAGGTG</u></font>ggtggcctgcgcctataatcccagctacctgggaggctgaggcaggagaatcacttgatcccaggaggcagaggtttaagtga<br>gctgagatcacaccactgcattgcgctccagcctgggcaacagaacaagactctatctcaaaaaaaaaaaaaaagtccctatggggagtgacctccctga<br>ccctctactcttatctgtttaaatcctgtctcaggtagtccgcctttctctaagaagcattttgtgattacatgcaaatattttttccctctaaaaaaaa<br>attaatttttctcttattatttcatgtatgtagttgtctgtctccaacttgattataaattcattatatttcatttcttaaggttagaaactttccatt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TTC17:NM:018259:16/24	
0	chr11	43848421	43848741	1000366	0	+	9989; pAlu11-43930898; RIP_Alu_chr11_043_02	NA	NA	SINE	Alu	Yb8	agctgagatctgaaccaagtctcgtttgacatcatagttcatagactcaaaatgatgccattcccatggttctgaggactcagtagctctacagaggaat<br>ctgctaagccatctagataaaaccatcaagaatgcttaataactcaggggctgctggattacactgctaccaactcttcttttttgaagtcactgaaaga<br>caccagcaatgaggtcccaagaaatggttcatgtcattttaggaacagtcctatctttcctaatttggctttcattctggcatgtatttgcagagaggtg<br>gcacggtggcatcatgtggcattgtggttcagtcttctttgtaaaatgggtctaataataataatgcctgtgtaactgggttctt<font color="green"><u>AAAATTAGATCAGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATTAGATCAGTG</u></font>taggcatgtaagtgattggaacagcacttggcatgtaagaagtgctcatgaaatgttaactaat<br>gttattatttgctattatttagaaataagaatgtgtaaatgttgcctactccttttagggataatgtaactatcagaatatcttcaagctgtctgaatgc<br>tacataatttaaaaccttgacataattccctatactccatagtgactttgctaatgactataacctctagtgatctcttgttccccaaatttttgtctgc<br>cctccataatttcacatccaattacactgttttttaattgtatctcacacagtttaccctgtggttcactggatggagattttacctcctgcagcatcta<br>caatcgtgctgggcattgaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	49381674	49381992	1000367	0	+	pAlu11-49456606; Yb8AC1565; 54444; RIP_Alu_chr11_049_01	TTAATTTGGTTGGAGGCTGG	TCCCCACTGTAAAGCAAAGC	SINE	Alu	Yb8	agagctcaaatttttcagccaatttatttttaaatgcatttataaactatcagaatgctatgctgcagaccttttagtagttatagaatcttgtgactga<br>aaggtacctcataaaaacctgtgtgtcttaactaccttcccagagatgtagggctcagatgccagacccagagaggtttctaggagcctggattgagtag<br>gtctgcctttaatatgccaccaagggacagagaaagtatggtgttcaaagatgacactggaaacaaaagtagtcaaactgagatactatttgaaaatcct<br>aagcagacaagcacaactaggtataaggaaactgaagagactgggaagacctggacaaagtaaattaatttggttggaggctgg<font color="green"><u>AAGAAATAATGGTGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATAATGGTGAA</u></font>aacccctgaaataatgtggaagagtaatagatacttttaatagagcatggttagctttgctttac<br>agtggggagagttggtaagaaccctgagccaatttaaataaatataatatagacagactgcttaaattttctctatagattccaaatcaaattagccacc<br>caatccagtatgtgaagacttcctgtggttaccacttattattgtccaaaggtgtccattttgattttgtaactcggagtattaaacaatgtttcccctt<br>attgaactaaaatgggcccactataacttcttcctactggtcctagtcttttatgctatgcatagccataatacaaatgcaatatcaattgtactttttt<br>tggaaatcaatagggcccc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	443	110	NA	intergenic
0	chr11	61646898	61646970	1000368	0	-	12975; RIP_Alu_chr11_061_01	NA	NA	SINE	Alu	Ya5/8	agtgtaactgtaaccccacttcctgaaatctcaggagtaatgttaaaaatccaaacccatcaaaggccagggtgttacggtatttggctcatgaatcgaa<br>aagcctaatcatttcaatttaatctttacaagtagaacaagatccaaacatgggacgttttcttatttttctttgcttttgtggttgtaatgcccttttg<br>gttttctgagcaagctgaatacatctgataaatactaccattggacaaaggatctaaacattgagatgttttactaaatcaaggtttcaagttggcacaa<br>tgtttttactaagtcatatttcaattagttcatctttccaatatggaggcggggggggaaagacaaggactaatatgtcctat<font color="green"><u>AAAGAATCTCTGGCCGG<br></u></font><font color="red">CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAATCTCTGGCCGG</u></font>gcgcggtggc<br>tcacgcctgcaatcctagcactttgggaggccgaggcgggtggattgcctgagctcaggagttcgagaccagcctgggcaacacagtggaaccctgtctc<br>tactaaaatacaaaaaaaaattagccgggcgtggtggcttgcacctgtaatcccagcgactcgggaggctgagacaggagaatcgcttgaacccgggagg<br>cagaggttgcagtgggccgagatcgcgccattgcactccagcctgggccacaaaaagcaaaaaactccgtctcaaaaaaaaaatctctgccgcttttgag<br>aagtaaaaacaaaacgccttgtgaatggcaacggagtgtgcgtttatctagagccttctgtcatctcttgggc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	81233832	81234186	1000369	0	-	3136; RIP_Alu_chr11_081_01	NA	NA	SINE	Alu	Ya5	attattttataatatatttacatttacaagcattcttaaatgtagatgaaagtggagaataaatgcatggacaaaaattatcagtcgttggtgtgtatgt<br>acatacttcagtcttattgatttgactaataatgtttggtcccttaacatattcaaatcagctaagtgtagagtcccagctacagatatagattgaatat<br>gtattcaattaaaaatcccagtaatattcaatggcatctcatttttttcagttagtactgatggcagatagacaaaaagtttattgcaagtttaatgtac<br>atgaaaaagcggtttgaattacagtggcttactgtcaaagtgtgtcattagccaatgtaaaaccatatctagcataggtagatc<font color="green"><u>AAAAATATATGAACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATAT</font><font color="green"><u>AAAAATATATGAACCT</u></font>gtagtaaacatgacatttccataatcatc<br>attggcatagtagccaattaagctaattttctttgcatctaatctaaccagtatgccgtaaatgttttacagagaaggaaatgttttaaatttcccattc<br>tctgaatctatttctgtgaattagcaagaatccctcacttctataggtaataccaagctagaggcacacaaattatttttagcatcttggccccatgcac<br>tattcatctccaaatagtttaatagcttttataagtttgtcatatcatttactaccaagggtgaagcagaatacatccttaaaacagaactgtttccata<br>aaactctgtataccagcatttcagaaaaactctgggccacaactctttttcaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr11	91885655	91885949	1000370	0	+	14987; RIP_Alu_chr11_091_01	NA	NA	SINE	Alu	Yc1	aaaggttaaagcaaaggggactttcttatcatgctagctaaaactgccctgttttatatctcaaaaaaaaatatatataaatatatataaattatatttt<br>aaatttatatatataaatatatataaattatattttaaatttttatatattaaatatgttttaatgtataatattaaaatatatatatttaaaatatata<br>tatatcttgatttcttggaaggtcagataaacaacttagtgttggcttggtggcatggaacttaacatgagtgactccattttggtttgatcttttgggc<br>ctggtgcaggaactcagtccaaaccagtgactttctgcaaattgtatttaacacactaaaatgtatttgaagcattataaacatctaagtt<font color="green"><u>AAGATTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAGAT<br>TATC</u></font>tccacccacaatttctctactaatctctgttcatgccatttcaatttgtttcagctgtgtccatatatttcagactgacagcaattacagatatga<br>ctataggagtgagtggagtgaccctggttgggcctatgaggataaaatgcccattcttccttaactgttaccacacactgtgctgaacaatgatttctgt<br>gaaggcattaagaatcttatacaggtccaaggatgaatagaacaagaaagaaaaatagtatctgtatgatcttgctagaggcaggcatggggttggctaa<br>aagtggttatggagcccatgaaagaatttcatgtgctctcagaaataaatctagtttaaagagtttgactcttgaagaaataagcaatttaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:1/25	
0	chr11	92248127	92248128	1000371	0	+	15668; pAlu11-92793021; RIP_Alu_chr11_092_02	NA	NA	SINE	Alu	Yc1	tttttccttcataggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaat<br>gataataatcattattgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttc<br>ataaacaagccttttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccct<br>ctcattgtgttaacataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaag<font color="green"><u>AAGATCCTAGACAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATCCTAGACAG</u></font>ttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg<br>ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc<br>tttgtatccccagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac<br>tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:FAT3:NM:001008781:21/25	
0	chr11	96119984	96120296	1000372	0	-	13787; pAlu11-96648755; RIP_Alu_chr11_096_02	NA	NA	SINE	Alu	Ya4	gaggctatccttactaagactgaagatcacagaaagatagtattagaaaaaaatggatacataaaatattccttggtagtgagtgttccttccataaaaa<br>ataataactttatggttgttttaaacagtagttgcaattggtatctttgctttcagaaatgtctaataggaaaaataaccccacagaatttggaaagatg<br>gaacaatatcttggtaacgaagtagaagttagaataagagagatgatgtgttttgtaataagaatcacaaagagacatggtatcctcatccaattgtcct<br>aatacttactaagcattgttggtgatttgagaaaaactgaaaatttggaaaaattatattcagattcaacttatttggaatcaatt<font color="green"><u>AAAGTGAATAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG<br>TGAAAACTTATCTCTATTAAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA<br>GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGTGAATAATTC</u></font>tgggcacccacgaagaatcagacgaagttaaatagcataagtatgtgcatattcgttaagaaaaataaaaatt<br>ttcaaaagatatatagactaagaaattttgactaaaagaaagataacagcagaagttgaagaatttctaggcacagaaagtcaagagtacaggagactca<br>gtggtacttattagcaagcacattatgaaaatggcttacaaagtggagagagactgttgagtccagaaggagcgataaattaaaacaatagccaaaaagt<br>gctgtgagtgtagaacatcgctattcatttgtagtgagtaagtagtagaagtaagaggcatagaagtggtcataaaaagcatgataatagagcttaaagg<br>ttgagtgattcta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr11	102593155	102593300	1000373	0	-	pAlu11-103121915; 6899; RIP_Alu_chr11_102_01	NA	NA	SINE	Alu	Yb8	tatttcaaagagcagaagttttcattttgatgaaattcaatttatcaattttctttttctattttgatatcacatcaaacaagtctttgcctcaccaagg<br>tcataaagatgttctcctgtgttttcttctaagttttataatttcatgttctacactaagatccatcatccacactgtgtaaatttttgtgtaagttaaa<br>aggtaaaggttctgggctttttctctctctacctggatatctaaatatccagcaccatttttcaaaaagactatctttccccatttatttggcatttttg<br>tgtaaaatcaaccgaccacattccagtgatctctatgcctaatattacagtaatatcagattgccttatgattactgaaaagtgactctt<font color="green"><u>GAAATCCTAA<br></u></font><font color="red">GTCCCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG<br>TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>GAAATCCTAA</u></font>ctcccataactttgttgatttttcatgccacttactttttaatt<br>gagatatatacattagtctgatgaatattaaagttaattttcataaaagaggcattagattagtgcctagttgacaaggtaacagttaccaagagggaga<br>tggggaaacatatttgaggcatagtcagggaaataaaattgacagaatttaatgactcattacattaagggataaggtaacaaaagtctcagtataatat<br>aatttataagttctgtcttaaataattagtgtatattatagtaccataatctgaggaaagaaatacaggaaagaaaactcataagttcagttttgaacct<br>gtttcaaattgtaatgcccgagagacttccaagaagacatgtttaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DYNC2H1:NM:001080463:55/90	
0	chr11	102916042	102916344	1000374	0	-	Yd6JX456; 20874; pAlu11-103444811; RIP_Alu_chr11_102_02	AAATGCTCAATGAAGGCTGTAAG	AGTATCATCAACCCCTCAAACAA	SINE	Alu	Yd8	acagctctgtcaaattgacacataaaattaaccatcccagctagccttcccatttgataagtgacttctggtaactaagctcttcagtctagtcaatgcc<br>atggctgcaattcttccattgcaagccctctgtaaatctgatttgtgattagaattggtgtagcaaactgtcagcatcaatattgtaattaggaagagct<br>aagagcccaggacttagagacatgcaaaagtctatggcaatggagagacaagcagaagagggagtccaggaccccagaaaaagaggaaattattgcagta<br>tcatcaacccctcaaacaagccaaattacacaaagggaagataatcttttcaagttctatagccacaattacattgacagagac<font color="green"><u>AAGATTAAGAATTACA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT<br>CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC<br>GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGATTAAGAATTACA</u></font>tgtagtatagaaatatactggtgaagatccaaacacaagaaacttggcatcctcttacagccttcattgagcatttgctta<br>atgtaaaaattatattgttgctttaaggagatttgtaagttactcacacaccatcattttatttctcaaggaatttcttttctccaattcaacaggacca<br>atagcactggtatgcctatatcagttgttaaatgatctgaatatcatgtttggcatgtggaaaaacactagtggggacattatctattcatttataatgt<br>gtcatgcaaataatgccccataccaaccacaccgagaggttgtgacttttatactcccttttaaagaggaaggtatgcaatgattctcatttttgttata<br>tta	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	499	186	NA	intergenic
0	chr11	103515694	103516036	1000375	0	+	14867; RIP_Alu_chr11_103_01	NA	NA	SINE	Alu	Yb8	aaacagctgaaaagtaaaatgagtaaagataacagacagttaatgggaaaagctgagcactaactgccccagtacaaattaactatctgataaacggtga<br>aagaacaggcttacatggatccaaactgaactagaaataggcttctgggacaacaatccgatcacaaacactaaagactaaagactaacacaaaagttac<br>gtgtagtagctactgctttcaagtagatgcagggtaacccagtgattttttactttaaacaacaaagactttactcacaacatcattggaatcaactgca<br>tatttccctgattcataaagaaaactcttccctagaaaccagcattaacactgcagacagtgacaacaccttgggttcttgtcatgtctt<font color="green"><u>AATAAATAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGG<br>AGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGA<br>GACTCCGTCTCAAAAAAAAAAAAATAAATAAATAAATAAATAA</font><font color="green"><u>AATAAATAAC</u></font>tgaacgagaaaaaccaaaggaaataccagtatagagaactattcagg<br>caagtgtgcaaattaaatcctaattaaaccatttgaatatcagaacaaatatagcacaaaattataatgccaattagcattttgttgatcagtcattacc<br>ataaaacaaagagcaaatataaccatgttgctttaataaggtcctaattaaagaaaaattactttagcacaaaatgcaaagaaacagcagattcacacat<br>aaacattccagcagagacaagttaaagagattgagctcacatgcaattacttagtgcatgaaaaacccgtaaatccaacaatcctctgtggccatcaaca<br>atcctctgttaaaacatgttcaaaaggtgcactcttttaaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PDGFD:NM:033135:1/7	
0	chr11	105270732	105271034	1000376	0	-	1140; RIP_Alu_chr11_105_01	NA	NA	SINE	Alu	Yb8	tatctgtcttttatctatcttccatctatatatctacccatttatcacctttgttttatacctggctcccttttattgccactattttaggtaccttata<br>aaaatccacactcaataaaaagtgtaaaacagataatagcaagaagagagcaaaaagcctattaaggaagtgaattaataaagccataggtattagctca<br>gagaaaagtaaatcacatacacacacacacacacacacacacacacgcatgagctcgtagcttttgtaattgctttctttttgttttctcttagtattta<br>gtaaaggttcttttgcaaatgtgaatatgcttcaatttgctgagggaatgaaggagagtgttttgtttattttttggtgggaat<font color="green"><u>AAAATATGTAGCAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAATATGTAGCAATA</u></font>atcctgcagttagagtaagaagtaatgaggacttggagttgcttgtccttctgaatgcaccttggctatggttttgggatc<br>ttcagattatttgtttctttccttccctcttccctccctcctcctcctcctcctttttcttttatagtgaagtagattgtcttcctaaccaacatatgtg<br>cattgctgtttggctatctacgaaaaaatatatcagtctactggcaactgagcaaaaattgctgtcaagaggcccaggtatacgagctaacagctattat<br>atgctgagcttattatatgccaggcattgtgctaagcgtattacacagattattgatctagtttagttttcataacaaggttatgagatagatcctatta<br>ttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GRIA4:NM:001112812:5/10	
0	chr11	106101091	106101374	1000377	0	-	pAlu11-106629868; 6518; RIP_Alu_chr11_106_01	NA	NA	SINE	Alu	Ya5	ctgtcattttagtagtcactggagagtcaagcatttaattaaacatgcaaatgcctgtcactgactacttttaagctcataatttaccatttcaaacatt<br>tggctcaaagtactctgaaatattactaacctccatcaatgggaacaaatactttattaatattgtgataaaaagtaattacatattaaaatattaccat<br>atactatacatgatactctaccatggcttcatttttgttttgataataactttacgtgattaaattaacttttaaaaatatatttttaaattgaactatt<br>tggtataattctgataattttagaatatgtatactctcctaaatatacaccatgaaaataaatatcacagttagaattttagccaat<font color="green"><u>AAGAATTTATGTC<br></u></font><font color="red">GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAG<br>ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTATGTC</u></font>aat<br>aagaagatacatagaaatatcataaatatctgagttgttctctaccaaaataaaggatttcttaaataattcagtctgcaatcctaattatttctgcaca<br>gtgtaattaaatttctattgtgaaaattaatattcttaaaaagtaataacatcaattgttgcaggcttctttttaataaacatctacataaggtgtctgt<br>atacttggagatatgcttatctgagtaggagaataagatttggtggtaaagctaatctagtaaatgaaatcaaatgagataatagatgcgaagggcttga<br>cacagagtgttgcacactctaagtgctcagtaaaatgccagagatgatgaggatagtgatgctcacatctgtattgtcaggtta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:GUCY1A2:NM:000855:6/8	
0	chr11	124335362	124335456	1000378	0	+	18844; RIP_Alu_chr11_124_01	NA	NA	SINE	Alu	Ye5	acacttaacttccaaaaggacaagtgtttttccaaacaatttgaatgttgctattggaagttctaggttacctccttccctgatgcctggggatggaata<br>gaggatgaagagaatcagaacgaattattccaacaacaagcccaggctgtaagtacctgttctttttattttatgtctatgatattttccctatccccta<br>aactataaatatgacatctagggtatgaggtagggattaagagttatcacactcagcttcacttttgataatcatccccctttttttttttttttagctt<br>tgtaaagtggggaatagtgggataatgctttttaaaaattttaaatttaaattcatttgtgtttggtaagatactctaaaattatct<font color="green"><u>AAAGAAAAGTGCC<br></u></font><font color="red">GCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGA<br>AAAGTGCC</u></font>aaagtgctagaattcaaaacctattagaaagcactttaggtcaagaacatggattttccaagttatattgaaattatattctaggcaagcta<br>ctattagtttgtaatttacagagagaaataattcttaccttcgttgcaaagaagttcagtatacataggtggcatttcatttattatttatctttgtctc<br>atttttcttatttttgttttttaatctgattatcacaataaatgaatctatagttgtaggttaaagaataatacatagtaaattcgtaacatatccagag<br>tttttggaaaaatgtaatttttatttaatgactcattttatatacctaatatttaaaaattaaccactgtgagtagatttcatccattcacattg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC15:NM:025004:4/16	
0	chr11	132063805	132064084	1000379	0	+	15278; RIP_Alu_chr11_132_01	NA	NA	SINE	Alu	Yb8	atcactcatgctctttgaaccggcagtaaatgacaaacatgaggagaaacaagagcactaaactggtacccgtaatctagtcctgaccgacactagcttg<br>agacattgagtgtgaccttgggaaatcaaagagctttcctgggcctcagttatccaatctgaaatccaggatattggatgtggtggttgccaagacctct<br>ccaattaaaggctgtaatttagaaattgtcttttttaacctttttcaaggaatgatagtatattcaatgcagcctggaaataatgatggtatcactgttt<br>ttgatggaattggtactggataaccttacattaagtagaaccaggctgcattttcagcaagagagcatattatctaatagatacaaaata<font color="green"><u>AAAAATAGAT<br></u></font><font color="red">TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAA<br>ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG<br>AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAGAT</u></font>aagctccttt<br>ttgtgtatttgagaaacaaattgttagtaaaatgagctgactgtgctctttgagcccctgagctgcctgccctgaggattacgtgtgacatgtaacaaat<br>cccgggaatgctgtttcagtctgtgaggcagggctccataattatttttaatacatttctaggcttgttttcagaatatacaaagaaaacattcaataat<br>gtcatctaaattgtgaagggcaattagattgttacattgggattttcactggattatgtggtgaggtttcctcacttggaataaggccctcctttgtttt<br>ctcattgatttaaaatgacaagtttataaagagcaaaaatgtttggatgactgacagttcaaattttgtggtaaagagta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:OPCML:NM:002545:1/7	
0	chr12	5639864	5639865	1000380	0	+	3372; RIP_Alu_chr12_005_01	NA	NA	SINE	Alu	Yd8	aagctatcagcaacctccattagtactgcagaaggtccctgacttaatgatggttcgacttacaatttttcgactttacaacaggtttatcaggccatta<br>aatgcattttctacttttaatatttctgacttatgacaggtttatccaccataaccccactgtaagtcaaggagcatcctgagatatgaatccttgatat<br>acagccttttctataccatcatacgaacatcttaagccaaatgactatgaactttgaatacatctaaaccctgtgctgtggcctccaatgcttaccatga<br>tccgggctttgactcctctccaactttatctcttgccatgcaatcttttgtatactccatctcagccacactggcttccttcctgttctt<font color="green"><u>AGAACACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCACCACAGCACTCCTGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAACACGCC</u></font>cc<br>atagcaaaaccttagcatgactcctctcctcactctccacccagctcctccctcagctcagccttcaattctcgattccagcatcactcccacaatgaga<br>actttcccacgccccttgtccatccctggtccatgttattctctaccacagcacttattgctatccaaagtgatcttgtttatttattcatctcctaact<br>ggctttttaaggaaaacatcagctccataaaagcaaggaacttcaaatctcattcaacatggatccagcacttgggtcacgctgatcacagaattcattt<br>gcatggatgactcagagagtggatatcagtttggaaacaatagccgggctcattttggtggtgctccatgctcataatattgggaatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ANO2:NM:020373:15/26	
0	chr12	10125471	10125472	1000381	0	+	19912;1104685702828; RIP_Alu_chr12_010_02	NA;NA	NA;NA	SINE	Alu	Yc1	acatggggacagagtgaccaggacacacttacctccagctttgttatacagctcacgacagagtttttcagccacatgctgcagacttcctgcaagcttt<br>atattctggacttgaagagattgcaactcttgggacgtatttcctaatctttcttccatttgagaaatggtgtcttgaccagtattggagagctggtagt<br>actgaaaaactaacccaaatgaccaagtcagactggacagcttatttctatgttttatttccattttctgcttatggggaagacaaaacagtatattttt<br>tagtatctcaggctctgagttctcatattgcctatattcaagtttggactctagtacatatatgagaagttgtatcaccttgggca<font color="green"><u>AAAGAAATTAATTT<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAGAAATTAATTT</u></font>tgtgaagtcatgaggagaaaatgacggctaagagggctaagatagagctcccatttggacaacagaacagggtgaggagac<br>tcacactgtgaacttttcctccaggaaccacctcaggaacataccaggaaaattgaaagaatgcacagatcctttgaaagaagcaactcaatactgaaaa<br>ttctggaagacagccaaaaatgtgtgaagtggggaaaacccacctctgaacacacatccctaatggggaacctgaaaatctgggttacatgagaaggatt<br>taacctcacctggagcagaaatggatgtagggagccaaatataaaatagatgcaaaatataaaagtagaagaagcagaggaaagagtcctgtaggcactc<br>ccatt	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:CLEC1A:NM:016511:2/6	
0	chr12	40768967	40768968	1000382	0	+	21995; RIP_Alu_chr12_040_01	NA	NA	SINE	Alu	Yb8	cagactagcacaggaaaaagtctaaaaagtaaaacagaaaataaatctgttgagtgttgtctgacctgtttgtcccaagatatatttttggctagagtcc<br>ttcttttactataaaatatactaatatcgagaaataaattttggaaaaggctgtggtagtaaagtggaaataataagtaatctttgtattttcaaccagg<br>tattttgtgatttagtattttcaactaggtgtattttcaattagaaagatggatggggcttaaaagtagaacattttatatggaagttgaagttggtgaa<br>aaatgcaaaatcacaaaggaaattcagaaccagaaatctcccaggttatccctgaggttcactagcacgctgagggagaggaaatga<font color="green"><u>AAAGAACCACCCC<br></u></font><font color="red">GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACCACCCC</u></font>agtctgcaggaa<br>gctgcagtcaatctacagagaagaggatgaacttggatgtttgtttaaaacatgggttttgtcactgtagagatgcaaagagatcctaaactttggcatc<br>ttttgagcaagaaaaactgtaagcattaactgcataaaaccatcacccttggagtgatttttaaaaatcaatcacacatactcaagataaacgtctaaaa<br>ttgttttgaagataaaagttttaaaaagagatggggaaacttagccaggaacaatgtaataaaaataacaatagcacacagagtgcttgctacctacatg<br>ccaggcaccattctaagagttgtatatgactgcatgttctcattcataggtgagaactgaacaatgagaacacat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GLT8D3:NM:173601:7/8	
0	chr12	43705813	43705814	1000383	0	+	20014; 238919; pAlu12-45136302; RIP_Alu_chr12_043_01	NA	NA	SINE	Alu	Ya5	tccccagagcctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctg<br>ttgctttaagacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccag<br>acaaagagcacatagttcccaccctaaaggagctcaccttcttatgggaggggtgatccatgaacattcactctgtaacatagcaccaggaaggcagcta<br>ctatgtaacatagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataa<font color="green"><u>AGAAAGATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGATCTG</u></font>aaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataa<br>aagaacaataccgtttaagagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaa<br>gcagtcatcaaggctggggaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggtta<br>agaattctgatttagttgtccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagt<br>gagtagcaggtgcctcttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:DBX2:NM:001004329:2/4	
0	chr12	45361634	45361965	1000384	0	+	pAlu12-46792013; 18789; RIP_Alu_chr12_045_01	CCTATTCAGTTCCATCTTCCTTCTGC	GAGACTCCATCTTGAGCTGTTCCAG	SINE	Alu	Yf1	accctaatatagctagccaatttcattgccttgtatctattattttctacacactttccaaagaatcaaatgcctgaatcattgcactagtaaaagcttt<br>accccaaagtcataaacagtaaaatttttagcaactgagctatcattttgtactgggggatatatgaacctcacatatggcaagatggacttttcttggt<br>ctttttagtcctgtgaggttttttcctttttttcttttcaatcagtatctagaaaaaaaattaccttgaaatctagatactttgagttcatgtaatattt<br>ttattcctattcagttccatcttccttctgcattaattataatgcaatgaaaactaaatcaataagtttagtctccaggcaatt<font color="green"><u>AAGAAAGTATCAGTCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG<br>TGAAACCCCATCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAGTATCAGTCA</u></font>atgtagctctaggtagagcctttagtaaacctgaatctttaagacctctgaa<br>ctttttttaaaaaatgaaaaacgtacccagattttgaacatttgttttgtttaatactgttttgtactgtagatacagtaccaatcaatttagctcaagg<br>gtctgtttgacaaatgtcagaaccctggcgaccatggtgcatagaattatgtccaagcttcacatgtccaccatgaggccatcatatttttgactggggt<br>agagttctggaacagctcaagatggagtctccaaaaaggtgcccagcttctggtcatcactgaatgttgtgcctaagccaaagtcaactatttttatgtt<br>gtagttggcatgtagaaggaagttctagggct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr12	52531689	52531963	1000385	0	+	13247; Yb8AC1634; RIP_Alu_chr12_052_01	GCTGGACCAGGAGTCTCTGT	AGGCACTTGAGTCCTTGCAT	SINE	Alu	Yb8	gagaggtagaactcaggcaaaacttctcccccagttctgtcttagtctagttttcctgcctgaagagagacattttcaattcatcagagcttgtgcctcc<br>ctccaacttaagatctaaatgagtgttttcccacctctgtctatctactcacatcccaaatatctccaaagaaactggggaagagctctctaatggggaa<br>cgtgaacattccacttctctattagagaatcccacaaaattatgtcagagagctgctggaccaggagtctctgtttctcagtaccctgacttttgctccc<br>tccccactgctttgcttggctggaatcaattgacattgaacctgcctattgcatttaagagaagtgggagtacagaaagggtttt<font color="green"><u>AAAAAGTTAGCTTCA<br></u></font><font color="red">AATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATAC<br>AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG<br>AGCCGAGACTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGTTAGCTTCA</u></font>tgttaggaat<br>aatgcaaggactcaagtgcctccctaaggatctaattttgaatctacagggttgaatgagaaactagtccatttgaggcagcctaacatggggcacttga<br>aaatggacattttctcacgatctgtcctttcctttaaaaaaataatgtaacttagaagaatatgattatcctaaaacattttattttttaattaaagagg<br>gttcattatgctacccgtctcatctcgtctcagaggaggaaaaccctgtgttcagcaagtttgctaagaaataattataggttcagatcttccccaggcc<br>ccgaaattcaattaaaatttttttgttttaagttgctagcagtcacatggtatgtatgtgtgtgtgcgtgcgtgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	467	178	NA	intergenic
0	chr12	63683559	63683560	1000386	0	+	17453; RIP_Alu_chr12_063_01	NA	NA	SINE	Alu	Ya4	cttaataaaacctatcatgaaaaccccatttaaaacttcaatctcgggctgggcatggtggctcacgcctgtaatcccagcattttgggaggccaaggtg<br>gggatcatgaggtcaagagatcaagaccaacctggcaaacatggtgaaatcctgtctttactaaaaatacaaaaattagctgggcatggtggctcacacc<br>tgtaatcccagctactcgggaagctgaggcaggagaatctcttgaatccaggagacggaggttgcagtgagcagagatcgtgccactggacgctagcctg<br>gcaacagagggagagcccgtctcaaaaaagcaaaaaacaaaaaatcccaacaacttcaatctcccatttccttccccagtactg<font color="green"><u>AGAAGGTAACAGAATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>GAAGGTAACAGAATA</u></font>aacttatgtatcatttacttattatgtttattgttgtgctcaaaatttctttcacttctttagattcactcttcacccttatcat<br>ctctgtcctgtgttctgggaagctgacatctatggtgtatatcaacaaatctcccttgctctctggcttctagttgtgttcagctataggtgacactgtc<br>aaaatgttgcatgtggggaagaaagagagtttggtgtatttccctaaattggtctgtcaaagaagactagactgctcagcacagtgtcaccaagcagaga<br>aaactcctgatcttacatagggctcaacttgaggtaaggaactcaagattggcacattttcagaggctcaaatggctgacatcatctgtagaaactttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	74585211	74585511	1000387	0	-	5142; RIP_Alu_chr12_074_01	NA	NA	SINE	Alu	Yg6	catcaaacagaccagtgtgatattattaaataggaagcacaaccctaggcaaacaggatgaaatccaattatataagggtgagagtaaggacttatataa<br>accataaaaataattatagaattggctagccaccatcactgctttaaaagacctgtgggtcagggctgatctatgatcaacgatcatgatcattgctgat<br>catgaatcagcaatatcatgtcattgtgggggaataaagctaagaccatccagggcagatgtaattcttcctctatgctctgagtacatcagccatgact<br>gtgctacaaataatattgctccctgaacttaaaaagaaaaagtctcaaatattagtattttagtttagccaataaaattggcaaagtt<font color="green"><u>AAAAAATAATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAATAATCC</u></font>tctgtgttagtgctagtttgaagcaagtatattttcatatacttctgatggaactcctaatgataccacctttctacaaggcaattt<br>gacaacatgtattaaaaacctttagctgtgaatattcttggagcaattccaatttcagtatttttttttctcaaaagaaatcactggagacagatgcaaa<br>atttagctacaaagtgtttattgcaatataatttatatagcaagatcgggtaatatggtaaaacgttggctaggcacggtggctcaggcttgtaatacca<br>gccctttgggaggccaaggtggatggatcatgaggtcaggatatcgagaccatcctggccaacactgtgaagccctgtctctactaaaaatacaaaaatt<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	82566416	82566713	1000388	0	+	237938; RIP_Alu_chr12_082_01	NA	NA	SINE	Alu	Ya5	tgaagatgaaggcctttatgatgctctacctccacttaatagtaagtatattttctcttccttttttcttaacattttcttttcttcagcttactttatt<br>gtaaacatacagtatataatacttatataaaatatgtgttaattcactgtttatgtcatcagtgaggctgctagtcaatagtaggccattagttgtgata<br>ttttggtggaggcaaagttataaggggatattcacctgcatggagggttggtccacctaacccctgtgttgcccaagcatcaactgtatgttcaaatata<br>tgtatttttatttttatagtatgagttaattggttttggtattagttttcagagctgatataacaaaatatcatctgggtggctt<font color="green"><u>AAAAAAAACAAATTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAAACAAATTT</u></font>attttctcacagttctagaatctggaagtctaagatcaaagtgtgggcaaagttgattctttttgaagactttttttggcttgcagg<br>tgaccagccaccttctccctgtgtcttttattgtcttccctctatgcatgtgtctgtgttccaatcatctcttcttataaggatatcagtcatattagat<br>taggtctcacactaatgactgtattttaacttaactacttatttaaggcctatatcgccaaatataatcacattctgaggtactaggggttaggactaaa<br>cataaattttgtggagatgaaattcagctcatcacagtcctcaattaatccttatctttataaaatcctaaagcaaaggaacctaaacctagaccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	85047457	85047767	1000389	0	-	pAlu12-86456173; 17348; RIP_Alu_chr12_085_01	NA	NA	SINE	Alu	Ya5	attagtcagtactaaccaacattgtcaaagaaatgcatcttttataagactaaatttaaatgtttatatttttgatgaaaattatttgtttaaaaaccca<br>caggctcatgtgtcagctatcctttgggctgtaaaaataaaacaaaatcatttatctgcttttcagggaacataattccatcagtataggcaatcataga<br>tacttgtttaaaaacttcaacttaaatcctacataaccaactttcatcactcctcagagttaatgctctctatctcttagtaaaagtatcccaattccag<br>agtgtctcaggcatttttcacacagtgcatgtgctttatgttgtaggggtagactgatttgctaaagttggaacaggaattaaaagaagtt<font color="green"><u>AAAGATTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCGTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAGATTGT</u></font>gtaagcaaaaactcagttgtatgtaagcaaacccagttccccgtgaggaagagaaaaaggctggagtcctttaaaattaa<br>ctctctgtttttctctctgtggctagtgagccttatttctccctttcccaggcattgtgaagactgtttctctagctgtgcagctgcaaggtcactagac<br>agataatctcaagttgtaaaacatgttgttccttgaaaagtaataaataatgtaatgcatgtcttaattgaataactgtctttgtttctcacttctgtaa<br>tatgcttccccctgcacagatctccccccaccccacgaaatgcttaaaaggtagcttgactctttgttcggggctcagtcctttggatgttaatccgact<br>gggtcagtgca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGAT4C:NM:013244:3/7	
0	chr12	86862303	86862304	1000390	0	+	239047;1104685533784; RIP_Alu_chr12_086_01	NA;NA	NA;NA	SINE	Alu	Ya5	ggtgggttatttagaactttttaggaaaggggaaataacttctgggtcattgccatggaaagggttggtaacgtctatgttacaaatgccatggcatttg<br>taaactggcatggcattgggtgggagtgtcttatgctaatggacaataagggcagctatggatatcttccattgccatctgctggttcttgccagtttct<br>tcacttcatcctgttggaattaagaaataagtcctgttgatcctctacctcaataagatccaagaacaacctctttttaatattcgaggcactgtaaggc<br>agtggcatagtttatattctctaatggaaaaatagaaaactagaaaatagcaaaggtaaattctgactagagggagatatagaaattta<font color="green"><u>AAAAGAAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>GAAAATG</u></font>tatccttttgttgtaacatgtacaagttattttttaagatgtaacagctggaacctatagtacctaactccaggaacaatggtgactattttt<br>taatgttgaaggtgaaggaagagctatcacaaggcaaaaatccaaaaagtttctcagcacatgagtagcatcttccacggaccccttgggatccagaaga<br>ggtcaaatccctcagttatatattatagctccacgtagcttgctttatgacaaccacaaacatgcaatatattttgtggttattttatttgtgcctttca<br>cacctcctcaacagtaagcttcataagagcaggaacctgtttgttttggcttaccatttaatccccagtttctagcaaaggaattgacatataata	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intergenic	
0	chr12	92882476	92882771	1000391	0	+	Yc1RG189; 963; RIP_Alu_chr12_092_01	CAAAATGACAAGGAGCCCATAG	ACAGACTTAGTCCCAGGCATTC	SINE	Alu	Yc1	tttcaaagtcactcccagattttagttatttgttatatagcatcccatttctaggtaccaaaatccatatcacttatttttgctatataacaaattaaca<br>cttagtggcttaaaacaacgtacatgtattatttcacagtttctgtgagtcaggaattttggagcagcttagcttggcagttctggctccaggtttcata<br>tgaagttgcagtcaagatgttggccaagacatgtacagaaaatagctatgggatcagaaccccagcctcccagatggaatccaggggaaaggccagttac<br>acagtctggacctcacagtgagggatgaatgggaaatcctcccctccaaaatgacaaggagcccataggccaagaattctgatt<font color="green"><u>AGAATTAGGAGCTGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAGTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>TTAGGAGCTGGG</u></font>tcaggctctggccggcatagggaatgcctgggactaagtctgtgagtggcagaactttggtgcccaaagccaggcagggataggctca<br>cattaggagctgctgcatgacagccctctcagcatttggggttagttaccacataacataatattcaaattctttatccttcagtggcctttctccagcc<br>acgctctacttcatcaaagtccttctgattctgtggtagttaatgcctcaggcatagtctgtccagtgcagagaacagaggggccattaaacgcatccag<br>aaactacgcccaaggggcttatttctgggatgaatcaaacaaaaggagattgtcatgacaagaacttgggtaaggattgagaaatgtctctagatt	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	53	409	97	NA	intergenic
0	chr12	95229495	95229496	1000392	0	+	8929; RIP_Alu_chr12_095_01	NA	NA	SINE	Alu	Ya5	aaaaaaaaggtaatccaaaatagtaaaggcaaggcatttggcttttgtattcacaggctctaacatattatttcttagtgataagtaattgtaaagtttt<br>attgcagttgcaaagttacctacattgattatatgtaatatactcatggcaaaaacatttactgtaagcaaaagtatacagcgaagtgttacagaaatga<br>aattttgcaacctcagtaatttttgagtcctttcactggtaaattcaacttgaaatttactttaaatttattataccatatagtaacattaggcaaacac<br>taccacaaactctgtgatcagtttaaataactaaccaagtagacattatatgatcttgtatgcaacatggggaaagagaattgta<font color="green"><u>AGAAATGCCATTAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAANAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AGAAATGCCATTAAC</u></font>ctttatttaattatacaatgtgagctgggataaacttgaaaagaatcttgcctatatcattgtatcaagaaatttaagcc<br>ctataaaaagaaattcctcccattcataacagcagccaaaccatgaaacggaatggagaggtataggaactgcataaatatttactgagaaatataagac<br>ttaagtataaaaacatacaatgccaccaaatggtaagaataagtaaggagaagatactggtcctccctatattaattttataagttatataaccactaag<br>aaatcacaataagcttattcttagaacaaaataaaatgcctaaaatgtatcaatagaataaacagaaaaaatccaaaaacattctaaaataagaaagagt<br>atatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PCTK2:NM:002595:4/17	
0	chr12	100838212	100838293	1000393	0	-	13652; RIP_Alu_chr12_100_01	NA	NA	SINE	Alu	Yb8	catgtgccaccacccccagctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgc<br>ccgcctcggcctcccaaagtgctgggattacagatgtgaaccaccacacctggcatacttttatttttaaaaaagatatatttactttgtattatttgga<br>actagtaagtgagacctcctaaaagaaaacaaccaggatacatgactattaacatcaaacagcagaggacatatgaaaatctcattggtgggagagctat<br>taaagatgcctcccattgggaataagctaacacatgaagttgcacaatccttacagatttttctcaaacacattaaggataa<font color="green"><u>AAAAAGAAAGTGCTCTTT<br></u></font><font color="red">GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGAAAGTGCTCTTT<br></u></font>ttaaaaatgcaaaatgtcttctgcaaatttttactaatcctaattgtccgcaatttaaaacatttgaattgataaacacctacctggaaatcttggatga<br>aagttaggaagtagaaaataaaaccaaaggccactgtccattcacagatcgcactcactacgtgatatacataatcctaatgcaataataaagaaacaga<br>atttagccgaaaaagactcactttaatgtacatactgaaatacaatgaggagtttcaaccaaaggaaaaagctgtccagtgagcataagtcagaactttg<br>aggatatacggtaagcacaaccacgttactaagtgtcagggcacctgcccactgagaatgcgaaggcaggtattccaaagtt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DRAM:NM:018370:6/7	
0	chr12	102817538	102817854	1000394	0	-	pAlu12-104226260; 14809; RIP_Alu_chr12_102_01	NA	NA	SINE	Alu	Ya5	gacagattgttcttgccaaaataaggagaaatgtttagaatcattttccaatactagtaacactgactttattgtcaacattattttcagaaaaaataat<br>tatagtcaccaaaaatgtgattttaaaaccactcaacatatatattttccttcatatataaagatatatatctataagcatcagccatgagtattttttt<br>ttttgcttagaattaatttttgctgattatattagtgctctatgctctgtgactgtcaggcagtatatacttcctgaggttcattcacattcaccttgtc<br>atttacactctatgccaaccgtgtggaagaggcagaggatccacacctctgtgggctctgacaggggctgcttgtgagccatctacac<font color="green"><u>AAGAAATGGGGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAATGGGGG</u></font>ccacacatggcttgaaaacaaatcattagaaaaaatagtattttaaaagctcctgatgatctgtgtgttca<br>cattcccttcacttctctgggcctcagtttcctcatctacaaaatgaagggtctggactagcctagatgatttccaagaaccccttctgctctaaaattc<br>tgtcgtttcagttctgaaatctcaacgatgcccataattttaaaggtttttaaataaaaactcaagggatgaatcatcagctgaatttctttctcttccc<br>tttcttgaaaatcatttttcattgtttgacataagctcaatctctatcttttctgacaccttcactttcttaatgtcccacattcataaaaaaagtttca<br>agtaatcgattttatga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:LOC253724:NR:027249:4/16	
0	chr12	121576305	121576621	1000395	0	-	19405; pAlu12-122818682; RIP_Alu_chr12_121_01	NA	NA	SINE	Alu	Ya5	ggcctgagaatttgcggtggagaaaggggctggggaagagaaagacgatcaggagtggtctctgaaaagtattgggtcaaaaaggcagtgtctgtaaagg<br>gtagtgtgggagaagagagcgacttgtagctatttttttttttgtacgctcaatgagatgcttctagttgcataatttcaattagtgttcgtccgtgtaa<br>accttattattgtgtattaacgagctaggaaggtattgctgaaagggagtgaaaattcaacttaaaaggttgtggaactaccaattctgactgatgcgcg<br>gtttccgaagtggcccgtgatgtaatcaatttgaagtccgagaagcgttacagttaagtcttgtcactgaccttgttcctttaaatt<font color="green"><u>AAACTCTTCGTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAACCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAACTCTTCGTTG</u></font>accccagaggagctacagttcgtaaattatctattctgaacaataagcctgcgtgtgtataagataccca<br>attctgacggatccacattattttgtgcttacctcatttttattccgttaaaaggaaaatgtaaagattttgcattcctttttactgactaaaaaattac<br>atcattttcgataataattatgactcttaaacatagtgatagttttaaagtttgctcttcctaacgattggaatgcctgggattaggcagatgattttct<br>ttttcccccatacccctctattatttaggtgattgagtttaaacccgtttcttttactgtcttcctttgtttagtgttttgggcctcagtatacttaaag<br>agtaatactatttttct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RSRC2:NM:023012:1/10	
0	chr12	125471070	125471368	1000396	0	+	Yb8NBC225; 2166; RIP_Alu_chr12_125_01	GAGTCCAGCCCATTTTAGCA	CATGATGGTTTGCTGCAACT	SINE	Alu	Yb8	gcctcccgggttcaagcgattcttctgcctcagcctcccgggtagctgggattacaggcatgcaccaacacacccagataattttgtatttttagtagac<br>actgggtttctccatgttggccaggctggtcgcaaactccccacctcaggtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagcc<br>accgcgcccagctcaaattgcattttaaagactgcaagcaaaaattgctttatttgggagtttccattatgatgacacagcaaaaatctcagtgtatccc<br>ctacagtctggttcaacaccatccatctgactgagtccagcccattttagcatgggacattgagtatgttttcataactgttatc<font color="green"><u>AAGAAGTATTTTTAT<br></u></font><font color="red">GCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCGGGAGAAGGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>A<br>AGAAGTATTTTTAT</u></font>atgcttcacactaattaaaagatgataaagtttgatatgagaaattaaatgacatgtttgtgctgggtaatattccagtggcctct<br>tggcacataatatggttaatatttcattgtgttaaattagagaaggggttgtaagagagttgagtcactaaagcatgcccagggctctagactaactgaa<br>ctaaatatagcaaacaagcataatggcctcgaccacaatcatattgcaagcagtggacaagtttcagaaaaagcaatactattatcacatttaaattgaa<br>ctgaaattggtgtgcagttttgttttgcatttaatgtttaaatagatcttagttgtatacttctgtaagggcaataaacataagatatctattcccaat	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	449	135	NA	intergenic
0	chr12	125765917	125766240	1000397	0	-	pAlu12-126923812; Yb8AC749; 14203; RIP_Alu_chr12_125_02	CACAGGGTCAAAAGTGCTCAATA	CATCTCATGCTATGGTGTCTCAG	SINE	Alu	Yb8	tagacgtggcttctgatttttggttgcaaatgggtttcctttcctctgttagagtttgcacaagttgttccctcttcatatagcagagaggagattctca<br>ttctaaagccagccagatcagagcaatgactgcactcccagtggagaatagtgttgggttcacacatgacaggatgtttctaggatttgcattcattttc<br>tctctgaaagactatgatctagcttcctaatcctctatagagtttgcaaagtgttctaaagaaactttccttccttcctcccttccctcccctcccctcc<br>cctctcttttcttctttcctccatctccctgcaaaatgttcacagggtcaaaagtgctcaataatggtttacagggtagactttt<font color="green"><u>AAGAGAGAGACATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGAGAGACATCC</u></font>atattggctaaactaactaagcaccaactctgtgctgagcgctgctttaagagtcgtactt<br>tcatcgtcttatttaactacaacaacctctcattcttatttaacaacaatgaccttcctcattcccgttttagagatgaggaaagtaaagcttggtgctc<br>aagagcttgttcgatgtatacttagagagatagtggaagggctgggatctaaatcagacaggtccggctccaggtcccaagtgcctgagacaccatagca<br>tgagatgaagtgctaagatcacttcaagcatgatgcagggagggattggaggaaagtgatgtgagttacatttgcaccacagatgacttgcctgtggtgg<br>attactgtgccagggagattgttt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	667	328	NA	intergenic
0	chr12	126226396	126226705	1000398	0	+	668; RIP_Alu_chr12_126_01	NA	NA	SINE	Alu	Ya5	gaaacagagtcttgctcgtcatccaggctggagtgcagtggtgcaattttggctgactgcaccctctgtctccagagttcaagtgattcatgtgcctcag<br>cctccagagtagctgggactataggtgtgcaccaccatgctcagataatttttttgtatttttaatagagatgtggtttcaccatgttgcccagactggt<br>cttgaactcctaggctcgagtgatctgcctgtgtcggcctcccaaggtgctgggattacgggcatgacccactgcacctggccatatttttaatatttta<br>atctgaacaatttagaatagaatatagagaaaacataaagaggaagagatatgaatttaagtgggtatatttcattggacgagt<font color="green"><u>AAAAACTCATTGCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAACTCATTGCTTC</u></font>aggtcagtggacatcgtacctatcatcacagatttcttggtcaaagtggcacccaccccaagacttacgtaagt<br>gtttctattggtcaagtgcagtagttcacacctgtattcccaatattttgggaggccaagttaggagaatcacttgaggccaggaatttgagacgagtat<br>aggcaacataacaagaccccatctctaaaaaaaaaaagaaaatagcaaaattagctggacaaggtggttcatgcctatagcctcagctactctgcaggct<br>gaggtgggaagattgcttgagcctagaagttcaaggctgcagtaagctgtgattataccactgcaccccagcctgggtgacagagtaaggccttgtctca<br>ataaataaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	128626257	128626571	1000399	0	-	449; RIP_Alu_chr12_128_02	NA	NA	SINE	Alu	Ya5	gcatatatgtttatacacacctatacacatacttatagacacacatatacaaatatatacatatatatattctgttgttctgtttctctggagaaccctg<br>atacagtcaccattttcatggagctcattctgtgaatctattttaattacaaatccagataattattaattgtaaaacgttatagtaagaaaaacccaag<br>caacacttaagaagaaattgctacagtttcaacccacaccatttggagttaatttttcgggcagcattatcgcggagatggtcagtgtaggtagagggta<br>tgcaaagagaaagcggagcttgcatgcaaagacgcatgggccgaaattggctcccacatgtgaggactggcctggaaaatactt<font color="green"><u>AAAATGTATCTATCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAA</font><font color="green"><u>AAAATGTATCTATCTG</u></font>cagacataattgaattaaccatccacaaatctacaggtttcattccagaaaaaattcattccagaaaaa<br>cggaatttttgtctttcattaaaaagtccaatctgaccactaggcccgcgtttctccttggtagcaattggtctgagctttctggcatttacggatttta<br>gcaaggcaggacttctcagtctggcacatggacgcagcgctcactgccttctctttgatacccggtttgtttaccttaccaaccggccccggtaatcact<br>tcaggtttgaccattgcagtcaaggatatcttcacattatttagtgagagatgtctaacaccagcatgcaagcgagtggcaataaattatttcagcagac<br>agccgctggggagcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TMEM132D:NM:133448:2/9	
0	chr13	20628918	20629223	1000400	0	+	pAlu13-20660817; 20606; RIP_Alu_chr13_020_01	NA	NA	SINE	Alu	Yb8	gatgtaaaacgaatgctcaaaaggaaggtcatcaattataaaaattatgaaaggagaacatgaagtatcagctataattttttcatgcataaaggggtga<br>tatagtaaatataaggcttccttccttttacaaagaaataaggagagatgaagcaaccatagggaagtggaaactatataattttcataaagacagaaga<br>tgctccttcttcatgcaatttattatatcttccagaaaagcagaaaagacagagaaaaaaggataacaagtactttattgatatcctagcatgagtcagt<br>tctaatggcatctgagtattttccgaagtgatttatccttctcatgggtctccataagtcaggaagacttctagaatggctatt<font color="green"><u>AAGAATTCCACACGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAACA<br>AAAAAA</font><font color="green"><u>AAGAATTCCACACGTG</u></font>taagtaataattgccaaacactgtaactcctattaaggagggggactgtcaaagaatcagactggttatttagaattg<br>gcagttgttataagtcattagtaggccaatggtaactgctgttaaatactaaagaatcagatacagtcaggcatcacttaacaatagggatacattctga<br>gaaatgcattaggtgatttcatcatgtgtgaacatcacagtacttacacaaacctagatggtataccctaccacacacctaggctatatggtatagacta<br>ttgctcctaggctacaaacctgtacagcatgtaactgtcctgaatagtgcaggcacttgctacacagtgataagcacttgtgtatctaaacacagaaaat<br>gtacag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C13orf3:NM:145061:7/9	
0	chr13	21421532	21421848	1000401	0	-	pAlu13-21453430; Yb8AC1648; 14345; RIP_Alu_chr13_021_02	TGCAATGGGCATCAAGATT	GGAGGTTCTGTGGTTGAGGA	SINE	Alu	Yb8	attagtgatattaatcattgtcagtttatttttcctcctattttttatttggttaggtgctgacatgtataagctttaagtaaatggaacgtccacttgt<br>attttattgcttgtcacaaaccctcaaaccacagcaacagtcacagtttatgttagaaacagcaaaatcgatgtgaattctggacttgacagtgacagat<br>ggaggcccttatgcagatgtgctcgctgcttcgcaggacttgaggtccttgggaattctgtgtgttatttgtgagacaggtgactcggaaggcagtgtgc<br>ccaggcagcagctcccctccagctcccacccacaggactgcagcactcggctcatttgcaatgggcatcaagattgactttcttt<font color="green"><u>AAGAAGTAAACCCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAAAATA<br>AAATAAAATAAAATAAA</font><font color="green"><u>AAGAAGTAAACCCAG</u></font>aaacatagaagcctgtggctatgtatcaactgccttcagggtttccgcagtctgtcctcaaccacaga<br>acctcccaggggaggtaaaagctgagctcatggctgggaaccagaacaggagcctcacgcagtcccagaactgctgggtgacacctggtaagtctcatct<br>ccctttgggacctggtctcctcctccaaaaatagtcagtagttcctacaatgcacattttaaggttttcatgctcaaaaaacatctgtgagcacttacta<br>tttactgggagctgagtgacggtagggccatgtgttctcactggggaagccatccaacacactcccttccaggtaccatcctctcacacctgaaaccctc<br>cacatatccgaggagga	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	450	118	NA	intergenic
0	chr13	22955657	22955973	1000402	0	-	238197; pAlu13-22987554; RIP_Alu_chr13_022_01	NA	NA	SINE	Alu	Yb8	aagaagtcttatctgagattcctcttatggaacaaagttccatcaaagccaatttaaaagcctatgtaaaaataataattatttttgctgcactgcatac<br>aaatacttaggccaagtataataaccaaaccagccctaccatgatttatctttagtaaaatggggaactggagagagaaaaaaattatttcaaaatgatt<br>atatatctgttgttagattctagtcttgcctaatgtttttttccaatttttattattttctacagtttggaccaaattctaatttttcttggctacaagt<br>cttcaaaataatgttttcaatttttttccgtctctttttcatttttcctaatttgaagtcactgaaaactaagttgttcttcttt<font color="green"><u>AAAACCCTGCAAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACCCTGCAAGCT</u></font>gaagacagacaacttaaacttcggcagaaaataacagtaacctgtttacatacataaggcactttcat<br>gcctgcctactaatgtatggacttcagagtaatgtggcccatatcaaattttttttttgagaaagggtatctatcactctgtcacccaggctggagtgca<br>gtgatgcgatcttggctcactgaaacctccgcctcctgggttcaagcgattctccttcctcagcctcagaaatttgagacaggtctcagtctcaaatttc<br>tgaggctcacactcctatgcaaggaaggaaggcaacatgttttctaatgccacatgaaattaaagcacaaaatgaaacttggatgcttgaaagaacagac<br>tttctgtaagttattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	22967369	22967660	1000403	0	+	14819; RIP_Alu_chr13_022_02	NA	NA	SINE	Alu	Ye5	tcctgggatctttaaacagccagagtaaagaaggcatccaagaagtttcttcatttcccctttccttaaaagtcaaacatttggactggacacggtggct<br>cacacctgtaatcccagcacttttggaggccaaggtgggtggattacctgaggtcgggagttcaagaccagcctggccaacatggggaaagcacatctct<br>gctaaaaatacaaaaattagctggaagtggtggtacgtgcctgtaaacccagctacttgggaggctgaggcaggagaacctgggagatggaggttgtggt<br>gagccgagattacaccattgcactccagcctgggcaacagagcgaggctctgtctcaaaaaaaataaataaataaaataaaagtt<font color="green"><u>AAACATTGGAGTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAACATTG<br>GAGTTCC</u></font>ataaaaagtcaacaaagaaaatgagggaagggactcctcaaagaaataatgtaacaaaatctctcagaacgaagagtcatgagattccagatg<br>gaaagagccagccaagtagccacgcaatttaagagcaccatcataccagggcactttgtccgaaattttcagaattccaggacaaagagaagaggtttaa<br>aacttctaaaggtaagaaaaaagaaattccatgtaacttcagagatctcaacagcagtagtggaagccagaaggcaatggaacagtggcttttaaaattt<br>taaaggaaaatgttttccatcttaaaattacataagcccaactgtaaatcaagcatgaggacatataatggcatttttaaatgtacaagttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	28789573	28789874	1000404	0	-	pAlu13-28821469; 52564; RIP_Alu_chr13_028_01	NA	NA	SINE	Alu	Ya5	acagactttatcccctaagtatctgaagttttccctccacttgcctgtgaaagcacatgccacggggctgaccctgccctggccccacagatcagctccc<br>acacagggaacacgaggattgcagacgcagacggagcaaagcaagaagagggaaaagcaaaggtggccacaacgcaagtgatgataatcactccagtgta<br>actggaaggaggtgaacagaaaacatgaatgatgtaatcagaaaagacagattctgatgccatttgtaagatgaattgaatgggaacagttcaaggtagg<br>atttatagggattggatagaatgaagaaaggaaacattatctcgatcagaatatatcaaataaaagaggaaacctggatgagttataaact<font color="green"><u>AAAGAGAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGAGAGA</u></font>gagagagcgcgcgcacaagcgaactcaggagagttagatgcaaggactagaggaaaggaaatcagttttcagctgccaatagtaatttt<br>ttaaatattaagaggaatatctgatattgaggcactaaagttaataggagaaacaatctgaatactgggaaggtggattttaacctatttaaggtttgtt<br>ccatttcaacacacatgtactgcatgcatgaaggtagaaattgtagctaggaatttaagggagaatagggaggtttctgtattcaaatagaggcctagaa<br>aaattaggcctccattagaagcctaattattacctggataagactaagggataattaattctgaagattattatgaaaagataaggacagaagagtgaac<br>aa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA0774:NM:001033602:4/14	
0	chr13	28852772	28853081	1000405	0	+	30989; RIP_Alu_chr13_028_02	NA	NA	SINE	Alu	Yb8	tagagacaccttccattggggaacactggctcagaacagccaacactgacccttatgccagacagccgtgaatctcagtgacattacagaatagtttcag<br>actgtaaactcccttgtgctactgtgaattttgttatttgaagcaacatatgtaaacacttgcttcatctttaaagacaaatagtttgaagtggggagtt<br>cccaagaagaagaggattcctctgccctactcatttctctgggggtttgacttggcataaccagtgagtcgtgatgtgttgattgtctcactaacttcca<br>ttcctaatagattgaattgttcagctagaagaaggaacacacgagaggagatgggttcatgggtcagtccctttatcagtgaagat<font color="green"><u>AAAAGACATCAGCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAGACATCAGCT</u></font>ttggctgctgactctcatgctggagggcagctgtgactgtcagcttgtgcatgcccctctaggaaaatctacattg<br>attttaggaggatgatgctgtagcaagggaagaaagaggtggaacaacccaaatgagacttgaagctgcctaggatcctttctgcagctgggaacctaca<br>gctgggctctcaggggcatgtatctgggcttctgcccagatacagatgctggtattgaggaggagagaggaagctctgtgccaggaaaaaacttaggaca<br>gataaagtagactagatagagtgagaagaaagtttgcaactgtggcaagcaaaggaggaaaatgcccaaaattcccaacacaataaagcaaggtttgata<br>ttgtgtaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:KIAA0774:NM:001033602:6/14	
0	chr13	41053117	41053437	1000406	0	-	pAlu13-41091650; 13462; RIP_Alu_chr13_041_01	NA	NA	SINE	Alu	Ye5	aaaaagaaacttaaacgtattgtttctgtgaaggcatataaaccatatcctagggcagtggttttctaacagtgtaacaagaacctttgaaggatgtttg<br>gcagtggaggggggcagtgagtaggcagcactttgtgccccattgccctccatccccaattcaactacaacaatttcacatgtatagataatgcaggatg<br>tttcataagctgggcttttgtgcagtatttcatttgaaggaagggttccactgctaacaaatttttaaaggaaaggaagaattagaaagccattgtgtta<br>gggattatgtaatgtactggattattatttctcacaggctctgagggctttctttctggaaaaggtgccattgaccctctgatt<font color="green"><u>TAGATGACTCACTCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGTAACACGG<br>TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACTCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGACGACAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA<br>ATAAAATAAAATAAAATAAAA</font><font color="green"><u>TAGATGACTCACTCTC</u></font>ccttgacagaagaaaacaaggcattaggtgttcctaaaactaagagaagcaggctttctcatt<br>acaattcttaaacataccattaagtttatatagaatttggggggtaggaatggccttggaaattattttcaccaacctttttgttttacagaagagaaaa<br>caaagattcaaagaggttcaatgctttgcccaaggtcacaccgttacagtgcaaagccagcacttctgacttccacttcagggctcttagttgatgtttc<br>atccctgtttcttatagctgttttatctctgttcaatttgatttttttaaactgtaattcaggagcaagtgtatcatttatgtaaggtactctgtcttct<br>cctacccttggcacctcacca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:KIAA0564:NM:015058:42/45	
0	chr13	72972923	72973240	1000407	0	-	237949; RIP_Alu_chr13_072_01	NA	NA	SINE	Alu	Ya5	tctggagagccaccgtttcccagttcatagatggtgccctctcactgtgtcctcacaaggtggaaaagggagaactccagtgctttcagccccttagcag<br>ggtactcatcccattcatgaggctctacccacctcctaatgccatcacattggtgaataggtttcaacatatgaattttggggggtacacaagcattcag<br>accatagcactttccaaggatcgctttgcagtttcctattctcagatgaacacattcctaaatgtaacagatctgaaagtgctggataatttgaatgaat<br>gctggttacgcaaagaaggcatatatctttgtttgataaaaatttgttacaattctctgtgaatggagaaaagatttatcagataccttt<font color="green"><u>AACAAGATAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>AGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTACGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AACAAGATAG</u></font>aaaaaagccaaatgcttctctcttagataaatagaaatgaaggtctgtcttacctattagaccttgattgta<br>agtcattatctcacaggggtctgttttacttaactaggcccaacatccaggtcaggaagagcttttcctctagccgattcatatgtgtattcacctaaca<br>gatgctttaaacacatattctctgcaaagctgtatggcttcgctaggagtagagaacacagagatgaacacgatagggtctttgtccctgataataactt<br>aaagatccatcaaagttgtacagtaagtaacaataagatttctgttacagcacagtgccaagtctgagctcctgcctcaactttcacagattaatccttc<br>atagaaatacattaatca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	78559083	78559403	1000408	0	-	6509; pAlu13-78597629; RIP_Alu_chr13_078_02	NA	NA	SINE	Alu	Ya5	aagctgttcatgcctaacttacctttctcaatctatttcacctgcttccattttttttttttgtttagtaaacatctgctttctattagattgttttatc<br>cccttaaccttcataaatgacaattaagtccatctagtctgtcaatagcatgtcatttatttgttgctacagctgagcctgaccttcattgattttattg<br>gagtaatttgctggaaatgattttttaatgttggatttattgcccaggcacttcattgtcagataattgaagtaaattgtatttttttttcaaaccaaaa<br>gcaagaagtgcaggaaagagatatatatattattttgaataattatttcctattgggaaatattactattgaggtagagagacatt<font color="green"><u>AAATGTGATGTCAT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATGTGATGTCAT</u></font>atacttttcaagtttgcaaacatagattgttcttgagtcgtgcacacttttctccctttttggct<br>tttccttaaggatagctgaggtagaaataggagttggtaatgaattacattcaaaaatgatgttgcaaattagattagctatatacctaaatctatcaag<br>tagctacaccaccacctcttacataatgggccttgctattgtgatttaactgcaggttaaattataaatatgctgatgttacatagttaatcttagcttt<br>tacaaggtattatcttattccctcagtatcagtgttaacaaggcttttttatgttgtgcgtttggttctccaaaaattttgattgtctgcccagatgata<br>attagtatttcagtccctaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	79097095	79097096	1000409	0	+	22268; RIP_Alu_chr13_079_01	NA	NA	SINE	Alu	Yb8	gaatttttttcatattttactggccagggacccactgatgtaggtctcaagaagttatatgtatcagaataactttggagcttcgtcaagttattcacat<br>tgaccccttgccccagatttgacatatcccccttttcccaggctgggatctactttttctaagttaatacattgtgtgtcttccccaggattttggcagg<br>tatcccatagtacatatcaaaacatgaaaggggtaaaagaatgggggcagggcaaagttgtatagctttgaaatttctcacgggacattctgatacccca<br>gccttcaaccctcatttgaagacagttcttctctacatagtgttaggagggcttacaagtaattttcagggactcacgttaactta<font color="green"><u>AAGAAGTACAGGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AAGAAGTACAGGTG</u></font>cctacagattgattggggaaataagctggggacaactaagtaatatggaggccatctatgtagcctgaactatcattg<br>cgtgttaaagtaacagattcaccatcattaagatttaggcaagaggaagacatgcttagctttcaatgggcaggaacctgctaagttactgaactttcaa<br>taaaggatatagcgggtctgattttgcttggccgtttttcagattttctgtgctttaaaaagattttgtgaatcacagaatgtcttctgtttcgtggagg<br>agttgctgtgaaccttccatagaagatggtatgccattttaccactttgtttataaaatttattcatattggtatattcattcaattactcatttaataa<br>attcttag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	81787213	81787538	1000410	0	+	Yb8NBC480; 239124; pAlu13-81825749; RIP_Alu_chr13_081_01	CCTCTCTCACAAACAGTGCAG	TCGCAAGACACAGGCTATCA	SINE	Alu	Yb8	ctcattattttgaacactgcacactagaaaaatgcttttttctctctctcttttttggtagattgtgtatgaataatgggataaaaattggaataaagag<br>aaagtatatgatactcaccttcatctgtcttcagagttttagatgatctccagtctgtttttctaaggttagaagacaagacaagtatgaataccttaca<br>taacacctactgtagttaattttaaaggtcactcttttttttttcaaaaataaaaatgacaaaaagttactggctcatctcgtcttttctgcttttcctc<br>aagggccaggtctctgagttcctctctcacaaacagtgcagtgatattatgtattactcttaccaatttgtgcatgtgatttt<font color="green"><u>AAAGATGGTATCATTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGATGGTATCATTGG</u></font>gatactttgaataatgatagcctgtgtcttgcgaatttagctaagaatctttcctct<br>ggaatcatttcagatgaacagtaaggtaaaatacagtgaagacaggaaaactaccgattctttgaaggcagtgtggcagcctctatgtcctagttttgtt<br>ttctgttaatgtttattcaaaatttaaaaactcaaataaaaaatggtattccaaattttatgcctattacaaattaactacaatagaaaaaatagagtat<br>tatattctcttctaaacttagttagggtaacataatttaaagtgtattaatttgtcatgaattattcaatcttgtttctactattgtggtgttctcacat<br>gctgaatattaacttgtagacatcaa	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	65	457	114	NA	intergenic
0	chr13	89219385	89219521	1000411	0	+	16768; RIP_Alu_chr13_089_01	NA	NA	SINE	Alu	Y?	ctattagttgtaccttaaagtttctgagcctgccttattaaattttcttttacatttcatatgcttttgccaatttgcagctctttctaagagaattcca<br>caattccatattccacatgactaataagttgtatccattttgttctttgacaaactaactagtttatttatgtgtgagattaaaactacatgaagtttct<br>ggaattataacggttcccagaattacacattttgtgataaaattagtggttctaaagctatatggatagttaagtaagaattcccttcattttcttgaaa<br>ataataatagagcccatgattttcccagccaactggccctcgggattttcttttggaaatggacctgtttactgaaaattaatt<font color="green"><u>AGAAATGACCCACCTG<br></u></font><font color="red">CGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC<br>TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATGACCCACCTG</u></font>actttgactaagaaatttgctgaatttggcatctagaatagtatttt<br>gtttgtcttaaataatattttacacaaggcgagattagaaatcatacacacacacacacacacacgcacacacacaaaaagaattgatactctttgataa<br>ctttttgtcatctgctaacaaatgcttgtatccatgacagaatcctgcctgagaattttgttctttgtaatatactacctggagggaacactgtagtgaa<br>tgcagcctcacatccttcacctacctttattagaaggttacaccacacagcaagaagaatctaatgattttgaattaccgaaattgtctttgctgtttca<br>taacagcgtataaaattaattgtccaaaaccccactt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	89348563	89348564	1000412	0	+	5444; RIP_Alu_chr13_089_02	NA	NA	SINE	Alu	Ye5	ttctcatctattgtgttctacctttctttgaaagcctactacttagaacaggctaaaggtggtgcagttctaatgagctagaatttgttaattaagtggg<br>gagtttttcaacaccaactctccaatatggccattgaaaggatggaagcatctgagctatggagaaaagtcactgcaacatacagactttgcagagcagc<br>aaaatcaaaagtaatccaagcagcttattcagaatcagaaaagacaggagaattaggcacctcaatgagctgactcagaaacaggcacaaatcataactc<br>tttttctctaaatattctaggaaaagaagaatccttgaaagtctatgatttcttatacctaagggaatgtgtatcaggagagaggt<font color="green"><u>AACAGGAGACAGAT<br></u></font><font color="red">GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGTCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATA<br>AATAAATA</font><font color="green"><u>AACAGGAGACAGAT</u></font>ctgagattaaagcagttttccttgaaatccattatcagcagatacgaaaataccaattttaagattgcctgtttcatt<br>ttggggccagtcctcctctttagtcaaactttgtacccctgggctgtatgttatgacagttgtcacacccaccactgatccaaacaaagaatgtctggaa<br>gagttcaatttaattctgtaattgcaacagaaagaaacagatgaaaaacatagaaaatgcttggttgccatttgccaatttaggcaactgctctgatata<br>atatctactgttcaagcaaatactaatcacctacatatctgagtactaacttaaatgtacttttaagtttctgataaaactcttatgagcacatgtcaca<br>ttcttctg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	91077266	91077584	1000413	0	-	22344; RIP_Alu_chr13_091_01	NA	NA	SINE	Alu	Yb8	aaacttcaatgagtccaagtagacaaactttattttatatttcaagtacctgtttcaagattcaacccaattagagatctccccagtgtgtcattttttc<br>aggccaaggacaagaatcaaataatcctttttattattattcaaacaccatctatagagatttagagtctgtactactgagaaatcttttcctattccta<br>atagatatgtctggagagtgacaattacaatctaaggtgtaaaagaaaaatttaagcaaattcttcctcaaagaaaaaagctcctcacactgtcttccac<br>aatggttgaactagtttacagtcccaccaacagtgtaaaagtgataccatttctcacatacatcatggaatactatgcagccat<font color="green"><u>AAAAAATGATGAGTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGCAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGATGAGTTC</u></font>atgtcctttgtagggacatggatgaagctggaaaccatcattctgagcagactatcgcaaggaca<br>aaaaaccaaacaccgcatgttctcactcataggtaggaatttaacaatgagaacacctggacacaggaaggggaacatcacacatgagggcctgttgtgg<br>ggttgggggaatggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacgtgtcacatgtttacatatgta<br>acaaacctgcacgtagtgcacatgtaccctagaacttaaagtataataaatatatatataaacaaataaaaaaataaaataaaataagctcctcaatcac<br>tatgtctaaaaacattatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GPC5:NM:004466:2/8	
0	chr13	97492756	97493061	1000414	0	-	238705; RIP_Alu_chr13_097_01	NA	NA	SINE	Alu	Y	ttgcagtgagctgagatcaggtcaatgcactccagcctgggcgacagagtgagactctatttcaaaaatcaaaacaaacaaaagaagatgggcataaaca<br>ttttgatgagatccaatttaaaaaatgtttcttttatggtctgtgtttttgatgtcatgtcaaagagctctttgcctagccttaagtcctaaacacacct<br>tcacatgccttcttctaaaagtgttttatgtattccattaacattcatgacttttttttttgagacaaggtgtccttatgttgtctagtaggcaggccta<br>gaactcctgaactcaagggatcctcctgcctgagcatccccagtagctggtcaaagccaccatgcctgaccatggcattttaaaatta<font color="green"><u>ATTTTTGAATCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAATTT</font><font color="green"><u>ATTTTTGAATCC</u></font>actgtgaggtttgagtcaaacttcactttgtgcctacagatgttcaattttccagcatcatttgtgagatgactatctttcc<br>tctattgaattgatttgcacctttcctagaaattcattaggcctattgcactggtctgtttctaggttctccattctgttccattgatttatattctgtc<br>cctcttctgctgccatgctgtcttttttttttttttttgaaagagagtctcgctctgttgccctggctggagtacagtggctcgccatctcggctcattg<br>caacctccgtcccccgggttcaagcgattctcctgcctgagcctcctgagtagctgggattacaggcacgtgccaccgtgcctggctaatttttgtattt<br>ttagta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	102729654	102729959	1000415	0	+	pAlu13-102768190; 12423; RIP_Alu_chr13_102_03	NA	NA	SINE	Alu	Ya5	caaggagggaaatttaggtcatcatctgacagaaatatccttttgcaaagaaagttgttttagtggaaatgagactaagttttccaggttgcctgtctgc<br>actgatgaaattaccttcatcaaaacatgtcttttgggcttatgtcaggcgctcaaagagacttgtttgttgccatggttttgagctgtccccataaggc<br>tggaacagacactttctaggtattggagtaaggtggctctggggttgagaacagtgacaggtgagctaggagcagcattgtcagaactatgcttcctgta<br>cccctgctcttctcccctgttcccttcccaagccacgcttcacctaaacaaagcaggtgtgacgttagatggagagaacattactacatat<font color="green"><u>AGAAAACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AGAAAACCT</u></font>aatttcagtaaaccaggatttcaatcctcattctaccacctcccagtgacgtgactttaagaaatgtacttatgattctgaatat<br>cagtttactcaagtatattctccaaagtgggaataacctttgtgaatcactggaagatgtgaataaaatcatgtggtaagtactttgcatgatgttatca<br>tgataagtcctctgttaacattaatttcccttccctttttaggttcatctaagcctttttatcctcaaagaataggtaattaggacatgctatctttgat<br>gcaaacagtttagagccatgtgtaaactaaacaattaaggtgagcagagaccaggtaagcagacacaatgattaggaaacagtaagttttagccatcagc<br>caattg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	20605985	20606297	1000416	0	-	pAlu14-19526174; 55315; RIP_Alu_chr14_020_01	NA	NA	SINE	Alu	Yc1	ggggaccctcgagtcaccgacactctccaggttctctattacgagggcccgcgagctaggagagtgagattttgctaccccctggtgtccattccgtaaa<br>tactgcccaggggcgggttacaggggccagtgtttaaaaaaccttattcacctgtctcaaacctagctcatctattctcggtgttgagagtgtctgaacc<br>tttcctcaccaggccttccattccttaaactgcagcaaattgtttagggaacacttggtagggtccaaggttgtccattggactccaaggctcactactc<br>ttaggtagtggaatataaattaatctggctatgggggtccacaaactcctggaaaaagggagtggatcatttttttttttcatggag<font color="green"><u>AAAAAGGGGAGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAGGGGAGCC</u></font>actgaaagtttttgagctggtggggtaagggagtttggatagagaatcagggatgcagttaccccttctttcca<br>ggagttttaaaatctgtgctaaattacaatggtttattttaagtaagtaagtgacatgtggttgcagcagttaaataccactttctccaaagaatgcagg<br>ctcttacctaaaagtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtacacaacagagtatgtgttgatacgtgtgtttttagtgggggaatatgaaagggt<br>aaagttataagggagaaattagaggctgggaatagaccagacttagaagccttctcattcacaaacagttcttaccatatttcacccatttaagactctt<br>tggggcttctcaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr14	25771459	25771758	1000417	0	+	14794; RIP_Alu_chr14_025_03	NA	NA	SINE	Alu	Ya5	ggggctagtccatcccatctaccatgtgaggacacagagagaaggggctgtctaagaaccaggaatccatcttccaccaaacaccaaatttgccagcacc<br>ttgatcttggaattgccagtctccaggattgtgaaaataaacttttgttgtttataaactacccagtatatgatattttgttagaatagaccaaatggag<br>taagacaccaaataaaataataaatttgttacaaataatttattttcaaattggtttttgtttatgcaggctaaacagtctaaaataagaaccatatggt<br>atttgttagtcctgagttgtttgtttttctttttgcctttacaaatttctaaatcttgttgtaagatcaaatgtatttataaataaatt<font color="green"><u>GAAAGAAAGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GAAAGAAAGAA</u></font>aagaaaatagaaaaagtaagcaaccatttatagtatatatgttatatataaaataaaattgttataaaattaaatatactctctatttt<br>ggatttttttcttaatatacgaaaaccattttccttttccatgaaatatttcatcatgtcttttcaatagtttcctagtactatattatctgttaaaaaa<br>tgaaagcttgacttttttgaaaatttctttatcctttgaaactctgagcttttatctataaaatagaatttgtggggagagagaggcaactaaggctgag<br>ctatgatggagtgtctatgaaaaagagtatgttcttgtcagtgtaactaattctactgaggactagaggacagtcacaatgtgaaactatgttttacaac<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	39662196	39662197	1000418	0	+	31370; RIP_Alu_chr14_039_01	NA	NA	SINE	Alu	Y	tgcatatgaaacctcttaaagagccaataagattaaaaatagatcaggattaaatagggtattaagatttctactaccagcataaaagtgtaattcattg<br>tactgtaggcagtgggaaagaggttttatggttaggctttccttttttgatctacacaagtcacactggacttagtgaagttttcacactacatataaag<br>cagctgaatttatatcttcagattctaaggttttctacatcctggataatgtttaccttttagtgtaatatacagccaccccacttaagaaactggtctt<br>attaacctttgaaaatctttaagccttaccctgtgtttaacatattcatgcttcactgagtaatgttctgtgattcattctcatcg<font color="green"><u>AGAAAGAAAGAAAC<br></u></font><font color="red">GGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTC<br>TCAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGAAAGAAAC</u></font>tttaaagctagctcaagttcacatttaccttcttagattatgccatgacagatttcagtgcttctgat<br>gccatctgtttggtaggaaagacatttcctttgagaggcaggtgaaagggcaacaagaaagtcagctagtagataatctttagtttagggcctgtactct<br>agtggtaaaaagtcattctagaatttaatgattactttgctttttctgtgcttcctttcatactgaccgagttgagcatatagctgggctaggcctgacc<br>aaaaaagaaaaaaaaaaaaccactttggcactttgcaagaaagacaagttgtctctgtttaaggctgcttttaccatgggaaacaatcagaataaaagat<br>atatagtagataagaata	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	41556086	41556386	1000419	0	+	20305; RIP_Alu_chr14_041_01	NA	NA	SINE	Alu	Ye2	aaaaatttaggctccacactgaacatcctcagggaaagatgaaagaataaaatgccgtagagattgagatgcacagctggataatgtagagatagatcat<br>ttaagtcaaacatgaggtgaaagctgggaaggcttttgcacctgtgcttgactggatgctgaatttcgaacaagttttctgaagggcagagatttttgtg<br>gaagcatgagttttccactacccaacatagaaaggataaaagaacttgcagttttaggagactagatttacttttttccccaatattatggcctgttctg<br>gaagtaagtgacagaaagacaaagatcgaacttatgcttacatgaacagctcagggccaaggaaaatgtagccaaatttagcacac<font color="green"><u>AAAAAGACCTGATC<br></u></font><font color="red">GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATACTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAAGACCTGATC</u></font>ttacgcaaatttaagcagaagagaagcaacctgaggaaaaacaacattagttaagcaaaacaaaataaacagtaatattgggtgg<br>ttagagtgaggtccctgacccacattcgcgtcttcatccataggggagagttagccattgggagttgatttgacatgattgtactccccgcgaagacatt<br>ggtaatcagaacactgagcttcaaattagggaagagttaggtgtagctctgcagaatcaggaagtaccactggtgtcggctattctccactgttatacac<br>agaaatagcaagaaccaagacatcccctcttattgttgtaaaaaatgtgaacgtcctctgagtgacagtgccgggaaactggcaaagtctccagaccggt<br>g	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	47896573	47896885	1000420	0	+	Yb8NBC466; Yb8AC818; 14503; RIP_Alu_chr14_047_01	TTGAGGCACTAGACTTACAGAATTG	CAGGAGCTGCTTTCACCTCT	SINE	Alu	Yb8	agaagtctgagatcagggttcctgtgtagtcaagttctggtgagggacctgttacaggtttgcagacagccacctttttgctgtgttctcacatggtgga<br>gagtgagctctggtatctctttctcttcctattagggcaagttctgttgagttctattgagtcagggctcaactcttttgacctcatttaaccttactca<br>tcaccttaaagaccctatctccaacacagtcaaatggagcatgacagcttcaacacacgaaatttagggagacacaattcaatctataagcactgtttcc<br>ccataatcatgtacatatgaatcttccctgtaccatcaggagctgctttcacctctcccttaattagattcctagattattaaaaat<font color="green"><u>AAAGTACACACCT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAGTACACACCT</u></font>tttcaattctgtaagtctagtgcctcaaaaataacaaatgtttgtttaaccaaaaatttctggttggatgtaca<br>aaaatcatctcagctatcctgtaagaagagaaagttaactgcatgtgaaattaattgtaactgaagaaattgccaatatagaccatagagcaggccatgg<br>tctacaagagacatggtagttgaaagacctccagtaatctacgtatttcattaaaatatacttatgcccactggcctcaaacatctctgctatttctaaa<br>aatctcttcaatttgtcagaataaccaatgacaaaataatggagaactctgccataaaagagcaagagaaaaagtcacatagtccaaaatgaataacctt<br>ttaatttacctta	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	427	92	NA	intergenic
0	chr14	49028207	49028344	1000421	0	-	12195; RIP_Alu_chr14_049_01	NA	NA	SINE	Alu	Ya8	ccaaagagcctcttgttttcctggcccctccttaacaatttacccgatatcaatctactgctgataataaatgaaaaaggtaatgaaaaaggggagtttt<br>ttttttttaaacaaatgtcaaaaaaaccctttaagtatttctgacattaaaaaaaatgttgttggtccttccttatttgcatggagctttatgtggttca<br>gaaagcccatctgtaatccatttgagtggaagtcccatttgtcactgctgtcaggatggtaaaacacatttgaaacctttttgctttaaagaaaatagaa<br>ggcttttctgcactttacattgagctgaagactttgccactctcagggaaatgtcaattctgagaaagacttgtgcaaaatgagagt<font color="green"><u>AAAATAATTAGTC<br></u></font><font color="red">TAGTCCTTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG<br>GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AAAATAATTAGTC</u></font>ttgaaaagtgattttactttttgcttaaacacgttccattttccccaaa<br>gtccccaggttcctaaaacaacaagaagtcatgagagggtgagggttggggttgtcgtcgcaagcagtcttgacttcatttatccactcaatggagggat<br>cagcagcatgaacattacaaaatggcagagaatccacacagcacctccatttagcattggggtgtgttttatagccgcttttagaataaacattttgggc<br>caggcgtggtggcctgtaatccctgggatcacacctgtaatcccagcactgtgggaggccaaattgtgcagatcacctgagctcaggaatttgagaccag<br>cttggccaacatggtgaaaccccatctctactaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr14	67446766	67446909	1000422	0	+	7444; RIP_Alu_chr14_067_01	NA	NA	SINE	Alu	Y?	tcctcccatcttggccttccaaagtgttgggattacaggcatgagccaccacatgtggccaaaaaatactttttataaatacctcagttgcataatgttt<br>tctccattatcaacttgacaggcctttgtttaaggtttacggttataagtacttatttgtgtaaaatttaagatctatcaatatgtctaatttttcagaa<br>atttttttcttcaacattttagcctttggcccattttcaaattgtatgtaggccaaggcatacacagtggacattgtgcagctgcgtatacgaatatagc<br>caacattaagaggtcccttgcaataatgctgtttcagaaaggatgtttactgttcttttgaacatagttttcttgtttctgctttaacttat<font color="green"><u>AAATATTT<br></u></font><font color="red">CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG<br>ACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATATTT</u></font>aaataaaaataatgtttcactgaagaaattgtaaaagtgaactatatg<br>ttaaaaataatctaggaaactaaattactgctattccactttgcagtttgatattgctcattttttgactcgtaaagtcagtgtcgatgccttttaactt<br>tttttttaaaattttactggatttgtattttaccatatttgtgcagtgactttgattaggtaccaattgaattcagattaaaaagcataaacctacatct<br>gaagatagcctagtataatttatattgtgcatcgttctgattttgaaataataattctcctttacaacgttagggctgaataaaagatagaatccttatg<br>aaatagtgagcccaatgtcattttttttttttttgagtcagagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:RAD51L1:NM:002877:7/11	
0	chr14	70507590	70507913	1000423	0	-	pAlu14-69427783; Yb8NBC9; 239173; RIP_Alu_chr14_070_01	GTCCCCACCAATCCCTATCT	TGCTCAAAGTCCCACAGCTA	SINE	Alu	Yb8	tcaaacctgacaggcatgctcttgctttagggctttgcccttgctgttccctctgcgtggagggggcccctcccctcagatatcctgagagctcactcct<br>ccttcttcaggtctttgctctcagagaagcccgccctcaactactctatttaaaattaaaatttccctagtccccaccaatccctatcttctgtctctac<br>ttactacagtatatgttgatcgctaccagtatgattccatattaatagtagagaagccacatgagggtggaactttttgtctttttgttcactgatttat<br>ttccagtacttaaaacagtgccaagagtactcgacaatatttgttaaatgttaaacatatggaaaaatgttgcatgataaaagcaagtttt<font color="green"><u>AAAACTATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTATA</u></font>taaagtagtatagcatagattttaaaaagcataattcaaaactagatttgaattataggactgtcac<br>tttgtagctgtgggactttgagcaagtttcttataatttctctctaagcaataacatgcttatctgtaaagtgagaataataacagtgccaacttcaaac<br>gtttatagtgaagattaactgggtaaatgcatataaaatgcttagaagaggacttaaaccaggggttgacaaactaagtcccatgaagccaaatccagcc<br>ctcaaacttgtttttataaaccaaattttaggatggcacagccatgcccactatttatgtatcgtttatgactcctttcactctacaatggcagagttga<br>gtagctgagtagcaagagagacca	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	655	322	NA	intron:PCNX:NM:014982:5/36
0	chr14	78723691	78723778	1000424	0	+	2570; RIP_Alu_chr14_078_02	NA	NA	SINE	Alu	Y	tgtaccatgagcggagtcagagcccctcttgaaagcaggttggtaaatttccagaaccacttagcagttttcataggtggcaaggcattgtattgttatt<br>tttattattgttaggagctaacatttgtttccaggaactgggctaaatggttcaaattcattatctcatttaatctttacaatatttctgtgaggtagaa<br>agtattgttatctccattttagagatagcagttatagaagaggcatctggagctaaaacagattaaatgaccttttccctcaggttcagagtaagtgtca<br>tattgcaccccagaataattctgtgctcaccataatgatttacccttctaaaaggtaatataatgcaatttcagaaattaatga<font color="green"><u>AAAAATGTGTAAGCAT<br></u></font><font color="red">AGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGTGTAA<br>GCAT</u></font>aagaaaaaatagcgaatgtccttttctagcatcacactagattttacgggtgattacaggaagacccttttgagattttcagcaatggacttttct<br>tggatgagacggaagatgctctcagctggtgtgactaaattgtttgcgacttgaggacatgggtcatgccctctgtgtgtaccactcactatatcctcat<br>cacagttcctgcataaagcagagattcagaagggtcagtcgagaacatggatgacaacccaacactgtaacccagcagcttgtgtcttggtgtaacattg<br>gtaggttttgtttgcctttacatttttaccataagaggtcaactagagtttctatcttgttacaagttcattacacaggtatccctta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NRXN3:NM:004796:12/17	
0	chr15	37307406	37307734	1000425	0	+	14146; pAlu15-37099151; RIP_Alu_chr15_037_02	NA	NA	SINE	Alu	Yb8	ataagagttttaagaatactgtgccagatagtaggggcagagaccaaatatatatttcttattatatcacaatatcacagatactaattatatgtagaaa<br>acttcatattaactccagaagttagaaacgtaacaacagtaagatctcaagaaaaatgaaagagacaataaagacaaaaccagaaattaaggaatgagaa<br>aataggaacaaggagagtggaaaaataaattcaggacatgaataataaatacgagtttgctcaagaaaaaaatcaaataattacacaaaagtaaaattgt<br>gaaagacagcataatcaaagacacagaggatatataaggaattactctactcacataaattgaagatacgggtgaaataatttttaaaa<font color="green"><u>TTTAATTTATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAT</font><font color="green"><u>TTTAATTTATC</u></font>aagaaagactatagaagatgtagaaaacctgaatataccacaattctccgttgataaatt<br>tcaggaagagaacagtggagaaggtggtaagaaaaatataattataagctattagttaatcagacaaaagaaaggcaattagaaactctaggaggaagaa<br>aaaaagaagctgcacttcaaggttacacaagtaaaatgaacaaaaagagaatttttaaaagttgaggcttgtaacattctcatttgtgtggcataggttt<br>acaacatggtattacattcccaaatctgcaggtttaattagctcattttgaacaatagtttgaaattaaaacattacaacttctatttattggctttcaa<br>ttttcaagatccatgtaagggaaagcaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	39805041	39805359	1000426	0	+	2365; pAlu15-39596787; RIP_Alu_chr15_039_01	NA	NA	SINE	Alu	Ya5	tatgggaatgggcagtttacttaaagaataaaaccagtagtgctgggcgtagtagctcatgcctgtaatcccagtgactcaggaggctgaggccgcagga<br>ttgcatgaggccaggagttcaaaacaggcctgggtaacatagtgagacctggtctctaaaaagaaaattttttttctttatattacctttaattaactct<br>taacaactaaacctttttttaaagacctaaaatttatttttaaagacctatgcaggcatggtggcatgtacctgtagacctagctacttgggagcctgag<br>gcaggaagatcactttagccaggaggctacagtgagccatgattgtgccactacttgggcaacagagtgagacttgtactcttaaaa<font color="green"><u>AAATAAATAAGTA<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA<br>CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAATAAATAAATAAAT</font><font color="green"><u>AAATAAATAAGTA</u></font>aacccaggagcctcttaacctagatcttctttttaatttagttaagtaatcaatgcatattttccttt<br>gtgcacattttttgggggattatttattaacaagtaaaaatgcatatattggtctataacatgacattttgatgtaaattgtagaatggcatacagaact<br>tcttgatagtatgattttacctcagttgggtttcattgcgtctatattgatataagtgtttttactcctgtactgagttcaggctgtcttttgattacaa<br>tttgttattagaatgcagtagtgacagcttggtctctggagccagatagacagggtttgattctggttctgcctcttactggttggacatccctgcctct<br>cactggttggacatccctg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:MGA:NM:001080541:9/24	
0	chr15	41447734	41448045	1000427	0	+	Ya5NBC241; 238740; RIP_Alu_chr15_041_01	GGTTCCAATAGAGAGCAACAGAA	ACCTTAAGCTTTCCCCCAGA	SINE	Alu	Ya5	gctattgtcttggatgataagatcagaattcaaaacaacctcaacaaattttaagtgaaatggtaacagaaaaaagcatacaacatggagatcaatagac<br>tacaaagaagaaaaacaagttctacaaaaatcaagtacaagaataatcaactaggtataaaggcattggggaaagctatcagagtcctggaagttaccag<br>gtgaacaaaaaaatataacaggttgggctatactgatacaagacattgcaagattctgaagtaaaattcttacttagcttctaacagactttcaggaaaa<br>taataaacataatttagttccccacaattaacatgatatttggagaacttaaaggttccaatagagagcaacagaaacttaggttt<font color="green"><u>AAAGAATGGATCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAAGAATGGATCTT</u></font>ctgggggaaagcttaaggtaacaaatatagtttaatttgaagatggaaaacaaccaaaaggaagatgtgccttc<br>aagtatagaaaagaatttttatctagaaaataatgacctatactatcatcattaccaagaggaaataaaataattccaagttccgataaaaactagggag<br>ccattctcttgtggacttatcaagaggtaatatgaataccagaggctaaactacatgtcaacaaccacatattctgcaatttccacttactcctgaaatc<br>cctttcccactcactattcccaaccctacttcccaacttggaatggcagtctatcttcccatatgaatctactcctcaccgctcctttgaaaaggtttga<br>gcttctcctttg	UCSC	<UL><LI>Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11179020">PMID:11179020</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	392	66	NA	intron:ZSCAN29:NM:152455:2/5
0	chr15	43855273	43855607	1000428	0	-	pAlu15-43647033; 238357; RIP_Alu_chr15_043_01	NA	NA	SINE	Alu	Yb8	tcagattttcacagcaagcttgaaagcattttgaaggttatagtgcatccttaataagtagggagggacattctagaaatatgaaaaaaagacatgcttt<br>aaaaacaaggactgagcttccagtaatggccaaataaagattctaccagaataaacacccttacagacagctactgtaaaatatggacacattataagaa<br>gcagctacatggaggcacaagagggtgatggaaggcaggtagagtctagggaggagtccatgcaccagggaagacattacatggagtaggtactccatgc<br>tgctgcttctagcctgggggtaggttcagttagcttgcatggaacagcaggtacagtgaaaaataaacacattttttctggcctt<font color="green"><u>AGAAATCTGAGTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATCTGAGTACT</u></font>gagtccagggcaaccgcagtcactgaagaaaagggaaatttgggaggaaa<br>aacagccaggagggggatacccaaattctgcctgcccacatctctggctggctcctgaatcacacatgcatggagcagactcaaagcacctcagctagag<br>gtaaagaacctaaagagagtttggaactggttaaaaaccaaaaatagtttggagctcatatttaaccaggttaattgtgtgctaaaaggaaagaaacatg<br>actcatcaaaagaaattaacaaaatccagtatctacaacatgaaatttattgtgtacattacacaatcagaaagtactcaaaatataacaaatcaggaaa<br>agtgggagccctaacatgacagtcccagaggagct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr15	49685009	49685332	1000429	0	-	238258; RIP_Alu_chr15_049_01	NA	NA	SINE	Alu	Yb9	aagaacaaaactcccatctcacatccacacccccacacacacacatacaaaatctctataagtgtgttggtttaattctaggtctctaatgttatgtgga<br>ttaatcttcaagatttcagtttaaagtgttgggtagtttattggagtcccatcttttgtcagatggagcactttcatttttgttcctctagatccaagag<br>accatcaaaatgcagctcagttttaccctcactcttttagattagcaaatgctgttaggacaaattggcattcagtgctgagcacagccttatgttctcc<br>ttttctcttagattttggcccactaattcctcacagtattttttatttttttagctctttgagtgtttttacatctatgttcatt<font color="green"><u>AAGAATATTAATCTG<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCGGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATTAATCTG</u></font>tatgggctgggccgggtagctcacacctataatcccagcagtttggaaggccaaagcaggc<br>agatcacttgaagtcaggagttcgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcacacgc<br>ctgtagtcccagccacttgggaggttgaggcactagaatcacttgaacccaagaggtagaggtggcagtgagctgagatgatgctactgcactctagcct<br>gagtgacagagtgagacgctgtttaaaaaaaatacatatatttatatgtttttttcccccgttgtactgtttttgtcgagttttggtatcatgctaagat<br>gttttttgtatatttcatgaagct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:DMXL2:NM:015263:1/43	
0	chr15	62420247	62420556	1000430	0	-	10196; RIP_Alu_chr15_062_01	NA	NA	SINE	Alu	Yb8	ccaggagttcaagatcagcttgggcaacatagcaagactctgtctctataaaaaataaaaaaaaattagctgggtgtcatggcacgagctggtagtctca<br>gctactcaagagattgaggcaagaggattgcttgagcccaggagtttgaggctgcagtgagatctgatcatgccactacactccagcctgagtgacaggg<br>caagatgtctttgaaaccaaccaaccaaccaacagaagaaataaatgacagtttaataaatatttcaggccgggcactgtggctcacgcctgtattccca<br>gcactttgggaggccaaggcgggtggatcatgaggtcaggagattgagaccatcctggccaatgtagtgaaaccccggctctact<font color="green"><u>AAAAAGATAAAAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATTGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAAGATAAAAATT</u></font>agctggacgtggtggtgtttttgagacagtgcctcactctattgcccaggttggagtgccgtggtgtgatcatgg<br>ctcactgcagtaccaactacccaggctttaagtgatcctcccacctcagcctcctaagtagctgagaccacaggcacacaccaccatgcctggctaattt<br>ttaaaaaactatctgtagagacaggattttgccatattgcccagtctggtcttgagctcctgggctcaagtgatcctctggcctcggccccccaaagtgc<br>tgggattacaggcatgagccaacatacatgaccttaaagtggtttcacagaagttctacctagcaacttcattagccctttgctgcaaggtaattaggct<br>gcccagaata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CSNK1G1:NM:022048:1/12	
0	chr15	79179642	79179643	1000431	0	+	280; RIP_Alu_chr15_079_01	CACCTTCTCTGCCTGTCTGCATC	GACACTCTAAGGTATCTGTAAGGTC	SINE	Alu	Ya5	tagacctaaaggtaggtaaatcttcctctcctactatcttcctcctcacgtatatttccaaaggttttttttccctatatttatacaagtaattagcttc<br>cgtccatttgtttcatcacctataaaataggaatgatctttgcctcatagatgcatgagtattaaagtacataagataatacatgtacggcatttaaagc<br>agtttgcaaacactcaataagtgttataagaggagaaaatttccacttaaaacttcttccaccttctctgcctgtctgcatcccaggtttttggtatagt<br>ctgggacttttgacaaagtttaatgctcgttaccatactgatgtattttttttctccaagaattatttaacatctgcattattttgaa<font color="green"><u>GAAATAAGTATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>GAAATAAGTATT</u></font>tcttagttctaagtttaaattatttcagtgctgattatctgtcctactgtaatacagtcttctattatagagttctttattttga<br>cgtacagatcaactgcatagtatttttatggaaaggtacggcagaggcatattgagaccttacagataccttagagtgtctttctattgctttaaataat<br>gaacaatggatgacttcttggggtttgaaatcttgctttgcaaactttccccctcagaattttatgtagctgctggagtacactgaggctagctccattt<br>ttcttccattgcctacaattttctacatgcctagataataataggcatcttcctttatccttgaaataaaaaaattatctactttttatctcttaagaat<br>tct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr15	99270605	99270899	1000432	0	+	5167; RIP_Alu_chr15_099_01	NA	NA	SINE	Alu	Yc2	ctagtttgtcatttgggagtttttaatggagtctctgctctacaaaaatagaatttagcattctgtttatggcttttatgttttgtgttttatttaggaa<br>agattataaaataattcacttattttcatgggttctggaactatttgttttaggaaatgacctaaaaatctcaatggcacctaccattcattttctgcct<br>aacacatagtaggggctctacatgattatctgtaattgttataattacaaggaggtgatggttttcctatttgatagttgatgaagttgaggctcaggga<br>aggcaaagaacttacctaagcaacatagttctaagccagtggttctccaacttgagtatgcatcagaatcacttggaggacttgtt<font color="green"><u>AAAATACAGATGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGCAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA</font><font color="green"><u>AAAAT<br>ACAGATGTC</u></font>tgggccccaccatagagtttctgattcagtaagtttattagtcttttattgctcctgcaagaagttaccataacatcagtggcttaaataa<br>cataaatctattatcttatagttctgtaggataaaaatctgacacaggtctccctgagctaaaatcaagggcttcattcctttttggaggttctcaggag<br>agaatctacttccttgccttttccatcctctagaggctgctcgcattcctaggctggtggccccatcctccatcttcaaagccagcactgctgctctctg<br>aacctgtttctataatctcattttgctctgcctctcttcttctgccagttttggggacccttgtgattacactgggtctgcctggatgatccagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ALDH1A3:NM:000693:12/13	
0	chr16	20686059	20686362	1000433	0	+	20638; RIP_Alu_chr16_020_01	NA	NA	SINE	Alu	Y	aaaaatgtttttagtgggcagaatagtgtgtattctgtgctacctgttgtgtaaaattggtggagaaataagaatctatactcataatttgcttgaatgc<br>acataaagaaaccctgaaaagataagtagaaataataatagtggtttcctgggagtgagagcaaagtgggcagctttgagactagaggtgggaggcagat<br>atttttttttccctctgtaccttttacagtttttttgagccatttgaagatattatgcgaaaaaaaattaaaaacagagagagacaagtagtgttgatta<br>cttaacttctttcagttgaaggaaacctgatgctaattctgttaagaggagagcagccaaaagcataggttgtgacttgccagc<font color="green"><u>AAAAAACAGGGACCGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAACAGGGACCGG</u></font>tagttccctctgtacccaatccccaatgccaaacagaatgacattgttagacttaaggtcttaacctgcagggcaactgg<br>gattcagagtgattttagttctgttcttaagagcagccttttctcctaaagcctgccaagaaatttttgttaattcttcccaggaacataacagacaagg<br>cccctgctctggtagaacttacatcacagtgcaaagatcagcaaactgtagcccatgggtcaaatccagccctctgcctgtttttgtatagcctttgaac<br>caagaatggtttttaaattttttaatggttgaaaaaataactaaaagaggaacactaattcatgacacatgaaaattaaatgaaattctagtgtcagtac<br>cata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ACSM3:NM:005622:1/14	
0	chr16	23436055	23436350	1000434	0	-	31594; RIP_Alu_chr16_023_01	NA	NA	SINE	Alu	Ya5	aaaataaataagtaaataaataaataaataggccaggcgcggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggcagatcacgaggtt<br>aggaaatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaacacaaaaaattagctaggtgtggtggcatgcacctcaggggttctga<br>gggatgagtaggagtttcccaggtagatgggtgttggaaggctattccaaggagagggatgaaaaataaagcttcacaaagttgttcaggactggaccaa<br>gagtaggagtcaggggagaggtagaagtggctgctgagaaaccaggcagatgtgagatccaaataataaaacccagattcaat<font color="green"><u>AGAAAAAAATTAGCTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA</font><font color="green"><u>AGAA<br>AAAAATTAGCTGG</u></font>gcatggtggcatgtgcctatagtcccacctactagggaggctgaggcaggaggatcacttgagcccaggaagtcaaggctgcagtga<br>gctgtgattgcaccactgcactccagcctaggcaagagagcaataaatcttaaataagatttattatcgtacttagcaggaagttcattggtaaggtggg<br>ctgcagggttggttaattacacgtgtggtgacatcagtgaggacccagggtccttctctctctccaccctcctggccacagcatctgcagcagccacagt<br>tggctgcctgcagcagtcaggcctctgcacttcctccttcatgtcagctggggagagggtggctttctatggctgtctcccaacagcaaggaaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr16	47593590	47593708	1000435	0	+	pAlu16-48773173; 15362; RIP_Alu_chr16_047_01	NA	NA	SINE	Alu	Ya5/8	agtgcctgccctcatggagctcccagtctaggccagtaatgttcaatagaatgttctgtggtgatagaaatacttatctgtgatgtccaatatggtagcc<br>attagccacatgtggctactgaacacttgaattgtggtagtgacaggaagtgtattttcattttaaatagtcacacatgactaatggttactctattgga<br>tggtagaggtctagaggagaaacatgaaaatgtttagcacagagcctggcatacagtcagtattcaataagtgcatctttcctttccctccctccactat<br>gtggcacctggtaccatgtttgttaactcctctgctgctgttacatgttcttaaggatgagtaaggtcatctcaaacagactct<font color="green"><u>AGAAAGATAGGCCTCA<br></u></font><font color="red">CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGATAGGCCTCA</u></font>gtgtggattatttatatgtgtcttccaggattttgcacacagtaagtgctctttaaatgcctatt<br>aaagagacaatatggtgtaagaaagggaacatgctttggcactaagaagaaataaatttatatcttggctccatcactcagccgctgcacaacctgaaca<br>agttactcaagctgtctgggtctcagctttctctctgttcaatggggtgatgatgggctactctgtgggggtagttgtgaaaacagatgaactcatgcat<br>gaaaagaacccagcatggatccttacacaaagctgctctccaaacaggagaaagccaaccagaagacaaatgatgatgcttctttggatgttcccagctt<br>cacagatgtgggccctgta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr16	60604378	60604695	1000436	0	+	Yb8NBC499; 238240; RIP_Alu_chr16_060_01	GGGGAAATCTCCACATCAAA	ACCCCCACAAATGCATACAC	SINE	Alu	Yb9	gttaagataattgaaaaatatattattttttctcattttattaagttttacattttaataaaagcatattaagaaaataaaatgcagaaaattatttttt<br>aaaactcataatccaaccacatatattggcggaaaaaagattgaatatattgatatatttccttacaggttctcctgtattgctttgcggtatagttact<br>aatctgaatcaatgtcagaaattaactcctcaattttttttaaggtgggttacctggatatcacatactcattagatataatcatgcatttgggattttt<br>ttatgattctgtgttgttttcaactggggaaatctccacatcaaaacagtgaatagtggttatagacgtgatttgcattctcttt<font color="green"><u>AAATTAACTACTTAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAATTAACTACTTAA</u></font>atcaagagcattggcaatgtgtatgcatttgtgggggtgaaggtaattgaaaaaatagcggtagaat<br>gactgaaagtattgaatatgggtgtatgggtgagcaggataatgggcactaatggctcattatttttgtaaatttgaatacatacatctatattcatggt<br>ttgaagatagatacaaaaatgtttaaatgtattttttcatgttcacacacatattttaacagatatatgccaggcactctgactgtatcacacatatatt<br>ttaataattattttctatacacattttatatcttgcctttgatatttattaagttgcaaccacactcttatgttataaatcttaattttttaatgacttt<br>atgctattctgtcacgtg	UCSC	<UL><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	446	113	NA	intron:CDH8:NM:001796:2/12
0	chr16	64039690	64039691	1000437	0	+	9449; RIP_Alu_chr16_064_01	NA	NA	SINE	Alu	Yc1	ggataacccaagtcctcaaggctctctcttctctaggaaattaggaaggacatacacatgcatgtagtaaaggcagagcatcccagcatagagtccagag<br>gagctccgaggagaatggaagcttgtaggggcataggggagctgcttcatattttcaagactctcactgcaatagggaacttaggtaaccaggcttgttc<br>tcccacaccaaagagaagactggaaactcatggaagtggtgacattcccctaaggcacacattccaggctgagcatttaaatcagttgatacttcttctg<br>tatcttatttaagactttagtacatgagctcttaggagaccaaaagttattttcagtatcagaaactggtgagtttctaacaa<font color="green"><u>AAAAAAATTGTTTTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAAATTGTTTTCTG</u></font>aaaatagggcttacttctggaaggcaggataatgcacagaacacaccacccctttctccaagatgcccaccatcttaattcaaaa<br>aactgaatttgtcaccttgcatggaaaaaggaactttgcatatgcaattaagggccttgacatgaataaattatcctgttggacccaatctggttacatg<br>ggttcttaaaagtggaagatgtttcctggttgtggtcagaaggaaatgtgaccatggaagaagggtcagagggatgcaatgttgctgactttgaagatcg<br>gaaaaaaaatgaactgtgagccaaaaaatgttagcagcccctagaaacaggaaaaaacaaggacatagattctccccaaatgcctccagaaggaatgc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LOC283867:NR:027755:2/9	
0	chr16	65380707	65381028	1000438	0	+	Yc1NBC35; 5511; RIP_Alu_chr16_065_01	CCCATTCTCCATGCCGTGAT	TGCAAGGCATTGGGGATACA	SINE	Alu	Yc1	caaacatcatgttctcacttatttgtgggatctagaaatcaaaacaattgaactcatggagatagatgattaccagaggctgggaagggtagtggaaagt<br>ggtgggtatggtaccaaaaaaaaaaaaaaaaaaaaagaaagaatgactaagacttactatttgatagcataacaaaataaccataatcaataataattta<br>attgtacactttaaaataactaaagagtataattggattgtttgtgtaacataatgaataaatccttcagtggatggaaaccccattctccatgccgtga<br>ttatgcactgcatgtctgtatcaaaacatctcatgtaccctataaatatatacacctattatatagccacaaaaattaaaaataaatt<font color="green"><u>AAAAAAAAATTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAATTC</u></font>agggactatatcttacttatccctgtatccccaatgccttgcacaaagattggttcctaaaaggtg<br>attttttttttttttttttgagacagggtcttactctgtggtctgtcacccaggttagagtgcagtggcataatctcggcccactgccacctccacctcc<br>caggctcaagcaatctcccacctcggcctcccaagtagctgggaccacaggtgcacactaccatgcctggctgattatttgtatttttggtagagatggg<br>gtatcaccatgttgtccaggctggtctcaaactcctgaggtcaagtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccac<br>gcctggctgatgaagaaatatt	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11560904">PMID:11560904</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	481	162	NA	intron:CCDC79:NM:001136505:5/19
0	chr16	65811178	65811482	1000439	0	-	18088; RIP_Alu_chr16_065_02	NA	NA	SINE	Alu	Sp	caggagagcatttaaaggattgaatgaggccgggcgtggtggctcacgcctatagtcccagctactcaggagtctgagacaggagaatcacttgaaccag<br>agaggtggaggttgcagtgattcgagatctagccgctgtactccagcctgggcgacaaagcgagactcagtctcaaaaaaaaatacataaataaaggatt<br>gaatggatgattaacaatgtcagatcccacaaaaagcccagcaaaatgaagaacaaatattgtccatgagatatgttatccaaggaggccaccaatggct<br>tcagtgatatttggcatctggaaaaataagccaggtggattgaggagtgaatgagagaagtaggaagtgtagagcgtgacctcgctggc<font color="green"><u>AAGAAATTTCT<br></u></font><font color="red">TGGCCGGGCGTAGTGGCTCACACCTGTAATCCCAGCGCTTTGGGAGGCCGAGGTGGGCGGATCATCTAAGGTTGGGAGTTTGAGACCAGCCTGACCAGCA<br>TGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCAGGAGAATCGC<br>TAGAACCCAGGAGGCGGAGGTTGCAGTGAGCCCAGATCGTGCCATTGCACTCCAGCCTGGGCTGGAGCAAAACTCCATCTCAAAAAAAAAAAAAAACAAA<br>AAAAA</font><font color="green"><u>AAGAAATTTCT</u></font>ctacagaaagaaggaaataaatagggcaagtcaggcacagtggctcatgcctgtaatcctagaactttgggaggccgagacgag<br>tggatcacctgaggtcaggagtttgagaccagcctggccaacacggcgaaaccccctctactaaaatacaaaaattagccaggcatggtggtgggttcct<br>ataatcccagctactctggaggctgaggcaggagaatcacttgaacccaggggtggaggttgcagtgaaccgagattgctctacttcactccagcctggg<br>caacagagagagactccgtctcaaaaaaaaaaaaaaaagagagagagagagagaaagaaatagggcagaaatgagaagttgagatgggtttgacaaagac<br>aaagg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:LRRC29:NM:012163:2/7	
0	chr16	69721879	69722191	1000440	0	-	13768; RIP_Alu_chr16_069_01	NA	NA	SINE	Alu	Yb8	gcaccctgaacacatatgttatttaaaaagagttatttgacaatactgacaggagttggaactgggacaggaattcagtgatcctaggctcccactcagc<br>acttatgttgctaaataatttgtctctcacccctggtaataccagtacaatgatgggaatatggtcgtatgtcctgggaggagataaaattcagtctgca<br>aagttcaggagaaatgtgaacatagctctggtgggggcaatgagtggattggggaaagctgctgttctctcttatcacgatggatattaaaagctagaaa<br>aagagagaaaaggaggtgccttaaggcatagcttgagcattttgtaagctgacagcttggcgattgcctatggttgacagggggag<font color="green"><u>AAAACCGGTATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAACCGGTATATA</u></font>tggagttgccagctttgtcccaggaactgcactagagccttgattacatttaaccctcaacacatctttctga<br>tggagcagctcctgtggtctctagaaggagaaggcactgaggcttagaggaatcagggaactgccaaagtcacagagctagtaaacagatcacagaatta<br>gtatgcaaacctagtccctgccggccccaggttctatgctccaggtaactaacagctaagaaagaattaaagctaagcaaatttaaaaggaacaaaattg<br>tccttgccatgtgaggggcagaatagatgttaaatatttaaaaagcagcctggaaaacaggattacctgaaagaaaatatttgtccagatatacataagg<br>gctcaggagtaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:HYDIN:NM:032821:8/86	
0	chr16	85371728	85371729	1000441	0	+	12621; RIP_Alu_chr16_085_01	NA	NA	SINE	Alu	Yg6	cgttactatcccatttcacagatgagaaaactaaggcccagggaggtaaataacttgctcagggtcttcaagtaggaagcagcagagccgagattccagc<br>cccaagctggcactcttcagcactgcacagtccgccctctctgcactctggccagcgtcagcatcacctccagggacagtgcatgcaccaggaaggacac<br>agctttggaaccatctgcgtgaaaatgcgaatgtttaggtttgcattgcaaaccccactgcaaatcagctgtgactttggacaaagcccatcatttctct<br>aaagccccaacttctacggattgcatccgccttcccttcttcccgacccccacccccagtaattcctgctccaccttcaaaccccc<font color="green"><u>GAAAGGGAGTTTGA<br></u></font><font color="red">GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG<br>GTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG<br>CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCNNAAAAAAAAAAAAAAAAAAAAAAAG</font><font color="green"><u>GAAAGGGAGTTTGA</u></font>aaaggctgggctcacgtctgtaat<br>cccagcactttcagaggccaaggagggtggatcacttgaggtcaggagttcaagaccagcctagccaatatggggacaccccatctctactaaaaataca<br>aaaattagctgtatatggtgacgtgtgcctgtaattccagttactctggaggctgaggcaagagaatttcttgaacccgggaagcggaggttgcagtgag<br>ctgagattgctccattgcactccagcctaggcatcacagtgagactccgtctctaaacaaataaataaatacaaacaactccctttcaagattagctctc<br>tgcatttctggtcatcagttattcctactctaataggtgttctggttatctcttggtgtata	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	13645286	13645574	1000442	0	-	79694; RIP_Alu_chr17_013_02	CTGCTCTCAACCATTTTTATCCTCTAC	CATGAACTTGAGTGTTGATTCAGGC	SINE	Alu	Y	agagctgacttgaacccaaattttctggtgtacattatgaactgaattctgattcagttcaacatgcattgaccccactgtatactaagctctagaaata<br>aaatatgagtaagtttcagatctttaaatgcagcctatgagaaaaaacaggtactttctataataaattgaaccatatgaccaattgctgtttttgtggg<br>ccaaaaatgtcgaatattggttatttcatttgatttaatcaaataatatgtaagtactatgatagcggtatattgataagttactttgttgttttcctta<br>tatctggaatttctgctgctctcaaccatttttatcctctactttctgaagcagttggccttgacagaggtggctaaatgtcta<font color="green"><u>AAGAATACATATATGC<br></u></font><font color="red">AAGAATACATATATGCTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA<br>AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTG<br>CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATACATA<br>TATGC</u></font>acgctggatgactgacgaccctagcaatccacacagacttctttcttgcctgaatcaacactcaagttcatgtctaatacagcatttcttcttgg<br>cctgtaaatacagggaatcaatggctaatgagcaacttcatacaggatctctgaggttgtacataataagttggactaccccagacctaaggtacatggt<br>atttcgagacgtcaaggactgcagagttctgatggcttaaagagttaggaaaaaccactgatttgccagccaagaggtcatctgtgacctcaagatctgc<br>agcaatggtgtaagactgataactggcagcaaaataaaacagcagtacatgaaaaagggtggctgtgtaccaagcattgtgtcaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr17	27460865	27461168	1000443	0	+	9918; RIP_Alu_chr17_027_01	NA	NA	SINE	Alu	Ye5	aaaatacaaaaattagctgggcatggtggtgcatgcctgtagtcccagttacttgggaagctgagatgggtggattgcttgagcccacgagattgagaat<br>gtagtgatccgtgatcatgccactgcataccagcagcatgggcaacagagttagatcctgtctcaaaaaaaaaaaaagttacactgcagaaattagaaaa<br>cacaacaataaaataaaaaacaaaacaactagccggttgttatagatatttgggtttagtaatgaatttcctgtgacagatagcatcatacgtagaatcc<br>aaacgtgctatcatctcaaactttgatgtaagtgaaggacctatggtaaactgaaagatacataacaatttgaaaaaatgttttat<font color="green"><u>AAAATGCGAGGGAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAATGCGAGGGAA</u></font>aagtagtttgaaacaaataatttggtttatatgtgatttttagatagttatgtataactatgttaataatattgtatatagt<br>atatctattcatctgtatcttcaatgtttatatactgaagttggtaaaaactttttttacaacaaaattagtcacttttatttaaaagaaacattacaaa<br>taagtgtgcaaaattaaacatcatgattaaatacacataaaaggaacatgcatactttacatcaaaatccacatacagagttagttgattacatgacagt<br>aacagtaaaggaactgaaggaactggcaaaaccgagaactcgctgctatgcagattttatatgtttgcaatctgaaatcaaaaccataaaatagggtttc<br>ttta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	43972221	43972222	1000444	0	+	12784; RIP_Alu_chr17_043_01	NA	NA	SINE	Alu	Sq	acagaccactcacaattggtcctgacccaagaggaaccctgccccaatcaggatggaataagtgagtgcggccacttggagctgccctctaatctgccac<br>caccactggggtctgctgccctatctgggaaccaccccctcttccccttactcctccatggccaactgggaaaactcaagctaaaaaggatgacccaaga<br>gatgaaagaaggaaaagaagttaattcggaacacagggatcctgaattgcaatcctttatgaatcccaaattgccaggcattcccttgaatctgaattgg<br>gtagggaaattgaagatgggagtcacttccttctgcaaattcattgcctctttgtgctgccgtggtatcatcagagacggtgagtttcataaatttggaa<br><font color="green"><u></u></font><font color="red">CGGATCACTTGAGGTCAGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACCTCATCTTTACTAAAAATATAAAAATTAGCCAGGCGTGGTGGCAGGTA<br>CCTGAGGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACCCAGAAGGTGGAGGTTG</font><font color="green"><u></u></font>agaagacagccagcaacgcttttgtgtttcctgt<br>aaaaagagtttcaactcctctccaataatcagccaaagacaacacctggactaagacctctcacccctaggatatccaaagtacctgaatctaaacaggt<br>acattgagcctttggttggctcaccactactttggcaggaaggaatcaggactgatgcaggcccaggcaggaacaaagattccctgccatttgagctact<br>ggtttgggttgggagaattggaaggcaggggccaggtaaagtgagtcaaaaattctgaagcatggaggaaggcagaaagcaaggtggcactgtgatctag<br>cagtacttctcaaacttttaagtgtacataaatcacttggggagctgctaaactgcaaattctgat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	67363750	67364061	1000445	0	+	52865; RIP_Alu_chr17_067_01	NA	NA	SINE	Alu	Yb8	tctttaaggtcccctggctgaactttaccatggcccagcactgaaagagctttaccttctggaaacttccatgaaaataagccacttccctcattagcat<br>aattttctaaatatgacaaagcatctcattgaaaacaaaataaaacaaaagacaaagagtattcatctttttcaagtacaattgccgcttctgagtggct<br>tagtagaagtgttaaaatagcttccatttaatagtttataataacaatagagactaaaatttattcacgtcccatgtttaaggaaatggtaaatattatt<br>tattcattaactcaatcacctcaaaaaccaccctaaactgaggccatgagaagttggctaacttgttcatgtttaccccactgtt<font color="green"><u>AAGAGTCAGAATGTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAGTCAGAATGTG</u></font>aacccagataacctgaatccactacctacaatttaaaatcactctgctatatgaacattgtcactccatatgt<br>gcaaacatttcaaaagggaaatattcttatcacttgtaggtggggaatttggagcatgaagatattaactaactcatgcaagttcagagagctcttaaat<br>tagtgaagctgcaagtccatgccagatctgtcagactcaatagcctgaatacagctactaaaaccctacagaggctttgcaagagccactactgcaaggc<br>cttgggtgatggttagctaaaaataagtggtagtggttatcaattctagtatcatttatgttcttctcttagtcctctttaggagaatttatgagtccta<br>taataacattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	70131814	70131815	1000446	0	+	238963; RIP_Alu_chr17_070_01	NA	NA	SINE	Alu	Yg6	atatgtaacggagcctgggtcatccactttctacttgtccaagtttcctttgtgttctcactcatctatttcctcttttgccttttaaagaatgcttcct<br>aattttaagccttacttagcagaagagaaagggtggcaagagacgtttctgagaatggaccaagcacaaacaggaaaatctgttggccttcatttaatgt<br>gaacgtaatgtttgagtcaccccctgagatttcatgactcggaatttcatgaaagtcagtcccagtttacgaaacctctccaacagagaaaactctgttc<br>cctgcctctttcactcttcttcctatctgggattacttcatcgatctaaggagcttcccttctctatggctgcctacttttgaatcata<font color="green"><u>AAAACACCCTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAA<br>CACCCTC</u></font>tgtggtgatcactccccatgtctttctcaaccgttatctccatgcggatgacttcacacctcttcctctaacccaatatcccaatatctctcc<br>tgggctccagatcctactttctaacttcctatagggaagctccacctggttatacactgttaacctagttcagtatatgggtcatggtcaacagcataga<br>ttctgaagtcacacaaactcaaatctcatctccatcatttattaatcatctgaccttgggcatgttgccaaatcactctcctcctcagtctcctcatctg<br>taaaatagagtactcatgacaattctttctcaaagggttgccacaggaaataaatgagttaatgtaagtaaagtgcttgatacagtgcctggaaca	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	promoter:CD300E:NM:181449	
0	chr17	70551895	70552194	1000447	0	-	238400; RIP_Alu_chr17_070_02	NA	NA	SINE	Alu	Yb8	acaggctgtcctgagaaagaaaggaaggacaggacaggtgtttgacaactttcttgaagatcctgagaaagactgcttccgcctcccttgcattccactc<br>caagcttatagagatttttgactttgcagtcttttaatatctgaccctgatcttacttaaagaggactattttcctatattctgactttttttttaagtg<br>gctgtagtcgttttctgtatttttctcacattttcacatgtgttgaatacctcttaaaatgcaggccgggcgcggtggctcatgcctgtaattccagcac<br>tttgcaaggctgaggtgggtggatcacctgaggtctggagtttcagcccatcctggccaacgtggagaaaccctgtctctact<font color="green"><u>AAAAATACAAAAATTAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br></font><font color="green"><u>AAAAATACAAAAATTAG</u></font>ctgggtgtggtggtgggtgcctgtaatcccagctactccggaggctgaggcaggagaatcgcttgagcctgggaggtggaggt<br>tgcagtgagccaagatgatgccactgcactccagcccgggggacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaagtgcacaacgtgtgctggt<br>gctgctagggtataatccgatgtgaataagaaggtgcaggtgtattaccaatctagttggaaggggatagcccttttaagtttgtaaaactctggagcaa<br>gttgctgtgcacaatttcatgtgacacttttagcagccctctggggcaagcaggactgataatgcccattgtacacataagtaaattttagcctagagag<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ATP5H:NM:006356:1/6	
0	chr17	72499126	72499434	1000448	0	-	2265; RIP_Alu_chr17_072_01	NA	NA	SINE	Alu	Ye5	gggcctgaacccttgcttggtcatatgtgcaaaatgtcttgtgcagcaaaggtgcaacgaatgggggcgaaaacaagaagcaatgccttgagcagaagca<br>gctctgatggccagggcgtgaactagggctccagggccacgctgtctccacatttccaatcctcataggacctgctcctggctaagggcaagaacagact<br>tgggagaaggcagggagctgccccatgatgggtcccttcctggccaccccagagccgagccggagagttagaccaaccagctgtgtatagccagccctgc<br>ctgccttctccctgcccacctccactgacgcagggctgtggttacagaatgcaaaaagcccttgtattcctctgttctcacattgctatt<font color="green"><u>AAAAAACGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAACGCC</u></font>ttgagactgggtaattcataaagaaaggaggtttaattggctcacggttctgcaggctgtacatgaagcatggcgctggcc<br>tctgctcggcttctggagaggcctcaggaaacaatcatggtggaaggcgaaggaggagtcgacgcctcacatagggaaagcaggagctgggccaggaagg<br>tgctacacacttttattattatttatttatttattttgagatagagtcttgctctgtcgcccaggctggagtgcaatggctcgatctctgctcactgcaa<br>cctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccaagcctggctaattttttatattttt<br>agtagagac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	73499894	73500192	1000449	0	+	238600; RIP_Alu_chr17_073_01	NA	NA	SINE	Alu	Yg6	cagtgaagaatatatgctctttagggatacagcgtggtatggatgcagcgtatgcttgaaactcagtccgacctcagttgaatgacgacagctctgtggc<br>tctctcacttactgtctgtgtctgtacgcagaggtcctctgagcttcatcctctgatcctctccttgaagatgcaggtgatacctgtctcaacaagatcg<br>atttgaggagcgaatgaagtcatctatttgaaagaccttccgagcccagtgctgagtaaatgacagctcttgctaccattagtttttccaaagactgtca<br>cttcacactgtctgctgccctagtatctttgcagttggaactcggtatttatggaggattgtttgattttctaagttttatctt<font color="green"><u>AAGATTAAGCAAAACC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>A<br>AGATTAAGCAAAACC</u></font>actgggaacgttcacacttggactgtgttgccttggccccccagataattgctgactttttgcaaattccttgagttttcccgtc<br>atgctttttggctgtcaagaggctgcagaagatgatttaataaagcctaccctggcacacacatgctagcgcaaaaaagaagctgtctagtgcatgacta<br>cgtcgcctgtgtgaggtacccactaaaataacttacttttagacctgaatgctagggaaactttttcttcccttgtagaacaggtgggtgttcttatggt<br>tcatgagaatccgtaaaggacagagagaggaattgaatcaaatagtaaaataacgtggcaaattttaggttacctctgagtacgtgttaatccattagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	827119	827419	1000450	0	-	19444; RIP_Alu_chr18_000_01	NA	NA	SINE	Alu	Yb8	ccattttacaaatgagaatcagaagaacagagatcaaaggactgagaatgtgagcctaggtcatctggctgtaaaacctatgttcttggtcaccagtgcc<br>atgtggcctctggtgactgtgcctgaagtgccacttagaaaatagaagctctctagttctagatccctgaggaatcgccacactgacttccacaatggtt<br>gaactagtttacagtcccaccaacagtgtaaaagtgttccagccatcccattactgggtatatacccaaaggactataaatcatgctgttataaagacac<br>atgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggatt<font color="green"><u>AAGAAAATGTGGCAC<br></u></font><font color="red">TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>A</font><font color="green"><u>AAGAAAATGTGGCAC</u></font>atatacaccgtggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacgtggatgaaattggaaaccatc<br>attctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaataatgagatcacatggacacaggaagggga<br>atatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgca<br>ccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtacaataaaaaaaaaaaagaaaatagaagctc<br>t	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	9375405	9375715	1000451	0	+	pAlu18-9375306; 7480; RIP_Alu_chr18_009_01	NA	NA	SINE	Alu	Yb8	gggggttatggtgagagtatgagtgacctttccggctaaaccccaaagaggctccagttgcagctttatggagtgtgggtgtgagaaatgaatttgaaaa<br>tagcgagattatttgaagatctgtctgtagaacagctgtatgatttgataaccaattccctcctccattcgtcagaaaaagttccaagtaattaagaagt<br>ttctctaggaaaaagaaattggagaatttctttctagagaaattgaagggaactagctgaaaagaagtagggccactgatgtgttattggtacccaggca<br>aggcctcctcattcaggcattgtagggagggaaggtgtctccagcctaatgactagatgcgaaagaaaaatagaataagtgtagctt<font color="green"><u>AAAAGAAAGAACG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAAAGAAAGAACG</u></font>aagtaaaaagcagaccaaggaggaaatatttaggacataaaagaaatcttttaaaaactgattgttatcttttaga<br>aaaagttaacaaagtatcatgtctgtattatgaaaaacaatcagaataagaaagcttttgcaaatttaaaattcaaatggggccgggcatggtggctcac<br>acctgtaatcccagcactttgggaggccaaggcggatggatcacctgaggtcaggagttcgagaccagcctggccaatatggcgaaaccccaactctact<br>aaaaatacaaaaattagctaggcgtggtggcgcatgcctgtagtcccagatactcaggagactaagacaggagaatcgcttgatcccgggaggcggaggt<br>tgcagtgagcc	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TWSG1:NM:020648:3/5	
0	chr18	12841197	12841511	1000452	0	+	pAlu18-12841099; 3347; Yb7AD188; RIP_Alu_chr18_012_01	TTTTGGGGAGAAATTGACAAA	TGTGCATTTTCTAATTGCTGGA	SINE	Alu	Yb8	ggcacaatcttggctcaccgcaacctctgcctcccggattcaagcaattctcctgcctcagcctcctgagtagctgagattacaggcatgcaccactatg<br>cctggctaatctttgtatttttagtagagacgaggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatccacccacctaggcctc<br>ccaaagtgctgggattacaggcgtgagccacagcgcccagccaggcattcttaaattttaagatttacttgacagcctagtcaatggtccattttttaca<br>aatagaccatgtcagtcctagaaaaatgtgcattttctaattgctggatatagggttctatgtatttttcttcttatattaaggtt<font color="green"><u>AATAATATTATATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAGAAAAAAG</font><font color="green"><u>AATAATATTATATA</u></font>aatctatttctttacaaatatcttgtcttattaagaagcccatgaacatggatttgtcaatttctccccaa<br>aattctattcatttttgcttaatacatcttggggctactttattagctgcatacaaatctcagagctgatactgacatctgcattcaaagtagttatgcc<br>atttgctaagatcatgcagggagcgtgccgaaagcatagaagttttcccttccttcttccccctctagtaactcatttaaaaagtatgtttatttgagaa<br>tctttttgttttgtagagcaacaaaccatggactatgtaacctgacactaccagaatcatgagtctctgtgttaatttcctttaaaatctgactgtttca<br>catggatgaaccttg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:PTPN2:NM:080423:2/9
0	chr18	24125818	24125819	1000453	0	+	2606; RIP_Alu_chr18_024_01	NA	NA	SINE	Alu	Ya5	gcaaagtcagcaacaatcaggagaaatgctctttctttaactgtaaggagtacataagcttgaaattactgggacctgtcaaatggagaaagtccgtctg<br>taaagtaaaacaatacaatcaaagaagagctaggagacaaaggaatagctgatcactgataaaatagttaaatcctcaatttagccatagttgttctatc<br>atttaatttgtaaatcaataaatgcatgttattttgtttaaaatagtgggaattcttttgttatgtaaaaattagagaactaaaatagaaaagaaacaca<br>aatttaaaaagaaaaataataaggacacttgcaagagaaataaaaaataaagtcatttctctttgtgtgtaggttgataaaaataacag<font color="green"><u>AATCACATTTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAT<br>CACATTTT</u></font>taatcttcaaattttctgttcagctaaatatagttaagaatacaataattataactgcagccaacatacaaatctgttttttgagaaagaag<br>acaagacttatattaagtaattgaagagtgttctggaaatatcctcaatgttctcaaatttttaacagcaagggcctaagacatgaggaagaccatgtgc<br>aagattgggactgcaactcctggcagataagtctttccctgctaatattcttatgctatagtagaagtcctggaagacacaactcatttctcattttctc<br>tttatgtaacttttgactttttttagtctttaacatcagcattaattatgttctagtataaattattgactccaaactggggcaaggaggattaaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	29787208	29787209	1000454	0	+	3640; RIP_Alu_chr18_029_01	NA	NA	SINE	Alu	Y	accgggaggtggaggttgcggtgagctgaggtcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaacaaaatgttctaac<br>atgacagagtttcacattatcaaagccaaaattgaggaagactactctaggagcaaaggcagatttatcataaagtcaataaaagtgaggcataggatgc<br>ctcaattggatgagcctcttaagtgctggagttcctggatgttgtaagcattctaggtaggaagggaaagccactttaaaatctggaagcatttatatgt<br>aagtgtgtctgaaaattgtctaacgagatgttagaagaaaagcgttttaatcttcaagatttcagtggtttctaaatttcttt<font color="green"><u>AAAAATATCCTACACAA<br></u></font><font color="red">ACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA<br>GCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGAT<br>CGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATCCTACACAA</u></font>cattttttctacctaa<br>ttttttgctcataattgtgtattacttttcttttcaaaaagatctcaagtcatataatcttcaggttttacaaaccctatttctgcctctgcctaggcat<br>aatgtgtgtgaagagggtaagaggaaagtagggagttgagttaggattatgcaagagtacaggtatgaggtatgaaagactagaactaaaataagaacac<br>ataaaattggaaactgtaagatttatttgggaaacagaataaaggaggaataagcagaattcattaagtggtaggatacaagacacaaaaatagtcaaat<br>ctcattctacatttttgagcaatggtaaaaatgacaatatggtgctattaacagcaggcaagtcaag	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:NOL4:NM:003787:8/11	
0	chr18	39707441	39707753	1000455	0	+	3902; pAlu18-41341334; RIP_Alu_chr18_039_01	NA	NA	SINE	Alu	Ya5	gcacaccagcatggcacatgtatacatatgtaactaacctgcacattatgcacatgtaccctaaaacttaaagtataataataataaaataaaataaaat<br>aaaagttagcattaaaaaaagcaaaaacaaaaacaacaaaaaaagaaaagttagcataaaaaaaaaacaaaaacaaacaaaaaaaagaatacctacattg<br>ataatatgcaagcggttattgaaacacaattgtattgatgacggtcttataaaagatcagaagaatatataaaactataattactaaaactaattggtct<br>ggcacatataaattaaaaaaatttttagtttagaaagcatagtaataattttgtatattataaacttacattagctaattaaatt<font color="green"><u>AAAAAATGATGGATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGATGGATC</u></font>ggccgggcacagtagctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcag<br>gagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctac<br>tcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcacgccactgcactccaaaaaaaaaaaaaaaagatgg<br>atcattaaaaaataaatattggtaaatattgggtcaattgttatcatttaaagttaaaaaatatctttaaagccaaatcaaaaaaacctagaaaacatta<br>tattatctcaatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	42592432	42592753	1000456	0	-	31575; Yb8AC1796; RIP_Alu_chr18_042_01	GCACGTTTTTATGTGCCAGA	CCCCTGTGCTATCCATGAAG	SINE	Alu	Yb8	tacctcataatttggcccagtgcaaagagaaatgcaaacccccttgttcaaaagtttgaagacagcaagagtggagcaatcagtcaaaatcaatggtggt<br>ggtggggacaaatgaacaagtcccactcccaagaagccagcctgcctgtgtgtgtgggagaaagaacctcatctcagaatcccaagacttgttgctaggt<br>gagttactttgggcatctgttgctttagtcctttcagctgtaaaatgggttagccaggggctaggaggtgaaaattcattaatatatgcaagtgaagcac<br>gtttttatgtgccagacagcaaacaaatacaggaattattataataatgggccctctaaatgttggagtttttctttaattggtt<font color="green"><u>AAAAAGCCTACCTGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCCTACCTGT</u></font>gaccttgcagagaaatacagaaactcttcatggatagcacaggggccacttctgccttatgaa<br>ttaacacaaatcccgaattcttggtggaacccttatcatgagattttactgtgcattatttgatctttccagttcaaagaagaaactactaaatgccaag<br>gtcgagagtattggagtctgggcacttcccccatcaaagttcttgtgctgaggtttgagtttcggtcaggttcgctgttgaatccctggcctgactctag<br>aacatcccggagtgcctgctggaacctgggaaggggcaccctagaatcttccaaccggcctcagtggcgagcgccgcgggcacacgactcccagcgcttg<br>gagcctctgcggtgttaggatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	485	152	NA	intergenic
0	chr18	43353907	43354204	1000457	0	+	14275; RIP_Alu_chr18_043_01	NA	NA	SINE	Alu	Yg6	tcccttaccagaggcaattgccatctgaatttgccctgcccttattaaattataatttttattttgagaaattataaaaattcagaaagtaccaagaatt<br>cctaacaaacacctgtgtacagttgtatagcattgatcattgttaacaagttgtcctgtttgtttctcattaaataaagtaatgagggcattacagataa<br>agctagagctgtcttttaattgctggccagctcactccactcccaggtgctcagctgtatttctgcagcaaggtattagtgtatcctcaaatgacaacta<br>taaggtcagccacttagctgacaccaggccccagagggtatagcagagattctcatgagcacatacctccaagaaaaagcagatat<font color="green"><u>AAAAAGTAGCTGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>AAAGTAGCTGCA</u></font>atctagcatggcccaattactttatggaatcattgaccttagttgtggaaaggccattagaaatcagttacaatggaggccagagagg<br>ctgagtgactgatatgaagtcaccagccaggtatgtcagagcctggactgcacctgggtctcccatcaagcactgaattcaaggtgagctcagttgccag<br>ccgtgtgaatcatctgaatcatgatacgcttcacgctagactttccaggataagtgagtggaactggggattgagcttcctaggagtggaaggtaaagca<br>gaaagccctttcaggttgttaagaaacatttttcaaatatctgggtccacttcccttgacaggaagtccctactgcttgacatcacacgtctttcttg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr18	53952591	53952901	1000458	0	-	pAlu18-55586484; 14586; RIP_Alu_chr18_053_02	NA	NA	SINE	Alu	Ya4	aaaaaagaaaatgtgaaacccttgatttgaggcactaaagggtatagtccaattatagaaactctaatgtcactctaaggaaaatctaatgtccttctag<br>aatgttccttcgctttccattgaccttaaacctgaaaggttttacttaaatccctcctactccatcaccctttccctcactacttcacactgtactaaag<br>gtcttcctttgtgaatatccactgtaatcacagtcagtagctcccaggttcctccccttcattcgcctcaggttccctgaatatcaaaaaaaaaaaaaaa<br>aatgaaaattgcttgaagacaaaagaaaaaagattaaaagaaaaaatagaaggggaaaaaagaaaagaaattctgattttcactt<font color="green"><u>AAGAAATGGAATTGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGAAATGGAATTGC</u></font>tttaactgatttgggtgacaaccgacagccaaattaagaatattaggccaggtgcggtagctcatgcctgtaat<br>gccagcactttgggagcccgaggcggatggatcacctgaggccaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaataca<br>aaaaatagctgggcattgtggcacgcgcctgtagtcccagctactcaagaggctgaggcaggagaatcacttaaacccaggagatggaggttgcggtgag<br>ccaggatcatgcctctgcactccagcctgggccagtgaacaagactccatctcaaaaaataaaaataaaaaataaaaataaagaatattaagctcacttc<br>ctttcatacct	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:NEDD4L:NM:015277:1/30	
0	chr18	55409175	55409496	1000459	0	+	Yi6AH29; 19421; pAlu18-57043068; RIP_Alu_chr18_055_01	AGTTGCATCTGGAACTTGAT	CTTCAAAGGATCTGAGGTGT	SINE	Alu	Yi6	taaaacaccaaaaaagaaaagccacaggaggaatatcccagacagatattaaaacatacaaccgcatcttaagttaaaacagggttgtatcgcacatgag<br>taagaggacagagaccaatggattagagcagaaaattcagaattagacctgactactttggaaattttgtatatgaaacatggtaactcaaatcactggg<br>gcaaaaatgggttttaataagttgtattaggacaactaaatagtccattagtaaaaagataaaattagatacagacttcactccatacataagaataacc<br>ttcaaaggatctgaggtgtaagtgtgaaaatttaaactacaaaagtgctagaaggaaacagggactcctctgtaacctgggcat<font color="green"><u>AAAAAGCTGCTAAGTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGGGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAGCTGCTAAGTA</u></font>tgatcaagttccagatgcaactgttaaaaagaataaacttggctacataaaattacttttgc<br>atagtgaaaaatgccataagcaaagtcaaagaacaaaagaaaaactgggagaaaatatttgcatcatgtatcacaaattaaaggctgatatccctaatat<br>gtattaataattacatatatcacatatacatcgtataaactcaacaactggagggactccaaaagcccaagagaaaaatggacaaaattcatgaacacac<br>agttcataagataaaaatgatcttaagtgtgttaagagatttccaagtctacccataagaagactggcaaaaatgaaagagctcgaaaacactctgttgc<br>tgaggctgtagagaaacaggca	UCSC	<UL><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	461	123	NA	intron:CCBE1:NM:133459:2/11
0	chr18	57879650	57879740	1000460	0	+	31724; RIP_Alu_chr18_057_01	NA	NA	SINE	Alu	Y	ggttctcaagagaaacactgaactcacaccagtagtttcagctgaatacactgactgtagtgtatgcttcctgagtctcaatttcagtttggtaaaatct<br>gctctgaagatgcatttgaaacacagagtactatgcctataaacagatatactatctaatgccctaataatacaatctttattatttaagaaactatact<br>tattaacctgcaactattaataacaggtgacaaatctctcaaaagtgttctgaaaatccatggcaatcaccacaacactataaacattacagatacatgc<br>cagactacattcacggggcagtcagctcccactcctctctcaaattctgggacagattcccgccatttcaggaataaatgc<font color="green"><u>AAAAAAAAAAAGCAATAAA<br></u></font><font color="red">GGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCATTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAA<br>AAGCAATAAA</u></font>aatagtgaggacaaaagggcaacattccattcccgtgaataaaaagcatggaatggctgaaatcgctaattatactattaacacaaagga<br>gtttaggaataaaattcgtcatgaaggggaaccagtgcaggagcacaattccaataaccccggcacctgtgaagggagctctgccggtcagtttataata<br>tcagcgacatgacaagaaacaccacagcttttcaaatgtaccttcacacaagaataattggaaactcaaaacttaaatgcaacattctcacaaacagaaa<br>gcagaaaaagtacaataatgaagttttgacatgtgaaccctatcgtatggtgctttagttttgaatcttgacgtacatttccccctacttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PIGN:NM:012327:29/30	
0	chr18	64723475	64723476	1000461	0	+	9510; RIP_Alu_chr18_064_01	NA	NA	SINE	Alu	Yb8	atccttttactttcatattctcttatactattcactgctatgttttgctaaaatcatgaattttaaatctcagtccctactaaatatagtgtttggcaca<br>tcctcataactgtgtgttaaatgcataagtttaagtattgatgcttctgttattactatttgaatttaattatgtttcctgatttgttttcaactcttat<br>acttttattctatcagtaaggcaaatataaggttattggaagtttatattattctttaaaatctccttcatgtgtatcaaacaggtgatatgttaaccca<br>tatccaattaaaacaaagatgcaaaatttgacaatttaaatcacttatatttaataaaataccatagcaaaaattatgacatttacgaatgt<font color="green"><u>ATAATTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA<br>TAAATAAAAATAAAAATAAAAAAAA</font><font color="green"><u>ATAATTTC</u></font>tattttttaatgtttgatgtaactagcatactactaataatccactatattattacaaaataatgag<br>ataaataattatttaccttcctatttaaaaggacataaaacactattgttacaaagattatttaaaattaaaactaaaatgcaagtttgagttaaaatca<br>taagattagtgtaaactcagattaatagatctgagccattcactattcttttttcttctctttttcattaaagtgaaatttcataacataaaattaacca<br>ttttaaagtgaacatttagtggtatttagtagattcacaatgttatgggaccgccctgtctagccctgtctatttaattccaaagcactttcatcaccct<br>ataaggaaacaaagcaagcgtgatg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CCDC102B:NM:024781:6/8	
0	chr18	66997721	66998038	1000462	0	+	22399; pAlu18-68631614; RIP_Alu_chr18_066_01	NA	NA	SINE	Alu	Ya5	ccctatcactctaccctacagagatttgtaaagagctaagaaagtaccaattatattatttgagtacttgctggagaggcaagtttctctggacttccca<br>gatatgtaagccagtaaatttaaactttttgcttatgtttatttgaattagatgtctattacttgaaagactgatacagaaattggtaccaggatatagt<br>atattgcaagtaataagcagaaaaatattgacttccctgaggtaaagtaaagcttcttcattcccagcaaggatgctgtcaatccttgctatgggcacta<br>aaggagtgaattaagctattccctactgtattttagaactcagattatgagtggactggaggatagagctttagctccagaagt<font color="green"><u>AGAAAAATAGCAAGGT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAAATAGCAAGGT</u></font>gttgtagtgtgttaactaaatcctgagtcattccttacactgcaaggaagcaaaacagcttccatt<br>caagcttgactctttgagagagctaagtgcacagcacacgattttcttaaaagagggtacatcttcctatgaccagcaattcatgagctttgagattcag<br>actacgatgcatattgtgagatcacaataattgaattctctgtcccacattgaagctaaatttagtaatttaaaggaagtgcaaagcaaaagatgagaca<br>ttgttaagaaagaatcccaagaaataaacatgcagcctcagacttttcccaaacccctcctattttgtattctctacctgatatggtaatgaactatcac<br>attttaaagcatcatgca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	70303423	70303748	1000463	0	-	13456; pAlu18-71937323; RIP_Alu_chr18_070_01	NA	NA	SINE	Alu	Yb8	ttcaagtaggcagttaagaagatgcaaacaagcatacagaattaagcccttaaagtcttgtaaatcactactttgaaggaactccaattattcccatgac<br>taccctccacccaaaacagcagcagcagcagcaaaacctagtctaaacattttctatgagtacttcttgctctctggttcagaacaattatataatacct<br>taactctaagtatgttaaagaaagttaatttaatgaattcaaaaaattggctgcaatctcctccaattcagtgaaatctttctgcactatgccacagatt<br>ttcacattcaaaaagctcaaaagagcttcaaaacataaggcatcgctttttccactagtacttacaggctttttacaaaggtcaat<font color="green"><u>AAAAACATCATGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACATCATGGA</u></font>atgagagtaaatctcaatgtggctgtggttagtggttagatctgtcgttctggttttttg<br>tcctgtgctgtcatgtctgcgccttccggacagtatgttctctgttttactgccgttatttttagccatacatatattttttttactagagatagagttt<br>ggctgccatgtgtctgaataggagtcttgtgatcagcttaacactgcgtttttcttttttaacgtttgtcttttagagatgcattactgttgatgtgtta<br>gtgtggcacatagattttcaaaatatgacattttgaaagactgttctgaaatatcactgtacgtcatgccagcacaaagcaccagccaacaccgaacttt<br>gacctcaaatactgaactagccacat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr18	71699010	71699319	1000464	0	+	pAlu18-73332903; Yb8AC1776; 238778; RIP_Alu_chr18_071_01	GCACCACTCTGTGTAGGCAA	GGCATACATTTTGCCCTTCT	SINE	Alu	Yb8	tggcacaagtcagcttctgggtaaggcatgcacattttatggcaccttatatagaccagtgaaataaatacacgagatgcaaagctcaaagtgatatatt<br>ccagatctgacatcttaccatggctttgagcttcaggcactgacaaatattccacacgtaccaactctcccagaggaggaaatataatgatgtttatgtt<br>atgcaatatgtaaaatatttatacgttgacttcaacacaaactgactatcatttaaatcaggaggtgccgctcacaataaaggcaagtgacattatctgc<br>accactctgtgtaggcaaaggggaactcagtacagcaaatgatccatttatgtacagaataagattccaccaatgtcagtgtttt<font color="green"><u>AAAGAATAACAGTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAGAATAACAGTTA</u></font>tgggaaaggtttttaatgtgcttgcttcttctagaattgttaaattaccaagaagggcaaaatgtatgccttcct<br>gactattgcccttatctttagaatgggaaagtcttttcttctgacaaaccattttttcatgaataacctcttcaatagcatttagttatcattattaata<br>aattgttacagtaataaattatattttaaacattttattaaatgcagttctcatgtacttaaaataaattgcaaagccggcttttttcatggtatttaat<br>atatatagtatgacacaatgtgcttttaatatatttaatgttatatactttaaaatctaagtgtgttgtacttttatggaacttactttatattcctttc<br>tatatggaaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	497	172	NA	intergenic
0	chr19	41738036	41738337	1000465	0	-	pAlu19-41722139; 31012; RIP_Alu_chr19_041_01	NA	NA	SINE	Alu	Yb9	tagtaagggctggagtctaacagcacagtgtccctcctgtgtgcctctattccccaaagaatgttcaacactcctatgtgttcagtcctttgtcaagagc<br>agatataaagcaaaagttgaatccctagacttttccttgtcatattcttggatagggaaaaagcagatggatctgtttgataattgggcatactctgacc<br>ttctccacagacttgagtttccaggtagattgatttgatgttgaatggcctcaagtcatacaaaatgatgatgattgtagacgcagcattggagaagacc<br>ttctctaacctaaacgttggaatataattaaggctattatatttttaacaagaaaactactctgtagccactaaaaaacacttact<font color="green"><u>AAAAACTTTATCGC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA<br>AA</font><font color="green"><u>AAAAACTTTATCGC</u></font>tggaagtaataattgttattatataatgtgaaataatatgtcacatagtaatgaacttggagctacaagaaatctttaatttta<br>ttcataccccattttcaaagttagatatttttctcctgtacaggggaatgacggtatagaaacttacctttattgatgattcatgaggcaggcacatagc<br>atgaaatgtgcttgtatatagtacttcttttaatttgtaaactggttattaatttccagacatggttggctaaataagagatcccataagtatgcagaaa<br>gatttcagtggatcaaagggagtcttgaaagatgatagtctggtttggaagcactaatttccttacttcccatgtcacagtcttcttttggcctccttgt<br>tt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:ZNF529:NM:020951:3/5	
0	chr19	56468220	56468513	1000466	0	+	238246; RIP_Alu_chr19_056_03	NA	NA	SINE	Alu	Ya5	aaggggaaagttaatatctgccatgtgttgtcagatctaatttattaaaaagtagctgggagttcagacttttatgtgaggatcctgatttttaaacatt<br>gcaactaatgaaagaaagtctgtatgcagttttcttaatgcaggctaaataaaaccccctgcattttaactacctcacaaagccactaatttgcaaactc<br>tagactatcttaaatgaggaagcagttccctagtgagggaagggcctggcccagaaaaacctagaaaatgggaggcaaagaccaagcctttggactgctg<br>gccgtccactcacagaagaatctagaacccttcctttgaactggcttcacatccaagttgtatgggtttcctgttgctttcat<font color="green"><u>AAGAATTACCACAACTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA</font><font color="green"><u>AAGAAT<br>TACCACAACTT</u></font>tagcagcttttttgttgtttgttttgagaccaagtctcactgtgtcacccagactggagtgcagtggtgcaatctcggctcgctgcaac<br>ctctgtctcctgggttcaagctattctcattcctcagcctcccaagtaccaccacacctggataattttctaaaaatatttttagtagagacagggtttt<br>gccatgttgcccaggctggcctggaactcctggcctcatgtgatccacctgccttggccttccaaagtgctgggattataggcatgagccactgggccca<br>gcccaattttagcagcttttaaagtaacactcatgtatgatctcacagaaggtcaaaagttctggtgtggcgtggttcccctggttttctgctc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	24801400	24801668	1000467	0	+	Yd6JX352; 16745; RIP_Alu_chr1_024_01	ATCCAAGGGAAAGCAACACA	CACACCTAGCAGCTCCCTTTAT	SINE	Alu	Yd8	tcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccatgctgggtga<br>cggagcgaaactccgtctcaaaaaaaaaaaaaatcatatatatatgtattagaagtgcactgattaataaggaaagctgtttccaatatattgtcaaagt<br>ttacaaaactatatatacatggtaatctcaatcatacacataggttacccatacacatatccaagggaaagcaacacagcaaggtcttaacaactggtgt<br>gtctacatgatggcattgttagtttttgctgggagggggatgttcctaatttttgaggaatggtaaacacgcattgtttttat<font color="green"><u>AAGAATATGAATATTAT<br></u></font><font color="red">CCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT<br>TAGCCGGGCGCAGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAG<br>ATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATATGAATATTAT</u></font>ttataaagggagct<br>gctaggtgtggtggctctgcctgtaaccccagctagtcaggaggctgaggcaggaggatcacttgagccccagagtttgagaccagcttgggcaacatag<br>caagaccctgtctctggaaaaaaaaaaaagtttttaaaataaaggtagctaggccgggcgtggtggctcacacctgtaatctcagcactttgggaggctg<br>aggcgggcagatcacggggtcaggagtttgaacattgtgaaaccccatctctactgaaaatacaaaaaatcagctgggcatggtggcgggtgcctgtaat<br>cccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctga	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	452	166	NA	intron:C1orf130:NM:001010980:3/4
0	chr1	27676716	27677028	1000468	0	+	19972; RIP_Alu_chr1_027_01	NA	NA	SINE	Alu	Ya5	cttctatatgagtacagattttttttaaatgtctttttaaggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgatgctggcaga<br>tcacgtgaggccaggagtccaacaccagcctggccaacatggcgaaatcccatctctactaaaaatacaaaaattagctgggcgtgttgacacatgccta<br>caatcccagctactcgataggctgaggcagaagaatcacttgaaccaggcaggtggaagttgcagtgagcagagatcatgccactgcactccagcctggg<br>tgacagagcaagacttcgtctcaaaaaataaaaaataatctgttgcaatgagcaagtattacttttgtaacttcaaagagattt<font color="green"><u>TAAAAATAAATAAATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA<br>ATAAAAAAAAAAA</font><font color="green"><u>TAAAAATAAATAAATC</u></font>taggatattagaaatgggaggcaggccgggtgtagtggctcatgcctgtaatcctagcactttgggaggct<br>gaagcaggtggatcacttgaaaccaggagttcaagaccaacctgaccaacatggtgaaacccccgtctctactaaaaagagacttgggaggctgaggcag<br>aagaactgcttgaacccgggaggcagaggttgcagcgagccgagatcctgccactgcactctaacctgggggacagagggaagactctacctccaaaaaa<br>aataaaaaaggaaagaaagaaaagaagtagaaaataaatttcatgcaaatagcaaagcaaaaaaaaaaaaaaaaaggatatgatgtaagaataagcaaat<br>tagtagctgtggt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:WASF2:NM:006990:1/9	
0	chr1	28120395	28120695	1000469	0	+	pAlu1-27480751; 238884; RIP_Alu_chr1_027_02	NA	NA	SINE	Alu	Yb8	tgtaatcccagcattttgggaagctgaggctggcggatcacttggggtcaggggcttgaaaccagcctggccaacatggtgaaaccctgtctctactaaa<br>aatacaaaaagattagccgggcgtggtggtgggcgcctgtaatcccagctactttggaggctgaggcaggagaattgcttgaacccaggaggcagaggtt<br>gcagtgagctgagatttcgccaccgtactccagcctgggtgacagagagagactccatctcaaaaacacaaacaaacaaacaaacaaacaaaacccatat<br>aagtggacctgtgcagttcaaacctgtgttgttcaagggtcaacttattgttcaatgctaaatttattaaactctaatagctaataaaactt<font color="green"><u>GAAATCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>A</font><font color="green"><u>GAAATCAA</u></font>acctttgggtatttaaacattgtttacacatttaattaaatatgcttaaaattttaaagtgcaattaaagttttaggatggctgattctta<br>taaatacttcagatatcttaaagagcagacaaaacatacagaaacaatggtttactgggaagctggtgaggtttaagcttcagggcccctcacttgcaca<br>gcctcttccaagggtctacattcatacttacttttgtatcttactttgcattctttttcttaaagaaagccacccaaattatgtaagcttctggccacac<br>aaaatctagatcctcatgtcccatacttctttggatccttgctttatttattttgttatcctcctaaggcttctgtaccattatttatttatttattttg<br>a	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	36247283	36247284	1000470	0	+	52475; RIP_Alu_chr1_036_01	CTGTGGAGAGAACAGTAGCGCAG	CAGTGGTTACATTAGAGTGGTAGG	SINE	Alu	Ya5	aaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacgtaagaaaagtttgtca<br>gagcagcgatggtgtgaggcagcttgctctagttagtggggttgggagtttttctggctcataatgggcaagaattgttcatgtgtacttttttttcctc<br>agctttcctttacagttagaaaacggccaaactgtggagagaacagtagcgcagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttc<br>cctgtctgcaagtcgggcaggaacagaaacacacctacctgccactagaagtaatgccttcacactgctaattaataccctgttg<font color="green"><u>AAAAGAATCATGAAC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAAGAATCATGAAC</u></font>gataacttacctcatacagaacatttattttggaatatgaactgtttttaagttttaatttattctaaattttctgtaatgaa<br>ataacacgaaacaagttcatccataatcctaccactctaatgtaaccactgttaacattttggtatactatacttctttcagtcttcatctggtgtacat<br>tttacttaattatacttaattactgtagagctgtcttgtttactacttttttacttaacatattgaaaataagtggtttaatgaagttgattttaaattt<br>ttatttacatgtaattggcactaagtaagagctaaaaaaaaaagatatatacatgtagtacaaaacttttttccatttgtaggtctgtaatattgtggca<br>gg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:EIF2C3:NM:177422:6/17
0	chr1	43630058	43630378	1000471	0	+	1438; RIP_Alu_chr1_043_01	CAGATAGTCTAGGACAACACCGTC	CTACTATATGGGGCTACTGAGCAC	SINE	Alu	Y	tgttcttaaccatattgttcatggtataagtaataaagtagccacagaatggtaaatctccagttcactgggatttggtgtggtaagacccaacattgaa<br>tatggtggtaggaaactatgccttatttaaaatagtcatgttcacagaggtggtagaatagctcatgcatcagaaatatcaatcaagatcaatcagaaat<br>attaacacaagaaaaactatgaaacagtttagaggatgtttcattatagattaaagtgaaaggaggtggagggatgttgtggggaaatgcaacatacctt<br>ttaggcagatagtctaggacaacaccgtcctgtagaaatctaaagcaagccacatgtgtaatattaaattttctgatagccacat<font color="green"><u>AAAAAAATGAAACAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCTGTCTCTACTAAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG<br>CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAATGAAACAA</u></font>atgaaataaaatgtaattatatatttaacccaaaactcccaaaattttcaaaatgtaataaaat<br>acaaaacatcgtgagatatttaacattttttttggtaccaagtctttaaaatctagtgttgtattttacactgatagcacatcccatcttggtctagcaa<br>cattgtaagtgctcagtagccccatatagtagtctttaccatatagagcagtacagatctaaagtaatttcaagtcaagacacacaatcctgggagtctc<br>agccaaaagttaagcttttttttttttttttttgagacgaagtctcgctctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctc<br>cgcctcccgggttcacgccat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:C1orf84:NM:001012961:1/5
0	chr1	45568297	45568298	1000472	0	+	14332;1104685509304; RIP_Alu_chr1_045_01	NA;NA	NA;NA	SINE	Alu	Yb8	taaaaatgcaaatctgactcctctctcctccacctaaaatgagtcagcagcctagggctcacaccctgactgacccagcaggccctgctgacctttccag<br>ctaaaccaactgctcacagctccttgagcactgcagcctgcactgggctccacctttgctcacactactcttgggactggaaagaacatcgctacggttg<br>attcccctcccaaacctgaagaaaaggattcatttctaggacgaagattaccagctgcttcctccaaacagcctttcctgatccgtctcccaattagaac<br>tgatagctcccatggatgggtgtggtggctcacgcctgtaatcccagcactttgggaggccaagatgggcagatcacttgaggtca<font color="green"><u>AGGAGTTCGAGACC<br></u></font><font color="red">GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GGGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AGGAGTTCGAGACC</u></font>gtgaaaccctgtctctactaaaaatacaaaaattagttgggtgtggtagcaggcacctgtaatcccagctact<br>tgggagactgaggcaggagaatcgctttaatccagttgtgggagattgcagtgagccgagatcgggccactgcactctagcttgggtgacagtgagactg<br>tctcaaaaaaaaaaaaaaaaaaaaaaaagaactgatggctccacaattcatatcccacaaaactcagtacaggcatttcacacacctgtgacactggaga<br>gtcctcatcatttttttcctttccctctaccctgcaccccacaatggaaggtctccaggtcaagaactattcctccctccagtgaagcctggagtggaga<br>atgttcacccaga	Other;Venter	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA;NA	NA;NA	NA;NA	NA;NA	NA;NA	intron:MUTYH:NM:001048171:15/16	
0	chr1	56173882	56174191	1000473	0	+	pAlu1-55758902; 9984; RIP_Alu_chr1_056_01	NA	NA	SINE	Alu	Ya5	ccacccccatgattcaaattatctcccacccggtccctcccacaacacatgggaattatgggagtacaattcaagatgagatgtgggtggggacacagcc<br>aaaccgtatcataacactaatgcctagcacaacatatggctcattttatcaataaagactcattgaataaataaattcatgagagagaaaaaaacagcta<br>ggacaattccaggggctgaattgagcctggacattcatcactcaagatatctcaagggagtgcagccaggaaggaatcattgttgaaaaactgaaggtca<br>aagtcaataaatccagaccacatgtcttgtccaaagacagaatatcaacctaagaatgagttggcaaataaagagtttggtgagtttat<font color="green"><u>AGAAATATAGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AGAAATATAGG</u></font>acaaggtacaaggaatggctgaaggagagaggttgtcctgttcatttgggctgctgtaacaaaataccttagatttggt<br>ggcttataaacatcagaaatgtattgctcccagttctgaacactgggaactccaagatgaaggtactggcagagtcagtgtctgtggagggctcacgctc<br>tggttcatcattagcactttcactgtgtccttacagtggaaggggcagggcaactgtctggggactattttataagggcactaatcccattcatgagggt<br>gtcaccctcatgacctaatcacctcccaaagtcctgacttgataccatcgtcttggggattaggtttcaacatatgaattttgaggtaacaaacattcag<br>accatagcag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	63234540	63234541	1000474	0	+	11594; RIP_Alu_chr1_063_01	NA	NA	SINE	Alu	Yb9	ctgttggggtcttcacattccttcatctcattaatatatatgggagtgtgcttccgctgcttcgctccctgatgcagactgtcctcaggttggcaaggag<br>tgggcaggccctgcagagtcccgcctgaggcctggcgaggctcagatgcaagctcaggatccaagcaggtatcttctttgtaatttccaatgggttttct<br>ttgacttgagaagagacccttcgctgacctctcaccatgggtcaggcctgctgctaagcaccttcttatgctattttgctttatccttaaaacaaccctg<br>caatgtaggttctattggcttctctaagtcacacatgtaacaatttgctcaagcttactcagtacagctggcattctaattcagcc<font color="green"><u>AAAAGGGAGACATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAA</font><font color="green"><u>AAAAGGGAGACATG</u></font>aacaaacctctcgcaatctccaacatacttgctcttttagaaaatttgaggccaccatcttctacattaaaaacaaagca<br>aaccaggcacaggggcttatgcctgtaaaaatcccagcactttgggaggccaaagtgggtggatcacctgaggtcaggagtttgagaccagcctggacaa<br>gatggtgaaaccctgtgtctaccaaaaatacaaaaattagctgggcatggtggtgcctgtctgtagtcttagctactcaggaggttgaggcaggagaatc<br>gcttgaatccaggaggcagaggttgcagtaagctgagatcatgccactgcgctccagcctgggtgacagagtgagactccgtttcaaaaaaaaaagataa<br>aaaaat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	66036512	66036830	1000475	0	-	14541; RIP_Alu_chr1_065_02	NA	NA	SINE	Alu	Yb8	taaataagaagtactaatatttttcaaatgcattaagataacttgaaaaaaaaatgttccatagagtaaacgtcacataccaagatttttgtcttagact<br>ctacagacagggtatgatttgacatttaattctgtaattacagtaatattaattaacttaatttaaataagctatcttgaactaaggtttaaactatgtc<br>tccacacctaacagatatatattacagggaaatacaatcaaactagtattttcaatgatagtaatggataatgtggttgaggatttaaactagagtgttt<br>ttaaaaagccgggtgcagtggcttacgcctgtaatcccagcactttgggaagccaagacaggtggatcacttgaggtcaggagttc<font color="green"><u>AAGACTAGCCTGGC<br></u></font><font color="red">ACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTAGCCTGGC</u></font>caacatggtgaaaccccatctctactaaaaaaaatacaaaaattagccaggtatggtgttacacacc<br>tgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacccgagaggcagaggttggagtgagccgagatgcaccactgcactccagcctgg<br>gtgacagagcgaaactccatctcaaaaaataaataaataaataaataaatttttaaacatttttaaaattaaaaaataaaaataatgcaaggggcatccc<br>aaggaggactgagaatggtggcaagagggaaatggactgcttagtgacctctaggctggaggaacagtagagcaatagagcagtggatgtcttccaactc<br>tctattcaacagcagatta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:PDE4B:NM:001037341:1/17	
0	chr1	71513921	71514217	1000476	0	-	pAlu1-71125971; 21214; RIP_Alu_chr1_071_01	NA	NA	SINE	Alu	Yb8	cctgagaacccactcactttcagaagaacagcagcatgggggtaactgcccccatgattccattacctcttaccaggtccctcctatgacacatggggat<br>tatgggaatgacaattcaagataagatttgggtggggacacagccaaactgtatcagctacattgaacaaaatacctttttaaaatatctaaatgttatg<br>atgtgatatgatattattttgtcatgtattaactcaggtttatacataaagttttcaccagatccttggtaactacagccaatgttagatacaatattta<br>taatttcctaaataacatcccttctatgtaattaattctataaaaataaatgcattgatccagtaagaacagaacttttattcagtt<font color="green"><u>AAGAACAAGGAAC<br></u></font><font color="red">CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG<br>CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT<br>GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAG<br>AACAAGGAAC</u></font>tctccagagagtttagaaatcagggttaaaggcctcaaagtcatattaaacaaagtataaagtaatgtaacagactttacgttaaacatg<br>gaacattaaatctgtacatatatgtccatattatctggaaatcctactaaatgattgtaaaagaagaaaaaattttataaaataaagataaaatgactaa<br>gaaaaaaagacaacagccaataagcgtgccaacaatatttcagaaggtaagatgcaacaagatggctagtaactgagtataatctgtgttttctgtggtt<br>tcagtgactattaaaggaaaggagtgaagttggggtacaaaaatcaaaagaagcaagctgattcataccactaacaccataaggatttaggccttta	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	75784470	75784783	1000477	0	-	55223; pAlu1-75427689; RIP_Alu_chr1_075_01	NA	NA	SINE	Alu	Yb8	gatcctcttcagacatttttataacaagttagtatgagtttattttggtgcaaagtttttaaaatccatgcatggttctttttttcataatacacacttt<br>ccatgaaccttctgaagacccttaatataatcaccagattcctaggtaggagttagacattttcgaggactgattaaggagcattggaacaagacagagc<br>tagtcttcgattttagttagaagtttgtggcaagacttagaagtttcaaagttttacaaagtagaaaatggttgagtaacatagaatgtcggctgtaggt<br>gtccttaacatgttacattggaaatgtaaaaattaaagaaaaatgcgattaaaatttaaaaataggtttaaagataccactttt<font color="green"><u>AAAAATTTTGAATTTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAGGG<br>TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG<br>GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA<br>AAAAAAAAAAAAAA</font><font color="green"><u>AAAAATTTTGAATTTG</u></font>aacagtcttatgaagaataaaaatacaaactaaggagaagaactttcaaaaaaagaatgggctgggcacc<br>ttggctaggagttgtaaccccagcactttgggaagctgaggtgggaggatcacttgagcccaggagttcaagaccatcttgggtaacatagggagacccc<br>atctgggcaaaaaaaattagcttggtgtggtggcacacacccatcatcccagctacttgggaggttgagttgggacgaatcacttgagccgaggaggttg<br>aggtttcagtgagccatgcttgtgctgctgcaatccagcagcctgggtgacagaacaagaccctgactcaaagaaaaaaaaaaaaagaaaagaaaaaaga<br>atggttaattaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:SLC44A5:NM:001130058:1/24	
0	chr1	81124118	81124119	1000478	0	+	8258; RIP_Alu_chr1_081_01	NA	NA	SINE	Alu	Ya5/8	tactggtcatattatatgctagctaattctctaagatttgtcagttaaacatttgcccatatgtaaattttaacagacactaatatattcctttccaaga<br>tgattttaatagtctgtctccccattggctttacttacacaagtatttttcatgctactctgtgatagtactgaaaatttatcagtactgctcacttatg<br>cttatctgatgaattttgtgtttttctgtcatcagtcatttctgtaaacctaaaggatctattaaatactttctcgtttctcagcacacactcttagtaa<br>tgtttcccacagagattattaaaagaaacaaatagttactttatacatttaaaaagctataatcccatcctaactttaagagagtctaaaa<font color="green"><u>GAAAATTGC<br></u></font><font color="red">GCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAG<br>CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTGC</u></font>ttatcctcataatcaggaaagggggattagatggttaccaagtttatttaatg<br>aaaaaaacaaaccttaagatgaaccaaatattcttagcaaaaagtaaggaaatcattaatgtattatagttatgattttgagcatctacttcatgccaga<br>cttcatacacatatctttccttatccttacagcatcactgggaattaaatagttgacccattttaaacgctatggaataggctctcaagagagtaagttg<br>tataaagtcataaaactggacattactagagcccagtttttaaccaagttctttctgtgaaatgattcgcattttcttcccagaaatgtatacaatttac<br>tctgctgcactgttaacaatcacttataccacctggct	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	82815243	82815552	1000479	0	-	545; RIP_Alu_chr1_082_01	NA	NA	SINE	Alu	Ya5	atcagcagatgtatagttaccatggcagcagacaagatatggatgatattaggcaaataaaagtaaacaaagataataatatttaaaagatagaattttg<br>ggcagaaaggtaatttgatcaacactttagttgatgggttttttcaactttaagaattatagggattatatcttaatttcaagatatttaaataattatt<br>attttaaattaattggattatttttaataattagtcacagactaaacaagaaggaaaattctaccagatagaaatataaagattccattttataatgtct<br>gtcaatatagcagaaattaaaatgtaagtaaataaataaaatagaggttaaacaattttctcataaaagttgacaaaaaaatttaaagtt<font color="green"><u>AAAAATATAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>AAAAATATAA</u></font>atacaagctacataggaattaatgagagtaaaacattttgataaaagttaagcaatgtaattaaaatcaatatttaaagt<br>tcaattaaagatgtgaattgagagccaggacagcaacaaaagcaattgcaaggaaaaataataccaaatataaagacaaattaatgaattagaaaaataa<br>aacatgacccagtaaattataaagaagaaagtatagcaacaaaggtggagtttttgttttaagttatacatttgctttttgaaaatatgtgttaaatatt<br>tgaaattttcaataaacagagtcattttctaggaaataaatatttattcaagaaaagcaaactatactgatgaattatcatggaggagactgaaaacatc<br>atcaaaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	94024056	94024359	1000480	0	+	10372; RIP_Alu_chr1_093_01	NA	NA	SINE	Alu	Y	aatgtgctagctataccaaacatgtctgtgaaccatatttggatgtatacaaaaagatctagctatatcacaggattgtgagaaggataaaatgagatgg<br>aatagaaccaacaataattaactagtgaatatgcatcattaatgcttttaagaaaaacccacagatataatacaaaataggtcagggtctggtgacaggt<br>tgtactttccaaagatggctgcaataacatttcccatccacatgctatttttataaggtaaccatgacactttttctatcaaatggtggaggttactttt<br>cctcccctgaatctgagtgggactttatgaattcctgaaacaatagtatagtggaaattatacgatgtgacttccaaagctagtaagtcat<font color="green"><u>AAAAGTGCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCCGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGTGCC</u></font>atgcatttctgccttgctccctgggaatgctcatacctgtaacccagcctcaatactatgagggagcccaaggcccctgtggagtgc<br>agaggaccatgttgacaggaaccaaagcacccagctcacacacttagctgggctcttagccaaaagctagctctaactggctagctatgtgagtaaacta<br>tctcgaaagtgggtcctccagctcccatttaagtagccccagctgagaccatggagagcagagacaaagccattcctgctcagtcttgcctaaattacag<br>attcataatcaaaataaatgaatgtcattgctttaagtcactaagcttaggagtgactttttacacagaaatagataaggggaacaggatcaaatgttga<br>attt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	95463113	95463417	1000481	0	+	7377; RIP_Alu_chr1_095_01	NA	NA	SINE	Alu	Ya5	gccattctataagatttcatgatctcagaaatcaagtcatcaaggaaatgacaaaataatgcatgtacaagccatcttgtctgctgcctggctaatgcca<br>aggcgagatgccattgatgttttggagcttcttgatttcagagacgttaaaatatatataaaaaatgcatctaaaaagtgatatacagtctgggcatggt<br>agctcacacctgtaatcccagcactttgggatgctgaggcagaaggatcatttgaggccaggagtttgagaacagcctggacaacacagcaagaccctgt<br>ttctacaaataataataataaaataaaaagtgatacataaagaatactagactgcccatatcactacaggtacctcactttgtcaa<font color="green"><u>AAATAAATATAATT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC<br>GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>TAAAT</font><font color="green"><u>AAATAAATATAATT</u></font>ataaaattatttgaaatagcgagtttgtttaatgcattaaaaattatttgaataattgctggctgcagtggctcctgtctg<br>taatcctagcactttggaaggctgatgtgagtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaa<br>tacaaaaaaattaggcaggcatcgtggctcatgcctgtagtcccagctactcaggaggctaaggcaagagaatcacttgaacccaggaggtggaggttgc<br>agtgagctgagattgtgccactgcactccagccttggtgacagcaagacttggtctcaaaaaaaaaaaataaaaaatttgagtaactactcagtctgtgt<br>aaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	102820281	102820596	1000482	0	+	7148; pAlu1-102338773; RIP_Alu_chr1_102_01	NA	NA	SINE	Alu	Yc1	tcccacccttgacacctggagattatttcaattcaaggtgggattttgatggtgaaactgagccaaaccacgtctgtgagccaagatatctacattcatc<br>atcaaaatgggaccttcggaatttcctcagtgaggttactaaccctagccatgcatatccacgccataccacactgactagattcactaaggtctgtcat<br>aaggaaggcatccaaattgaatagcattttataactgaggagcactagagagaaaaggtgtgatcatagcataagatttgttctgcttcaccccagaagt<br>ccacaaatgggaaaaatgagggcagctttaatttgctagaaaaaagcaacacctgtattttgagtatatatcaaaccctgaggatt<font color="green"><u>AAAGTTCTTGTTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTTCTTGTTTC</u></font>agctctccatctaatggattatagtatacaaagttcagctttttcggttactgcttttaaagttttctaa<br>tatgattaatagctttaacaaaaaggtatctcttaagtgtgcaatatagttgctttctctcacatagacagtcttgtttggaaacaatttcttttgatgt<br>agttctaaagaaatatttacctttaacaggaacactagatattttttcaatgcagaagctttttttctgttataaagagagcaataatctgtagtataaa<br>gaattaaaatttaaaactaactactgtattgaatgaagactttgatttatacctaataaattttagaaagttttaaaagctaattttataaattatttta<br>gtcaatttaagggata	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	102868669	102868973	1000483	0	-	53299; pAlu1-102387157; RIP_Alu_chr1_102_02	NA	NA	SINE	Alu	Ya5	acaaaggttagctttctcgtggttcaaaaaataggctttaatattttttctttttttaaaatgaatccagaaactataagaaagtcttggcaaatcatgg<br>aactagactcttctttttatttctaatatatcagtgtcaatatttttaatagagtctacatggcattaccctagtcattattcatttaaaaataccaaaa<br>caaacaaacttgctaatccaatctgtaaaatggccatgagtttaattttgcaaatgttattgagatctatttagtaagagtgggatatccatcaagagtc<br>ataatgatatttataaaatatgtatagctgcctagtctacttaaaaggaacatccagcacaatcagggcaataactacctttttat<font color="green"><u>AAAACATTATTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAACATTATTACT</u></font>gttctattagtgctataaacaaagtattgtgctactccagtgaaatgaacattattcaccaattggaaccagcaaagattc<br>catgaaatgctaattgaaacttggattttgatgggcatatatgagggatagtagggaacttcaagaaaaaaagcgtggtgtgcaatctgccacaaaaatg<br>ggatgaaccctagcaattgttgctgtcagcaagatgtctaggtgatgactactactttcttctcttgctttggcctgctaactggttctgctgccttctt<br>gagagcacacaccttgaactgctgctggctggctatgatgctcatcagctcatgttgggcttgcactttgagcactattcccttgtgctgctttgtgctg<br>catat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	105229844	105230162	1000484	0	-	5866; pAlu1-104585259; RIP_Alu_chr1_105_01	NA	NA	SINE	Alu	Ya5	cagtccttaagaatcttggcatgactaacataagtgaatttgtattaactatgagaaaatatcaaggaaaaggattatagatgtccatgttagataatcg<br>gagctcatgtttttgtctctaatgactcattattctttacaaatattcataactaatttatctgtgaccaaaaactatatttcatcaattctaagatgca<br>taatttttacattttaaaatatcttaaattatagtgcatatgaaaaagcaaaggaaaatatcaacagagtaaacagaccacctacagaatgggagaaaat<br>attcacaaactctgcatccaacaaagatctaatatccggaatctataaggaactttaacaaatcaacaagccaaaaaaaacaaaccatt<font color="green"><u>AAAAATGGGCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA<br>ACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATGGGCA</u></font>aagtacattaacaaacacttatcaaaaaaagacatacatggagccaacaagcataggaaaaaatgctcaa<br>catcagtaatcatcagataaatgcaaatcaaagccacaatgaggtaccatcaaacaccagtcaaaatggctattattaaaatgccaaaaaaataacagaa<br>gctggtaaggttatggagaaaaggaaatgcttatgcattactggaggaaatgtaaattagttcagccactgtggaaagcagtttggagatttctcaaaga<br>atttaaagtaaaactaccattcgatccagctttgccattactgagtaaatacccaaaagcaaacaaagcattctaccaaaaacacacatgcacttgcatg<br>ttcattgtagcactattca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr1	112793519	112793520	1000485	0	+	32729; RIP_Alu_chr1_112_01	NA	NA	SINE	Alu	Ya5	ctatggaaaatataacatcagtgatcctttaatggctctacagagagattttgaaacactgaaggagaaaaatgatggcgaaaagcagccagtctgcaca<br>aatccactctctattcttaaggttgtgatgaagcagtgcaagaacatgcaggagcgcatgctgtcccagctggctgctgctgagagcaggcaccgaaagg<br>taggttcacctcagttgatgtgtaaatctttgtgaagtctttataaattatgcctgatactttcttgtcagctgccagtttttcacagtaattcaattgg<br>gacatctcacgggtatcaaaaagccccttagtttatgtaagagccaggagataaaaaagaaaacacagcttattgcaaatgttaag<font color="green"><u>AAATAACGTGTCTG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAATAACGTGTCTG</u></font>aagacagcatttcttcttgatatgtcactccaaaacactttgtatgttttttcagttcttgatcattcaaactttggggtttgg<br>ccaagcttgtagctgacgggagtgttctctatttgcttacttaagagataaataaaaagattaacaggtatttgaggcatgctatatccaagggagagaa<br>agaatttacctgaggataaacacagaagccaatagattattttcatttattcctattattcctagttttgagtttcattgcattttgttgctcatgaaac<br>cataaacagtcccttggtttatttaccttaaaggtgttctactctattagtgaggggtgtgtgtgtgtgtgtgtgtgtgtgttttccatatttaacaagc<br>cc	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CTTNBP2NL:NM:018704:4/6	
0	chr1	114845054	114845355	1000486	0	+	14400; RIP_Alu_chr1_114_02	NA	NA	SINE	Alu	Ya5	agtttttaaaatgaactttcacaagataatacattttagtataagagtgagcaaaaggtgaatggccaaggtttgtcttggaaaaagaaattttttaatt<br>aaaaaaaaaaaaaggagcaaaaggtcaagatcagtcgagataatcttgaagatgaccaaggtatacgtagagagggcagtgaaattaccttaatgaacaa<br>aacttactgcttattattataaagctactaagaacagcaaaaaaaaaaggaggaaaaactattttaatataaaaacatgaaaagacagctctctaaaaag<br>tgtatcagttatctattgctatgtaacaaattacctcaaaaattaatgacttaaaacaacaataattatttctcacagctttcttgaaac<font color="green"><u>AAGAATTTGG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAGAATTTGG</u></font>gagggacttggcaggcagttctggcttagtgcctctaagaaggctgcagtcaagatgtcagccaggaaggactgcagtcatctgaaag<br>cttgattaggatagagaatctacctcaaaagcggctctttcacatagctggcaagttggtgctgggtctttgcagaagacctcaatttttctccatatgg<br>cctctttaaaggactactagagtatctttcacagaatgacagctgtttttcacccagaacaagggattcaaagagcaaggaaaaaactgtatatatggct<br>ttaatgactttttaataaagtcactattaattctattatattctcttggtcacggagaccagccttgagcaactggacagcaaccatacaacggtgtgaa<br>ta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TRIM33:NM:015906:1/20	
0	chr1	204599779	204600096	1000487	0	-	17726; RIP_Alu_chr1_141_01	NA	NA	SINE	Alu	Ya5	atagaagctcccttaattggtcttcccttgctgcttccaccctactcctcctaaagcactctcttcacacagaagctggaataatcccatttaaacagaa<br>gtcagactgtatcatgcctctccagtcctccagtagcctccaaggcccttcctgaagaaacctgctcgctgccccagaccacatctcccaccactcttcc<br>tcttgcctactctgtacaaggtctccttactgtttctcaaaccagataagcgcattcccatctcatggccttagatgtgcactattatctctgcctgaaa<br>taccttcctcaaagagctaaacagcaaaatccctcatttcctccaagaatcagttccaatgccaatttatcagtgaagccgtctct<font color="green"><u>AAAAGAGCAATATC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAGAGCAATATC</u></font>cttgtaccccatcctctttgccctgtttcattttatcatcatctgatatattatatatttacttttttatgtattatctgtt<br>tcaactattagaatataagctccatgaaggcaagaactttttgttatctgctatattccagtgcctagcacagtgcctggaacatgggaggcacactgta<br>aatatctgctgaatgactaagtgaactgctgaatgactaagttgaatgacctcctcccacctcatgtcaggccactcagtcctgtctataatgtctttcc<br>tctgccttctggtaaatctaattcttttagttcccattgtcattatccaagtttctattatccctctgaattattgtagcaggctcctatatagtttctt<br>ccat	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SRGAP2:NM:001042758:1/18	
0	chr1	145124845	145124846	1000488	0	+	11425; RIP_Alu_chr1_143_01	NA	NA	SINE	Alu	Ya5	tgactgtgagcctagaaagttgaaagtaatttctttattgagaaaataaagacatggttcctaaggaaaagggctaaaaatgaccatgtttcaagtacac<br>tagtgaatagcaagtgaaacaaaatgtcttaagcatctatatgtcttatcttagatacatacaactattgtaggaacattatttctcttatctctcagga<br>aacatatttagttataatatgaaaaaaaactaaaattgagcttctaatagaaaatcaaaccctatcagaagaagagttacgtggagtaagcgattttata<br>ccgatgctgacttactctccctaccataaaatttgataaacaacaaacatttattaagcacctaccacatgtcaagaactctgcta<font color="green"><u>AAAGACATACAAAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAAA<br>AA</font><font color="green"><u>AAAGACATACAAAG</u></font>cctgagctcccagtctagggattaccacaaggaagagtgacggatcatgagtggaagggagatgagttaatacaaatggaaaac<br>aggtttcattgtaggaaaaaggaaagtgaattaatgctttcgaaagagacattaaagtagatttctgggcaatatgaaactgagagtcaatctcgtcaga<br>ttctgaaggcatctgtagataagcttcccaatgaaaaacagggcagtgacaataggacaactagaagtaagctataattatagcaaagaaggcaagagct<br>agcataaacttgcctattgtcattgttgaagtcatagaactactcctttcaactactcttgtcatcagaggcttcctgatgcgatcatctgtggtgagga<br>ta	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	exon:3UTR:FMO5:NM_001461	
0	chr1	181218647	181218931	1000489	0	-	238935; Yg6AH108; RIP_Alu_chr1_179_01	GCGAAGCATGTGCCACACCATG	GTTAGGGCTTTAAGAGTGTATGAG	SINE	Alu	Yg6	aatggcaaattttgttatgtatattttacaacttttttttttaggaaagtgaacaatgcacgttggaatctatagtgcaactgctagaagaatagtaaaa<br>gaatatataacaagcaagctattcgaggtgaaaaatcaaatagaaaatgattcctttttacctgtctatgtacaatgcaataaaaagttattaataaaaa<br>tgtattcaggtgaaaaatatactgaaaatgttcactaaaataatagtaaaaattgtgtgttagggcattaagagtgtatgagatttgttggcctcagttg<br>tctaaattctctatactatggctattggctcataatatactgctttgtcataaaaccacctctatcatgtaaaaaatcttgctt<font color="green"><u>AAAAAAGTGATTTACT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGTGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGCT<br>TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTGATTTAC<br>T</u></font>gtttcaagtggatatcagatctgagctgtttgtgagacaattattaaaagaaccactaatagaagtcacagtttctatcaacttagaaatctttcaaaa<br>cagaatatctctggttttcctaaccatggtgtggcacatgcttcgctatagcaagttgtacttaggcattttagataaaaagtaggtaactcatctggat<br>aatttactcataatatgttcactttcagcaaaagcttaaccaatatctgatcagtacttggatgaaaattaagtccatgcatcaacacattagctacaaa<br>aggacaagttcttgttgtgtctaatataaattctctgttagttttcagttgcagcacacaaaaaaagttcagtttgttctagaac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12777511">PMID:12777511</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr1	195045816	195045817	1000490	0	+	2978; RIP_Alu_chr1_193_02	NA	NA	SINE	Alu	Ya1	aaccctcgggggtccagttctacactgttctttccctctttgcaataaatcttgctgctgctcactctttggttccacactgcatttatgagctgtaaca<br>ctcactgcagaggtctgcagcttcactcttgaggccagccagtgagaccacgaacccactaagaggaacgaacaactccagatgggaggaacgaacaact<br>ccagatgggaggaacgaacaacaccagacatcccaccttaagagctgtgacactcactgaaggtctgcagcttcactcctgaagccagtgagaccacgaa<br>cccaccagaaggaagaagctccaaacgtgtgaacatcagaaggaacaaactccagatgcatcacctttaagaactgtaacactcaccg<font color="green"><u>AAGAATGAAGCC<br></u></font><font color="red">ACGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAGAATGAAGCC</u></font>aagtcagtgagaccaagaacccactaattccagacacactaccattactaaaacaaaatgccatggatctgggaa<br>gcagcaggcttgagcaacatcattactggagtgatgtatagcatatgcttcagtgaaacaaaggaaattcaggtttctcacacacacacatgctgatgtg<br>gtttgtatctgtagaaaaaatgcatcctgtatgacccagtggtggtaggacaaagaagtctgcgtgtgagttctatggatggatccctcaacgaacaacc<br>ctctcctactgctgctgtgccctttgcctgtgatacagcctttttgtgagcataagttgtttgagtcctgtgaattccttcagcaatccaacaccaacat<br>tcttaccacctgg	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	215820714	215821000	1000491	0	+	18079; RIP_Alu_chr1_214_01	NA	NA	SINE	Alu	Yb9	tgaaacattagtaattatgatgctgatctctagtaagctaacctttcaacttacaaatcaataaaagctaataggtaaacaattttacttctagaaaaac<br>aaatctgtatcaaacaagaagtgcttatatttactaaagtatatatgattatggtgaaaattttccccgttatctcaaaatggcagcaaagagaactgct<br>cacctcctactataatttttctttataattagtgtacagcattaccttcggtaatctcaatcctttcacttttatcatcctcctcctttaaaatctttcc<br>tttccccaactatcttctcaagctttgctacttactaagagtgggtcccaggccagcatcatcagcatcttctgggagcccatt<font color="green"><u>AGAAAGGCAGAATCTC<br></u></font><font color="red">CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA<br>ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTTGAACCCGGGAAGCGGAGCTTG<br>CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAGGCAGAAT<br>CTC</u></font>aagttcctcccacgacttattaaatcagaattgacattttaacaagatccactcccaccagccccaagatccgctgggagattaaatttaagcatct<br>ccgctctacacttggtggaaaggatttctagcctcacggtctgtgtctcttgttcttaccctttatatgttttcattggtcctcaggttaataaggttag<br>taagcatcttaaaaactattgatttcaaaacttccattttacagataaactagaaataaactttaatgcctagcacaagaccttacaagaaaaggccctt<br>aataaaagacaagttggaagacaaaggcaagatgacagagaagttgaagctaaaagaggttaaggatttagacggtttctatagcta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:GPATCH2:NM:018040:5/10	
0	chr1	217989947	217990249	1000492	0	-	865; RIP_Alu_chr1_216_01	NA	NA	SINE	Alu	Yb3a1	tggcaaatcaaggaaacatgtccattcacctcttttcatctggtgatttgcttcttcaagctaaaaatctcaagttgcagttctggcattagtttcttta<br>ggaaaactgagattgctttacaaggtctcacatcttcagttgaaagtcagatcagtttccatatccagaaaagtagcttcctctaatctgctgttttgct<br>ttctgcagtttcagttacctgcagtcaatggtggtcagaaaatggaaaattccagaaataaacaattcatgtgtttaaaattatgtgccgtttgagtagc<br>atgatgaaatgtagtgccatcctactctgccttccccagggaatcttccctttgtacagcatcaccatgctctaagatccaagtt<font color="green"><u>AAGAATGAGTCCATA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCAGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAGAATGAGTCCATA</u></font>aaattgtgaagaagggaaaagaaattctttccggttttgctgtcacacctcagactgcaagttacaaccacggtgtgtgatg<br>agagttaagatgaagaaggcattaaatttgtgtgtggaagacacaaatagaaatgcattctggttgatagcaatcagatttggtactatccatggtttca<br>gacatccactgggagtgttggaacatatcctcctggagaagggagcaactgctgttcttaaccgggtgaatctcacacccagagcttgctatttgcatat<br>agttctctatcactgatgcatttattaacaagatataccatcaagagggtttttgattaattgtttggcagtctcagtgtgtcctggctcacaagagcta<br>atc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	222459458	222459757	1000493	0	-	8542; RIP_Alu_chr1_220_01	NA	NA	SINE	Alu	Ya1	tggctctgtgagctctggtctagtgtctacgcagaggacaccaagcaggccctgggacacagcaatcctgagtgtgtttggagcagaaagcagcccatgg<br>tggctggaccacagggagagatggcctgggagagtcaggcaggagcctaatcatatggtttacagccctgcgtgtgtgtgttggggttgggggggggggg<br>ctgggtgtgtgtatgtgagcaacgtgtgagtcatgtgggatgggaggcccccttgcactttccttctcagccccttgccacctgacatccacactcacac<br>atcctcacaggcagttccgttttgaaaacctgatttcatgtggccagtccagtcttaggacaaatatatattcatagaaggcaattt<font color="green"><u>AAAAAGCCAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>AAAAAGCCAAGTC</u></font>atctcaacccgagctacactagatgcacggctgtgtcagttaccagagtccagctcggtgttggctaatagtggaagcacaacttcc<br>attgccaaagctcagagacagaaactccggagatggagcaggcagataagtgtgtggctggcgcagagccaggccctcggagatgacgagcatgtctctc<br>accagccccttctgcagtgagtggctgtcccacgggtctctccagctgccaggggagaatgaattagggtgttgagaattacccaaacccaaggctgggg<br>agggtgtgactccatctaggccagtccttgtctttgctaatccagcatgacccaggcctgctgtggaatattttggaatatattggaatatttggaatat<br>	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	226090730	226091023	1000494	0	+	33258; RIP_Alu_chr1_224_01	NA	NA	SINE	Alu	Ya5	ggcaggacgatagcttaaggccaggagtttgagaaaagcctgggcaacatagcaagactttggttataaaagagagattttgtttgtttgttttttactt<br>ttttttttttcgagacaaggtcttgctctgttgcccagactggagtgcagtaatatgaacacagcttattgcagcctcaacctcctaggctccagcgatc<br>cttcttcctcagcctcctgagtagctgggaccacaggcatgcaccatcatatccaggtaattttctttattttttgtagagatgggggtctcattttact<br>gcccaggctggcctcaagggatcctcccgcttctcaaagtgctgggattacaggtgtgagccaccacaccaagccaaaaaagttttt<font color="green"><u>AATAAAAGCTTCC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA</font><font color="green"><u>AATAAA<br>AGCTTCC</u></font>cttccataacagaattttcattggaaactctcatctttcatgtgagaatgcctttattttatactctacatttttatttgagacattgtttac<br>aaactctaaaatccacaaatattgtgtacagctgaattatgttaacatattcttttttcattttttaaaatgttatttcttgtaacattggagttacaat<br>gaatttttaaagcaaattccagatactatatttcatccataaatatttcagtgtagacaaacattttatttatatatttatttaatcttattttattctt<br>ttagtggcagggtcttgctctgtcacccaggctggagtgcagcggcacagtcatagttcactgccgcctctaactcttgggctcaaatgatcct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MPN2:NM:183062:3/5	
0	chr1	229151786	229151787	1000495	0	+	16963; RIP_Alu_chr1_227_02	NA	NA	SINE	Alu	Yb8	ctgttcactgtatggatgtcagccattcattccacaattatttactcagggcctactgttagctatctcaggttccatgtgctaggaataccatgcaaag<br>tcatgctattcttgccacatactaggaatagcaagcaaaaaccaacacagaagacaaagatttgcctatcagatcaaagtcagctctgctaagcctattc<br>ttcccaaagggaagcaagcaggacaacatggctaataatagtggggtgcaggtcaatggaaaacaagagcccgatccagggtaacaggaaggcaaagctc<br>tatgacagatgtgccacagtgaatgacgtatggtggccctccagctcttgcagctggaacatttttatagtaataaaaattttaaatt<font color="green"><u>AAAAAAAAAAAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCNNAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAA</u></font>aatttgcaacagctgaaatatccgaacactgacaacttcctaaaggtagccatcatcatcttgactgcaggattggatg<br>tgtgccccacacagaggccctcgcacgggcctcccctcaagtcaccccatggtctcatcattactacagcactgaattgattactgtgcttatctgtaaa<br>gtatttaggttttctctattcaatttattctttccttttttttttattttttatttttgagacgaagtctcgctgtcgcccaggctggactgcagtggcg<br>cgatcttggctcactgcaagttccacctccagggttcacgccattctcccgcctcagcctcctgagtagctgggactacaggcgccagccaccatgccca<br>gctaatttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TTC13:NM:024525:4/23	
0	chr1	230489757	230490069	1000496	0	-	10270; RIP_Alu_chr1_228_01	NA	NA	SINE	Alu	Yb8	ttaagtaaacacctaaatgtcatcccaaggagaattgctcaagaatttttattagtttggatgaattcttccttccttcctttctctctcttgttttaac<br>ttcttcaaaatttaatacacattctctgtcctggtttagtctttccactttccactgggcaataacagaaaacagcttgcattgtacactttgtttaaaa<br>aattgtttccaatgaagcaccaggagggaacattaggagtctgaggtccaatgactgcagttggcttatcaggccagttgcacaagtcagctccagtctc<br>tggacctcggtttcctgatctgcaaatggaatcagagttatagtctcccagcttcaccctcagagaaagcataaaacatgggttt<font color="green"><u>AAAAAATTACCCTTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTACCCTTC</u></font>atcgagtgtttggaggttaggactgcagaaatgcatcaactgacatcatcttctttgagaactttaggagat<br>ttaatgatatctaattcaaccttactaaatgcttgcaaggtacatgaacaatagtgttacacagtgagagatcaccagcttgatttatttatatataaaa<br>tatattattgtaattataatacattaatattaacatattatgaatatattatatactaatgtattactaattatatactaatgtatgatgtaatatataa<br>caatatattaatataacagacattaatctacatagcattatatactatatattaaaattatatataaaaatataaatatataatacataatatatataca<br>ttaatatagtgta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	232653835	232654135	1000497	0	+	pAlu1-230962376; 239259; RIP_Alu_chr1_230_01	NA	NA	SINE	Alu	Ya5	taccctcctcacaagtttattttctatcatacgtgcatattaaaatactgcatattaatttaaaagagaaacactgtccgaggccttctccattacatct<br>cttagaaggtttgcaaataaaagtcacataatttcacaactcatctttggtcacgtataatggtgaaacttttgttttaaaatctaaatatgttctcaat<br>ttcctttttataatatctgtcttaataagcaaattcaataactgagtttaaatatgaagaaaataattatgaaatgagtctttctaaaaagtaagcattt<br>ttgaaaaattattttttgtgtccattagggttacccaaagtttactataaggaggcaaaggaagaatacatcacctgaccaaagataaaac<font color="green"><u>TGATGAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC<br>GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>TGATGAATG</u></font>actggatcatcgaagtggtcaggactaaaagacaccacacaggtacaatgagtgagcaagtcaatgacgctaaaggaggttgttctgtgt<br>aggtctttatcaagtcggataatcttaagatattattgtctaacagtgaggtcagccggtatttatcttttaacagtatacacttttctttgcattcctc<br>taaaactggccagactgcgttgcctaattattgctacaaaatacgtgaggcttttcgaatcttgtatttccacaggcatgattctgctgtatcaaaatta<br>tttttgacaactaaactctaattcatatttgatttttttctttccctctatcaaatctgtcacaaaattcagaatattttcccttcaaagacttttcatg<br>t	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:TARBP1:NM:005646:9/30	
0	chr1	234121215	234121536	1000498	0	-	Yb8NBC485; 238508; RIP_Alu_chr1_232_01	TGTTCTTGCCAGAAAGTTTGC	CCAATCCAGGACTCGACATT	SINE	Alu	Yb8	tttgaatgataaacaccacattctggataaggatgatctctaggaagaggccatgggagaaacatatcaatgaagtctcatatccataatgttgtcattt<br>taaatgcaagtcttattttgggataatttatggaaaaattgcaaatgtagtccaaagagttcccatataccccttcgtcccattccccccagtgttgaca<br>tcttacataaccatggtacagaaatgaacataactcagaaattaacactggtacaactaaacgttagattttattcagatttcaccagttttttcacaaa<br>cgccctttttccatttcaggatccaatccaggactcgacattacacttagcacacctatattgttttatatgtttgaaaagttt<font color="green"><u>GAAAAAATGTTGGCAA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAGAAAAAAAAAGAAAAA</font><font color="green"><u>GAAAAAATGTTGGCAA</u></font>actttctggcaagaacagaaacttcattatattgctttctggccattattggagggaacata<br>gtgcttatgagggaggctctggagataagacaagcaatccagcttcaaattctggctcaagcactctctagctgtgtgcttaatctctctgagcctaaat<br>ttcctcaactcaaaaatagggatgataacagtatgtaccacttaggcttactctgagatttacatggattaagtcacacaaggcaactagaaattgtgat<br>caagaaatgttagctattattattaattgcatatgtaattcacaacacaatttttctaaaaatagctcctttgagagtctctggagtccatcttaataag<br>aaatcacaaccttcattgtaaa	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	58	433	95	NA	intergenic
0	chr1	234661563	234661873	1000499	0	+	52547; RIP_Alu_chr1_232_02	NA	NA	SINE	Alu	Yb8	ttgagcttcctttttcgagtgatgccgaggaaaaacatcatagtgtcctagtgtcaaaaattaaagtctaagccaggcatgcttgtggtcccagctactc<br>aggaggctgaggtgggaggatcgcttgagaactggagtttgaggctagtctggcaacatagcaagacctgtctcttaaacaaaacaaaacattaaggtct<br>gacatttcaagtgcaatttcagaaagaaccctttacttttagttatttaaaatcaataccccatctactagaactattcaacttctacaacttattacaa<br>ctggtatttattgaggatatactctaagaccaatctgaactgggtattcttggacataaaaaatacaggaggaggaggtggaagtt<font color="green"><u>AAGACCCCAGGCAG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAA</font><font color="green"><u>AAGACCCCAGGCAG</u></font>accttatagacttgttggagaggcagtgcacacagtttgattctcggatgtgtgtaaggctcagatgtgtaaaca<br>atttccatgatactttaaggaaaacatttcctaggacctttatcaatcaataaagttttaattactttaacgacatgcataagcatatggcaaatgaaga<br>taaagcaaaaatttgttccagctgggtacggaggctcacacctgtaatcccagcactttgggaggccaaggtcagcaaaacctgaactctacaaaaaata<br>caaaaattaaccacacctgtggtcccatggtcccagctgctcaggaggctgaggtgagaggatcgcttaaacctgggaagcagaggttgcagggaatgga<br>aatcgtgccac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:EDARADD:NM:145861:4/6	
0	chr1	239216497	239216804	1000500	0	-	pAlu1-237446358; 15544; RIP_Alu_chr1_237_02	NA	NA	SINE	Alu	Ye5	gctgaaaattatgaaaatacttgagttttgtaaaggatgcaaatcaaatgtgttctattttgcttgcttacagagtcctcatatcttatatttacaaata<br>ttttgcaatttttttcatgaatgcttaatatttttgtgcacctctaattcagatttagtttgtggatagctgtaggtgacacttgtagctgaggatgtgc<br>tctaatcctggggaggggtgcagacgtggaccgtaatggaagtaatacaggcttaggacagagcctggtccaggcctttgcactctgcagggggcacagg<br>taaggaagctcgtttgccgttcagatccgtggcatgggtgaaaaaataatgttgaagtttaagatcaatttaacatcatgttt<font color="green"><u>AATAATAGTGGTGTTTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAA</font><font color="green"><u>AATAATAGTGGTGTTTA</u></font>aattacatgccagtagaatattctttgcatgaaggatactattctttttaaactctgtgaaaatagaatttgggg<br>aggggagtcttgctatttattcattcaatcttttgttgaggggtgggcacaacaggcttcctggagtagataatgtttgaattgaactttatggcctcag<br>ttgggattcaccacaggaaaaagagatgaagatagaagagcattagcaaaatcatggaaggaagaaacagtatagcaggtagaaaactatgagcagtgtg<br>atgaggaagaattctgcttgtttgtttttgcttgttttcattttaaataatatactgctaggattcgacagtaataaaacctctactgcttctgctgagc<br>agacggag	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:RGS7:NM:002924:3/18	
0	chr20	2462992	2463089	1000501	0	+	19981; RIP_Alu_chr20_002_01	NA	NA	SINE	Alu	Y?	gttcagtatctgacttccaaacttggatttttgaattccttagaaataattgtggaaagcagggtttgttgtgagagagaagaaatctgccaattcctag<br>atcactccttcagacaccaagggctaaacccagccaccagacagcaaaaacacatcagcccctgaggacaagggtctctgtttcatttgctgatgaatcc<br>ccagagccgagaactgactctgaccccagtgggtgctcatttttatctgtgaggagaaaagtggagttatcgactgtgtggacagtcaggtacaagggaa<br>tttgatagtcctatctggagggaatttctctccggagatgaaggtgttgtagaaagcctttctcctctggcaacagagaacaac<font color="green"><u>AAGAGCAGGGTAAAGG<br></u></font><font color="red">CAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AA<br>GAGCAGGGTAAAGG</u></font>gctgctgggggtcctcactcatcaggggagagcgcttggggcacccccagcagaaaccttactcaccagtcctctgggccacgctg<br>tcctgtggctgcacagctgcccgtgctgcttctcacatggaccggggtcctgcactggcatggccctggtggggagagggatttgcggctgcagtcctgc<br>agtatggatgccagagaatgcaactgagatcctcccactgccctcatgccccggggactggggcggccctgcaggaaccagttgggtcggagatcaaggt<br>gtgggacaaagagaaaagcttcaaagcttgagatgaaccgttgcacgtgcattttagaggtagctcctttgccccttccctcgccaagcttgcatgag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr20	11465279	11465588	1000502	0	+	79712; RIP_Alu_chr20_011_01	CATCCCTATATTACCCACTCCAGAGC	CACTCACTATCTATCGTCATCCAGC	SINE	Alu	Sx	agagctgtgatcataaaagctaactaaatactgccatgaaacagctaggatttggatgcagaaacagagtgccagagaaacactaaacaaaatgacaaac<br>cacagttaggatctcaggaattgagaagatggacctgtctggcagctgaaaacattgatgtccatcattaatgcagagtcaggacttcccagagacgaaa<br>ttcttctgcaggaaaaagggtgcaaccatcagcctctgcccttcctccatgtgagatctctttctcagtctccagggaagcaatgtccttttgcttccta<br>ctaaatacctggacctctccatccctatattacccactccagagcaatttgcacagtgctccacactttcccctaattccttctctt<font color="green"><u>CAAATTCTGTCTT<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACAT<br>AGTGAAACCCCGTCTCTACTAAAATACAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAATCTCAGCTACTTGGGAGCCTGAGGCAGGAGAATCGCTT<br>GAACCCAGGAGGCGGAGGTTGCAGTGACCCAAGATCGCGCCATTGCACTCCAGCCTGGCAACAGAGCGAGACTGCCTCAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAA</font><font color="green"><u>CAAATTCTGTCTT</u></font>acgtgcaaacttccaggatttagctgtccgctggatgacgatagatagtgagtggattaataaaagctatactccta<br>gcaaaatgttttgttagatctcagtagcaatgcctcaactgtacaaatgtgcagactttcataattgcccttaagtattcactaatcctggaaatttcaa<br>gcaaagtagctatctctctgtgtggagaaaagatgttaagttatttgaggttttcagcatgctgaagtttacattataaaaggaattgctaattccacct<br>acacccttgaaggagggccatccattaacaagagaaagcaataccttagggcaaagtttctgcctatctgcaagggaatataccaattactaagacaact<br>ttatccccta	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr20	22603338	22603650	1000503	0	+	15678; RIP_Alu_chr20_022_01	NA	NA	SINE	Alu	Yb3a2	actggtttctttatgctgtcaccatcatatcatttcatccagtaaatgttttgctgtgtaccactaaaatataagaagtcatcttaaaaaatataatcat<br>atcgactggataaagaaaatgtggtacaaatacaccatggaataccatgcagccataaaaaaagaacaaaatcatgtcctctgcagcaatttggatgcag<br>ctggaggcccttatcctaagtaaattaaggcaggaacagaaagccagtagttctcatttctaagtggaaactaaacattgggtactcatggacataaaga<br>agcaacaatagacactgggcactgctagaggtgaggggtaggcagggggtcaaaattgaaaaagcaactattagataccacgctc<font color="green"><u>AATATCCAGGAAATG<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT<br>GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAA</font><font color="green"><u>AATATCCAGGAAATG</u></font>ggattatttgtaccccaacctcagcatcacgcaatatacccaggtaacaaatctgcacatgtaccccctgaa<br>tgtaaaataaaagttgaaaaaaatacaatcttaatactattactgtatgtaaaataatgagcaacaatttcctcagtatcatcaaatatccagtttatgt<br>ttatatttccaattgtctcataaatatcataatctttttttagcggtttctttaaattaggagctaaattacctattgcagtgagttgttttcaatctcc<br>tttaactggcaggtgtcctccccaactctctccctttctttctctttgcctcacactccactgccctgacctccttttctccctatctccccgtctccat<br>tctttgcaactca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr20	37771062	37771183	1000504	0	+	pAlu20-38975973; 15950; RIP_Alu_chr20_037_01	NA	NA	SINE	Alu	Ya5/8	aaatttttataccattcagcagtagaggagaaaaatatctcttaagaatgaggtgtaagaggtagacagcgctgtattgaggtggtactgccactctgac<br>agcaactgagtatatgaagtttggcaaaattcccatcccaattggggagctaccaagtcatcacacatgcatttctgttggaatcattttatttctaccc<br>taaatgataatagaacatatggatttggggatagcagagatgaaagccatttcttccttgtaagtttccactgagggattgtactcgccaaagaagtaca<br>aatgcattttagatctacaatcatttatcaattatcaaacacctatcaaaatcatagggttggctctatattatgttggaagaat<font color="green"><u>AAAAATATGACTCGA<br></u></font><font color="red">GAACCCGGGAAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATATGACTCGA</u></font>acaggcccttgaccttggtggactttaagtgagggagaaataaattatcccagatatttgcaa<br>tgctagaaagagatgcaaagctaagatgggtaaagaagaagtagtaattaacaccttgaagactatttagcagttctccaagaatataagtagaaaacat<br>acacgagagctctagggatacagaaagggcatgaagttagtgttaaacaggcctaatcctggtttctggagtctgccctttggcagagacttctgtgttc<br>cactgaattgtctgttttccttttcttccttaagaaaaaaaaaatctcaattttatttagaataacactgaccactagaagtcaacattttccaaattcc<br>tttgcattttggtgtggtcatg	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr20	52726073	52726372	1000505	0	-	pAlu20-53930983; 55626; RIP_Alu_chr20_052_01	CAGATTGGTTGCTGGCACTGAAC	GCTGAGATCCATAGACATGTACATG	SINE	Alu	Ya5	ggcagagttttatagtgaagattagaatatttgatataccaggcactgaagggaggttttctgtgctgagatccatagacatgtacatgattagcctcag<br>aggggtctgtgatcttgtagatcatcttacgatttaatgtgcacagctgaatttttccaaagagtgtgttcgagaaatatttgccaacaattcctcagtt<br>gtggagaagtgggaaatgccttcatgaaggttcaagtctaatgaggacaatggaaagtgaagagacaaaaaaaaattgggttcactagacaaagggggcc<br>atggcaagggactcccactcaatcttgagattcaaggaattaacttttgagacaaaacacaaggaatggttgggacttaaccaggt<font color="green"><u>GAAATTAGGAATCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br></font><font color="green"><u>GAAATTAGGAATCA</u></font>aaaaggttaatatctagtgacctagaagactctatctaagaacagcagaagaggatgcaagatatggtgtatgcccataacagccc<br>acctctgcagccaggacccaaactctcaagggccaactctctttgctctgagaggtcagaacaatcattttcccataagtcagagcttgacaacagtcaa<br>gataccaaataggcctacaagagcagcgtccacaaaaatgcatcactagtgttcagtgccagcaaccaatctgtccttgtgcaagttattgaggacatga<br>aaatatcacagggagacccgagctccaagcgcttgaagcagtcacattattatgcactgttcaaagccttgcagaaacaaaactgagaccattctttgcc<br>	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic
0	chr20	53896642	53896944	1000506	0	-	31590; RIP_Alu_chr20_053_01	GTCACTTCTGTCTTGGGGCTTATGG	GACTAGGAGGTCATGGGCTCTCATG	SINE	Alu	Y	ttgggtggaactctgccacgtggccacatctaactgcaagggaagctgggaaatgtagtctggccatgtgcctacagactaggaggtcatgggctctcat<br>gggcacatggcagtctaagtaatctatggtcactcttctctctgtgcgctaattgtccttaaaggctccatgtgtattttttcacagggccattgctatg<br>aacctatagacagaacccactgccctgatctggtcaactgttacttttctttggctatcagttcatgtgtcactcccccagggaacacttccctgatcgt<br>tcccccagacatacctcaccaactagactcttccttgttatatgctataataaaacctcatttcctccataccatctatcttcatt<font color="green"><u>AAAAAGAATGCCCA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AAAAAGAATGCCCA</u></font>catttatgtgatagttttattattgtctccttaaccattagaccataagccccaagacagaagtgactgttttgctcatattg<br>tattcctaagaatctaggcaatttctatagccacttaataaatatttgttatatagatatatgtgtatatatatatatctctgtgtgtgtgtgtatatac<br>atgtatgtacacatatatatatatgtatattagaatcccatcagtagtttcaagcaatgatatataaattacactcttattctgggactgctttacaaac<br>tgtcactgagtttctctggagacaattgagaagtggagttgaaaatattcctttcaacacataaacagatttctttttgtagatctctctcattatgttt<br>ctt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr20	57219307	57219515	1000507	0	+	Yb7AD42; Yb8NBC479; 2907; RIP_Alu_chr20_057_01	CATCCTGTTTCAACATCAGCA	GTTCCCAGCAGGAATCTGAG	SINE	Alu	Yb8	gccctgagcatgaggctgtgtcagctgcagcagggacacctgctcctctctccccctccacaggggacacagttcccaacgtgttccatggaagttggca<br>cccctgcctcatctgcagcttatcctgcatgctcatggtgaccctgggggcctcagtgagcagagagcccagaatgaaaagccctttcaccccttcttcc<br>cttcagcctcagggaagggtcctgcacgctcaccccatggactaatggaggagtcccagagatcctgagctccctccatgtgggggaaatcccacttcca<br>taaacatcctgtttcaacatcagcatttcattgctttcttcacacctaaatcccaagagcaaactgggggcaccaatgaatggtgaataaaac<font color="green"><u>CAAATCC<br></u></font><font color="red">CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC<br>CGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>CAAATCC</u></font>aaggagaaaaaaaaattcagaaacaaaacctgaatatagatctaagaaacaagtggctttccatagctcagattcctgctggga<br>acacagctccaccaccccatccccttacataggtaataaggccccagcaacagcctggaatggtgacaaatatctatgctttcatgtttgttatttgagc<br>atccagttgaaccaggggcctaggtccctggctcccattttcaaaggccctcctctccagcaattaggaaggacatggagaatgtccactgcagggcagc<br>tgtgagctgcaggatgtggtagaagccctagcccagagaatatcaatcactgcctgctccttattgaagtgtcagagagggaaccgggaaggctagtagg<br>gcaaaccag	UCSC	<UL><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	NA	NA	NA	intron:ZNF831:NM:178457:3/5
0	chr20	60004034	60004338	1000508	0	+	13096; RIP_Alu_chr20_060_01	NA	NA	SINE	Alu	Yb9	caagaaagtgtgcaaggccgaggaaaacagcagtcgagagaaactgaatgtgagatggcccaggtgttgaacttgacaaaaaccttataaaacagcttta<br>ataataagctcaaagaattaggggaaatataaactgtaaaaaagaactagatggaaatcttagaattgcaaaataagttaacaaaatggaaacttcaact<br>ggagatggcagaaatccatctgccaaggacctcgtagacacatcagtagacatcttccagtctggaaaacaaagagaagacagactgaagtccaggaaca<br>caggctcaaagacctgcagggcagcatcaacaggtctaacatacatgtaactggagccccagcagaagaaagtaagattgaaatgg<font color="green"><u>AAAAAAAAATTTGA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG<br>AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA<br>AAAAA</font><font color="green"><u>AAAAAAAAATTTGA</u></font>agaagtattagccaaaatgttccaaatttgatgaaagacactgacctacagatctgtgaagttcagagaacctgaaacagg<br>ctgaatatcctgagaaccacagcaaaacacaacacagacaaacctctaaactgaatatccagagaaccacagcaaaacacaacacagacaaacctctaaa<br>aaataaagaacatctcaaaacaaagattgaaagtcatgccagagacatgaagcataccacgtacagggaacaagcttaaaaattatagcaggaccagccc<br>atgctacatggtgagaccctgtctctacgaaaaaaaaagaaactacaaaattagccaggcatggtggcacgcacctgtagtcccagctactcgggaagct<br>gaggc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TAF4:NM:003185:14/15	
0	chr21	29523697	29524027	1000509	0	+	54074; pAlu21-29522172; RIP_Alu_chr21_029_01	CAGTTGTTAACCTGGAGTGCACAC	CGGGTAGCTCTTTATAGCTGTGTGAC	SINE	Alu	Yb8	cttttgtaaaaacgaaaataagacataaacaaataaattaattacaaatttgctgtgagaccaaaataccacacagcccccaaaagctgagatagtcact<br>gcagatattgaagatctgcattctaaaccacatgttttatccccaatgttcagctcaatgtattgtgcttggtagattcttaattattatttgttcagta<br>acaaatataatgatcaggtctttgcaggagtattaaattaaaatttgtctgttacactttaatggtcagttgttaacctggagtgcacacaaataatgat<br>agatcagcaaggagggtctaaaaaccacatactaggaagtccaatggaagaattaggcgtgtacagaagagaaggttaatttattaagaga<font color="green"><u>CCGGCTATT<br></u></font><font color="red">AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG<br>GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAAAAAAAGGGGG</font><font color="green"><u>CCGGCTATT</u></font>ttattatagattgtcttattctgtcccaagggaagtattctaattgatgttatagggagg<br>caggtttaaactcagtattaagaagagctttctataattaataaaagacaatgatatggacttgtattagtttgttgtcacacagctataaagagctacc<br>cgagactgggtaatttataaagaaaggagttttaattgacttacagttccacatagctggggaggcctcaggaaacttataatcatggcagaaggtaaag<br>gagaagcaagcacctccttcacaaggcagcaggagagagagagaacaaggtgggaagtgccacactttaaaccatcagatctcgtgagaactcactgtca<br>tgaaaatagcagagggaaacccgcccccatg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:C21orf109:NR:027072:3/4
0	chr21	31014759	31014992	1000510	0	-	Yb8NBC208; 10869; RIP_Alu_chr21_031_01	ATCACTAAAGAGACTGTTGGCGTTT	CCATGGAATGACATCTAGGTTGTT	SINE	Alu	Yb9	cctcctgagtagctgggactataggcatgtgccaccacattctgctaatttattttattttattttgtagagacagggtctcattatgttgcccaggcta<br>gtctggaactcatgcccttaagtaatcctcctgccttagcctcccaaagtggtgaagttacaggtgtgagccactgtgctcaggtaccaaattttagaag<br>cttttttcagattgtctaagattcaatcctcactgagcatcttaaatatagattttcaactctcatgggcaagaaaataccatatttaggttgagttgag<br>actaattttgtaattgagtcccatcaaaggtttattttcaaaatattcagtttaatctaggcaaaactgcttacccaatggttatttt<font color="green"><u>AAAAGATGACCT<br></u></font><font color="red">TCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGG<br>GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCG<br>AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATGACCT</u></font>gtttgacttaatgtggcctatttgcttgtgctgtataaaaacgccaacagtctc<br>tttagtgatttggaaacttgaacactcataagattttcatatttgaacatatactctaagacgataactttcaaaagaacttaaaagttatttctcaact<br>taaaaagttattttgttacacaaatatgttagtttattgaagaatgtcaagctggttttctttacacagttgtcctcctaaggataattaaaatgctatc<br>atggcgttccagtttgtactcctactacaatacctggcatttaggtgcaagtaaaacttacagcgcatatgtaaattgtgaatactctgaaggtgttttt<br>attttatagtgtttgatagcacattttaaaatct	UCSC	<UL><LI>Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11469855">PMID:11469855</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	357	111	NA	intergenic
0	chr21	39266187	39266498	1000511	0	+	19513; Yb8JW664; RIP_Alu_chr21_039_01	CACTGAATTGTGGCATTAGGAA	CTCTCCTGCCTCTCTACTTTGCT	SINE	Alu	Yb9	ctgactgaatctttggatgcccccgctccatccccatcttggcacattggatacacaccagtcccgtcattgagtactgtctctcttatgagacggaagg<br>caccttgagcacagagcattggcctggtcatcttcccacccctaagagtggatgcttcacaagtattagcaagataaatatctatgattttaaattccca<br>tcgtaccgccaacccatcttgtatgcatttctaaaaatgtattatcttgacattagaataccttttagggaagcacctgttgctgttttccaaaatatct<br>caatacagctgcttggggtggaaattaagaatatgaggatatggatcagtgtaaaagaaatcactgaattgtggcattaggaattatctt<font color="green"><u>AAGAATTTGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGA</u></font>gaaaggggcccggcacagtggctcatgcctgtaaacccagcatgttgaaaggcctaggtgggaggatcacttgagccc<br>agaagttcaagatcagcgtgggcaacatgacaaaaccccatttatacaaaaaatacaaaaattagctgggctcggtggtatgcacctgtggtcccagcta<br>cttgggaggatgaggtgggaggatcacgtgagccccaggagttcagggctgcagtgagccatgatcacaccactgcactccaacctgggcaacagagtga<br>gaccccatctcaaaaaatgaaaccaaacaaacaaacaaaaacagaatttgaaaaaaggaaaagagcaaagtagagaggcaggagagacaagggggcagag<br>agctgaaaaccg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	725	403	NA	intergenic
0	chr21	41324767	41325073	1000512	0	+	pAlu21-41323632; Ya5NBC243; 528; RIP_Alu_chr21_041_01	CCATGATTCGTCATTCACCA	AGGAGACCTGCCAATGAATG	SINE	Alu	Ya5	ttgcatctccctaatgattagtgatactgagcattttttcacatgattcttgcccacgttgtgtcttcttttgagaagtgtctgttcatgtcctttgccc<br>attccaaaatgagattgtttgttttctgcttgttgacatgcttgagttccttatagattctggatattggacttttgttggatgcatagtttggaaatat<br>tttctcccatttgataggttgtctgtttactcttggttaatcctcctacatcacacgcctaccttcaaaagtgttctgaattcagggcctccatgggatt<br>ctactgagcacatagacagctgcagagttgagggtcttcctttccatgattcgtcattcaccatcactctacacagttttgtcttt<font color="green"><u>AGAAAATACCTAGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAAAAAA</font><font color="green"><u>AGAAAATACCTAGA</u></font>aagctgtcattcattggcaggtctcctccgattctctttctggttgaaagagaatacattttttattctcttactttcc<br>ttataatagcaacttcagaggaagagataaaaacacatacgttccacctctcattctaaactggaagccactttctgaaggaatcaacttcccaaagaag<br>aatttcatttagttaattattcaaaagattcaactaaaataagaaaattccattcaatgacattttcttgggtatcactttgttcaaagtacagtgcttg<br>actaactcaggaatttacaagacagtaggatttggttcttgcccccagataatttatgttctgatagaaataacagacatttatcaacatgttgtaactg<br>tacattt	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11042148">PMID:11042148</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	406	86	NA	intergenic
0	chr22	16663916	16664218	1000513	0	-	19250; RIP_Alu_chr22_016_03	NA	NA	SINE	Alu	Ya5	gcgcgattttggctcactgcaagctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggtacccaccaccccac<br>ccagctaatttttgtgtttttagtagagacggggtttcaccatgttggccaggctggtctccaactcctgacttcaggtgatccgcccgcctcagcctcc<br>caaagtgctgggattacaggcctgagccaccgcgcccagcccgcatctcctgctttctttacccgcccttgctcgagtgagaagaggtagtgagctgctt<br>tctcctctgggttcccggactgcagctactagctttttggatttagaattccagcaagttccagggggaaatgaaataaat<font color="green"><u>AGAAAAAGGAAACTCAGGA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG<br>TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG<br>TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>AGAAAAAGGAAACTCAGGA</u></font>tgccttgtgaatcacacagtgccccaccactgacactcataaccctttgaaggtgggctcatcagctcatcacttccc<br>ctttcccagaccattatgctgcgtaaattcaagacttctcgggttctgcccaccacgtgggggctgctgcttgaaggggacgttccccactgcagggagt<br>ctcttgtggactttaggccctgttctcgccacgcccgtgaggacgacggcaatgccagaattaggtttcttttctgtttctgctcttgtgtcattcttag<br>agcacttagtaatattcgttaattggagggaaaatcacccttttgagatctggagcctcatatgtaaaacctggttgcccttgcccctctgtgcctgcat<br>ccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MICAL3:NM:015241:29/32	
0	chr22	31625773	31626076	1000514	0	+	pAlu22-31620226; Yb7-Yb8NBC125; 1089; RIP_Alu_chr22_031_01	AGCCAGAAACCCTGAACAAG	AAAGGCCCCAGAAGTATACCA	SINE	Alu	Yb8	taggagaagaaatccttttgtaagcaggagtgggactggggaacggaggcgttaatcaagtgagactttcatacaactgagaaaaggttaacttccccct<br>aaagaaggagcgtgtgtgcagggaatgaggggttggtccatgatggaggttatgggcccaccagtggcctctatatggctttatctagagcatttctgaa<br>ttcatccacttaaaatttaattaggaaaaagggttattctgcttaaaattaaattagcttggaaacaccacatataataaggcctggagttaaaatgctg<br>ggttcttgtcctggccctgaaactcactagccagaaaccctgaacaagtcaatttccctcttttgagccttcgttcttttacagtt<font color="green"><u>AAAACAAGGAAGTC<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG<br>TGAAACCCCGTCTCTACTAAAAATATAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAACAAGGAAGTC</u></font>agatggtatacttctggggcctttattagctaaaatattctgagagagcgtgaccttctagtactgtctcccatggaactgt<br>cctggtgaaacccagagatcagctcatgaagatggacttgaggcaagagagagctgaaatgaaattgggcttgagttgccactcagcccagcaccatctt<br>ttcagatccttgttctgaagcagcagatcctcttcatcttttcagccctgaaggaatcccttacatccgggtcactgcaaagttccgggcaaatttcctg<br>acaaacttctgttcattttttaaaacccattgtaaatgttatggtcatttgttcattcaataaacatttattgaataaatactctgtgccaggtgttctt<br>ctaa	UCSC	<UL><LI>Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16376498">PMID:16376498</a>.</LI><LI>Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15588477">PMID:15588477</a>.</LI><LI>Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16139099">PMID:16139099</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:SYN3:NM:001135774:4/14
0	chr22	35457036	35457193	1000515	0	-	20709; RIP_Alu_chr22_035_01	NA	NA	SINE	Alu	Y?	ttgaggtgtcttccagccatccctgtgaggtgtcaagaaggctgttggagaagccagtctaggatgcagaagccagctgtactggagatagaaatcaggg<br>agttggcagggcacagtggctcatgcctgtaatcccagcagtttgagaggccgaggcggtcggatcatttgaggttaggagttcaaaaccagcctggcca<br>acatggtgaaaccccatctctactaacaatacaaaaattagccgggcatggtggcgcatgcctgtagtcctactacttggagggctgaggcaggagaatc<br>acttgaacccgggaggcagaggtggcagtgacctgagattgcgccattgcactccagtttgggagacaagaatgaaactctgtc<font color="green"><u>AAAAAAACAAAAAACA<br></u></font><font color="red">CACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAG<br>CCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAAAAAAAATAA</font><font color="green"><u>AAAAAAACAAAAAACA</u></font>aacaaaaaaaacccacaaacaaacaa<br>aaaaacagaaatctgggagttattgatgtgtagccagcatgcgtgaggatgttcccatttgtccccaaggatctagacatgacacagggaggaggaggtg<br>aaggccctgtaatataatagagtcaggaatattttgtaaagagcaccatcaaagccatattaataggaggactgtgtgtgtttctcatgtcgatcaagct<br>gtgctgtcttggaaaatcaaatactttcgtgtttaccttgaagtaaatctaaagaaaccagccagtgccactgctgaagttgagacaccaagttgaaccc<br>aagcaccttccatgttttcccagcaacgtccctcggcctcaatttactcgtccataaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr22	40470438	40470746	1000516	0	-	14672; RIP_Alu_chr22_040_01	NA	NA	SINE	Alu	Ya5	cagccaaagtcctctttgccatacagcagagtatcagaaatcaagtgttgcctctagaacttcacccattgtctgaatcccttccacccctaccttccat<br>gctattacttcatacctcagagggcccctcacctgcaggcacttctaaatccctccagagtgctgaggaggaactttcccctttgaagaatggccttctc<br>tgaatctctactggaggcatggccctgaggtgggaaggagagacaggaacctagtgatcaagtatatgctgtgtctcagtctatgcttggatgactgtag<br>acctcttcttctcacactgcagtctgacattcccatacacctaactttccaagagatcttggctatatccttgcaaatagctccttta<font color="green"><u>AAAAAAATCATA<br></u></font><font color="red">GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT<br>GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGAGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT<br>GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAAAATCATA</u></font>gcaaagctgggcatggtggctcacgcttgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggag<br>atcgtagccatcctggctaacatagtgaaaccccgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggcacctgtagtcccagctact<br>agggaggctgaggcaggagaattgcttgaaccccggaggcgaaggttgcagtgagccaaaatcgcaccactgcactccagcctgggcaacagagcaagac<br>tccgtctcagaataaaaaaaaatggtagcaggggcccagcgcagtggatcatgcctgtaatcccagaactttaggaggccgaggtggaggtcaggagttc<br>gagaccagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:MEI1:NM:152513:12/31	
0	chr2	5405234	5405486	1000517	0	-	238888; RIP_Alu_chr2_005_01	NA	NA	SINE	Alu	Ya4	tgattctccatggccttgacaggtgcatggcctctgccctgggcagtgtggagtcagttcccttccctcactctaggattcccctacttttccaatcact<br>tccaatcctgcctttcaggtgtttagcagtgtacagagggctgggtgggatggcagaacccgggcactcctgttgacgatgcatccttcacttcctccgt<br>ctccttccctgtctcctccttttccattactcaagccagctgacctcagaacttcagaaaatgaatgtaaatgtatattgttctcaatatttctactttt<br>tctgttgtggaaacttcctttgtatcataatattctttttctttgattctccaaatgtagatccttactattttaaaagaagcatt<font color="green"><u>AGAAATTCAGAAGA<br></u></font><font color="red">CACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTA<br>GTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCG<br>ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAATTCAGAAGA</u></font>aactaagacttttttgtttagcaagatttgact<br>ttcagcctattgtccactatagaattagtagatcaaatttaatatacaaagttgcataataacttctttgctctggaatgtttctgtccttttctagtga<br>cacagatgtcctgatccgtttgtctggggaactgtagtgtaacatgattttggaaaaaacaggtcatataacatttaaatatcaatatatttttatgtta<br>tttatatagtatgtatatattatatataatacatatgaaataagtataaacatatattatatatatttatctttttctatctcaaaattttaaattcaat<br>gttattttaggataatatatatgtttatatattatatatcttaggtatttaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	21426299	21426588	1000518	0	+	Yc1RG72; 665; RIP_Alu_chr2_021_01	GTAATCTATGGAGGGGCCATTT	TTTGGGGAACTTAACCTGTTAGC	SINE	Alu	Yc1	ctacaaaacggctgctgttttccctctaccctctgtccaaaatttcctgagaatctcccttgtgcctattctatccagacatgtacaataaagggaactc<br>tgggaagtgtagttcagcctacccaagtagatacatcacaaagccattttgccttcttttttttctaagcagcagagttcttattctgataacattcact<br>gactctgctgtaggactagatataccagcacaaaagtaggctggtttgtgagagatcattcagtcaaggcattgtacataattaatcttagtagtttgag<br>ggcagaaagagtcagtcatcatttgcacaaatgaagaccttgtaatctatggaggggccatttcaattgctattctaatcacagt<font color="green"><u>AAGAATAAAGCAGAA<br></u></font><font color="red">GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA<br>AAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT<br>GCAGTGAGCCGAGATCGCGCCACGGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATAAAG<br>CAGAA</u></font>attatgtgacttgtgccatttgatttggctaacaggttaagttccccaaatcagggcacataaccacttaattttttccatagaaaagtgaatgg<br>acatttttgatgacttggatacctgcttttgaatcaaaacacatagattttaagtatttgtctcaaatattctttcctcagaagtcattgaccatgcctt<br>ttcttgaagcctagttatacagaactaaagaattttcataggcataaacaaggaagaatttaaattaatgtgtaaaattgggtatcttaacttaggtact<br>ccactgcagtatgtaaatatcaaggtagcaaatatataactggatagtgttaggtatgagactgcaaagcaaaatgatgtatgtgctact	UCSC	<UL><LI>Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16093706">PMID:16093706</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	61	414	109	NA	intergenic
0	chr2	34887959	34888186	1000519	0	-	13032; RIP_Alu_chr2_034_01	NA	NA	SINE	Alu	Ya5a2	aagagcttcaaatggcctaacaacatgttttcctcctgactttgctcccatggatcacgtctcttgtcaagcaaccttccttatcatgggaccagcaccg<br>tgcttgcttatccctgaggagcaggtttcaattccttcccagcctgcagagctattcaaacaagctaatcacatccttccctgggattcaggggtcactt<br>tgccacagcttctacttgtccactgttcctaaatgcaatatccatgtggttcttcatggcatgcactgcccttccccccagactgtgagtggatgtgatt<br>aataattgctatctcatcttcctagtgtctagtgtagtgtgtgtgccattctctcatagccagagggtgtgaatccctctctcatc<font color="green"><u>AAAAGGGTAAGTTA<br></u></font><font color="red">TCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGG<br>GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCC<br>GTCTCAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGGGTAAGTTA</u></font>ttagaggtgattaaaacaatggacaattttttttttttttgagactgagtttcgctct<br>tgttatccaggctggagtgcactggcacaatctcagctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgg<br>gattacaggcatgtgccaccacgcccagctaatttttgtatttttagttgagacagggtttcaccatattggccaggctggtctcaaactcctgacctca<br>ggtgatcttcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcacctggcaacaatgaataattttttaatggagaaaaaaaaagg<br>aataaaactacgataatgcaagtaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	38704938	38705232	1000520	0	-	Yd6JX90; 20509; RIP_Alu_chr2_038_02	TATTTGAAAACTGACCAGCCAAT	CATCATCCAGGAATAAGACCAAA	SINE	Alu	Yd8	ccgaggacaagaagtaatttggagatagccagttaaacgtttaccagcacacactgaatagaggcatgtgctgggacaaagagccgtgtacttagagact<br>tcaggatgaaaatgcaaatggacaaaaccatcaactccatcagtgggggcagcagaataccatgagtggcagagaaaggaacattttcattcaggggtca<br>tcatccaggaataagaccaaactagtccttccacagcagagaccagcaaagatcctggataccaactggatctgaagcccctccccctactgccccagaa<br>tgctgcaatccagtatcactgagctgccatcctgaggatgccactggacatctgtccccatgactcagtcatccagaagactgttt<font color="green"><u>AAAAGCCGAGACTA<br></u></font><font color="red">GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC<br>TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG<br>CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>CCGAGACTA</u></font>tgagacttttgattggctggtcagttttcaaatagttggaatctagaatccagttctcatcttagattcacttttccaccttgacttttac<br>tcccccttagcgaggcacacattgtcttctggtgctcacaggccatagcagttaaagtggtagacatctatttgtttctgtctttttctccatagtgacc<br>agtcctgatggactattcacaatcgctcctccttggcttatcaggcctcatgcaaatcacatgctgtcccaaatgaccagtgaactgcctccgaaggaac<br>caaagtgacaggggctgtggagctgaggacctctctctaatccctccaggctgaaaaattaatggcccactttttctgatggtaaaataataatt	UCSC	<UL><LI>Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15008405">PMID:15008405</a>.</LI><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	545	236	NA	intergenic
0	chr2	40831655	40831975	1000521	0	-	9004; RIP_Alu_chr2_040_01	NA	NA	SINE	Alu	Yb8	aggatactgtatttggaatcaaaatcctgggtgagaatttttgctttaccactaataataaaacctaagggagtgattgaaccaattcagcctgtatttc<br>ctatctgtaagagggaaaaataatgccttccctatgttactttcacagttgttgggtagatgtaacttagggccatggaagagccctaactctaaatcag<br>aatatctaagttccattcctgactctatcactgatgcccttcataaccttaattacaacacttttctgatcttttcctcatttggcttacttctaaatga<br>aaggctaagtcacatgtgtcttattgatattagtactttctagttagattctaaagtaatttcaaacttacagaaataatgtgaatagc<font color="green"><u>AAAAATAATTC<br></u></font><font color="red">CCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA<br>GGCGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT<br>GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCGGGGTGACAGAGCGAGACTCCGTCTCAAAAAAA<br>AAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATAATTC</u></font>tcatactttatgcagattcaccattttttaacattttgtcacaattgttttatcattcttccttgcat<br>atatatatacacacacattgtgatatgtatatatgatttacatagaaatatatatttgagaacattacatatatcatttccatttatacttcattatgta<br>tttcctaaggtataaaacttacactaacttcactgaagtattcaggtttttaatattttaactataagcaacacatgtgaattatactgtgaaatctaaa<br>gcactactaaaattataaattgtttttcttaagaaactagcccaaaaatattttataaaagagctagctatttttcaaataaaagattgaacctacattt<br>ttatagatttggaaacattgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	44637106	44637412	1000522	0	-	Yb8JW684; 3922; RIP_Alu_chr2_044_01	GGTAGCATCTTCATTGCAAAGTG	CCACTGTGCCTAGCGGATTA	SINE	Alu	Yb8	agtggacatttctctgacaaataatacttggaaaccacattatcattaatgatgaatgaatcctatgtctagaaaagttaataaacaaggcatttcctca<br>gtgaaaagagttaaagcaaaccacataggtgaaagtaaaaaagataaaacttttgcatgctgttgcattccagcagggagtgggtagttcctgtgcattt<br>tctccctgaaataaacttacatcatcctcacttgtatcattttgtaaattttttttgtagagacggggtctcattatcttgccaggctggtctcaaattt<br>ctgggttcaagggatcctcctgcttcggcctcccaaagtgctaggattacaggcgtgagccactgtgcctag