0 chr13 31851500 31851501 1000001 0 + BRCA2; RIP_Alu_chr13_031_01 GTGCACTAACAAGACAGCAA TAGATTTTGAAGTTGCAAGATG SINE Alu Yc1 ttacctaccccatggactgttgtgaagattaaatgaattagtacatttactacacatagatctatttctcaaaataatgagcattcagatattagccatc
tgtaatgtagttggtgatgattatgattattagagtacatttataattggaggatcatttttgccgtagggaaatagaattattaatagtttgaggcacc
tgagaatattatgtgagaaactgattacattaaccacacccttaagatgagctctaattttgttgtatttgtcctgtttaaagccatctagttacaatag
atggaacttttttgttctgattgctttttattccaatatcttaaatggtcacagggttatttcagtgaagagcagttaagagccttgaataaTCACAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCACAGGCaaatgttgaatgataagaaacaagctcagatccagttggaaattagg
aaggccatggaatctgctgaacaaaaggaacaaggtttatcaagggatgtcacaaccgtgtggaagttgcgtattgtaagctattcaaaaaaagaaaaag
attcaggtaagtatgtaaatgctttgtttttatcagttttattaacttaaaaaatgaccttactaacaaaatgattataaatccagataaagtataaagt
tagtttatatcagagaagcaaaatccactactaatgcccacaaagagataatataaaagaggatctgtatttattttgaaacaaacatttaaatgataat
cacttcttccattgcatctttctcatctaaatgttgaatgataag Other
- Miki Y, Katagiri T, Kasumi F, Yoshimoto T, Nakamura Y. Mutation analysis in the BRCA2 gene in primary breast cancers. Nat Genet. 1996 Jun;13(2):245-7. PMID:8640237.
E:Insertion-specific detection:PCR;E:Insertion-specific detection:PCR-SSCP NA 60 NA NA Breast Cancer exon:CDS:BRCA2:NM_000059:22/27
0 chr6 31574207 31574522 1000002 0 - AluyMICB; RIP_Alu_chr6_031_01 CTCAGCCCTGCTTTCCCATCT GCCTTCCAATGCCATTCACAG SINE Alu Yb8 tgcccggagcctgcagactccaacccctcagcttgagagtcaggaccccccacagtccccacagcagcaagaagcaccacctccgggtcccaagaaagga
gggccccaactccaggagctgcggcccaggagctgagaacacatcggctccgggagaggacaggacttcagggacctgagatccgcccccagcaccgggg
gaagtggctgcctcagcggccgcgctggaacggccttccaatgccattcacaggagcagcccgggaacccaggggcctcagaaggactggtttgtccgaa
aagtgagaggagacggaggagaggcgaggagagcaagtgcaggagagaccagaaaatgcgggtgatgcgcgatcccgaggaggactgAAAGGAGACAGGA
GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACTAACACGG
TGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGCGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTACAGCCTAGGCGACAGAGACTCCGTCTCAGAAAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGGAGACAGGAgatgggaaagcagggctgaggtgtggcgggaacaggcggcgtccagctccctgcactccagacagcacacc
tgagccccgccctgaccgcacagcgctcgcggcaacccacccggacccccggaaacgccccgccgctcccgctccgccggggaccgccaggaaccccact
caccagcggcggctgccgggggtgcaaaagggaaggcgacggccagaaacagcaggacccggcccagccccatggcccctacgtcgccaccttctcagct
gctcagcagtggccaactgaatgaaacccgtgagaagaccccgtcgaaatttagtcacctgcgccccgctcagcgaccgcttatccagtgaaaactgagg
cccggaacttagggcc UCSC - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8. PMID:15592666.
- Alu polymorphism within the MICB gene and association with HLA-B alleles. Erratum in: Immunogenetics 2002 Aug;54(5):365. Immunogenetics. 2002 Feb;53(10-11):975-9. Epub 2002 Jan 26. PMID:11862397.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72. PMID:15996165.
E:Insertion-specific detection:PCR NA 67 665 336 MHC related intron:MICB:NM:005931:1/6
0 chr6 31079570 31079571 1000003 0 + AluyTF; RIP_Alu_chr6_031_02 NA NA SINE Alu NA tgcttcagcctcccgagtagctgggattacaggtgcgtgccaccacacccagctaatttgtgtgtgtgtgtgtatttttagtagagatggggtttcacaa
tgttggccaggctggtctcgaactcctgacctcaggtgatccacccaccttggactcccaaagtgctgggattacaggcatgagccactgcacccggcct
aaaaccactggtttatatactttattttattcttattatttttttaaatttgagatggaatctcactctgtcaccgaggctggagtgcagtggcgcaatc
tcggctcactgcaacctctgcttcctaggtttaagagattctcctccctcagcctcccaagtagctgggattataggcgagtgccaccaTGCCTGGCTAA
NNNNNNNNNNTGCCTGGCTAAtttttgtatttttagtagagatggggtttcaccactgttgaccaggctagtcttgaactcctaacctcaggtgatccac
ccatctcagcctcccaaagtgctgggattagaggcatgacccaccttgcccagccaggtttatatactttaaacaggtgaactatatggtatgtaaatta
tagctcaatacagctcttaaatttttaccaggcacattatgtaaataaaaatttttatttcctggccggacatggtggctcacacctgtgatcccagcat
tctgggaggctgaggcaggcagatcacttgaggccaggagtttgagaccagcctggccaacatggcaaaaccctgtctctactaaaaatacaaaaattag
ccatgcgcgg Other - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8. PMID:15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72. PMID:15996165.
- Dunn DS, Inoko H, Kulski JK. Dimorphic Alu element located between the TFIIH and CDSN genes within the majorhistocompatibility complex. Electrophoresis. 2003 Aug;24(16):2740-8. PMID:12929169.
E:Insertion-specific detection:PCR NA 62 710 426 MHC related intergenic
0 chr6 29788448 29788449 1000004 0 - AluyHF; RIP_Alu_chr6_029_01 GCCTCATGGCCTGAATCTGCCAGTGTCCTT GTAACTGACCTGCCCTCTATAGTATAGTCT SINE Alu NA cctttcctcagcaggcctaattgaagcaagtcccctcctatttctcctagagtgtaggtcaaagcaatagatgtgggatgtggtgttgtcagaattcaaa
gaggctcaccaggcagtgtgcttccttccttgtagtgaggatgcaagatgcaacactttgtcttttactgtggaggagaaactcctggatgtcctcaacc
actggatgaataaaacttcaccacagtggccactcctgaatctctgtgtggtttatcttccatctgctggagagcacgtgttttgccaaggccttcagca
tacttcccatctcctactcatccatcctagtcaacatgatgttgttgatgaaataagctgatttaccattctataggatgccagGTTCTTCAGATCTCTT
NNNNNNNNNNGTTCTTCAGATCTCTTaagactatactatagagggcaggtcagttacaataaccctgaggccaattatcaataaatgtgttgtggatccc
acatgaatcacttcatgtatagtttttctcattggaatggaaaggaatgcactcaccaaatccacagctgcacactttgtgcctgaggccttatcaatct
gctctaccagtgatatccagccagcatggcagctgcaattatgactcctactttttcaagtctgaagtaatctcattcattctttaggccccatcaggct
tccttggggacagattgctggattacgtgaagataacaggcaactccaacagcacccctcatccttcagctctctaatggtggtgctacacctaaaatac
ctacagtacc Other - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8. PMID:15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72. PMID:15996165.
- Dunn DS, Naruse T, Inoko H, Kulski JK. The association between HLA-A alleles and young Alu dimorphisms near the HLA-J,-H, and -F genes in workshop cell lines and Japanese and Australian populations. J Mol Evol. 2002 Dec;55(6):718-26. PMID:12486530.
E:Insertion-specific detection:PCR NA 68 605 445 MHC related intergenic
0 chr6 29926852 29926853 1000005 0 + AluyHG;1104685373306; RIP_Alu_chr6_029_02 CAGGACAACCAGTAAAGATGCTGG;NA GCTTCAGTTAACATGCAAGTTTATGCC;NA SINE Alu Yb8 acaaaaagaaagagaacaagtaatcttaactattgattccaccatcgtgcagtgcaatagtcaatggctgcaactgaaaaatcaagcaatgttaataaag
aaatggtgctttggtgcttagatatgtgaaagtaaagtcaaaagaatcagctgaaacttgaaagtggttgctccctagaaaggcagaaatagagaagaga
ggactctccctagaaaggcagagaagactctcatttttctcagaaagtcctgcacaaatatttactctttccattatgtgcaattgtaacttcgaataaa
ataaaaacaaaagcttcagttaacatgcaagtttatgcctaatgacaactttgtttaacaatgataaagggctaaccaaaatatAAAAACACTTAAACAT
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA
GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACACTTAAACATaaaacagcatgtataaatgtgtatgtgacatcaaccctgaatacaaacttgaaagaatatgtctataaacaactctgg
atagatagcccatgaatgaattccccactccagcatctttactggttgtcctgtgagcctaggcagggaggggaccaggacctgactagggtccctaata
ctcttgcttccaggcaagtcctgcatgcactcctgctgcaccaagggctcccatccctgccttggtctgtttcataggtgctcccctaactctctgccac
cactgccttacctgggtggagctgaggccgccctgaccaagaagagcaccagccatctatgtgccccaaaaccagaaagtcaaaagaaaccttgcaacag
ggtcag Other;Venter - Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8. PMID:15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72. PMID:15996165.
- Kulski JK, Martinez P, Longman-Jacobsen N, Wang W, Williamson J, Dawkins RL,Shiina T, Naruse T, Inoko H. The association between HLA-A alleles and an Alu dimorphism near HLA-G. J Mol Evol. 2001 Aug;53(2):114-23. PMID:11479682.
E:Insertion-specific detection:PCR NA;NA 60;NA 540;NA 218;NA MHC related;NA intergenic
0 chrY 15584037 15584336 1000006 0 - Ya5NBC219; RIP_Alu_chrY_015_01 CCTGGCAACCACCATTCTAC AAACCTGGAGGGCATTCTTT SINE Alu Ya5 aatagaggtataaagggcaaaaaagtttgggaagtgtttattatgtgacctccatgacagatgtatggagtttccctcctttttcttttttctttttgta
tgtacttggtactatttataataaaacagtttatataaaaatattaaaataacaatgaccttctattgtgtatatatatacaacattttctttatccttc
atctgttgataaatgcaggttgattccatgtctttaccattgtgaataatgctatcattcagccttaaagaaggaatcctgtcattcgcaacaacatggg
taaacctggagggcattcttttaagtgaaataagccagataagtaaagacaaatattgcatgaacttacttatatgtgaaggctAAAAAAGTTCAATGCA
GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCG
TCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAGTTCAATGCAtagaagtagagagtagaatggtggttgccaggggctgggagagggagtggattgggagagggggacatgttgctcaaagcatac
aaagtttaagttacagaagcggaataacttttggtgatccactgcacagtattgtgacaatggtgaataatgatgcattgtgtatttcaaaattgttaaa
agagattataaacattcttaccactgggacataagtatataaagtgatggaaatgctaattgtcttgattcaatcattccaaagtgtatacacatatcat
atcatcacattacacccaataaatgtatatgttttgtttttaccaattaaaaatgaagcaatataaaataagatttaaaaataccaacaacaatattgtt
UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 58 445 129 NA intergenic
0 chr7 107554242 107554548 1000007 0 - Yb8NBC7; RIP_Alu_chr7_107_01 AGGTTCATCCATGTTGTAGG CTTAGAAGGGAATCCAGGAG SINE Alu Yb8 gggccttaaccccagatattgtggtgtaattggtatggaatgtgacccgggaagcaggattcaaaaaaaaaaaaaaaacacaaaaaaaaaaaccctggtg
attttaatgtgcagtaaagtttggaaagcactgggttatgcccttctcttagaagggaatccaggagcagagcaagtgtgaggggcaaattaatccgttt
taggtattggcaagccatcagtggttctcaaccctggctacatctcagaatcccctagggagtgttttatacacattgacacctgggtcccaccccagag
attctgccttaattagtttgaggtgggcctgagcactggtagtttaatatctcctcaggtgcatacaatggtatattattcagccttAAAAAAGAAAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAGAAAGAAattctgacacatcctacaacatggatgaacctttaggacattatgctacgtgaaataggccagtcacaaaaaagacaaat
attgtgcgattctacatatgttagatacttagagtagtcaaatccatagagacagaaagtagaacggtggctgccaggggctcggggagacatgaagact
tcttgtttaatggatacaaagtttcaactttgcaagatgaaaagtgttctggagatcggttgcacacaatgtaaatgtaattaacactactgaagtgtac
aggtaaaaatgattaagatggtcaattttatgtaggtgtatttctaccacaattaaaaataaatatttcaaaaaggaagtcattaaaaatatcttctcaa
gtgattc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 605 285 NA intron:LAMB4:NM:007356:1/34
0 chr11 24749533 24749534 1000008 0 - Ya5-MLS18; RIP_Alu_chr11_024_01 CTATGATGTGCTATGGAAGGTAGGT CCTAGTCCTCATAAATTAGTAACCTG SINE Alu Ya5 atgagacttattcactactgggagaacagtacggggaaaactgcccccatgattcaattatctccacctggcccccaccctttgacacgtggggattatt
acaaattaaggtgagatttgggtagggacacagccaaaccatgtcagtaattaagcttttatctccaaatttggaggtagtgtatttttcttaattcatg
taattcattagtactagtaagaacagacttgaatatggtcttaatatattctcaatatatgcaaagtcctggccctgtgttgtctttgtgaaaaatgtga
actatgatgtgctatggaaggtaggtttctaacttcaaggtatttgcatcatgttaagaaaataattctgagaaatgcaaagttaaaAATCACATGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATCACATGAATAgatacgatgccatgtatatacataagacactataacatacatgcacacactattgagtactccatcattggtactca
caacttgtttctcacttattcaatagccttcaatgatgacctactgtctactaaagctggttatcatggactataactctttattaagaaaggttgcctt
taatacacaggttactaatttatgaggactaggttctgcaatgtgaaagctttctatagtatcaaatctatatttcccatgaaaaattaaagcagacaaa
taaaaataaacaaaatctgaaaattcattgcggctctaggtcagatatgacttaggctttactattcagacatgatctgtgcaatatgtggatacaggaa
tttgttactt Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 62 631 309 NA intron:LUZP2:NM:001009909:5/12
0 chr1 179124189 179124190 1000009 0 + Ya5-MLS09; RIP_Alu_chr1_177_01 AGATGTTGGACGTTGGCAGTAAG TAATCAACTCTGTCCCACATTACCA SINE Alu Ya5 cgttggcagtaagccgcagcaaggcagttaggaaagtacgtgagcctgatgacgcgaaggtgatgcctccatctgtccgcttagtggttattaaattgct
gggaaagacctgcctttattttcctatcatcttttccccattactttgcattattcaggaaataattatttattcccaaatgcagttttctaagcagtga
ccacaaaaatttcttattctaaggaaaataattaagaaaataaccctatctgtggcattgttttaaaatgtgggatacaaatctggtaagcagatttcag
gtcattattgttttcttttaatggtttacatgaaattttcctctcaaaaaacaagtacctcttactgtataacatttgagtttttaaaattgagatagca
nnnnnGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA
AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNNnnnn
ntctgagagaaaaaaagaaagttgaatttgtagctctctcaactacaaaatcaccacacttttctcaaatctaataggaattcagtgtcattacagatac
ggtctctagtgaccaggtgaagacaattgaagctttggtagaacttctgcaaaagttaggtaaagaagaataaatccaatttatcagctttgttcatatt
ctttttctgagtgatctaaatttttcttgcttgtgatcattagctaagacaaggagtgttaaaggttttctaaatgcaaacacatacgtttctgcatttc
agaagtcagtcttgatagtaaatcctacaaactctcaactttctgcattgtattttaagtctatacaatgttagagcacatggtaatgtgggacagagtt
g Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization incomplete repeat sequence TSD unavailable 57 1134 813 NA exon:3UTR:XPR1:NM_004736
0 chr5 77084116 77084437 1000010 0 - Yb8NBC489; RIP_Alu_chr5_077_01 CACAAGGATGTGGATTTTGCT TGCCTCAGCCTCCAAAGTAG SINE Alu Yb8 catgactttggtaatctttggtaaggttaatttggtaaatttgatctcaaaattctcttcagtagtttaaaatcttaaggtcatgttttgttaaattaaa
acctcatttttttttctcccccactgggaatttgggttcttaggagttaggtagcaggagtgtagaacatgttttcagtgaagtttataaaacacaagga
tgtggattttgctaaagaaaatgtaatttttttttaagagttgctttaaaataaagaaaaaattaggccgggtgcggtggctcatacctgtaatccccgc
actttgagaggctgaggtggacagattaacttgaagtcagtagtttgagactagcctggccagcatggtgaaactccgtctctattAAAAATAAGCCGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAGAAAA
ACAAAACAAAACAAAACAAAACAAAAATAAGCCGGAcatggtggcatgtgcctgtaatcccagctactttggaggctgaggcagtaggatcatttgaacc
tgggaggcggaggttgcagtgagcggagatcagataaaactaaatggataaaaagaaaaaactaagccagaaaggaaaatcggaaggaaggaaggaaaaa
attatacagataaacctaaatggataaaaagaaaaaactaaacaaaagttacctctgagacctgtggttacagagaagatagttaatgtgggggaagggt
aaaaccaagtaactattaaaccatatggtataatgtaaacaaattgttccatttcgtaggctggtatcatcagcttcctgagaaacctttactataatgg
attgtaaaaataactactttaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 62 591 255 NA intron:TBCA:NM:004607:1/4
0 chr17 6363100 6363414 1000011 0 + Yb7AD84; RIP_Alu_chr17_006_01 ATCCAGCCTTGTTTACAAAT GAGTAAATGCTGGCAAAAAT SINE Alu Yb7 tagaactgattaataaaagtaagagctatttctttgaaaagaccatcgaaataggtaagcctttggcaaaacttactaagaatgagagagaaagagaaag
atggagggatggggaaaaacacaaatgaacaatgaggggaatgagaaagaagtcataactttcggaagttaattgttttcaacttgatgaagggcatttc
tggaatcctagggcgagggccatgtttgttggtaaaacattggaacgtttccatcacagcactacagtcaggatccaaccagaaagcccgctaccgcttg
tcactctgcattgacctggagatcccatgcaatgcagtttaaaaggaaaaataagaaaggagagtaaatgctggcaaaaatataactgttaagatttgta
GGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCGTCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAttagctgagcgtggtggcgggcagctgtagtcccagctactgggggactgaggcaggagaatgacgtgaacctgggaggcggggc
ttgcagtgagccgagatagcgccactgcactccagcctgggcgacagagtgagactccgtctcagaaaaaaaaaaaaaagatttgtaaacaaggctggat
gcagtggctcacacctgtaatcctagcactttgggaggccaagtcgggcagatcacttgaggtcaggagttcgacaccagcctggccaacatggtgaaac
cccatctctactaaaaatataaaaagtagccaggcatggtggcgggcgcctgtaatcctggctattcgggaggctgaggtaggagaatcacttgaaccca
ggaggcagaggttgc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 NA NA NA intron:PITPNM3:NM:031220:3/20
0 chr17 14358668 14358669 1000012 0 - Yb7AD3; RIP_Alu_chr17_014_01 AAGAAAAACAACCACCTTTG TGTATTCAAGGGCAAGAAAT SINE Alu Yb7 aaactcccatcaatcactgtgaaacacagtccagaatgaagaaacaacttaaaaacaggtgtgaacctagcaaccatctcaaggctgaagcacaggcaat
tttgcaacacctccctatccccaatccagaatgtctttttaatccggtttacaggctggaattctactaaagacgaactcacagtcaaaaattacaaaac
acggaagaaacactccgtcctaaaacttagtcagtagatgagaaaccaaaccataatacacccaaggaagtagaataaatctaaacagaaaattaaatca
atatcttaacgtttgttaaaagaaagataaaatgaagaagtggactttgtattcaagggcaagaaattatcatttgaaaaatagttttAAAAGAAACAAG
TATTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAGtagaaatcttgc
aggtaaaaaaatagtaaatataatttaaagctcaattgagttttatctaatataatataatgtccatgaaggcaaaggtggttgtttttctttttgtctg
ctttgtttattgtttaaaccctaacacttagaacagtacctgatacataatttgcaatcaatatatgtatttttaatggataaataaattagtgggttaa
atggtagattggcagagaaaaattagtgagttagaaaatagaactaaataaaccacacagaaaacataccaagagacaaaaacattaaagaaagaaagaa
agttaagaggcctggacaagagaaagcaatactgtatcacaacattcatctaataaggattccagaataacaaagt Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 NA NA NA intergenic
0 chr9 41833169 41833170 1000013 0 + 52556; RIP_Alu_chr9_041_01 CACAGGCTCCTCACATTCAGCATG GGGATGCTGAGGCAGGAGAATCG SINE Alu Ya5 tgttttggggttccaaatagaaagcatcttgaataacgtagattaaataacagtaaatgcaaatgcagacaccaaacatatcctagaggaatcttggaga
actttagtcttgctgctttttatttttacatctcatcagcagtactgacgtttcatcaggatcaatggagaattaacaatggagttaatattttttccct
ttattagtttggggaaaaggtagatctcataatctggtgtactccttttggaagcttttcatattatcctatcctttatcacaggctcctcacattcagc
atgtcctaaaccaaatattttttctcctacccattgactcctccccctatgattctcatcattatcaatggaatttgacttAGAAATCTATTCCTTTCTC
NNNNNNNNNNAGAAATCTATTCCTTTCTCttctccttccctatagtcaatcattaaatcttgtagatattatctcctatcactgatcatttgatataact
caccaagtttcactaataataatcaaagtggtaatacatttgacaaactccaaaaaaagataatttttttctttttctttttatatggggtctcgctcta
tctctcagtctggagtgcaatggcatgatcttggctcattgcaacttctgcctctggggttcaagcgattctcctgactcagcatcccaagcagctggga
ctacaggcatgcgccatcacgcccggctaatgtttttcgtacttttactagagacagggtttcactatattggctaggctggtctcaaattcctgacctc
aagcaatctg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr5 174693412 174693413 1000014 0 + 2684;1104685439578; RIP_Alu_chr5_174_01 CAGCGGGCAGAGGTTGCAATGAGC;NA CTCAAGAGATTCTGGTTCAGAAGTAC;NA SINE Alu Y ggattttcagattcagctcgtctaagatggggggaaaggggccaggcatggtggttcacgcctgtaatcccagcactttgggaggccaaggcgggtgaat
cacctgaggtgaggatttcgagacctgcctggtcaacatggcaaaaccccgtctctactaaaaatataaaaattagccaggtgtgggggcatgcgcctgt
agtcccagctacttgggaggctgaggcaggagaactgcttgaacccagcgggcagaggttgcaatgagctgaggtggagccacttcactccagactggca
gaaaaagtgagactccgtctcaaaatgaataaataaataaatagataaataaataaaatggggggaaaggggagtgaacttgttAAAAATGCCAATTTCT
NNNNNNNNNNAAAAATGCCAATTTCTgagtccaaatctggtacttctgaaccagaatctcttgaggtgggtccagtatctgcatcactaaaaaagctcct
caaatgcattttatgaacagattattacacacaaccccgccctccagagctcatggtccagcactggtagcagacaagggagcaaggaccatgcccatgg
atatggccatgacaggacagcaatgagaacctatccccagggccagcccaggccagagccaggaaggacctccaagaggaagtgatcttaagcggagcct
gaacagggataggcaccaaccaggcagagtgatgagagagtgtctgccatctgccaggggcagaaggagatgtggtacatttggggaaaggaaaagaact
ctgagagtcc Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr1 120411631 120411632 1000015 0 + Ya5ACA707; RIP_Alu_chr1_120_01 TCTCTTCACCTATGAAGCAGGAC CAGAGGTGGAGGGCATAGTT SINE Alu Ya5 attggccacaagccaaacacaggaacactcaaaagtttagaagggtgtgctgcaactggtaccttagcaaaacacaataataaattaagaggattcaaga
agccttcactgtagactctaagaagatttaagatttgtaccgagaaacggcttctaaatctcttctactgcattagtttagcatctaaagaacacctgtc
taaaaatcaaaatatctaaatcctatcctttgagtcaacttgactaacactcaacttgactacctaaaagctagctaataatcgcagcacctcagcagag
cagaggtggagggcatagttttatgcactgagatcctataataaaagaagccctatgtgtcagagtaatcccatttctgatatcatattatttAATACTT
NNNNNNNNNNAATACTTaatttttcaaatcactttacaattatatttattattccctacaattctctaaagcaggttattcctttagtcctgcttcatag
gtgaggagactacatatcatgaagattaagttatttaccaaaacaagttaatgatagaccaaggattattaccctcagactgtctcattgatcatactcc
tctctatcctaaagctacacttaaagctttcactcaaagaaaaaggaaaagcaaaaacaccatcatatatgctctttattaaatgcttcagaaacaacgg
ctctgcttcatcactacaaagcctcctggtccacttctgaaattcttagtgacctagacgtgtacgaaatttgaactttccaagaagtatctagttggtg
ctgaacaacc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 500 189 NA intron:NOTCH2:NM:024408:1/34
0 chr7 103643686 103643988 1000016 0 - Ya5ACA1598; RIP_Alu_chr7_103_01 CCCAGCTGGTTTTTCTAAATG AATAGGCGAGAGGGAATGGT SINE Alu Ya5 cccacttgggtcatttcttatcccataaagataaaactaaatctataaacctgctccttatttttccatctggcttttcatctgtattccttatttttta
tttcactactggcaaaacctaaaatcacctatgtcagaaacctaaatgctagtctctatgactcctccctccatctcttacaaacagctactgagttcta
taaaatatacttccaaatttctctcagacttagcccattctcagtatggggtagtaaaaagattaagggctttaggattaaccagatctaagttcaagta
attacgaactataaacctttggataaattacctaacccagctggtttttctaaatgtgaaacaagaatggtatctctattataatATTGTTAAAATTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGATATCGAGACCATCCCGGCTAAAACGG
AGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTATAGTGGCGGGCGCCTGTAGACCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATTGTTAAAATTTAAatgggagtaatatatctatcacagtgtcagccacattatgtttaataaactttaattaccattccctctcgcctattcccat
tgtttataaaggccatttttttaaattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtg
tgctgcacccattaactcgtcatttagcatgaggtatatctcccaatgctatccctcccccctcccccaaccccacaacagtccccagagtgtgatgttc
ccctttctgtgtccatgtgttctcactgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgttcttgcgatagtttactgagaatga
tgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 460 142 NA intergenic
0 chr14 78416054 78416357 1000017 0 + Ya5ac2404; RIP_Alu_chr14_078_01 GTCAAGGTTCTGGCAGGAAA TATTCACTCCCTTTCCCCCT SINE Alu Ya5 ttttaattgggttatttgtttacttgctatgaagttgtttgaattctttatatattttagatattaaccccttatcatagaatgacgcattttaagacaa
ggaatgaatcttgtgaaagcttaattccctgtcctaattcctcaccctttacacctccttgcactagacacactcatttacaaactctatacttctactg
tattcctatgactggagggtgtttatgagaaaagcaggtgagccttagagtaccagtatatcaatttttttccacagtaggttaagggattcatggaggg
accccccctgccccccaaattgatttgccttttgcattagtcaaggttctggcaggaaaactggtgacactctcaaatgggggtaataatatAAGAATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGAATTGacccatttacaatagtataggcagggtaagtctgttgtcagggaagccaataaaggatggagaagcacctttttacccattacctctc
ttaggcttgaagggggaaagggagtgaatatttattggaacaaagagccagagatgtggctgtaactgggagagggcctcccaataggatctgaaaagtt
cagtagtgaaatgcaagcactgcaacccgaggcctggcagggaggagaccaaagaaactgatatcccaatctcacttttcccactccctggctttctgcc
aatgactcccatttgatgcagtccagaaagatgggcttcctagagagcagagtagggtggaaaatggattcagagggccatgaagagtatcagagtatca
agaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 491 179 NA intron:NRXN3:NM:004796:7/17
0 chr8 72319395 72319396 1000018 0 + EYA1; RIP_Alu_chr8_072_01 NA NA SINE Alu Ya5 agcatcggtcctaatacagtaagagtctgacataacagtctcaaagaaaaaaagaatctgacataacatatgcaagtgttacgaattatgttggacatat
cttagtggtgattatgtaactgagaaatatgtggcttctgataatcaacaaagtttaagattcttgaaatcaaattttaatctttactactggtcatgta
ggatctaactctgaaaatcaacagccaaagtaaagcaaaatagaaatcccataaaggcaaaacacattgccatattaccaacaaacctctgtctcactat
tccaattatacattaaaaaataatatcctatctttattttaaaaccaatcacctattttcagacatgcaaaaatatgtattaaaaattagaacAATAAAT
GTGTGTCTGNNNNNNNNNNAAAAAATAAATGTGTGTCTGtctgccaagttgaaaatcatttcttccattcgcagtccaagggaaactgaagtgggtggat
cctaaaataagaatatgacaggtgaagaacatgtatacttcaggttacatgaaagagagtgtctcattaagaggaagcaggcattgggagaggctgaaag
caagagacacagagagagacttgggcaacagctgcttattttagtgtgcatgacttattctgtgtgcaaacttcagggacttattttataaaaagagccc
caaatgttgatggtgctttacacactgaagaaaaaactctttctttacttttttaaaatttaaaatctagggttacttagacatataaaataaaggaaat
tcaactttttatgtctatttcag Other - Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, Vincent C, Levi-Acobas F,Cruaud C, Le Merrer M, Mathieu M, Konig R, Vigneron J, Weissenbach J, Petit C,Weil D. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in theeyes absent homologous region (eyaHR) of EYA1. Hum Mol Genet. 1997 Dec;6(13):2247-55. PMID:9361030.
E:Library screening:TE-specific hybridization NA NA NA NA Brachio-oto-renal (BOR) syndrome exon:CDS:EYA1:NM_172060:10/16
0 chrX 49742082 49742083 1000019 0 + CLCN5; RIP_Alu_chrX_049_01 TCCATCTTCAATTTGTTTTTTCCTTC CGTTTTAGCCGGAATGGTCT SINE Alu Ya5 ctttcttgaagccaaagaagagtttgctcataagaccctggcaatggatgtgatgaaaccccggagaaatgatcctttgttgactgtccttactcaggac
agtatgactgtggaagatgtagagaccataatcagtgaaaccacttacagtggcttcccagtggtggtatcccgggagtcccaaagacttgtgggctttg
tcctccgaagagatctcattatttcaattggtaaggatttcagaaaggggatagtggaatccactgtggaactcaataaatatgcctgaaatgggggaag
acagggaaggggggactggttaggagccagaaggatagagctagcacgtccatcttcaatttgttttttccttctgtttgaataGAAAATGCTCGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATtCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTaGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAATGCTCGAAAGAtagcacttccatcatttatttcacggagcattctcctccattgccaccatacactccacccactctaaagcttcggaacatcctc
gatctcagccccttcactgtgactgaccttacacccatggagatcgtagtggatattttccgaaagctgggactgcggcagtgcctggttacacacaacg
ggtaagaagtcttgagtgaagtcaaattgaattgtgggagaaagagaatgcagagatagaaagaagtagaaagaagtagaacccagtttaaatgaacatt
agtagcacttttaggacttcttgaagctctgagatgaaagtggataggtttttttaaatcataattaatgtaaagggagtttgggaaagaacatgtgtt Other - Claverie-Martin F, Gonzalez-Acosta H, Flores C, Anton-Gamero M, Garcia-Nieto V. De novo insertion of an Alu sequence in the coding region of the CLCN5 generesults in Dent's disease. Hum Genet. 2003 Nov;113(6):480-5. Epub 2003 Aug 29. PMID:14569459.
E:Insertion-specific detection:PCR estimated sizes for PCR products, polyA length unknown 60 650 300 Dent's disease, low-molecular-weight proteinuria, hypercalciuria, nephrocalcinosis, nephrolithiasis exon:CDS:CLCN5:NM_001127899:14/15
0 chr6 141367415 141367726 1000020 0 - Yb8NBC576; RIP_Alu_chr6_141_01 AGTCTTAATGGGCGCTGAGA AGTGCCTCACCCAGTAGCAC SINE Alu Yb8 tttgttcaacagaactgaaattgctttacttaacttttatgcaaatgtaactatatgcaataaaagaaatttaaactcccgaacatattaaatcgctcta
gaattttggatttttataactcttaatgaaatccataatgatatacaaaagtatatcccaagggattttaaaatttctaaatgttattgtcacttagaaa
atcctactttttaaaaagaccatgccttaattttctgataggatactctttttgagaaatgtctacacaataatagcatgtacactaaggtatgcaaaag
taaacaaataagggattattatatatgtttcaataggaacaacaaatatatttttcaaaggccaaaatttctatttataggcaattAAAAAGTGGATTTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGTGGATTTTaagtttgcccactagttagttcccctggtcttcaagagtaagactacctcaatagagagctccactgggaagcc
acatgctctcatcactaaaattgtccaaataatgaactgatatattaatataatatgctgaaacaacaaacattcgagaaaacaagagaaatactgctga
tttgagacaacaaaattagaacttggatcttttcattaaataaaacattttttagatgatgttttcaacaagatttgtgtaagagagggcagtaagattg
ggtacaaaatcataggctaaatatctcttttgattccttgagagagagaagacaggtgtgatgtggatttcatggattttagatcattttctttcttcga
cattgactccaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 55 475 149 NA intergenic
0 chr10 123266987 123266988 1000021 0 + FGFR2Ya5; RIP_Alu_chr10_123_01 AATCATTCCTGTGTCGTCTAACC AAAAACCCAGAGAGAAAGAACAG SINE Alu Ya5 gagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttatccctg
agggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaaccaagaaa
agggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaatagaattacccgccaagcacgt
atattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgttaacaccggcggcctaGAAAACAAGGGAAGCA
NNNNNNNNNNGAAAACAAGGGAAGCAaaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggggctt
cagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccacaggcc
cgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttggtttg
catttaggggtggttttccaaaagtatggtgcccagaaggccaagctggttctggtcctgttggctgcagactcccaccaagaggaaagggtagttctat
ctaaattgct Other - Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR,Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO. De novo alu-element insertions in FGFR2 identify a distinct pathological basisfor Apert syndrome. Am J Hum Genet. 1999 Feb;64(2):446-61. PMID:9973282.
E:Insertion-specific detection:PCR NA 62 590 225 Apert Syndrome intron:FGFR2:NM:022970:8/18
0 chr10 123266882 123266883 1000022 0 + FGFR2Yb8; RIP_Alu_chr10_123_02 AATCATTCCTGTGTCGTCTAACC AAAAACCCAGAGAGAAAGAACAG SINE Alu Yb8 gagaataaattactttgaattttaccaaagtaatggcaacttgttccttaagagaaagggggatgggctaatttatacattggctcaatgactcactaaa
aatatgagatcccttcaggttttaagggtgaaatttcccttgatcataaatgtgagtgtgggatctcactgtgtgtgaatttccaaggcagttttcttat
ccctgagggatcatttttaacattttttatatctttatgcaaggataaaaggggccatttctgataacagaagctgtgttaattttatagcagtcaacca
agaaaagggaaaaaaacccagagagaaagaacagtatatacctggcagaactgtcaaccatgcagagtgaaaggatatcccaataGAATTACCCGCCAAG
NNNNNNNNNNGAATTACCCGCCAAGcacgtatattccccagcgtcctcaaaagttacattccgaatatagagaacctcaatctctttgtccgtggtgtta
acaccggcggcctagaaaacaagggaagcaaaagaaaaggctagacgacacaggaatgattgtggagggggctgtggaaccacaaggcgtcgcaccgggg
gcttcagggggtgctggccactgggagattccgactgcagcccatccacaaagcccacaaccgagagacacggagcaacactgaccagctcacctccaca
ggcccgtcaccacaccggcttcacctcctacacatgcacgcaatcaaacgcatggaaaaaatcaacccacagaggtccgttctcttggcctgtgctttgg
tttgcattta Other - Oldridge M, Zackai EH, McDonald-McGinn DM, Iseki S, Morriss-Kay GM, Twigg SR,Johnson D, Wall SA, Jiang W, Theda C, Jabs EW, Wilkie AO. De novo alu-element insertions in FGFR2 identify a distinct pathological basisfor Apert syndrome. Am J Hum Genet. 1999 Feb;64(2):446-61. PMID:9973282.
E:Insertion-specific detection:PCR NA 62 575 225 Apert Syndrome exon:CDS:FGFR2:NM_000141:8/18
0 chr17 26687655 26687813 1000023 0 + NF1; RIP_Alu_chr17_026_01 CAGATCTGCTTGATGTTGTACTAAG TGACAGCAGCTGACTTGACTTTGC SINE Alu Ya5 tctcttaatctctgaaggagtcaaatgaatatactcatcctttcctggatattttataataaattgtatttactgacaggcctgtaaataaaatctagta
tttttgaggcctcaggtaaaatagaattttcatattgattaggctgttccaatgaatattttttaattaaaaattaaattggtagagtgattaaaaacat
gttattttccttcttcaactagattacagatctgcttgatgttgtactagacagtttcatcaaaaccagtgcaacaggtggcttgggatcaataaaagct
gaggtgatggcagatactgctgtagctttggcttctggaaatgtgaaattggtttcaagcaaggtaatcacttttcttttgccttctgtactatagcata
tctgttttatcatcaggaggttttttgttttgtaattacttttaaattaaactgaacttttttgtgctaaaactttgagtnnnnnGGCCGGGCGCGGTGG
CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT
ACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAnnnnncccatgtttttttttttaaaaaaaaaaaatcctgcttctttacaggttattggaaggatgtgcaaaataattgacaagacatgcttat
ctccaactcctactttagaacaacatcttatgtgggatgatattgctattttagcacgctacatgctgatgctgtccttcaacaattcccttgatgtggc
agctcatcttccctacctcttccacgttgttactttcttagtagccacaggtccgctctcccttagagcttccacacatggactggtcattaatatcatt
cactctctgtgtacttgttcacagcttcattttagtggtaagttctaggaaaggaatttgtgtttaccagttcctttctccattttacttcacctgatca
atatagattatcttatttatgtttgtgctctaacaccaagttgctaatttaagcctccagtaatgacatgaaatattaccaaaaagaaaata UCSC - Wallace MR, Andersen LB, Saulino AM, Gregory PE, Glover TW, Collins FS. A de novo Alu insertion results in neurofibromatosis type 1. Nature. 1991 Oct 31;353(6347):864-6. PMID:1719426.
E:Insertion-specific detection:PCR precise insertion position unknown TSD unavailable 65 800 480 Neurofibromatosis exon:CDS:NF1:NM_001042492:42/58
0 chr11 82271187 82271484 1000024 0 - Ya5ac2084; RIP_Alu_chr11_082_01 TCATGGAGTTGAGGCCTTTT CACTACCTGGGAGGACCAAA SINE Alu Ya5 ctactctggatcgcattgctttatttatttatatgttggtatcctgttagactgtgagcagcctgagtgctaggactccacccatcagtgtatctcagtg
tgtgccttcatcagctcttcagacaaataactggctcaagctgaagttattcttctaccattagtacttggttttgtcaacagtctgccagtattgtact
accaatatggcatagacactggccagtgggaacagaagctagtcatggagttgaggccttttgaagtatcatcgttctttaggtctggagatctaaaaaa
gggtctgtggcagtagggctgtgtgtgtgtgtgtgtgtgttgcacaggtagtttttctccaactcatatggaaatatttcagtattttAAGAACTGGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAACTGGCTCagtatcagctttggtcctcccaggtagtgagtgcctacagaatgggattctgtctgtactgcttagtgtccctaatatggatatctcagc
acaactcaggtgtccaaaacaggtttaacttctatagcaaatgttaatgttattacataacacttctttttaaaacttctctgaatttttcacattacta
tgaatactactgcagttgaccctagaacaacatgggtttgaactgcacgtgtccacttataaacgttttttttcaatacatctcttctgtctcccctttc
acctcctccacttcttctgcctctgccacccctgagacagcaagaccaacccctcctctttctcctcctcctgttcagccttctcaaagtgaagatga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 497 180 NA intron:PRCP:NM:199418:2/10
0 chr12 57344522 57344826 1000025 0 - Ya5_518; RIP_Alu_chr12_057_01 GCAGTAAAGGAGCAATTATCACAG CCGGAATAATGTAAAATCACAGTGC SINE Alu Ya5 gtaagagcaaagggtagggaaagatgaatcaataacagcatcaaactcacagatgcaacagctgaagtggcatggggctgcaaataacagagcatcctgt
agaaggaatatggtctagaaagtgagggctggttatcagagggagatatgaaagaagagagagtggggttctgcggggcagagagagatactgtggaaca
aacttaaacttttcactaatagtacaaaagtagtttattttaaattacaatggaaatttatatttgtaaattaaaatagtgctatgtaaaaatatactta
gaaggtcatatatgctttaagagaaaaaaaaacatattttctaggaactataaattaccggaataatgtaaaatcacagtgcttcAAAGAAGCAAATGTC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAGCAAATGTCtttagatttgctcatttccactttaaacatttgttttcctagaacatgtgtcctataaataatctaacacccaatataaa
atttggcaagaaatatagcccattaaatttatcctattgtgctttctttatctgtcacatattttaatgtggttttattaactgtgataattgctccttt
actgctaatgatagtatgatactgttaacaatcaacttccaaggtgatagtctttatgatctgcacctccctcagtaattgcactaaaactgtgtgcctg
actcttgagttaaaggacacttgggtttcttgtacttgagtcaatttggtctcctttccagatggtaaattaaggactatgctatcctcttactccaaat
ttcca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 548 228 NA intergenic
0 chr12 90989647 90989952 1000026 0 + Ya5ac2221; RIP_Alu_chr12_090_01 ACAGCGGGTAGGGAAACTCT TGGCTACATATGGGATGTGG SINE Alu Ya5 agtagattttctcctggggaaaccagtagcaatttatcttgttcttgctctactgctggcatacaggaggttgggcatttaatagacagtcatctgccag
taggaggtaataattgttttttagattaaaaacaaatgaaatatgaagggagttactgccatataggaggaattggagccaatgctcaagtagtcttgtc
tagagccaatgtaagaacttctgttggaaaactacacttttatgtatatgtatgagtttctgcatgtgcatgcatatgagtgctttagcgtcttgtagat
gtgtgcatgacagcgggtagggaaactctggaaaaatagccagtgaagacccaaagcaactcttattttctacactcacaagtactatAAGAGTTGGATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTTCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTTGGATCaatttcttgtgcttaaaattgggttttattttgtttatcttttccacatcccatatgtagccattttctaggaaaaaattac
actgatagcaacaaaataatttttcaaaatgtatataagaaacagtgcaatgtaagacatgtagaagagagccagaatatgccttggtggattgatgaga
atgctaagcaacgaaagacattcatgctgcaatctatacaactaagcagcctgaaacctcctccattattcaagtttgaattcagaaagaagacaatggc
cttattcagctccagtcaatcctagtgttatgcattgaattatttccccctaaaagttgttgacatgctaactcccaatacctgcaaatgtaactttact
tgaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 472 154 NA intergenic
0 chr14 38087735 38088034 1000027 0 + Ya5ac2370; RIP_Alu_chr14_038_01 ATTGCTCTAGCCACGCACTT AAAGAAACTGACGGGGTCCT SINE Alu Ya5 gtatctaagacatactttatagaggctacaatttgaataacaggaacaaagaagaaataactcctttgtccaccttcaaaacttttgatacactgcaaga
gcctgtaatttgtaaaccatttaatctcacagggggaacctaggattctcagagtccgctccatcagggcaactatttacagcagactttcctcagatat
acttgttcactttgtgctactccctttgatgtaggtataattaagctgattgcagccccagttggccactatgttcaaagaaaaaacccagtagcaattc
aaaatgattgctctagccacgcacttttctctattccttgcgtaccttgaggatggttgtatagccccaaggcacttgctgttAATATTAGGGAAGGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AATATTAGGGAAGGTTTtattatttcgtaaatctccatcagccccttcctctctcttcgtagtggctttttctaggaccccgtcagtttcttttgacagt
catcaagttgcttaggatgcagaaaagcctgcctgccatcattccccacatctgttcttgtaactacattctcttccacatgtgtttcctctctgaggca
gtcgagttgctgaagctcagtgagctgaggtggattctaaattacgtccagacctataagtcaactaaataaaggaaatgtaagggggaagaaagtaaat
cttcaattcttcttagtaatttttaacttcagagaaataaaagaacacattgtgataagtttgacatcactagatgaaaaaaggccataagatatatgtt
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 487 170 NA intergenic
0 chr16 26290912 26291233 1000028 0 + Ya5_464; RIP_Alu_chr16_026_01 TTGGTCAATATCGCTCATGG TGGGAGTTAGGAAAAACTTGG SINE Alu Ya5 ggaggggagggaggaaggagacaaaagacaggaagtggggagagagagaggagaggagaggaaagaggggaaaagatgaggaaaggagagagagagaaaa
aataaatagctttttttgtttgtataatctgacatcttgtagacagttttttagagagatcaattctgtccctttgagttttattttaaaaattagagaa
ataggctatttggctagtctgcaagacttgtcatagcctctgggtttactgggcgattggcaggccatagtgtaaataatgacttagaactactggttca
acttctcttcaaaaataaggaactaggatccaaggtgaggcccagtgacatacagtgacttggtcaatatcgctcatgggaaggcagtcAAAGCTGTAGG
TAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGCTGTAGGtaggaccaagtttttcctaactcccagttctcttcatcacatgatagaatcaggagagagctcttct
cctctgtcacccatcagtcacctctgaccttgctatttattcccaagagtcagagaggcagagtgtaccctctgccttcggagatatcaaagtcatcaaa
cctggacaagtgaaagctttggctgaccaggggcaggggaggttgggtgtatctggctgcttacaattcagaagttgacatcagctcagctgcttgcatg
ctgtgctaaatctcaacgtgtatagactgaaaatcacccagttactttgcgaaaacagcagtttaataagattaggaggagttgagaacacttgttacgt
tcaaggcaataaaatgaaaagc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 57 400 67 NA intergenic
0 chr19 35709190 35709490 1000029 0 + Ya5NBC349; RIP_Alu_chr19_035_01 TCAAGAACTGTGGGCCAAAT GGATGTTGTCACAGCAGCAT SINE Alu Ya5 tctcaccaaggccaggttcttaggtgaccctgctcagcgacacgaatggtctctggggtgggctccagcccacagtccctgtcccacagagaagagacag
gtgtgcagagcccaaagagacatgtcacacctgatgtcttgtcccaggtcaattctgtgaatcccaaaccttgcccgctgcatccagggttgcagtctct
agcctggggactgagagtacctgcccacagccagcccatagccaccccttggggccttggcaagatgtggcggtctgcggatgacaggggatgttgtcac
agcagcatcacatggtgccagagggcagagaccccatgggtggcctaatccccagcagggagtttcacagactccaccaacaattAAGAACAGGTTCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAACGGGTTCAGGgcttgggaaaaccagaaacacatttggcccacagttcttgatcttgaagccctggtatattttaaggaaaatgtaatccatgtg
tttctgattcattttcacttaactcatcaaaatgttgctttagagaaggtatttgaaatcctagtgtcttatatttctccctttttctttttttgagacg
gattttcactctgtcacccaggctggagtgcagtggtgtgaactcggctcgctgcagcctccgcctcctgggttcaagcgattctcttatctcagcctcc
cgaatagccgggactacaggtgcctgccaccacacctggctaatttttgtattcttagtagagatggggtttcaccatattggccaggttggtctcgaac
t UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 469 53 NA intron:ZNF536:NM:014717:2/5
0 chr20 31798801 31799110 1000030 0 + Ya5ac2698; RIP_Alu_chr20_031_01 GGTGTCATTTCTGCCATCACTAT CTAGCAAAACTCACAGTCAAGCA SINE Alu Ya5 tgaagttgagatgcctgccaacctttaaacggaggcagtgacaaagtagacaatgtagatttccaagtccggaggccagagcagaggacaaggctggagg
catctggggaagcttccagagtcctcagccgaaaacacggttctggagcaaagacaccctggatagggggctcatagaaagactaaaggatccctcataa
aggaggctgggcatatctcaggatgccaggtcaaggggtcagattttcaactggcttccttttctttccttatccctttagaacattatcttcattcatt
gtataggtgtcatttctgccatcactatgaaagcattcaccccagacccataggacatatagactgaaacaggcatcttctggcataaaACAGTCATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GGACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAACACAGTCATTTTtctcactgcttgactgtgagttttgctagtagaaaatattcccctcaccatctcttacctttttttttttttttttgag
acaaggtcttactgtcgctcaggctggccttggctcactgcaacctccatctgccaggttcaagtgattctcctgcctcagcctcctgagtagctgggac
tacagacacccgccaccatgcccagctaatttttgtatttttattggagatggggtttcactgttggccaggctggtctcgaactcctgacctcaagtga
tccgcctgtcttggcctcccaaagtgctggaattacaggcatgagccaccgtgccacaccagatattcttcttgacctaagatacttgtggacttcatgt
ggacatgtgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 447 127 NA intron:ZNF341:NM:032819:3/15
0 chr10 35633229 35633545 1000031 0 - Ya5_541; pAlu10-35743364; RIP_Alu_chr10_035_01 GGATTGGGAAAGGTGTTGAA TGGCTGAGAAAACCTGCAAT SINE Alu Ya5 catgacacttgtatattaggctcctaaatactgtgcaacacggcaacagtgatgagaatcactactcttagaccacacttgaattagtgtctcttccatc
cacccacgttttttggctcttcttcctctgatctcccctgccttgaggctcagcactccccctaacaccctagtggttctcaacctgggcaattatgccc
ccaggagacatttttggttgttgcaactaggggatgccactggcatgtagtgggtagaggctagggattctgctaaacatcctacaaggcacaggacagc
cccccaaaacaaaaatgatctagctccacatgccaatagtactgtggctgagaaaacctgcaatatgctaaccaaaccacttttaatTAAAAGGAGAAAA
AAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAAAA
TAAAAAAAAAAAAAAAATAAAAGGAGAAAAaagccttttcaagatcttacaacggctcttattagattataaattgtaacctcctcagccttactttcaa
cacctttcccaatccatttctaacctacctgtcacctgaactgagcaaacctatgctgagctcccccatgtgcaggaggtgcaaagctactgaaagacga
agaggggttggtgctttccagaagcccattcacgggtgcaggagacggagaaactggagcatgtggctagcacccagcaggtatcaggaatggtctttcc
tttcttcctaattagctctaattccaggctgactgtgatgggtggataaagagtggtggatcttagtgttttccccacatcgtaatctgtgctcttgttt
gtcttttaatctattag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 471 141 NA intron:CCNY:NM:181698:3/12
0 chr10 55628261 55628441 1000032 0 - Ya5ac1925; RIP_Alu_chr10_055_01 TCGGGGAAAGAGGAAAAGTT GCAGGAATCCTCTGCTTCAC SINE Alu Ya5 tagatctgatttgaattttatttctcttttcattgaatcactttgttttcatcatgcaaataatacatatttttactggcttcacagctgctggtaaaaa
ctaatgatatatgatctgaatgtaaaatgtaagcttatttcattattatacaattttgcttttttcatcctcctcaccacctatatattgtgtgtgtttg
ggtgtgttcatcggggaaagaggaaaagttgtagaatttatgacttttcatagcatttttatgtcctggatatgacatgctggttattggctcacgcctg
taatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaacggtgaaaccccgtctctactaaaAATA
CAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT
GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAATAattagatattaaaga
aagatggagagatacaagaaagagagaaaaaaatctgttcaaaatgccttgcatgtatgaactgctctgagcctgtaagagtgaagcagaggattcctgc
ttaaatcatttcaaggtcattgggttggaagcccatatggaccaattagttttaaacagtgaaaaaacaatgttttccaggcgtagactctacctcttgc
cctggtcagctgtctccagaaagcctgatgtgtgtcacaggggtaactcctaaaagaacatccatcgctcggcacaaattaatcacaactgctggatgca
gaaagacctcatccatactgatggtattagcagcatgcctggttatgtgagatggatacataatcccagacaggaccaaac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 490 195 NA intron:PCDH15:NM:033056:10/33
0 chr10 54688751 54688976 1000033 0 - Ya5ac1926; RIP_Alu_chr10_054_01 TTTTGTGAAGAAGCCCTGGT GCAGAATAAATGCTGCAACG SINE Alu Ya5 caacccattaaatcagccttactaattgcattatgtctggacatatttatatatcacctatcttcactaggcatcgtagagtacaactttatataaagta
cctttctatatactatttaatgctttcaagtcctggattcagaattgtcttataccaaaatcagagccacactttcttatttcacatttgtttctaaaag
ttttccactatgtgttctacttttcatttattcatcttcttgttacctgattatacttttaggtacttccttactttctggcacaataaaaagttccatg
tttatcttgtattttcttctcccttgtccctgaatgagtcattttgtgaagaagccctggtttcttttaacatcgagtgacatttatAAAACAAGATCTG
GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGATCTGagtgctagttgtaggtcttttcagtggacagatttagtaaatacacatatttgtccatgaa
cacagatatacccttatatctgtctctttgtctatcaaccatctatccatctttctctattcatctatctatcatacaactaggagttcactttgatacc
tctaaatttgattgaacgttgcagcatttattctgccttgttgatttctacatttgtaaggcccttctttgaaagtgagaaacctggcaactaagatccc
actattctcaatacatttatacttactggctcagtaccagtgtatgtacttacacttctagtttgaattgcccaaagttcatatcggacacactgtcccc
caatgatctccacctggtgggtctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 495 256 NA intergenic
0 chr10 26807964 26808253 1000034 0 + Ya5ac1939; pAlu10-26918096; RIP_Alu_chr10_026_01 GCCAAAAAGGAAATCACAATG GTCTCCTATCCCAGCCATGA SINE Alu Ya5 aggaaaagaaagaggcacttgggctggagatgtgctttgggggttggcagcatatgtatggtatttaaagccctaagagcaccaagggagtgagtgtaga
ccaaggctgaagagaaatgaggtcaggaaggatgaggaggaacccacagagaaggctggaaggagaagctggtaaggtagatagggatggagccagaatc
tctggggcctgaatcttacacaattttgggaggctcccttttaaaaagaagggatttttttctacttggggtgggagatgaagtctccctttaaaaaaat
acaaaattgtcaatgaaaaattaaggacaagagggaatatttatttagagccaaaaaggaaatcacaatgaatgaccaatttttAAAAATTGACATATAT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG
AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGAC
ATATATaacaaacatgtacatgtacccctgaacctaaaataattttttaaataaaataaagaaaaatatttaaaatcatggctgggataggagacagcaa
taatttataaagtgtataatttataaagtgtatttgttattaatcactagagatcactgaacccaaaaggacttaactgtgatactttactgtgaaaaaa
tagttttcactgcctaaaatgaaactctttattttacagcattattagaatatgcaaacatttgaaaaaaaacaataaaaataaaaattgacacgtaagt
gtatatatctaaaaagcaacattgtaatctttatgatgattaaataacttgctgatgtatttttgctacgcttttggctgcatattcttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 446 140 NA intron:APBB1IP:NM:019043:2/15
0 chr10 20707266 20707571 1000035 0 + Ya5ac1952; RIP_Alu_chr10_020_01 AGCCCCAGATAAACCCACTT CAAATTTCACATACACAATGCAA SINE Alu Ya5 atagatatacaattttttgtttcaatatgaaatcatagtgtaatcttttaaaagacattttaagtggcaaccatatatgcatctatgaccaactttaccc
aagtacaggaaatggcatatggtgacgctatctggccagcagcttttgtgaagcactctagattgtgtaaagtactacaacctttgagaagttaacatgc
aaaaaatacgtgcatctcgtgcatctcagtagtgtggccaagtgtcgtcgtttacccaggattgatgaggttctcagaacacgggacttttagcacaact
aggaagccccagataaacccacttgagttggtctctgtaatcagaatcaattcagtatgattggtcaaaggtacaaacttttagttAAAAGATTAGTAAG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGATTAGTAAGttctggggatgtaatgtatatcatgacaactccagttagtaacattgcattgtgtatttgaaatttgtaacaagagtgta
tatatatatatttttttgtttgtttgtttgtttgagacggagtctcaccctgtctcccaggctgaagtgcaatggcgccatatcgactcactgcaacctc
cacctcctgggttgaagtgattctcctgcctcggcctcccgagtagctgggattacaggcgcccaccatcatgcccggctaatttctgtatttttagtag
agacagggtttcgccatgttggccaggctggtcttgaactcctgacctcaagtcatccgcctgccttggcctcccaaagtgttgggattacaagtgtgag
ctacca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 483 163 NA intergenic
0 chr10 49948022 49948340 1000036 0 + Ya5ac1960; RIP_Alu_chr10_049_01 TGAGATGTGCTGGAGTGTGAG CAAAAAGGTAAAAAGCAACAGG SINE Alu Ya5 gaaaggaccagggtgcaccccttactacacacagccctgtttccaccatgtcaggccccagagcccagccccctccaggaatgagtcctgcctggacaac
cttccaggcctacagttataaggacaggaccacctctatcaccaagtgggaagctgaggagaagcaagtcctccacctcctgcccctttggcacaaaaag
ccacttagaggccacatttctcacatgcaaaggaccagcatgcacagctgtctgtccagggtcccatagtcccacatggcagccatgagctccaggtggc
tatcaagtcccaaaatgtgatgaatccaaaatgagatgtgctggagtgtgagatcacaccagatgataaagccacaccttagcataaaaaaagaaATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATCAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAATATGACATATCtcattcatcatctttatttgttgatactgttggaatgatattccagatacagtgggttaagtaaaaatattaaaat
taattttacctgttgctttttacctttttgaatgtgactactaaaaaaaaaaatggtcagatcacctgtatggctgacatatttctagggggcatcatga
aaagggccttcacttgtctgagcagctgggctgccagtggtgaaggggcaccccaggaaggatgagccctgcacatgagaaggtgcccctgcagctgccc
atgccaggaacggcagtcactcagcacagtgaaagtacctcccacagccccaagaggtaagaggaaccttcattccaatgttagagaagagtcaggagtt
cagaagacccactttataa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 499 182 NA intron:C10orf72:NM:001031746:4/8
0 chr10 57372054 57372380 1000037 0 - Ya5ac1972; Ya5-MLS07; RIP_Alu_chr10_057_01 TTGAGTGGAAGGCTTTGTCA TGACAGTATGGGCGTAGGGT SINE Alu Ya5 acttacattaacttgttcgagattttaacttaaaaacttttctgaggcttgagtttatgtgaatttagttttactaaactttttggaggaggctatcttc
agaatagcttcttctacctcacatacttcctcttctgtggttttctcctggctctgatgtcctgcctgccccactccctacccacactcttttgatcttt
acctccattctccccattatgctcaatttgtgtaccactctctttgtttttcctccgtgtagtgtggaccttatctcataaaggtctttgagtggaaggc
tttgtcaattttggctttaataaaataaataattcaaaaaataaaaaacaaaaaatcccccacaaagattggccaacctacattaatAACCATGAAATTA
GAATAAGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGG
CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGA
GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCATGAAATTAgaataagtcaaggatcagtttgctcagaccctacgcccatactgtcagtcttttctgact
aaggcatttttagataacaaaaatagtaaggacatgtagaacaaatcattttacacattcatgaattatcagtcatttgttaaactaatggacagctact
aaatttgaaaactacaaactatagcagaccactacttttaaattcaaatatttcttgcattaaaaagaaagaaaaatctattgaattagaaaaaaaatgt
tagattgaggttcttcttttgtaattgaataattttaattagataatgtttctaagtaaaaactttaagtgtgtttgctgatttggtattactttaaaag
tacagaaggaaaagtacagaaggaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR NA 60 500 167 NA intergenic
0 chr10 65938806 65939098 1000038 0 - Ya5ac1975; RIP_Alu_chr10_065_01 GCTGCTTAGCATTCTTCCCA TGGATAATTTCTGTTCCTACTTTCG SINE Alu Ya5 taaccagttaaaatgaaaccagagaatgctatactaaataatatagctttgataacatttaatataattttttgttagcttatcaatcaaaggttttaga
caaccacattatcaacatattagttgtttctttgaatttgccaggaaacttgaattttccttgaccacatgctgaaataatttctgttcatggaaattag
ttggctttagatgttgtttggttgtaaaattatggtttaccattatttttgtttgtttatagttaattagcattttcattagctgcttagcattcttccc
actacagaagtgtttctgtaaattcttcaaaacaagcaactaagaaagagaagaatgatatttcaacaaatacatataccctttAAAACTGTATAAAACG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACTG
TATAAAACGaaagtaggaacagaaattatccaagttaaaaaacagatgattcatctggacactgagatatatgattacatttattgaaaacacttcaaaa
aaaagtacaacttattgaacaaagttattgcaaggtcacttattactggagataagatcagcgttaaaacctacaataaaatctaaatttaaagacttcc
taaactggggtttctacaattttccttaatgatttttttaaatgtaaaactcttattttctaacttacatttctcttgttgcaattattttggagtcaga
tttagaatatattaaaatatttagtcgtagcaactttttttcagaggtcttatgtttacatctaaactggatctgaagagggttttgtgtgtt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 451 142 NA intergenic
0 chr10 69942117 69942424 1000039 0 + Ya5ac1980; RIP_Alu_chr10_069_01 TACACCCCAAGACACTGGGT TGCAACTATCTTCATATCCAGGAG SINE Alu Ya5 tcaagcaattctcctgcctcagcctccttagtagctgggattacaggtgtgcgccaccaagcctggataatttttgtatttttagtagagacggggcttc
accatattggctaggcttacacacgtttaattttgattctttgtatacatgagcaataaactgtgtgaggaagaattcattgcagaggcagggcacagtg
gctcatgccagtaatcaaagcactttgggaggccaagacaggtgggtcagacagcttgagcccaaaagtttgagaccagccttggcaacatagcaagacc
ttgtctctccaaatatttaagacaccctgtcacaaataaataaataaatacataaatacataaattagtctaatagaaactaaattAAAGATAAATGATA
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGATAAATGATAattcactcctggatatgaagatagttgcaatttttctatttcaaagtacagacttcctcactattaaaaatgttggtt
ggggctggaagtggtggctcatgcctataatcccagcactttgggaggctgaggcggatggatcaactgaggtcaggagttcgagaccagcctgaccaac
atagtgaaaccccatctctactaaacatacaaaaaattagctgggcgtggtggcgggtgcccgtaatcccagccactagggaggctgaggcaggagaatt
gcttgaacctgggaggcggagtttgcagcgagttgagattgcaccattgcactccagcctaggccacaagagagagactccgtctgataaacaaaacaaa
acaaaatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 1130 808 NA intron:SLC25A16:NM:152707:2/9
0 chr10 71280181 71280182 1000040 0 + Ya5ac1986; pAlu10-71502576;1104685137744; RIP_Alu_chr10_071_01 AGCAAAAGGCAGATTCTGGA;NA AGGCAGTTTAACGTGTGGCT;NA SINE Alu Ya5 gaacacatagtgacggtgacagacattagctggtggctgccctggagccataaaactcccactgggtgagctggaggtggagggaggcgctgatcacttt
ggttctcaactacagcaaaggcagacgagatccaaatgtccatggatgagatctaaatgtccacatttgtaaaatgaatttgtgcattaactcattaaat
cactgagtttggaactctaggtaagtttagactgtgcgacacagtacgatacagggcaaaaggcagattctggactccacaagatctgggttcaaatccc
agctctggcatcaagaagcttcaggaagttgggttctttcaaagcctcggccctgtctctagtgggatgaggataacaatcctcttAAGAGACATCAGGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AGACATCAGGAgaggacctggagccacacgttaaactgcctggcatggggtgacactcgagaaagagggtttcttaccccatggcacatgtctaatgcag
gggccttccagcggcctcctgcgtctggaggaagccacctactgagaggtctctgccagcctgctcagggtactgcttttcttagtgctgtcttttacca
atgggcaaagggcgggctgttgtccttgtgatgctgaggggggctgaggcagatcaggttccctgggaagctgactgtcagccagcagactctacataca
caccattgaaaggggaggggaagagagagaagggaaaggcaacagaccgggcaaaggaagatgatgagctgtgccaactctcagtgatggcctcagc Other;Venter - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 55;NA 487;NA 176;NA NA;NA intron:COL13A1:NM:080807:2/37
0 chr10 74468392 74468689 1000041 0 - 20268; Ya5ac1988; RIP_Alu_chr10_074_01 TGGCAAGTCATCTCTGTCTTTT TTCCATTTCTCTGATCTACCCAA SINE Alu Ya5 acaaacaaacccataaaacaaaaaaggcttttttttttttaagaggcagggtcttgctctgtcatctaggcctaagtccagtggcatgatcatagctcac
tgctccttccaactcctgggcagaagtgatcttcctacctcagtctcccgagtagctgggaatacaggtgctcaccaccatgcttggataatttttaatt
ttttattttgtagagacagggtttcactatattgcctaggctggtctcaaactcccgggctcaagtgatcctcccagagtattggtattacaggcgcgag
ccattgcatccagccaaaaaaggctttacttatgttactgacaatctgttaacttttggcaagtcatctctgtcttttccactattAAAAAGCAAATAAA
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGCAAATAAAaaccctaagaatttactacagcttgtaaatgaaaaagctaataattttgggtagatcagagaaatggaatttgaagtttttgaaatgt
aaacattcagttttgtgctctgaaaagatagttaagtgaactcataaagtctagttaaagtaatataaataatgacctatgcaaataaacaataatctgt
ttagagtggtagaaaagcttttttgattctggtgggaaagtgattttcatttttttactctgaagtgatgatttcctacaatacggtatttatgatatca
tgaatgtaacatgatatatatgtatatgtgtgtatttatttatttattttattttactttattttctttcggagacagggtctcactctgtcgcccag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 425 113 NA intron:P4HA1:NM:000917:9/15
0 chr10 85591497 85591801 1000042 0 - Ya5ac1997; RIP_Alu_chr10_085_01 GTTTGTGCTTCAGTGGCCTT CAGGTGGCATTACCACTCCT SINE Alu Ya5 cagagtgtaaaatctagtgttcttcattctactgtaccacctgccatagcctggggtggggtcctgctacaagggttcccactggtagtaagatgtcctg
gagtacatcaggactgggtcatttctgcgtactctaaaactgcctttttaggtttccctcatagggccattttccccttaatattaaagtgtgtcagttt
agcctctaggaaggcagtggttgaattacaagtacaaggctatccctcctcataagctcggactcatttagcttgtgtttgtgcttcagtggcctttata
cactattgaacttcatagcaaattcatggagagtaggggaaaatatttttatcctgtgacaatctgatagaatggaatgtatttAAATAAAATCAGCATC
GGCCGGGCGCGGTGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGCCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAAA
ATAAAAAATAAAATCAGCATCcaccttacctttggtaggagtggtaatgccacctggaaggcagggttgatgggaagctctcaggcagcatgctcatact
ctctggccttggcatttgctcactgggtttcagggggagctcatctaggttccccaattctaacattgtgtactttcttatttgaaattctgataggttt
tcagcattaaaacaattcccagccttttctaatttggaaaattctttcattcatgctacctcaggaatcattattatctttttataggtaactaaattca
gaggggtcagatggcttcctcaaggtcatgctgctaagatatgagagctgaagtttttttattttatgttcactgctcttttataacatacatttatgga
tttga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 480 159 NA intergenic
0 chr11 12900319 12900585 1000043 0 - Ya5ac2013; 812; RIP_Alu_chr11_012_01 TGGCAGATTCTGACTGGCTA CACGTAAGGTGAAAAGGGGA SINE Alu Ya5 ccacctcccaggttcagtggattctcccgcctcagcctcctgagtagctgagattacaggcatgtgccaccacgcccaactaatttctgtatttctagta
gtaacagggttttgccttggtacccaggctggtctcaaactcctggcctcaagttatctgcccacctcagccactctaagtgctgagattacgggtgtga
ggcaccgtattgctccagatttggcagattctgactggctaatttttataccttgacaggcactaaccactaagacctgagtcatcatatactttaaaat
aagtatctacatttaaatttcctttttgaattggttattaggaaaatgtccaactccttaggcaaaacttcctactttctgtctacaaatAAAGAGAACC
GCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAGAACCatgtactccacattccccttttc
accttacgtgccaagaaattcaaagctaaattcagagttcaactacaataattaacttgtctcaggtgcttctaatagctactaacagtcagggtacagc
tccttttactggtttccaatctgctttaacttgtacttatccggttttatgttacccataaatgtagtgagctttcctcacattctgcattttggatttt
atggggtataaatcataaacaaacaaaaatacccaggtgtgcatttttctcacattcaaaggtttaacatttggctccacaaaagagcagctcagcagga
aatcatgcatgtctttccctaaatgagatcagcatctgaactcccaaggctgaagaggcccctgggt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 489 212 NA intron:TEAD1:NM:021961:10/13
0 chr11 16179750 16180054 1000044 0 - Ya5ac2019; RIP_Alu_chr11_016_01 AATGGGAAAAATCGGAATGA TGTTCAAATGCTCCTTATTTGC SINE Alu Ya5 ttctactagtcttcctttacaataaaattcattatgtcttcactatgtgtatattaataacatggccttagaatcttcagaagcaaatgaaaatttttca
ttggtttatgttttctttgtgtgtattttcatcgtataagagttgaacatgtgcttaatataaaaattaaaattcataatagtgctgtaaaatttagata
ttttaatactctcattttttacatgggcatttttctgttatttagttaattagtagtgaaagtataagtttttcacttctaaaatgggaaaaatcggaat
gatcttcatatatccttaattgggagtcacttttcatgaaaaataaatttattatttctatgaattttaaattaaaaatctctcttAAAAATACTTTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA
AAAAAAAAAATACTTTGCAaataaggagcatttgaacaaactttatgaaaccaagattattagaacctatacattgttaggtttactttaatgagttata
tctatctatatatagaatatataatatatacatttatatatttgtttattatgagtttctacatattttaaatagtgatgaattgagcctaattattcta
aagaatagtgccattcatatttcagcttgccagctacataaatttattccaggaaatttttatgacatttaaaaatcaactatagggttctatttatgta
atattaccttgtcagaaactgacattaaatgagaacaagttgtgattgtgtattcatatatcctggcttacctggtattgtcctggtttctatacctgtg
ttctt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 456 137 NA intron:SOX6:NM:033326:4/16
0 chr11 19511832 19512127 1000045 0 - Ya5ac2035; RIP_Alu_chr11_019_01 ATGGGGTGACAAGTGCAAAT CAGTCATTGTCCTCCTGGAAA SINE Alu Ya5 tgagtaggtgctcaacatgtgttcaccaaagctgttggacccatgattacaaccatgcactgaagtctgcactgtgggtacagcaggggacaaactggat
caggtcccactagatcaggtccgtgccctctgagatcccacagtctaatgggggagacaagcaataaacaaataagcaaataaacacgatgctaccaggg
gttggccaacactctgcaggcactaagcagagagatgcagtaaggagtaactggaatgataagcaaggtggcctatgacatggggctgtaaaaatggaga
cccaaatgaagaggagccacaagggtggcatggggtgacaagtgcaaatgtcctgagataaaacaattcagtgtgtctgtggatAAGATAGTTCCCAGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGA
TAGTTCCCAGAGgggagagagagagagacagacagacagaaacagagggggtgggggtagagaaagtgcacgtctcagagaaggtttcagtatgtgatat
ttccaggaggacaatgactgaaaagacagggagaacctggtttcattggggtttcacccagccctgcaggaggatgccagagggaggaaaatgcccagga
acacacatgcccaggacatgtgtggacatggtcagctgatggcctttgtaggagggagagagaattgtttacaccaatgtttgtcagccttgaagaaggg
ggtggatataattttgaccccaagaacatttcacaatgactgcagatatttttggtcatctcagctggggatggggagttgtcgctaatggcatct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 491 179 NA intron:NAV2:NM:001111018:1/38
0 chr11 39761704 39762026 1000046 0 - Ya5ac2045; pAlu11-39844195; 5052; RIP_Alu_chr11_039_01 GCCACTTATCCGTTTCAGAAGAT CTATGGCTTTTCCTGAACTTTCC SINE Alu Ya5 tgtgccattgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaataaataaatagaaagtttgaattacttccttaattccccaat
gactcaaccccaacactttgcaggctacttacatatacagttgtaagaaggagattgctcttttcacatatgtatacatgtatatgtatgcatataagta
tgccttcatttgtaactcaatatcctaaaggatgaggattgctagaaattatatgacactaaattattcaaagccacttatccgtttcagaagatatata
atggaagtctgtattcaagatgtgtaaaaatatttcactgaaatttttctttatggacaaattggtagataccagaactctgttaaaaATATTACAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACAAACAAAAAAAAAAAATATATTACAAATTgtacaaatcgtactttaaaatctttcctgtaatttttttcagccatgttatatgttcaagcaatt
taattgctcctttttataaagatttatgctttttgtgttttcaaaaagggaaagttcaggaaaagccatagttgaatgtagcatccaataaacatgttcc
ttataaatgagataatgaatctttgagaactgagggaactactctcacttatttataactctacttaaattccaagattcctaaagagaaaaatcaaaga
ttgatcagactagccttagaaaacattaccacgtattctgtagaagaaatagtgttgtgattttaatgagtaccacacaggctaagggtagatttgcctt
attcttcttcctaaaatcttaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 599 264 NA intergenic
0 chr11 25521063 25521389 1000047 0 + Ya5ac2050; RIP_Alu_chr11_025_01 GTGCCAATGTATGCAACAGG GGGCGTCCTCTCTTATTTCC SINE Alu Ya5 ttacttctgaagctatatcatccaccttacttcctaggaatacttcctgccagtgtttttcacaaatgttattattgtgttttgttgaaaacaataacaa
acatgagtttacctggattgtgcaacaaaatgtgaaaaataatttattttctgatcatgctaaatccacgatttggcattttatatcataaacatagaac
aaaacaacatccaattatgtttccttttgaaaccttcagaactactacattttcagaatgccatctttattcagtattaattacacccctaaaatcaacg
ggatagaaaagtgagtgccaatgtatgcaacaggaacaaaagtctcatttgcacaggaaatgtccatctcttccctagcatggcttAAAACCATGGATGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACAAAAACAAAAAAACAAAAAAAAAAACCATGGATGTtaccaaatcagttggaaataagagaggacgcccataagaagggactgttaatgttgcag
gaatatgaccttgaaagccctgaaaggaaagagatgtgccactcctagagtattgcttgctacctggcatgggacctgaaaaaggggtgagatgactgct
ctgagacccagtatgaatgattgcatgtgcacagcgcagaaaacggtcactgggattcctaccacccttgggtactgtagatcagaggcagcactctgtt
cagaactcagataagcaagaaccaacacataggccctcataatgtagctcaagcccatgggtcagaagtggactatttatgtcccagaaactttatggaa
tactgtggctgatactatgagggaaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 460 341 NA intergenic
0 chr11 89572170 89572500 1000048 0 + Ya5ac2095; B65; RIP_Alu_chr11_089_01 CTAAAAGGGACACCAGCCCT TGAGTTATTTCCCCTCTCCG SINE Alu Ya5 ggcaagccatccaacaccaccagattaagttgttaagatacctgggcagtagggaagcagtcagggataattaacaacaacaacaaaaaacctatcaaac
aatcaaaacaaatgaaacagaaaaccctattaacaaaacctaaaaacaagctgggcttaatagcttgcatttcaaaactgaggccatggaattatactgg
tgaaaacaaagtaaataacaaatatgaatgccaagtcaaaataatttgccataaaagatgaacaacaaaaaaaaaccctgttaatgttcaaatagataat
ttaaaagtacctgactgctaaaaacaaaatttacagagtacatacccatatatcctaaaagggacaccagccctcataaatgagcttttaagAGTTTACT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AATAAATAAATAAAAAAAATAAAAAAAAAAAAGTTTACTtactgtgagtatacgcatgacataaattttcaggctgaggaataactgattaaaaaaaaaa
aaaaaattgggagttcggagaggggaaataactcaaagtccctttaaaatatttgcaagaactctttaagtttctctacactttgatggttgaataattt
tctgaagaaaattcttaattaaatccttgcataaaatataaattagaataaagtaaaatcattacagtcctttgccagtatagttacaccaagaagttac
atcttcaacctataaacatttgttgattcctaatcatatcttaattgtttataaattactggcttaaattattaccaaaaaagtaggacaagtcttaaga
ccttgaagaattccactaaaaacagatggta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 60 481 142 NA intergenic
0 chr11 92616000 92616332 1000049 0 + Ya5ac2102; RIP_Alu_chr11_092_01 CCTGCTATTCCTTTCCTTTAGTG GTGACTTCTAGCCACAAAAATGG SINE Alu Ya5 tttgtctttttttggattattttttatcattctatttttccttctactagtttagaatatatacctgctattcctttcctttagtggttccttaaattat
aacattatgcttaagttatcaaatccccaaattaatcaatactttgctgcaccatggacaatgttagaaccttagaacatttaactcaattttctcaccc
aatcaatttacatgttattattgtcatgtattttaatgtatgagtactatttgaatatactcgtttatcactttatttgttcttaatttcttcttgcttc
tcagaccttccatttgatattgcttctcttctgcctgaagtatattgtttagaatttcctttcatgagagtctggttgtgttAAACACTAACAGATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTAACAGATTTTCttagttaaaaatatctgttttctcttcattttaaaaaccaaatattaac
tgggtataatatctagattggaagttattttcaacacattgaagaaattctgtctcccatttttgtggctagaagtcaccttttggtccaattgtttctc
ttttaaaggtaatactttatctctgtctgcttttaagattttttttcctatctctggtactccattgtttcagtgtgatttgtctatgatgaaatttttt
ttatctttctcgagattgtttatgcttcttgcaagtgtgtattattttctttagttttaaaaaataactctagctattaactctttaaatattgctcatg
gccccgctttctggctcctttttctaggacttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 NA NA NA intergenic
0 chr11 96607006 96607321 1000050 0 + Ya5ac2105; RIP_Alu_chr11_096_01 TGTGATTTACTTCTTGAGTTTTCCT AACAGAAATTGAATGGACACCC SINE Alu Ya5 gaaactgtcacatttataaggtattattaagaattcttgtttcttagagactttagttcaaatcaatccattaaaaggattggccagttgcttggtggct
gatgtaaattaaatgctatttcaatgtaaaatggcagctcttaaacagatcttattaagtgtatctatgataatgaatttcttctgaccaaatttagcag
ccttttctctcttaaacttttaaaacctcagagtagtctcgacaaatatggtttttttttttttttactgtgatttacttcttgagttttcctaagagtt
ctctgaaactttattttttctagtgtaagtttctgaaacaaaatcactgagatctctatttttgtttttctatctactttcattttAAGAGTTTATTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGTTTATTATTttacttaatttctaacttagggtgtccattcaatttctgttgtacaatcaataaagcatcaattcaaataatct
tttcattagatttgaagttaaattaataataattaaaataccctgttattttacagttaacaaagcactttcttgtatgttacataatactataaatctg
tatactagatgtgattctcacagatttggactgggtatgtgacttgtttgtcttaagattacttgtggagcttaggcttttgcattttgactgtcagttc
catattttttccaaattcaacatattaaagtacttaagctcatattccatgccagaaactatgctagcagctgaactatgaaatattttggtcccaaact
catttgagtttg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 499 174 NA intergenic
0 chr11 119224732 119225011 1000051 0 + Ya5ac2122; RIP_Alu_chr11_119_01 GATTATTGGGCCAGCTTGAA GAACAAATTCAGCACGAGCA SINE Alu Ya5 ggaatattgccacgaagtgtgttatgaggttgattagaatggactgacttgatgatcctaagagaaaggctgggtgtggtggctcatgcctgtaatccca
gcactttgggagacccaggcgggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaagccctgtctctactaaaaatacaaaaaaa
attagccaggtgtgtggcgggcgcctgtaatctcagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaa
gatcgtgccatggcactccagcctgggcgacagagcgaggctccatctcaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaaagaaaagAGAAAGGA
TCTCAGCTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGGAtctcagcatacc
tgtgtttgtcaaggaggctgacttcccacctttgccccatctttgcatttctgaaaagtttctttagagagtaaacacagttcagtcaagagccatgtcc
tctccccacacatgtggctcacagccctaagaggtggaagggccttgctttagggcgcagtgaggaatggctgcaggtgcttggtgctgggcatgtgtgt
tttgagtgcccgggtgtgtttctgtctgtgtatgtaacacacgtgtcaactgggacctatgatgctggctggaactcccttttcatatcctagggaagtt
caatgttttatcctgagatttctaagaatttccagagaggggagtgagcttgagttctcatgagggtcttggctccaagc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1123 835 NA intergenic
0 chr12 128406651 128406954 1000052 0 - pAlu12-129579553; Ya5ac2130; RIP_Alu_chr12_128_01 ATTGCCAGAAGCTTTCGTGT TTCCCTGAGCATTTACTGGG SINE Alu Ya5 gtctcactctttcacccaggctggagtgcagtggcacaatctcagctcactgctgccttgacctcccaggctcaagcgatcctcccacctcagcttcatg
agtagctaggactacaggcacacaccaccatgcctggctaatttttgtatttttattttatttatttatttatttatttatttatttatttatttattta
ttgtagagacagggtttcaccatgttgtccggaatagtctccaactcctggggtcaagcagccctcccgcctaggcctcccaaagtgttaggattacagg
catgagtcaccgagcccggcctcgtttcttatttattgccagaagctttcgtgtagcatttgttaattgacttcggcatccgccttactttAAAAATCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAATCCCttcagtttctctagaagcagactgtgagattgggatttgtgtgcaactgatttatgaaggaagcgcttccaggagaacccagtaaat
gctcagggaaagtacgacgggaatgggtggagaacccaaatgaagtttcagatgaaatcgcgtgcagggtagcttcaccctgatcccgtcgggggtggct
ctggagggcaagcgatcctgctgcctttgataccccagctagaggcacaggagcagggctgtcacctccagcatcggactctgcgtgagggcccctccaa
gggccaggaactctcaggcactttaggctctttgcgcttgtgggcaaggagacttcagaaactaaaaagagtcatcaaggaaagttgcaggtacagattg
ttaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 476 163 NA intron:TMEM132D:NM:133448:3/9
0 chr12 23687007 23687305 1000053 0 + Ya5ac2140; RIP_Alu_chr12_023_01 GAACGTGGAAAACAGATGGG ATCCCCATGTCACCATCCTA SINE Alu Ya5 tctaatatgttaaagacagcctccaggaaaaggtgatgtttaagctgaaacttgaattaaattatagttagctagacaaagaagggaagaaagattgttc
caggcagggaaacaattttcatgaagaatcaaatggaagtgttagttatagcccagtccctgtattgctgaagtacagagagcatgtagggaagtgagat
caatgggattggggagggagtaagatgccagattatgtgtgatttctgtaaacattaaatgatctaaactttatcctatacggtaaaggaaatcatgaac
gtggaaaacagatgggttgagtaaaatcacttgggtgggaggttgagagctgtaatcaactagtgagcagatgcagaaatctgtatAAAAGGTAATTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGGTAATTATGgtcagactaggatggtgacatggggatggagagtgaggcagggactccagagatatttaaatggtataactggtaaaacctaatgac
tgttacgtatgagagtaacagaagactcaaggatgacttccaggtttttcactaaaacaactgattgacatgtggtagtatgtactgggtttgtaaacac
agattagaagcaagactgccaggtggggcctaaagggtgttgttgcggggaaggaacaaagagttctgttttagatattttaagtttgaaattatgatta
gatatccaggttgaggtatttattagacacttgataaacatgttaaaattttaggggaaaagccctcataggagacatatacttgagagtggttagcat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 444 131 NA intron:SOX5:NM:006940:7/15
0 chr12 53139776 53140076 1000054 0 - Ya5ac2169; RIP_Alu_chr12_053_01 GGGCTAGGAGGAAGTGATCC GTCTGGGGAGGACATCTGAA SINE Alu Ya5 ggcatgcgagttcccaaatctctgccgtatgttctgccatggaaaaacagtaagtgaaatagagacaaaatagttttactcttttcattgtgctaaatac
agttgatcttgattattcagatgtgttcagtctgaacaccttgcatttccatgacccttaaagtgagtgcctccttaaatgttatgccctaagcacctta
ctcagttcaccctactgaccgtggttaggagcaagaaattatgaacaggaaagtataagatcacagaagccaaaagaatattttcaaaatggggtgacca
ctgacgtcaaataccatgagaaaatttgggagccaataaaaaggttaatgatttgggctaggaggaagtgatccctgatttctttcAAGGCATAATATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGGCATAATATCAgtagggaattgggatcagaaattggattgtgagggcctaaaaggaaatgagtagagagaaaatgaaagtcataagtcataagaac
cagcataaagaatggtattcagatgtcctccccagactttagaggtcatgctgggtaaacaagtactaaatttgtatcatattaccgtcataatgaaatt
tccacatagagaacacccaagatactgtcatttttacttaatacaaactttcttttccaatgttgcccctagattcagattctcttgatttcagtctgtg
ctactgtttgagctaatttttaggtggctagaggattcactttaaaacgtttctccctggatacttgcatttcccaaaaaatgaagtcaccaaattatat
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 483 168 NA intron:GTSF1:NM:144594:7/9
0 chr12 10829042 10829353 1000055 0 - Ya5ac2181; RIP_Alu_chr12_010_01 TTAATTTCCTGGCTTTCATGG TGAAATCATCAAACATGGCG SINE Alu Ya5 gggaaaatatgctgaaaaattgaaaagtaggtatattgaaacttacaaaattatttttaagtttaaattttttttaacatcacaaaaacataatttgtta
taattttaatttcctggctttcatggaagcaaatacatcataatatttttaagatgtctttctctgattgtcttgttttcagttaagagaattgccatgt
ttggattcctcaaggatccagaactagaaataccatttgacccagtgatcccattactgggtatatacccaaaggattataaatcatgctactataaaga
cacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgattgactggattaagaaaatgtGGCACATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAGTGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCTGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
AAAGAAAATGTGGGCACATAtacaccatggaatacgatgcacgcataaaaaaggatgagttcgtgtcctttgtagcaacatggatgaagctggaaaccat
tattctgagcaaactatcgcaaggacagaaaaccgaacactgcatgttctcattcataggtgggaattgaacaatgagaagacttggacacagagtgagg
aacatcacacactagggcctgttgtagggtggggggagtggggagggatagcattaggagaaatacctaacgtaaatgttgagttaatgagtgcagcaaa
ccaacacggcacatgtatacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaatttaaaagaaaatgatcacagaatgctattcta
aaatatgtacat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1173 853 NA intergenic
0 chr12 22988831 22989146 1000056 0 + Ya5ac2182; RIP_Alu_chr12_022_01 GCTTCCCCAGTGAAATGAAA TCCCTGAGGTCATTATTTCCA SINE Alu Ya5 caaagtgctgggattacaggtatgagccatcgcacccatcctgcagttattttttatattgagcactgagcctgcctcatgaaattgattttagaaataa
gtgggatacattgtatagagagcaataactatacaatctgctaaaaactgttaaaaacttctctgtgtgtttgatagatgtaatgtgcactatgattagc
ctgctattctaatgtgtaaaccatagtttttaaatttgtttgtttgcttgtttgtttaaacattgcttccccagtgaaatgaaagttacttttactttga
gtcagtgtttagaaactgggtgtggataaatgaccttcaaaagtaaaacactggaaaaatgtataatgtttttacaatgcttttAATATTGTATATGCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATTGTATATGCACtgtcaactaatggaaataatgacctcagggatgtgtttatcttggttttagcccacttaaaatacatt
tagcctttagcttttccttaggcccaaaccacatcaaatgggccacacacagactcctgaggtcactaccactttatggtcattttaggaagaaaaggaa
agcaaactctctcttcatattacgttttaggcaaggaattctcacaggaagagtgaatatatattttttcctttctttctttttctacactaggtgacct
gctagtcccacttttcctaaaggtagatttttaagcctacaaaatgaatctttaaagccagtttcaagtgtacttcattgtgagtaagagaagcttcaga
atccaatattatctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 498 167 NA intergenic
0 chr12 76432803 76433110 1000057 0 - pAlu12-77841515; Ya5ac2205; RIP_Alu_chr12_076_01 CATTTGCACTCAAGTCCTTCAT TATTTTCCCAAGCGCAGTTC SINE Alu Ya5 ccccagaacctcccacagtgcctccgacttagtagataaattcagaaatgattgctcaatgactcaatctatcaatgtttatatctgaagtagagaacag
aagcaggtcccagagagttttcaaatggttacctagcccatgaaatcttcactaccaaaaagttgacagtcgttttttcagttttgttgtgaagtatctc
cagggatagggatccaccatgacctgctttatatcctgttcctatgaaaatcattgttatatttaagatgcctaatttataaattcagaattctattcct
cctttttaaggatttagcagatctacccagtaatatctgtgtaatgtttacatttgcactcaagtccttcatttaggcatacattAAAAATATTAAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATATTAAATATataagtcctttgactgtatattagaatagtgtaccaaaagtcaaaaatagttcctacagccagtagcctaactatat
acaataacacctccctcatctcatgaactgcgcttgggaaaatatcaagtcctcactcaagcactatcctggtgttatttagacacaattctggcatgca
tggcttaccgtcagaatcagcaaataaagattagctttctagaagtaggcacattgccagcagtaaggaataagagtagaaatgagaattcaaaaaaaga
cagctgtctggatccatttagtacatagtagagtggggctacatattctaatataccttgaggacagtgttgtgtcactcacggggcagtaaattaatac
atatctct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 494 171 NA intergenic
0 chr12 93193479 93193786 1000058 0 + Ya5ac2222; RIP_Alu_chr12_093_01 GTGTTAAGAGGCTGACCCCA GGATGGGTGGAAAAGAGGTA SINE Alu Ya5 tgctgagggtgatagtcactgatgggtgactgttgtcccacagatgatgcttttgtctctgaaatttatcatgaattatctgagaacaaggactatgtca
taacatctctctgacatcccagccctaatactaaatagggcaggagaacatgctggttaaatgggctttggtgggagtgtgggagccggagagatggcgc
ttccatcgaggtgtctcccccgatggggtacagtggctgagggcagacgctgtgatgtcacgctgtctgacatggcacaggcatctgctccccatcacag
agcagaggcccgcgtgcactttcccagcctgggggtggaggtgttaagaggctgaccccaagggccttgactgtacttacgccttAAGAAACTGCTGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAACTGCTGTTTgagcactaagtgttagcagcatgaaaaatgaacacatatcaatttatgtctgaatttactctcagaattccctgtgg
actctgtaaaatgccattttacctcttttccacccatccagctgtggaggcagtggcagatttacattattttacatccagttaagggtgttttttcttt
tggttatgtttttaaaaagaacatttattgcccataaaaaagtgtttttgttaaagacaatagtgcctttaggtagtaatagaatgctgtttcacaaata
tttataaaactattaaacaagctgagattgctgaagctccgattaaaaggtgcctcccattcatctttccctttagaaactgaagtagcttaactgcaat
tacccgcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 499 176 NA intron:PLXNC1:NM:005761:21/31
0 chr12 93868200 93868497 1000059 0 - Ya5ac2227; RIP_Alu_chr12_093_02 AATTTCCCCAGACATAGCCC TGAGAAGCAAACTGTAAGCCAA SINE Alu Ya5 atttgtggggaggtgagctccttccctaggaaaaagaatgcaaagttataaatataaaattaagtatgaaattgaatattttacttaaaatgggaaaaga
aattatagcatgttacaaagttttaaaagctgacaaatagtacaaaaatccagaaaaataatatctttattattggactactcaacactctctttacact
tttctgtttttgtaattgcatacctccatgtgcttcttcacatgcaatgatttcgtaatatcattttctagagatagagaattcagtcttccctatagca
tggttgaatactcttcctttaaaatatttatatattagaaaagattttcagcctcagaactggctattggtaagtcatgtaaatttttAAAATTGTTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATTGTTGCCaaatttgggaaactccacagaaaatttctttcatatatgaactgtaagacttcatgtacatttcaagttttctcacagagggactgatct
taagtattctgaattgatgaccttcattagccagtttgtcattggtaaccccattgaactggtggattatggtatcagtatttcatgttagataaaaaat
aaatagataatcaaacaatataaaagcctattctttgtttgaaagtcctttcttcctctaaatgagttagttactatactttgggtataatttgaaaaaa
aatatattttggcttacagtttgcttctcattgtcagaataatttccttccatccttccttccttccttcctttctctctctctgtctccctctctct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1150 840 NA intergenic
0 chr13 100704958 100705265 1000060 0 + Ya5_545; pAlu13-100743498; RIP_Alu_chr13_100_01 AACTGATTTGCCGCTTTGTT CAGGGGTACACTTATTCCCAAG SINE Alu Ya5 aaccccatctctactagaaatacaaaaattagctgggtgtgcctgttatcccagcttcttgggatgctaaggcaagagaaccactggaacttgggaggca
gaggttgcagggagccgagatggtgccactgcactctagcctgagcaacagagtgggactgtctcaaaaaaaaaaaaaaaaaaaaaaggagacaaaaaca
acaacaaaaaaaccccaaaacctagagtggaacaaattcagaatgcttaagtagttcaagagtacactgatggggtctatctggttgtttaagtcaacaa
aatcaccactacctagtttatttatttatttatttttccaggatttcaagttagtttttagctggttaactgatttgccgctttgttaaGAATGAATGAC
ATGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAA
AAAAAAAAGAATGAATGACatgttaaaagctgcattcatgtaatgtaccaatgtgatgaacttgggaataagtgtacccctgtgaaaccattaccatcaa
tgccattgacatatccaccacctctcaaagtttcctcccacaccctttcttattattattgtcaggggacaacaattattggacacataatatatactga
attccaccatccaatcctgtctgtctgttgttgaggttgtttttatttttaatattatataaaaaagaaaaaagacaaggatttaccaactacccctgga
ctctacaatacacttaaatagtaaccagtcaactctacaacattcaattatttgacattttgttggaatttcttaaggtatgaggataaatcatctacca
tacataaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 415 110 NA intron:NALCN:NM:052867:11/44
0 chr13 35336421 35336722 1000061 0 + Ya5ac2247; RIP_Alu_chr13_035_01 TAAGCTTCTGAAGGGCAGGA GTTTTTATTTCCATTTAGATAGCCA SINE Alu Ya5 aaaagtaaaatttaaatagcatgaataaaaagacttcaggatttctggagtaacatagaagtaagttttaaggctgggtgttcagaatggtgcttcgtca
tggtagatgctcattaactgagccatttgggttttccttctttcaaatgtttgcccttgcatctccagcacccaacgttgccggtccactatagattctc
aatgcatactgaatgaatgaatggttgttgccatgaatgtttctactctataagcttctgaagggcaggaaagtacattatctcatattggaattgaaag
gtgtgaggcactcattgggcctcagttatgtctgctaagggttccacagacagagattctaaatacagggtatcattctatgatAAAAAGTTGGCTATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGTTGGCTATCTaaatggaaataaaaactgtaaaacaaacaaaaaaactccatttttcttctctcttttttttttttttttggaatggggtctc
actctggcatccaagctggagtgcagtggtgtgatcatggctgactttagcctcaaactcctaggctcaagacttcatgtcacctcagcctcccaagtag
ctgggaccacaggtgtgcaccattacacccagctagtttttaaatttcttgtagacacaggtcttggtatgttgcctaggttggtctcaaactcctgagc
tcaaccagtcctcctgcctaggcctcccaaagtgttgggattaaaggtataagccaccatgcctggccccagagctttcccaaatccaagaaaagatcaa
aa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 484 166 NA intron:DCLK1:NM:004734:5/18
0 chr13 21953219 21953513 1000062 0 - Ya5ac2259; pAlu13-21985103; RIP_Alu_chr13_021_01 CCCGAAGTGCTCCATTAGAA CCATGCATAATGTTCAGGGC SINE Alu Ya5 atcacctcccatggggccccacctccaatactgggtattacaattcaacatgagatttggaggggacatccaaacctgatcaggtgccctgcctcctcac
taactcaaccccccttttccttttactgtcactagttggtttctttgggccattctctttagtaaaagggaattgaagatcacaccaggaagagactgta
gtaactggaactaagtgaacacataatatgtaaagtaaagcaaaggagatatttcagacagaatttgttaggacctaatgtggaaaagctgaagtaggac
aagagcctctctaagatggcatatatatggcttacttactaaactctatctttaattcccgaagtgctccattagaagtcctggattAAAAAAAAAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAaatagctcactagccctgaacattatgcatggtattgtattaggtaattcctcaaaattaaagattaaattccaacttacttttcaaagaat
aattatacctctgtcatattgattggtttacatgattgtcaagtgtaatatgtcatttaagttaattaaatatccatttctacttcatcatgcattttta
tcaattaaaggcattgtactttaatctccacaaatacacaactgttggattccataacaaggttcagttatgattttcatgtatgacttgcatttcagtc
ttccttactaaattgagagtactccaaaagaaaaaaaaaatttgtatttccaaaatccaagatgttagctaaaataatgtaatacttaatgaata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 383 75 NA intergenic
0 chr13 102807865 102808174 1000063 0 - pAlu13-102846400; 79718; Ya5ac2265; RIP_Alu_chr13_102_01 GGTGCCGAGCCTTATCATTA TGTTTTCTGTTCCCCCAGAC SINE Alu Ya5 tgcccaagatgcctggtcttaaaaatggccataagattttatctaaatctactgggttgtattaagatagtcagctctccccagaatgaagtttgcagta
ggtatgaacaaatcagttgccagtctattagagcacaggttgtctgatattctacccattctccagattcaggaccaatttgggagcaacctgagtccaa
ggtgcttagtttccagtaccagctcagtcctaagccacatctggttctagattagctaaagaaggtaaagtccatacccagttgttgaggggaacaaact
aaataagaagagtgaatgcacatttatgaaagtgtaaatgaacgattctgttatgaacacaaacatgaccagggtgccgagccttatcattAAGAAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAATAAAT
AAATAAATAAAAGAAACTGaattcatgactcccagtctgggggaacagaaaacattactgagctggagcacattggcccattcagttctgaaatgcatgt
ccaacaggtaggtggagccctgagcaagaattgctactgtgttgaagtcacagagccagagtgcttccatgtagccagagaaaatcttccagagtaagtc
attgctgtggtgagccattgttgggagaggttgtgggtacgtgagacatacaaacatttgtgaatccaccaaaaagaggttaatttttattcctaaaatg
gatagacaggttatgttagaattccttctttaccactgaaggggacaccagatactaagcttgcaacatagtaaaaccctgtctctaaaaaattatttaa
aaattggttg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 382 63 NA intergenic
0 chr13 102942392 102942662 1000064 0 - Ya5ac2300; pAlu13-102980933; RIP_Alu_chr13_102_02 AAGCTCCAAAGCAAGCACTA TGTTTCTTAAGGGGGAAGCC SINE Alu Ya5 ggatctatgaaagaaaaacataagcccaggaatgtaattacattggcaaataagagggtttttttcttatttaaatatcttcaacaggtttaatgggtag
gtaataggttgataggtgcagcaaactaccatggcacacatttacctatgtagcaaacctacacatcctgcacatgtactccagaacttaaaataaaata
caattaaattaaattaaaaaataaatatctttaaaagacatataataacaaagtactatggggtttatagtatacctaaaagtaaaatgtgtaacaaaaa
catcacaaagttatgtgaagtggcataatatcctttgaagctagactgtgtactataagctccaaagcaagcactataattacaaaacAAAAAAGGAATG
GCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTA
GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAATGgaagtggaaatttaaaa
atattttgaaccaaagatgaaatgacaacatattaaaatgtgagcagtacagcttaagcagttattacagaaaaatttatagcactaaacaacaatatta
ggaagaagaaacattgaataatctcggcttcccccttaagaaacaaaaaagaaaggtaaactaaatccaaggtaagcaaaaaactaaaataagtcatagt
aattaataaaatgaaaatacacaaatatatactctgtatattgtacatattatatatacataatatatatttactaggtattttaataaaaaaacacagc
tctattttcaaaatttaagaaatacattttaaaaaatctccagcctaataaatttaaaacaaagattactt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 489 206 NA intergenic
0 chr13 30073598 30073920 1000065 0 + Ya5ac2268; Ya5-MLS12; pAlu13-30105500; RIP_Alu_chr13_030_01 GGGCCTGTGGTCAAACTACT CAGTTCTGCTGCATTCTACCA SINE Alu Ya5 cactgatcaatgtactttgtaatctccgccacccttaagaaggttctttataatttcccccacccttaagaaggttctttgtaattctccccacccttga
gaatgtaatttgtgagatccaccgctgcccgcaaaacattgctcttaacttcaccacctatcccaaaacctataagaagtaatgataatccaccaccctt
tgctgactctcttttctgactcagcccgcctgcacccaggtgaaataaatagccatgttgctcacacaaagcctgtttggtgtctcttcacatggacacg
catgaaagaaaccctacctggttctgtgtcttacctgttgggggcctgtggtcaaactactagtacggagttttagtgtcctcactttAAAAATGAGGGT
TGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATGAGGGTtgtaaggtaactacctactttttatagcattgtagtgaagttgaaatgaattaatccacatatat
tatagtgtggtagaatgcagcagaactgatgatgtatgacttctaagactagtccttaagagacctgcagtttttgcttttgccctcttggaacactcct
gttgccatgttaagaaaaactctggggagactatgaaggaagagagcatactcggggcaggggggtgaacaggacgtgcacatgtacgagcgtacaagcc
aggtgacaccagtaccacagcctcagacatgtcaccggggataccagcaccacagcctcagacatgtcaccggggacaccagcaccacagcctcagacat
gtcaccggggacaccagcaccac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 487 152 NA intergenic
0 chr13 23608968 23609268 1000066 0 - Ya5ac2272; RIP_Alu_chr13_023_01 GCCCAAAGGGGTGAAATAAT TTTGGATGCAACAAGTCTGAA SINE Alu Ya5 cctcagcctcccaaagtgctggatcacatgggtgtgagccactgcccatggacttagttacttcttgatattatgtaagcagaatgtaaagaaggttgta
agtatttttagttttctgtatattatggtgttttgacatcttaaaaatcctttctggctgaagagagactgcccctttctggactagtaaattcttagag
acagcaaaggcccagccaggagcaggcccctggcaaacccagggctggagcccatgtcttcttctttcagttcagtggcctttcaccccaactgaagccc
aaaggggtgaaataattttgccaagttcacacagtgactaccagatgtcaacacctgtctctaatgcatgtgaccttatctctcataAAAATAAAGAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA
TAAAATAAAGAACAtatttaatcaaatttgcatccacaattcagacttgttgcatccaaatccatttatccattcacactccttaaatatttcctgtggg
cctactatgtgccagtcttgtgctggggcctatctctcagagcccaataggcccagagaatccacaacgttggtgaacatcgtggccccaaagctgagcc
catcaaattagctttggaaagtctatatacagaattcatctgacagttttttctgagcatttcctagttctctttctttcctttctttccctccctccct
ctctttttctctctccctctctctcactttctttctttcttctctttctttttttgactaagtttcactcttgttacccaggctggagtgcaatggcacg
a UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 464 150 NA intergenic
0 chr13 43278323 43278652 1000067 0 - Ya5ac2278; RIP_Alu_chr13_043_01 CCACCTGTGGGCATCTAAGT GGGCACCTCCTCTCTCTTTC SINE Alu Ya5 tggggaaatcccatctctactaaaaatacaaaaaaaaaaaaaaaaaagctgggcatggtggtgcatgctggtagtcccaactacttgggaggctgaggta
ggagaattgcttgaacctggggagcggaggttgcagtgagctgagattgcaccactgcactccagcctggatgacagagtgagactccgtctcaaaaaaa
aataaataaataaataaataaagaagaagcactaagtctgaagacatagttggtttggatgctacattacaatatatgacaaacaacatttcatatttcc
agattttatagaccacctgtgggcatctaagttcattaaaagctaatgttttgggagaggttagctgccatcaaccacccttatcAAAAATGGGATAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGGATAAATgaaaggaatcagagaattggtagtgaaagagagaggaggtgcccacagcaggagg
tggagtatcaagaggaaggggagggtatatgcagaagacagtaggagacagcaaacatgttctgcctgcttcacagtcttctggggactgtctttgcagg
ggtaatcctggagtttccctagagctgcggcttaccaagcctggctgtacattggtgcagcctgaggaggtactcagtgaatcgcaatcactgagatggg
acccaggaagcagaacttttcaaagtgccacaactggcgctgatgtgcagggctacatggctctagaactagtccttgctggaaaggcctgggataaagc
atcgtaagtcttcccactggcagtttgatc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 477 132 NA intergenic
0 chr13 48271233 48271550 1000068 0 - Ya5ac2282; RIP_Alu_chr13_048_01 GCTGTTATATGAAGTGTTCACCTTG TGGAAAGCAGAGAAATGCTG SINE Alu Ya5 tgtggctcacgcctgtaatcccaacactttgggaggctgagacaggtggatctcttgaggccaagagttcgaggccagcctagccaacatggcgaaaccc
catctctactaaaaatacaaaaattagccaggcttcgtggcacgtgcctgtaatcccagctactcaggaggttgaggcaggaggattgcttgaacctggg
aggcagatattgcagtgagccgagatcacgccactgaactccagcttgggtgacagagtgagaccccatctcaaaaaaaaaaaagttttatttcatgatt
tgggtgctgttatatgaagtgttcaccttgtacttatgatttgtacacttctgtctatttacataatacatcaatcaaaagtttactTAAAAATAAAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATAGC
GTGAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAATAAATA
AATAAAAAAAAATAAAAATAAAAATAAAAAAatcagtatttgcagatgttttaaagagtcaaatagttctacaaggtttaaaacagcatttctctgcttt
ccattccttcaccctcaccccataatatctatctctccagagataatctctttcaacttctaaaaagtcagttcttttgcttttgacccttatatctctg
aataacatgcttattttcatgtcttaatttttcagttttaagaattctttattgacttccaatatggaagctggaaacgtagctctttctcctttgccca
ctcactgtgcacagaaatgtcttccctacctccatatcctccctatgtaaattattcctgattttggttttatttgtgttcaatgtgtataagatatttt
ctatatcagagctattta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 498 167 NA intergenic
0 chr13 103959221 103959524 1000069 0 + Ya5-MLS22; 239088; Ya5ac2294; RIP_Alu_chr13_103_01 CGACTCTGGTGGAGAAAAGC TGTTGCCAGACCTTGTATGC SINE Alu Ya5 ttgcctagcccaatgttcaaaagggtttttttctaggtttccttctaggatttttagtttcaggtcttacatttaagtctctaatccacctttggttaat
tttcatatgtggtgagtaatagaggtttagttatgtacctaagccctggagattatgaacctcacataaatatgagactcaaatgcctaataaaaatagt
aaacacattgactcaggagaaactagaggaaaagaaaatgatttatactcaaaaaccagatttagccatgtaccaagaatatattgtaaaaaacttttca
tttaattaaaattaaaaaataaaattatctagaggaataatttttactgaatttttacccgactctggtggagaaaagcctaaataatttAAAAGATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGATCTTggatgtgtagcaacacaacaaattatgtattcctgtttctagattgtacatcggagaaaataattttgttctatgccttgtatgta
aggcatacaaggtctggcaacaaagcaaaatattcagataagaaggcacatgatatattctgccttttatggtaggttttacttaactttagcaaaactg
gcttcactatttaatctactttctttgttttttaatctgatgccaatttcaatttacagtaaaagggaaaaccttgggcaaattgcctctgttgggcagc
atataggtatcattccataactgattatctttggttatttatctcaactggttagaggaagtttttaataatgtttaaaggggctacagatagataaact
gtaa UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 464 150 NA intergenic
0 chr13 63346600 63346899 1000070 0 - Ya5ac2296; RIP_Alu_chr13_063_01 GAGAAGTCTCACCAGGGCAG TCAATGTAACCGTGTTCCCA SINE Alu Ya5 agctaagcctcagagacaaatgtaaatcctatagaaaccaaattactcaaatcagaaaaatacttaattaaaaaggacttttgtccaaaaaggacaaaaa
gtctcttatcatttcaggagggaagtaaagccctttagtaaagatggcctcataactaaacaaattccaaataaaatgaaaaagcgtctaccaaagaaag
gaaggttcagcttgagaagtctcaccagggcagaaaaggcaagccatggaaccagagagttcaaagggctcaagtgagtactcaacaccagtttcaagaa
ttactgattctttccaataatgaactttttttggttccactactggacatcgtttaggtcaactaaataacagagagagtctctctAAAAGAAAATAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCCAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAAATAACAtttatttggaaataaagcattgcaaatagaatatgtctgccatagtaaaccaggtgtgtgttccaggaggtaaaggaagacaaaag
cttttcaggaatgtataagaaagattacataattgttttgagataattattatcttttgctacaagggcgatcccagctcaaggctgggcaggaagttgc
tgggcagatgtccttgtagaagcatttttaaaatttttggatgtagaagtttattttttgcagtctttccttatagtttttgttatcaggcatgtatgca
taagtattctctcttcatagctttccctagctgtatttatcagggtgtggatttttttcagcacgagttactccattttgattctaaaatttttcacagg
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 955 641 NA intergenic
0 chr13 38926482 38926791 1000071 0 + Ya5ac2305; RIP_Alu_chr13_038_01 TTCTGAGTTGGTGACACTCCA CTTACCCAGGCATCCTTTGA SINE Alu Ya5 gggttttgagtgtatacgtggacttcctaagatacacttcgattgagttcttttattgcatcccctaggcaaatgcaattgatttcagaattattgattg
ttttggatgttccaacccagtttcccttcatacttggggataatcaagagctgatttctgattctcaagaaaaatggagaatttaaggaatattagatct
caaactatcggtataatcttctaatttgtctcattataaagtattctatttctataggacaggttaataatccagaaaaatgaaactaagatgatcaaaa
cctgtagttaatactttaaaatacaatccaacaccatttaatcttctgagttggtgacactccaatttcttctctctaacgtttccttAAGAGTTGTAAT
TGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGTTGTAATcaaaggatgcctgggtaagagctgggtttggttttggtacttaggtcttttggtaattccattttagcaccactgaat
tatcattagtgctttaaagagctgccttttgtggatagaatgaattattatacatattcatcatttttgtcttcctactgatacatttaaggagtggaga
tacaatattttcatccaataggtcacaatgcatataattgctgacattttaaatgcatctggaaaaataaatgttactatattattgtagattatagagt
gtccttcacttttttacttttattatttccactttggagattctgtcaataaaagtcaagtgccattccaccctgtgagggtacagggagaagaagctgt
ctttcaatca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 398 76 NA intron:LHFP:NM:005780:2/4
0 chr13 78979409 78979709 1000072 0 - Ya5ac2323; RIP_Alu_chr13_078_01 CACCCATGTGTCCTTGAAAA CCATGGATTTTCTGTTTCTGTG SINE Alu Ya5 ggcatacatgtaagtattcaaagaaaagcagaaaaacattcacaaaaatgataaatatcaacttcaggataatgttaaagggattaagagatgaggaaaa
gcatagaatgtaaaactttatttcatttcttaaaaaaaaaaaagttcaagatctcaaacaaatacagcaagatgttaacatctattatgtccacggtgga
tatagaactatcttttactttatgtttgaagtgtttcatagttttaatatttaaattttaaaaaaagttgatcctgacaagttgtattccacgaatagac
atttttaaacatgaaagaagacagaatacacagcacccatgtgtccttgaaaaagcaactaccccatgatgaaaacaagacaactAAAAACTCAATCAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAACTCAATCAGAacaaaaaacacagaaacagaaaatccatggaaaagatataatggtaagcactgaatccatttaaatatagaactaaggttaaac
atagagctaaagactaacttctggtaaacagaaagcaaatattatatgccctaaaaaagcaaaaatacaacataaaattcagaactgaagaaagagatga
caaaacgtatgaacagcactcaacttcatctttcatggcagggatttcatatctcatctaaattttaaacatgcagttttaaaaaatactccgatttctt
actgttttttataaactattttcccaattttagtgaactcttacagaacctaagatttttgtggcaaagaaacctttacctagagttcaacatttaccta
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 413 97 NA intron:NDFIP2:NM:001161407:1/8
0 chr13 83377043 83377343 1000073 0 - Ya5ac2330; RIP_Alu_chr13_083_01 TTCACAATGCAAGATAAGAAAAAGA TGACTGGTAAGTATGGCAAGGTT SINE Alu Ya5 atttgcagttaatgttttaattttctgtaacttttcaaatttctgacttaaagctgttcataatgccttttcaatcttgatcttaaatttcttttattac
tgcccaacagaacatttttgagcagatagtaatttctattgatttctaaaataaactacaatttgattacagttacaagtagagtttagtggtttcaact
gctaagaaacataagctaacttttatatatctatgttaccatataaactacatactatatgacagtatgacactatggtcatatacctttatacttatat
ataaatatatacctatagaatatacattgtatacaatacacatatacattgtgtatgtgtatgtgtattcacaatgcaagatAAGAAAAAGATTAGTGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAAAGATTAGTGACattaaaatgacatttcaaatgctacaataatgatggagttgaaacatataaattaaaccttgccatacttaccagtcacag
tgttacattttatgtaccccataaacagattcttttgaaaattcagtattaattttaattaaactttcagtgtttgtcgaattccattttgttcctattt
ttcttttatagatgacctaatttcagaagctgcatttgtgctaattagtttcattaattcactattcacttacaacatgtggctataatgtatatgtgtg
tatgtatgtatatctttatatatgtgaatatatattcatttataacaaactttttagtaagggactaatgattttattattcaccttttaatatctgagc
a UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 430 112 NA intergenic
0 chr13 85953194 85953490 1000074 0 + 1763; Ya5ac2333; RIP_Alu_chr13_085_01 TTAATGGAGCATCGGAGACC ATTCTGCTTTGGCACTTTGC SINE Alu Ya5 gcctcagagtctgttttccaggaagtcagtgaagtacaaaagtacactgaggaaagaaaagtacctagactttttgaggacaattaagataaagactctg
tgctaactgataactgttgatccaaatgctgaataattttaattcttacttaagcactaaaagggaatacaacacattctatacattccactggctctct
catttctggatctcacaggtagagaagtgagacagatatgtcttttttttttttaatggagcatcggagacctatataataaacttctattgtgatagac
ttagtgactttggcaagtcttataactgactcatatgagcttactgtattcactagactgtatcatatttttcttattaaccagtattaatcAAAAAAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGCaaagtgccaaagcagaataaaaactatatgtattgacattcatacgaaatgtatttatgtatgtcataatataaatccatgcaaaatgacatttt
caccataaaggtcacagtaaaaagaaaaataaaatgttgggccaagcacagtgactcatgcctgtaatgtaagccctttgggaggctgaggttggtggat
tgcttgagcccaggagtttgagaccagcctgtgcagcatagtgaaaccccatctctacaaaactacaaaaaattagcctggcatggtggcatgcacctgt
agtccagcaacccaagagtctgagctccagaggtcaaagctgcagtgagctgtgactgcaccattgcactccagcctgtgtgacaaatgagatcttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 471 166 NA intergenic
0 chr14 58615067 58615358 1000075 0 + Ya5NBC333; 5330; Ya5ac2388; RIP_Alu_chr14_058_01 TCGGTTTGTTCAAGATGCAA CCCAGACTGGTGGAGAAGAG SINE Alu Ya5 tttgagttttctaaaagaactctaaacttagaactctaaatttgtagatttaatataaaccatttgggcttttaaatggcatttgaaggcctccatgctt
taaaaactgtttggaaaagataccttccaagcaatcaattaaaatacttgagaatataaagcttccatttataaaaggagtgaaaacaaatattttttcc
aaacttctgtttgagagaatacgtataaatgttttttatgaaaaactttttaaaatgtaacatttttcagtttaaaaataagttcctaattgattcatct
aagacattattataaattaaactcttaaatttaaaaaaaaaattttataccaacaaatcaaaggcaaatataaattaaactttttAAATAATACTTTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAATA
CTTTTAGttttagatacttttgtttctcagtgtaaatttataccaaaaaaatttaattcccatgtatttgggaatgatagcatgccaaagtgcattaaga
tatcttacctatcttacttatctaatttggaatataggtcaaggtgcatgtaacagggctccaaaataacagtgttttgaattcgccagaaattatttct
ctcttctccaccagtctgggagtaaatagtgtgatactagcttaggacatctaccccatgaggtcattcagggacccaggctccttctcttattgttgca
ccatctctagtatgctccactgattctcatggtccatagtagctcaccacctcatccacatcatccacagttaaaacaaggtcgaaaaaatg UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 588 281 NA intergenic
0 chr14 82089370 82089635 1000076 0 - 13644; Ya5JW580; RIP_Alu_chr14_082_01 GCAACTCAGAGACTTTACTGTGC TCCACTTTCACTCTCTGGACATT SINE Alu Ya5 aaatagatactttaaaaatatttcacagtactgtcccaaactgaacatatgcatactccatgacccaatacttttaattctaggtaaatactcaacaaaa
acatggatgtatgttcaccaaaagtcatttgtaaaaatgccgataccagcaagccttgaaaaaatgcaaacatctgtcaagagtagaatgaataataaat
tgtgatgtattcattaaaccaaatctgttcagcagttaaaacaaataaactgcagctctacctattgtataaaaatagggatgaatctcacgagcatact
atgtccactttcactctctggacatttataataaagtgaaaaaaacacagaagaaatgcaaaatatcctacagtttcacaaagttAAGAAGTTGATTACT
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA
TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAGTTGATTACTttgggacactaatatatta
atttgcacagtaaagtctctgagttgctgtgtagtagttttctaggcctgccatgacaaagcaccacagactgggtggcttgcacaactgaaatctactt
tctcagaatatggaagatagaagtctgagattaagatgtcaacacgattgtttcttctgaggcctctctccttggtttgcatgtgattgtcttcgccctg
tcttcacatgatcttcctcctgtatgtatctgtgtcctaatttcttagaaggacagaagacatgttgtagtagggcccacctcaatagcctcctttttaa
cttcattacctttttagagatcctacagtacagttgctttctgaagtacctgggtttaagtcttca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 424 144 NA intergenic
0 chr14 99914767 99915083 1000077 0 + Ya5ac2360; pAlu14-98834954; RIP_Alu_chr14_099_01 TAGACGGACACCTCAGGACC CAGCCCTTCCCTCTTTTCTC SINE Alu Ya5 ctcctgcctcagcctcccgagtagctgggattacaggcgtgtgccaccacgcccggctaatttttgtattttagtagagacagggtttcaccatgttggc
caggctggtctcgaactcgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactatgccctgcccagaaagatt
ttttttaacaagtagaaattcattgcagtgtgaatctgtgtgttgggagtgaaatgggtggatttggatcatgccctcagaattgctccctgcacacttg
ggtagacggacacctcaggaccttagccttgtgctgtgggcctgtctgtccagctggctgctacagagatgggatacctgggggAAGAATGTTCCAGGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATGTTCCAGGCAgagagaaaagagggaagggctggagcacagggaaagggtgcaggggaaagtggcaggcctttcccac
catggatcctggacgtcttttgatttcagtattttcagacctaccctcgttcatgatgatgagcatatgttctcacttgttgctaataagcagtgcggca
ggttttctttatacatttatcttcatggatttatacatctagcaaacatatgctagtatttgtgtaggataaagttctacagtggggttgctggggtgaa
aatgatgtgtttaaacttgtaacacatatgaccaaaatggaccttccaaaggcatttttaaagtcctgtctctttctctgtaggcattgtctcttcaggt
cttctttttttttcttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 453 126 NA intron:WDR25:NM:024515:1/7
0 chr14 64596912 64597181 1000078 0 + Ya5ac2366; RIP_Alu_chr14_064_01 TTTGGTATGGGTACAATTTTTGC ACCCAGGTCCTCTAGTCGGT SINE Alu Ya5 caggctggtcttgaactcctgacctcgggtgatccatccacctcggcctcccaaaatgctgggattacaggcatgagccaccgcgtccggcccccttttt
cttgattataaatgtaaatacatgtttattgttttaataattgggatacataaaatataaaaaagaaaatgaaaaacaatcatatcactattaatatttt
ggtatgggtacaatttttgctatttatatacatcacaggtacaaatacactttttaaaaagtttgagaccaggtgtggtggctcacacctgtaaccccag
cactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagccggaccaacatggtgaaaccctgtctctactAAAAATACAAAAAT
AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC
AAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTG
AGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATACAAAAATtacccaggcgtggtgg
ctcacacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacacaggaggcagaggttgcagtgagctaagatcgtgtcaatgcact
ccagcctgggcaacagagcaagactctctcaaaaaaaaaaaaaaaaaaaaaaaaacagtttgagatagtattgtacatactgttttctcacataatatgt
tgtaagtatttgcctgtatcgttaaatatttaaatgcgtgtttataatggctgtatattaacctgtgtcccatgtactagatagttttagcaaatacacc
atttttgaacctttgggctttgtgtgtatctctgattccttatactaaattcttagaagtgcctttcatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1068 802 NA intron:FNTB:NM:002028:11/12
0 chr14 25075653 25075887 1000079 0 - Ya5ac2369; RIP_Alu_chr14_025_01 TAAGGGTGAATGGGAACCAG CAATCCAATACCACAGGGCT SINE Alu Ya5 agtgaactagagagcattaaaaattaagaaaattaaagttcttctttgtttcctccttttctggaaaatttaatatgaaagccgttcagttggaccatct
gggatagtaatgagggaagccacgatggcccaaagctatgcattagaggccttggaaataagaaaggggaaggtgggggagagcgatcatcatgggcatc
agagcctgagtggggtgaggagggtgtccaggtgcaggatctggaacatagcaaaatgtcacatactgagcaaggtaagcagtgcattacacacagaggg
attgatcaaaagattgactatgtaagggtgaatgggaaccaggttcctcactaatgaggaaaggagttacaaagaaagaacactAGAAAAAGCCCTGTGG
GGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGTCTGTAGTCCCAGCTA
CTTGTGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG
ACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAGAAAGAAAAAGCCCTGTGGtattggattggatgcatccatgtgaaatcagattttttcttatacagat
aaatagatgtagtaataaatacagattgagtcaattgccaacatgatgtccccatcaccctaggataatttagtgtgcattcctttcctacaaagaagga
tattctcctacctaagccaatccagaaatgcaggtttttccttttttaggtgtctgcctggctgccactgccacctcagcagtacatgtctgtcactgga
gctggttttagggcaggccaggagagagaaaagagggggagaaacaacaacaaagatcttccccattctctcaggctcataggaatccccattcctagtc
ctctggtcagaaagacaggattcccccaaaaattt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 341 90 NA intergenic
0 chr14 51664432 51664730 1000080 0 + Ya5ac2376; RIP_Alu_chr14_051_01 GCTCTTCATGGGTTCCTTCA ACAGAGCCTTCCCTCTGTGA SINE Alu Ya5 aacagccttaggaactacccttggtaaggaatcagaagatcatgggtctacttcagacggactctaccaaatttctctcagcatggccttggacaagttg
cttatttctattcatcttcctcatcagcaaaacagactcttcatgaaagggctcttcatgggttccttcaaggacataggtgtgttaaagcaaaataaat
atagcctgagaaggactccattcttctatatttgagtccttggggatgaactgtaacctagcttaataaacaagattgaaaacctaacttaggagtatgc
atctgtaacaatagctgagtcttggccaatcccagcagccatacttcaactactcacacactgatgagtgttcagactgtgttcAAAAAAGGCAAATGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGGCAAATGCCaacctgcaatcaatccagctgttctgtgcgtcacttccggtttctgtaggtcatttccctttttttgtctataaatcttcttcca
ccacgtggttgtgctggagtctctgtgaatctgctgtgactctgggtgctgccccattcgcaaattgttcattgctcaattaaacttctttaaatttaat
tcagatgaactttttcttttatcaggtgtcacctaacatacaagtttttggactaattctgcaaacatatggtatgaattaaagcagtggttctcaaagt
gtagttcccagaccggtagcatctgttgggaacgtgatagaaatgcacattcccaggccccatccttaacgaactgaatcagaaactctggggcttttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1173 858 NA intergenic
0 chr14 51826549 51826863 1000081 0 + pAlu14-50746736; 79667; Ya5ac2380; RIP_Alu_chr14_051_02 GTGATCACGCTGCTTTATGC GTGATACAACTCACTATCTGGC SINE Alu Ya5 tttttataaaataagcagaatatgtttatgctggactgtgtttcagcataggctgtgatacagacctacaattctttggtgatgctaaaggcaactcaag
aaagacaaggaatgatccttcaaagcagctcaaacaggttcaacaagaggcttgagtggaagatacctgccatatgtaaaacggtactgtgggcagagaa
aatgaacagtgtttcaaacccaagccccaggctggaaatcataaggacagaatctctgactgttaaatgtagatttgtgatcacgctgctttatgcatgc
aagactctgtatactgccattcaggatgagtaccatcaggattctatttctttgataaagatgaacgattctccaaaacaacacAAGAGAAGCCAGATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAGAAGCCAGATAGtgagttgtatcactgtagtaggcagcttctaaaagagctaccaatgatcccggtcttcaggtctccagg
tattcatgcccttgggtaattctttccctgcaagcatgatctggacctacagacttgcttctaaggtgtggaatacagcagaaaaacatctggaaagtta
cacctttccaaataagccttggttgcttgctcgctccgatggaaaccagctgctgtgctgtgagctgtattgtggagaggctcatatggcagaaaatgga
gggaggccactggccaacagccagcaaggaatagaagctcttagtcccacaacccaggaggaaccaaatcctccaacaaccacatgaatgttcttggaag
tggatccttccttcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 468 141 NA intergenic
0 chr14 25216955 25217297 1000082 0 - Ya5ac2389; RIP_Alu_chr14_025_02 TCTTTTCCTCAAAACAAATTCC TGCGTATTAGTGAAATCATGCAA SINE Alu Ya5 tctaacctgggacagatatactcatcaaaaattctggggccacaactcacatcttcacaaccagagataaaaaaatctttactgctgcactaatttctag
ggaagagtttttgtttgtttgctttctattttctcttcttctagaaattagtcccagtcctggaccacttgatatagtaataggaataaggtagattgtg
gaatgtgtcgattgcttacaccaatggagcaggcaatatgttagtaggcttcccaaaatcagatggttgaccaggatacaaattacccaagtattcacct
gagaaagagagaaatgaatgctgataaagcaaaataaatgtcctttgacatatcttttcctcaaaacaaattcctatatcagattaTAAACCTTAAATTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA
AATAAATTAAAAAAAAAAATAAAAAATAAAAAAAATAAATAAATAAACCTTAAATTCatagacatgatttaatagtaatgtttcaatatgatgacatcta
tttaatactagaagaatttcagtctaattttgcatgatttcactaatacgcattttagttaaaatgatataaccagagtcatggttaaggctcagttgtg
ttcccccaaaatttatatgttgacatccttgctgtgtctttaatataaagacctgaatattgtcagtagtataatgtaattatccaaatcccaccgggaa
aacatttgggaaaaaataattgtttttttccattgatttctcaatatgcatattcctaatctcttacatctatgcattaccactgattttaaaaactacc
atttttatcacaggctgcctccacatcaccatttttcttccat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 500 168 NA intergenic
0 chr14 65880398 65880694 1000083 0 - 9480; Ya5ac2390; RIP_Alu_chr14_065_01 CTCAAATGTTTGCAAAACCC TTCCCCTGATTGAATTTTGG SINE Alu Ya5 cgggtcttcggggtttaataacagcagtaacatactataccttttttccaaaatgatgcccaaatgatgtataaactttttgtgatgtaattaccaccca
tcaatcacttcatttctgaaatatggtggcttctgatgagatgagattgctttccacattctcattagtttacgaaggaaagagaaaaaaatcttgcctc
tgttagaaaagcaggtaaggatagaaaggtaatttggttacatattacacaaaaactgggtaagaaaggaaaaataatgtcattatacataggctcaaat
gtttgcaaaacccttttacatatatagttaagtttaatcctacagatctatgttttggtagcagtggatttatgcaaatcattttAAAAAATGTCCCCAA
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATGTCCCCAAacgtaaatctagtggtttatatcaacatcccaaaattcaatcaggggaagtttctatagcctttctatatttaataaggcatttggca
tgtttttcatagattaaaaatgctaataatcaatataccaaaaatagatattcttataatgtttgatgagtcataattattgataggtaaacgtgttgaa
attgattattgcaacattaccctatctgttgctaacttatcctaaccctagatagatagacagacagatagggttattgctctctctctctctctctcta
tatatatgtatgatatatatataagatgtatatatgatatatataagatatatatatatatctaaggctgagaaggagccatgaggaacagtaagtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 468 172 NA intergenic
0 chr14 86625655 86625960 1000084 0 + Ya5ac2410; Ya5_432; RIP_Alu_chr14_086_01 CCCCAAACCAATCAAGTAGG GGCTTTTCCACTTCATGACAA SINE Alu Ya5 gttaatgtattatggcaattctaaggtgtaattatcttttaaaaatatatttttggttctgaaagatgcacatacatagtaatacaaagagttattagag
actttttatgttctctgcatcgttctaagtactcttcattagcttgtttagttctcaatacaactctgtgaaatagagactattatttattcatattttt
tggatgacagaatggagagacaggagatttaatatatggccagggtcataaagccagtaagtgatagaaccggcatttgaacccaacccaggtattctgg
ctccagaatccatctttttattctctacatttaatagattagtcatataaatgttgggcttttccacttcatgacaatgagatttAAAAAACTAATGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACTAATGGTCagccatataactgacatgtcctacttgattggtttggggtgtgaattaaatcacatgtcttttaattaccaactaccat
aactcaacgcccttatcagaccacagaaagacatccttcctttttctctccaagtcaactccattccctaaggatgcatactcatacaaatatcagtctt
gatcagggttcccttttgagctgaaataagggaaggagactcagtgctactaaaatccccaccaggagctggttatttcagaacagaagtcgtagcttat
cctgctaccactgtgaaaaaaactgtgtgtcaaaactgaagaaccgtggccattgacaaggcgtttatcatggtggtaccaagtgagaacctactaggac
caactg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 472 151 NA intergenic
0 chr15 37054309 37054650 1000085 0 - Ya5ac2434; RIP_Alu_chr15_037_01 GTGCCCCTAGGATGAAAACA TCTGTAGGCTGAAAAACATTGC SINE Alu Ya5 tcttagattcctctgcctcttgagtcactagagctatttgactaaggggtgggcaaaataaataccagtctatcatttggcatagaatctttgggggaac
atagttccgtgatgtgtaataaggtttgtgtgggataggtgagtagagttgctccttaatttaccatggcagagagagggaatcaaggacagagaggtgg
tggctggtataagagacctggaagaaagagtccctccttgaaggtgggcatggcgatgaaactgcccatagccaagtgtgtatttcgccactaagtaagg
ctaatggccaatttgggatgaggagataaaaatgatctataaagtgcccctaggatgaaaacatatggcctatttccaagcttaaaaaAATAAATTTTTC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAAATTTTTCttataggcccatataaatgatttagcaatgtttttcagcctacaga
tataaaatcattttaataatcacaatcagcctcatttttatcccatggattgggataatatagaatagtgcattcccaagtagcaaggataagtattgtt
ttgtcaaactgtcttagttgtgcatctgtgtgtgtgtgtgacacatggacgtgtgcacagagacacagagagtcggacaataatataaaatgcatttctt
actcaagttactctcagaaatgtttgaaagccacgcctctatggaaatcttcagttattttttgttttgttagccatggcatttgtaaacatttctgaaa
attttcctggcttacgtgtaaataccctatttgtttctaaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 457 105 NA intergenic
0 chr15 54151130 54151434 1000086 0 - Ya5ac2456; RIP_Alu_chr15_054_01 TGTTTTTCCTTGCCACACTG ACAGCCAGTCTCTTCGTGGT SINE Alu Ya5 ctttaccccacattatatacataatagtctcagtctattcttattttcaaggtagtattaagtgtccatatttatcaagccacattcaaggaaatcatgt
cttaactattttggatgttgcctctccttcaacttgtacatgaaactccagcagatttaatattggcatgcatcatctagtcaaacctctcacatgttct
tcaaatcaatcaaatttgggattctcaacattttctgtgtcaataaaaggaatggaattagtagattcgatgaataactgtttttccttgccacactgga
cttccagacgccatttggattgggtttagaagatggggaagtttagaagatgtttcttggcctgagtctcttaagaggagagatgtagAAGAGAGAGTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAGAGAGTAAgaccacgaagagactggctgttgactgcagggcaccaacagccgccttggtggtggcagtagctggatttggggcagtcgaag
tactctgggaggagttacttgaaattgttacaacagttgtttgattggaataaatctgcgtgggtaggagcagtgccagcagcagcagccccagcccaag
cctggccaccactgctctgcccacgtcccctccgtcggtgtgcagcgtgtctggctggatgctgggtgcttggagaactgctcgctccaggagggcgcgg
gcaaggacgataacaactctttatcagattttcttttgcaaatattttctcccattttgtggcttaccttttcgttctcttgacaatctttttcagataa
cagaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 459 142 NA intergenic
0 chr15 91316803 91317104 1000087 0 + pAlu15-91102932; Ya5ac2458; RIP_Alu_chr15_091_01 TCCCCAACCTTCCTACACTG GGTAGCCTAAAGGCATGCAA SINE Alu Ya5 ctttaagatgatttttaaaatatggatttgtagagattagggaagattaaaatttgtgtttcaacataattattggaatgtcttttaaatcttcagtccc
tcataaggagcagtgggaagttgattttattagacaaactgttgacaagacttcgagaaagggggaatcgagtgcttatcttctctcagatggtgagaat
gttggatatcctggctgaatacctaactattaaacactatcctttccaggtaaggtgatttcagtaattgctgtggggggaatcaatctctctctccgcc
tcccctccccaaccttcctacactgggttgtatgctttgcttgttaaagtaggaagtaagagttttcttgtttcaaagaagttaaggttAAGATTCCAGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGATTCCAGGagggtcttaatttttacttgcatgcctttaggctaccatatgaaagtggtcatgaggagacgattctttttttgaaggtgggtgggg
aggattagagaaagtcaaacggggcaagataaaaaaaggatgtcagatggcatcttattgcatgtgtatggtgaaagtagagaggaagtaagtgtgagct
caattccaggagcccaaatcctagaaggagagggcagtatcagacattccccccaaaagttgaccctggctgtgaggctgggaacatagcagaacactgc
tacttaaaaccttgctactccctgaagtaagtgatgatggcttcccctattttctgtggagttccttaactggagttactgtcttcacacagttatctcc
ta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 445 132 NA intron:CHD2:NM:001271:19/39
0 chr16 56848421 56848721 1000088 0 - Ya5NBC57; RIP_Alu_chr16_056_01 GACGTAAAGAGATGTTGTTAAGTGAAAAAT ACTGTAGGAGGTAAATGGAAAGTCAACAGA SINE Alu Ya5 attagtggggaaataaataggcactcttattatatttctgttattaaaaaaaaaaaaagactttatatttccaagcctgagtattggggggaaaaatgga
aaaaaaaataaagaagatattataaagtcaggtatggtgcctgtagtcccagctgctcaggaggctgaggcaagaggattgttggaggccagaagttcga
ggctgtagtgtgctatgattgcgaccgcgaatagccactgcactccagcctgagcaacgcagtgaggccccatctcttaaaaataaaaaaaaagatgtta
taaaatgaaaatatgtattgacgtaaagagatgttgttaagtgaaaaatacagtttacaaaataacatgatactatttttggaAGAAATTCATATATGCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAATTCATATATGCAtagaaaattatctaaactgtaggaggtaaatggaaagtcaacagaaattacctctgagtggtaaattgtgaatgttttcaaa
tgttcttttagcttaactgtatttttcaacattctacaacatagattgccttgaaataagaacacacacacacacatattactataaaaaataaaatgga
atggtatctctagccagactgcaaatcatcctagttcagactttttttctgaacaccaagaggcaaaagcattttcactggccggcctcaggctccagcc
ccatcatctccacatggtagaacatcaacccacctgaaatgctactttcaacacattgctctcctactcaagtatcctcagtggggtccagctttctaag
a UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 444 126 NA intron:CCDC113:NM:001142302:2/8
0 chr16 19413837 19414136 1000089 0 - Ya5-MLS63; Ya5_4532; RIP_Alu_chr16_019_01 ATGAAAAGGGCCCTGAAATC TTGCAGATGCCTAGGGAAATA SINE Alu Ya5 ttgcatgccaccgtgcctaattattaaaattttttaagggatggggtctcgctatgttggtcttaaactcctggcctcaagcagtcctcccctcccacct
cagcctcctgagtagctgcgattataaacgcacaaaaaataattgtaacaaaatgtttcattacctactgttttaagtatttaaaaacatagaaacaacc
caaatatccaaatatgtacagaattaaacatcgttcaagatatagtatttagtggtgggctgcgggggagggaagttatgatactatttgtataatatag
cctcacttttgtaataaacaagtaaattaaagtgttggtagatacaggtatgtttgcagatgcctagggaaatagatttgcAAGAATAGACACTGAAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAATAGACACTGAAGTAttcatagtgagatgagatttcagggcccttttcatctcagtgggatctacttctgtattatcggggttgtgaaaaacaagc
gtgcaagttccatgagggcgggggctttgttttgttcaccgtaaccccagcacctagaaaaagtacaggcatgaaaagtgctgaaaaaatgaatattact
tttttttgagacagagtgccactctgtcacctaggctggagtgcagtggcatgattttggctcaccgcaacctccacctcctgggttcaagcaattcttc
tgcctcagcctcccaagtagctggggctacaggtgcgtgccaccacacccagctaacttttgtatttttagtagagacagggtttcaccatattggccag
UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 401 80 NA intron:TMC5:NM:001105248:20/22
0 chr16 25531065 25531362 1000090 0 - Ya5_531; RIP_Alu_chr16_025_01 GCAAACACAGTGCCACAAGT TGGGGATGTGACCCAAGTAT SINE Alu Ya5 ttgatatccaaatatatcaagatttctcaaaaatcaatatgataaaacactaaaatttaatagaaaattgaacaaacaatataaagagacaatgcacaaa
atgaagaaatacaaattaaaagatgtggaaccttaatagtaatcccccaaaatgcaaaataaaacagtgatgtttcatggagtttattattccaatacaa
tagcaatgtttaggcaatacagttgagcatccctaatctgaaaatccaaaatctaaatgttccaaaatctgaaaatttatgagggcaaacacagtgccac
aagtggaaaataccacacctgacctcaagtgatgggtcacagtcaaaatgcagtcaaaatttgatttcattcacaaatttgttagaaaaaaTGTTGTGTA
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAGCCCGGGAGGCGGAGCTT
GCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATG
TTGTGTAaaactaccttcaggctatgcatataagacatatatgaaacataaatgaatttcatgtttatacttgggtcacatccccaagatatctcattat
gtatttgcaaatattctaaaatgtgaaatttgaaatccaaaacacttctagtctgaagcatttcagataatggatactcaacctgtattaagtgcctgtt
gatgagccttttcataagctgttggtagatcaaactggtaatttttccagagggcaattcaatagtaccttcatttaaaaaaaaaggaaaagaaaagagg
gacaggtgcggtggctcacacccataatcccagcactttgggagggtgaggagggcagatcacttgaggtcaggagtttgagaccagccgggccaaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 502 195 NA intergenic
0 chr16 16481312 16481598 1000091 0 - Ya5ac2480; RIP_Alu_chr16_016_01 AACCACACCAACCAAATGTGT GCATGTGAATTGACTGCTGAA SINE Alu Ya5 gtcccagctacttggcaggctgagatgggatgatcccttgaatctaggagttaaaggctgcagtgagctacgacttaccactgcactccagcccgggtaa
cagaacaagaggctgtctcaaaataataataataataataataataattattattattattattattattattattataatttcatttaaaagaaaaaga
aaacaagaacccagctttacaactacaaggtaagtcaccagcaactgccatgaggacccattgtctaaaccttttaatgtaaaataaaactacattagaa
accacaccaaccaaatgtgtagcttcttcagcctttccttatttttctaaggttgtacaaaactattgtatttacaaaaatggcacAAAAGTGAATTCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCGGGGAGGCGGAGCTTGCAGTGCGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGTGAAT
TCAGcagtcaattcacatgcatacttccctcacatcttcaacaacaaaaggtattctaactctaactctacagagcttggcagttttcaggagtactggg
gacggattttgcaggatatatctctgtattagtccattttcatgctgctgataaagacatacctgagactgggcaatttacaaaagaacaggtttattgg
acttacagttccacgtggctgtggaggcctcacaaacatggtggaaggcaaggaggagcaagtcacatctgatgtggatggcagcaggcaaaaagagctt
gtgcagggaaattcccatttttaaaaaccatcagatctcataagactaattcactatcacgagaacagcacgggaaaaacctgtccccat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 421 131 NA intergenic
0 chr16 71310800 71311098 1000092 0 - 12465; Ya5ac2525; RIP_Alu_chr16_071_01 CTGAGAGCTCCACGAGGGTA TCCATGGAAGAAGCAACACA SINE Alu Ya5 ctccagttccttgtctctacactagccatgctggcttcctttctctgtcattcccagtctttcttgtcccagggctttacacatatcggtacctttccct
ggaaggctcctccctccctgctttacttttccttcaaatatcacctcatttatcacttcattaagaaagccttttctgactagatcaaattttcctgtta
caaactcatgttcctttctctcatagaacttattacagtggcaggtttacatttattgtgtcatttttaaattcatgacagactcttcaaatccactgag
agctccacgagggtagggaccatgtctgtttttgattaccactgtattctcaaaaggtagcagaatgaatggaaaaagtaggagtttaacaaacATCTAT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
TCTATgactgaattatgaatgaatgaatgctggggaatggcagccaatggtataataagttaaaagatgtatgttgtgttgcttcttccatggatatcaa
acacccaaattccaaaggttatacacagtgaacaaaaatgaatgacagggattgtaaaaatgtgggaggtataaagtacttcttttaggttgataaaaaa
atactgcccccccaaagaaaaattgttatttgaaaatgatagaattatgagtgttatttgtattatttttgctcagctaaattttctaatattttccata
atagtgtattaatattgtaagcatgttattttttactgcaacataaaatcattctggcttcagtgcagcagaaaaccaaagtacctaggaggggcagca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 499 194 NA intergenic
0 chr17 58919633 58919634 1000093 0 - Ya5NBC102; Ya5ACE; RIP_Alu_chr17_058_01 TCCCATTTCTCTAGACCTGCTG CCCATAACAGGTCTTCATATTTCC SINE Alu Ya5 acacagccaggctctcccaacaccacattacctgcctcctccagggatctaccttttcctaggcttggggtttcacagcacctctttgaggaaaatgaag
ggacccaagtgccagtgatgttggcagcagggactcaccattgagccgggcagcctggttgatgagttccacgtatttcgggtaaaactggaggatggct
ctccccgccttgtctcgccagccctcccatgcccataacaggtcttcatatttccgggatgtggccatcacattcgtcagatctggtaggggtttgaatg
ccttgagctccagcccttagctcacctctgcttgtaaggggagctcagagaatttcagagctggaataaaattggcgaaaccacatAAAAGTGACTGTAT
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG
CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGTGACTGTATaggcagcaggt
ctagagaaatgggagaaaggatgggagtggtctccagcagtggcttacagagtccccggcctggggcacatgctgcagacacctgcagggcctcagcagt
cctgtgaggggcgtgcttgagtctctctcctctcctttttttttttttttctttctgagacagggtctcactctgttgcccaggctggagtgcagtggcg
ccatctcggctcactgcagccttgacctcccaggctcaagcaatccttccatctcagcctccctagcagctaggactacaggcatgcaccaccacatcca
actaattttttgtattttatttgtagagacggggtcttgctgtattgccctggctgggctcaagcgattctcatg Other - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
E:Insertion-specific detection:PCR;C:Reference NA 55 483 194 Hypertension intron:ACE:NM:000789:15/25
0 chr17 14688276 14688578 1000094 0 - Ya5NBC120; RIP_Alu_chr17_014_02 GGACCACATGACTGAGTGTAAAGT GAGGTGGCCTCTTAACCATAATTC SINE Alu Ya5 accatcctgcagtcttggctgagcaccaatttgccagctatgagagtgggccatcttcacagtggatcatctgacccccagtcaagctgctccagcttat
gctgcatgtagactggactagcagtcttcacatagtccttcccaaattgcagtgtcgtgagcaaaataaataattgttgtcttagcctgaagatctgcga
tggtttgctactcagcaatacaaaactgatggaccacatgactgagtgtaaagtatatatttgagcaatgaaaataagatgggtgagtggtattgggccc
aattatggataacccttatgagggaatcagatgtgttctacttggcaatattaattataagagatataccagatggaggaggttAGAAATGACATTAAGA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAATGACATTAAGAgaccagaattatggttaagaggccacctcattaactccagcatgagttgataaagtctagcattaggtctatcatggtaga
aaaaagcagataaggcagttgagacattaaaaattaccaatagtacacattttctgaataaaaatgagctatgaggttgggattaacactgctgagtctt
tcagcttttttttttgagatggagtctcattctgttgccaggctggagtgcagtggcacgatctcggcttactgcaacctccacctcctgggttcaagcg
attctcgtgcctcagcctcccaagtaattgggactacaggtgcatgccaccacgcccagctagcttttttgtatttttagtagagataaagtttcaccat
gtt UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Reference NA 55 518 199 NA intergenic
0 chr17 12137318 12137621 1000095 0 + pAlu17-12139548; Ya5NBC160; 3797; RIP_Alu_chr17_012_01 CTCAGCTGTGCCTGATACTCTATAA GCCTACTGGATAAGTCACACATTTT SINE Alu Ya5 tttcactgtgttaggcaggttggtctcaatctcctgacctcatgatccacccgcctcggcctctgaaagtgctgggattacaggcgtgagccactgtgcc
tggccctccaattttattaataaattatcacccaggcagcgtcttaggcaattttctggttgtccatgagacactctttaagctcagaattttaggccat
aaaatatagttcaaacgatgctataaagagttaagagagtttccaaagaatgttgggtagaccttgagaaactatttagctcaggcgtgcaatgtttgtg
tgacttctcttgctcagctgtgcctgatactctataaatatgccttatttatcttcttcatattttcattatttaatgttcttctttAAACATACTTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAACAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCGGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA
AAAAAAACATACTTTTGgggctcctatattgcccagttacagctctttttaagtttttatgttccaatataacttaaaatgatttcagggcctttggtaa
tcaatagtgttatcaaattggggggataatatatcaaaaatgtgtgacttatccagtaggccaagtattgaagcatgggcttccatgggacagcagttat
tagcccatcaggagggaaaagccattgtaactttccttatgcttagggaatcctgagtctcatcttcccttatgcctgtcctactagaattctatggttt
atatcataatcttcctcaagaagattgggtctttttgctcaaatttctaaaatttgaaaacttaacatccataggactgttttttaaacgtgaggatttt
gatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 551 234 NA intergenic
0 chr17 62361017 62361318 1000096 0 + Ya5_421; RIP_Alu_chr17_062_01 GAGGCTGTGACTGCAAAGTG TTCGGTGTTCCAAAAACAGAC SINE Alu Ya5 ttgaaaattggcagatttgtctcttcagtacctgctatagagctgaggcaggaagggcctgacatcccgtttacattgacaacaacaaatggtgtcagca
ccatgctgaccactgacactgatgacattccttatctcagcaatcttaggaggcaggtcctggatcagttcccatatttggatgaggaaatgggagccca
gagaggtgaaagaccttgcccagggtcacacagctcatgggtagcacagctgggattcaaactcaggaggctgtgactgcaaagtggatgttcccgctgc
agcaacaggcagccttcccaaggatcacttctcaattgtaggatgagtgggcaaaagagccagtgatcctgcacttctgggcaggtAAGAAATGACATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAATGACATCTgtgcaagattagtcatggcaagtctgtttttggaacaccgaagtctgttctcatgctgctaataaaaacataccccagactggg
taattataaagaaaaagaggtttaatgaactcacagttccacatggctgaggaggcctcacaatcatggtggaaggtgaaggaggagcaaaggcacatct
tacatggtggcaggcagagagagggagcatgtgcaggggaactcccctttataaaaccatcagaactcgtgagacttattcactatcatgaaaacagcat
gggaaaaatccacccccatgattcaattaccccccaccaggtccctcccatgacacgtgggagttattacaattcaaggcgagatttgggtaggaataca
gc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 493 177 NA intergenic
0 chr17 64599262 64599557 1000097 0 - pAlu17-67552076; Ya5_435; RIP_Alu_chr17_064_01 CTGGCGACTAAGGTGAAAGC AAAAGGTAATCCCTCTATCCTCTTG SINE Alu Ya5 ataagatctgggaaagaaagggtagtgctcaatacatacttggctgatcaattgattcttaaaacaaacaaacaaaattatccttattccttcccatttg
ccagtaaaaaaaattgtaaaataaaataagtccatcacaataaaaatacacaatctcagaaaagtcatttgtttggaatggggaagaaatggagcaggaa
ggacaatgagaaagctccacagtagtctggttgagagacagtatggattgtttggtttttttttataatagccatgtaactttcaacatatacaggtttt
tattcattagcaatattgttaccttagccataaaaaggtaatccctctatcctcttgtcttggattaaatttaataatacacgtcAAGAAGTCTATTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGA
AGTCTATTTGGtcattttagctttcaccttagtcgccagtctttattaagaattttctattggggatcataatgtattcttgttaacaaaagcttcttcc
ctattgtctctaaaaggagaaactatcattgtcaaatgggtatatctgcatatgggaacattatgatatacatcatgagaacacctgcatcttaaatgtt
ttacaaaatatcaatgggttgagtatgtctgatacaatatatttgaacttgccttgtaggcctccaccatcatgttttccatcactttaatcaatcattt
tgacctaagtatattgattaccaccatggtattggttccttcatataccttgcttggatttaaaacttttttggaagtggtaagaaatgttaccaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 407 96 NA intron:ABCA6:NM:080284:25/39
0 chr17 13161224 13161529 1000098 0 - Ya5_454; RIP_Alu_chr17_013_01 AAGCCTAGGACACACGCATAA TGCTTGGCACTTAGTGTTAGGA SINE Alu Ya5 aaacaacttctgcttgcaaaaatggacccactgtccacattttttgaaagcagcacaggtaaagaacaaagccttaagctttcactccatcgagtcaaag
ttcctagcagtctaagtgcagatgcattataatttgtgggttttgttgtttgtttctagaggatccctccagaaaatcttctttatcttcttcatgacta
aacttccacagggcctgtcttgtgtctcataagcagcttccatctttctccataaacacctcttgtattttcaaacataatggcgcatctcccacgaaaa
actgaaagacaaatagggatatgtaagaagaaatgcttggcacttagtgttaggattttcaacactaagttgttcatgtAAAGATTCTGTCTTTACCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAAAAAAGATTCTGTCTTTACCCTTtcattatgcgtgtgtcctaggcttttcaagtgaacatcagcatacaagttatttgcttagaacagagctgtaa
gagtaaaatgcatgaacacagtcgaagcatctggttgggaccatggccacctgtcagcattggatgctccctttggtgtgtttcagtgaaaatgaataaa
ccgcatttccttttaagccactgcattgagttgggtctactttttatagcagtctagtcttaccctagcaaatacattctctcagctcaatgtatattca
tgtgttgcttaacaacaaggatatgttctgagaaatgtatcctgaggcaatttcttcattgtgcatagcctactggtactaggctgtgcacaatggtcta
acctat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 59 418 91 NA intergenic
0 chr17 78182448 78182749 1000099 0 - Ya5ac2539; RIP_Alu_chr17_078_01 AGTTGACAGGTTTTGCCACC CAAGACAGGTAACGCAGCAA SINE Alu Ya5 ctcagctcctgagtggctgggactacaggtgcctgccaccacgccggctaatttttgtatttgtagtaaagacagcgtttcaccatgttggcccagatgg
tctcagtctcttgacctcatcatctgcccgcctcagcctcccaagcattaaagcttttagtatgctgtcttggagttgacaggttttgccacctcttgaa
atgtgaattcaagtatttcatacattttgctgagttagcttcctagggtgttgtgtgctcagcctttatgaaacagtgaacatgatgacagtaaactgag
agaatttggaaacctagcactcactatttttttagccagtcacctttctcatttctgacgatagttagatataaattgctgattAAAAATGAGTCCTGTA
GGCCGGGCACAGTGGCTCATGTCTGTAGTCCCAGCATTTTGGGAGGCCGAGGCAGACTGATCGCCTGAGTTCAGGAGTTTGAGATCAGCCTGGCCAGCAT
AGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCTTGTAATCCCAACTACCTGGGGAGGCTGAGGCAGGAGAGTGGC
TTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCGAGATCGCGCGACTGCACTCTAGCCTGGGTGACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA
AAAAAAATGAGTCCTGTAttcccagctacttgggaagctgaggcaggaggatcatgtgagcccaggagttcaaggctgcagtgagctgtgattgtacctg
tgaatagctactgcattccagcctgggcaacacagtgagatcttgtctcttacaaaaaatagaaaattgctgcgttacctgtcttgactttctcttttct
tttttattgtaaaatatacatattaacttgtaacattggtctttttaaaactatcatttcagaatttctagaaggaggagttggccatgttgaaatgtta
tttcgctgcaactatttagctttagttggtggtggaaaaaagccgaaataccctcccaacaaaggtactgtaattgtgtattgaagaatcatgcctcacg
tg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1018 713 NA intron:WDR45L:NM:019613:2/10
0 chr17 65671535 65671852 1000100 0 + Ya5ac2571; RIP_Alu_chr17_065_01 CCACAAATTCTTAAAGCCCA GCCACAAGCTACGAGGAAAA SINE Alu Ya5 acagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcagagtgttccatggaagtcag
tgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaatgactataaatcatgctgctataa
agacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactagattaagaaaatg
tggcacatatacaccatggaaaacccacaaattcttaaagcccacatctgaaaatctagacattcaagtatgtacattttctttcAAGAGTATCATTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGTATCATTACAgtgttgttgacgttactgaaaatatgttttgcattttcctcgtagcttgtggcatattccataaata
tctacaatagtgattagttttggctgtctgaagtttgtgttgtttgttttaattttttgttttgtttttataagttctggaaaaagtcaagttgcatgac
tctcatgatcttccaaagatgtattactaaagcaaagagacattcttacaggtgttttaaacatgagattcagtttgctaatggtggcacctctcactgg
aaagcatttcttactgtgctgtagagggtgactatggatgctggtggcagtctcactttccctagtggctactgaacgtgtttgtgtctcctttagaacc
aatagtttctaatgaata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 462 136 NA intergenic
0 chr17 71558420 71558421 1000101 0 - Ya5ac2577; RIP_Alu_chr17_071_01 GCTTTTTCAGCATGTTTGCTT AACCACACACTCACTCACGC SINE Alu Ya5 acgtctgtggcgaaaagaacttagtgtgatatttaggagaactgtctttttggtgggtattgattagtcttttttattatttccttgtacctaaaagaaa
caatctttgagttgggtcacatttgtaaaaggtaattgtgttggcatacagtagagcttgacaagtttgttctggaaggaaaagataaggaaagttctgg
tgtgctgtgcttcagtgtagagtgtcccaagtccagtctgtaaggcccctcaaggggtgccaggtcctgagcagagggtgaagcgctgcagggaagtagc
aggaagctgtgctgggaagagacgtaaagcctttgctaagtctcagatcagttatgcagacagctttttcagcatgtttgcttttAAAAATAGAACTCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAATAGAACTCCCctttccatatgaataatgaatgactaaggctatgagaaaccattatatggtagagaacagtaacaattaaaatgatatctggt
gtggcgtgcgtgagtgagtgtgtggttgggggactccatgtgcgattttgctcccctcccattaggtgactatggtttgctcaaaggaaagtctcttact
ttgatctgcccttgtttaggctgaaagcgaagaaactaaggagcgcctgtttgaatcaatgctcagcgagtgtcgggacgccatccaggtggttcgggag
gagctcaagccagatcaggtaggaccctcagccgagccctggttcttgctctgggcgggtccaggtcagcctgtgtccccttctcaggtggaccccagtg
ct Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 465 148 NA intron:SRP68:NM:014230:8/16
0 chr18 68047755 68048055 1000102 0 - Ya5ac2584; RIP_Alu_chr18_068_01 TTCCAGAGATGACATGGACA AAAAAGAAGCCTGGAGAGGG SINE Alu Ya5 gaagtaataaaagtattcatttgaaaactgcctttatgagtaaatgttacatttaatgattgtatttaaatgagtgtgttgaagtaaaacagttcttgtg
acgaatacattcagggtgttaagacaaaataaggttccattatttagggtctaagtgagaaggaatagagtccctaagaaaagtctccatggagtttctt
catgaagtcctttgggcaatgacatcttagtaacctggttacaggaatgcttaaagcaatccctaatgctataataatgacagtgggttttctttccaga
gatgacatggacatcactcttagctttaggacacaatttatctttcccttccagtagtaggttgttaccagatttgaaataaaatAAAGAGTCAATTAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGTCAATTAGTacagttagtcctggattttctcaataactatacatacttggaaaatttattcaccctctccaggcttctttttttctccttgcc
tgtgtaaaatggaataatctctaaaaagatttgtaggtctaagattctaagttacaaaaatgttcacgatgctattctaaatcacaagtgcaacatcagt
acaggtccttcgagaagcatacaccaagatggaattaaacttgcaagaaatatattggggtattgccctaggaaatgaaacaaggagggaagtagagtag
gctacattagctgtcagaccacgatgctggtcagacttctatgcaggaaagtgggattgtaggttgtaggatagttctaataaaatattggcaaggctat
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 496 180 NA intergenic
0 chr18 11961930 11962237 1000103 0 + 15175; Ya5ac2613; RIP_Alu_chr18_011_01 TGGGGTTGGCATTTTTCTTA CTCTGCTGCAGCGTGTCTA SINE Alu Ya5 ggacaaagaatccagttttaaaatacgagcgggcagagccggggactgtggtgcattcctgtgatcccaaatactgtggaggctgaggtaagaggatcct
ttgagcctagcagttcaagaccagcctgggaaacatatggcgactctgtctccaaaaacccaaaatcaaccaaaacaaaacaaacaaaacaaaacaggca
ggcaggagaatttgtcagtatatttccacctccatttatattcaatcccaggaaccttcctcatgcaggcagtgagatttgaggcgtaaattaccctgaa
agtgggagtggggttggcatttttcttaagaactgggaacaaagcatttctccttgggttaatgctgacaaacgaaataatgcaattGAAAAAGAAATAA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAAAGAAATAAtacggatacggcagggggtatatgtactttccccttaattttgccgcgaacttaaaagtatagaaaaaaaatagacacg
ctgcagcacagcctgtgtctctcctccgccccgtagacggaagtgcagaggggctggagggacgaggctagagcgcggcaaagcaggcgggagaactaga
tcccagtccaggtgaacatccaggcccacgcgcactcccctcctgcagaggcaaaggtgagggtgagggttgtgccagaaggtgacttttcctggaaacg
tttagggcccgggccgcattcctgcgggtcttgggtacaggcaagctcctggtttccttcctcaggacacctgcatcgggggagtggcgcggcagccgaa
gagagaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 496 182 NA intergenic
0 chr19 56149289 56149596 1000104 0 + Ya5NBC150; RIP_Alu_chr19_056_01 AAATGGAGACACAGAGGTGTAAAGA CCCAAACTGCATATTTAAAGGGTAG SINE Alu Ya5 ctgcttgttcgtttgtttatttatttatttgagacagagtcttgctctgtcgcccaggctggagggcggtgatgtgatctcggcccactgcaacctccgc
ctccagggttcaagtgactctcgtgcctcagcctccagcatagctgggattacaggtgtgccccacgacacccggctgattttttttttttttttttttt
ttttagtaaagacagagtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgattcacccacctctgcctcccaaagtgctggaattac
aggcatgagccacggtgcctggcccaaactgcatatttaaagggtagagtctgatggctttaggtacttgtcacatcagcatagtcAAGAAGATGATCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAGATGATCATagacaccaccctgaaaactgtgcttctgcccctttgcgtgtatctgggactctgttaatctctctttctttacacctc
tgtgtctccatttgtgtctttctctatcttctcttttctctctgactctgtgtgtccctgtgtcccaggctctctgtgtgttctctctgtgtttctgtag
ttgtgttattctgtctctctctctctctctctttcttccccaccccttcctccttccctgtctttctgcctccctctccctgcattttaggcaggggaga
ctcaagccactttgcagagggagctctcaactccttctcttgccttcactctgggcccaggccgtggagcacaaagaggcagggacccagtctgggaatc
tgcaggtg UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 491 169 NA intergenic
0 chr19 20037730 20038026 1000105 0 - Ya5_416; RIP_Alu_chr19_020_01 TGCATTCATCCAGCACTGTT GCATAAGGCCCAGTCAAGAG SINE Alu Ya5 caagctttatcctacataaatggaaatgcagatataataagcaaatgagataagcaaatcaatgaaataagcagattgatacaataagcaaattgcaatg
gaaagaggagaagggaaaagagatatatatattatgctcgccagactatggaggattcaccaccagagtgggaagcaacagtctgggctccagaatcaga
cactcatctatgcacagatgaggagaggtctcatgaagcttgggcacactctgggaccctagctctttggtaatgagttgtttggcataaggcccagtca
agagagtcgttcatgattgggctcaagcaacacaaaaaagtcaacttgcttttgcaattctctattgtttttcaacaactaatatatAGGAATAGATTGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGAGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGG
AATAGATTGAaatagagatatctccaaaacagtgctggatgaatgcatcaaggggctcacacaacctgttccaggacttggtgaccattggttgtgtcca
ttttcaattgagttcaaatttaatatttaacttttcctccacaaattttcctgtcttgatgaattggctctgtctaggcaaagggcaaggtgaacccctt
gggcagttacactactctgccttctgggttcaagtgattctcctgcctcagcctccatagtagctgggactacaggtatgcaccaccacacccagctaat
ttttttgtatttttagtagaaatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccacctcggcctcctaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 463 153 NA intergenic
0 chr19 58512615 58512916 1000106 0 - pAlu19-58496721; Ya5ac2662; RIP_Alu_chr19_058_01 CCAAGGGCCAAGTCTATCAA CACTTGAATTTCATACCAGCCA SINE Alu Ya5 aaactgtacagaccaagaggaagtggggcaacattttcaaagtgctgaaagaaaaaaaaaagctgccatccaaaaatattatacagcaaagctacccttc
aaataggaagaggaaactgtctttcccggacaaacaaaagttgacagcattcatcaccatcagatccagcggacaagaaatgctacaaggagttattcaa
catgaactaaacaccaattggcacacacacaaaaattgaaggcacaacacccactggtaaaatgaagtataaaaggaagcccagaatactctaatactgt
aattgtgccttgcagtccactcataactctagcatgaaacccaagggccaagtctatcaaaaacagtaatacctacagcaagctgttAAGAGTGAGGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGTGAGGCAAtacagaaatatatagatggagagcacataagtcaaaagtggctggtatgaaattcaagtgtaaagatgtttttcagtttttcttt
gtttctattcttttttgtgatctaagataagttgtcatctatttaaaataaatgcttgtatttataagatatttcattgttaattcttttgtttgtttag
ttctctgttatttcaagtaaattttaataaaatgagtggttgtgcttgcttgctcgccttagggatatgagaacacccaccccaaaatctctttctttct
aacatgatcaattggcatcgtcacatgataaagaaaaaaaaattaccctctactgatttagatcctgaacatctgctttttttttcttttttttgtgaga
ca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 435 120 NA intergenic
0 chr19 23112644 23112945 1000107 0 + pAlu19-23096752; Ya5ac2670; RIP_Alu_chr19_023_01 TGGGCAGAGTGAATATCCTTTAG GACCTTGGTCCTTATTGTCTTCC SINE Alu Ya5 gtgctatgtttaagtagaagcattgagaatgggcacaatatagttttgctttgttctctgtgaattttaagaagcaaacacctcttcaggtttttataaa
ctggcttcaagatgtaaagatattcttttgttgggtgcccagggtgatagaatgccctctgggcttatagtggagaggggttgtagcttggtaacaaggc
tgctgggtcttcactggggtccaactttagttgacttgttacaaggggcttgggtagttataattcccattatatttttgggcagagtgaatatccttta
ggactttgctctgtagggtagacactagggcaggtttctgcaattggttgtgcatatatggtgggctttatatcaaaatgtagatGAAAATGGCTTTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAAATGGCTTTCACtgggtaccagaaaggatttccccaggtctctgtgtgggtttccatgtaggtagagctgaccatgaactgtggctcaaagagct
ggaactgagtcatgcaagtgcttcggggaagacaataaggaccaaggtctgcagtcttgtctgtgtggctataaatgagtgtctttctccaggcctctga
aaaggcaggacctcttccagactttggctgggaagagttttggatggtttcagagtaagttcaaaattctcagtgggaccaagttgggtggataattttc
tggtctgtagccaagaacaggggtcctgttgtttgccacctgaatgaaagcctgccttctaaaaaggatgctcctcaatcttgggcattagcagagtttc
ac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 476 159 NA intergenic
0 chr20 35249038 35249335 1000108 0 + pAlu20-36453952; Ya5NBC148; RIP_Alu_chr20_035_01 ACAAGATGACAGATGTAAACCCAAC AAGGTGTTGTCAGACTAATCTATCG SINE Alu Ya5 agtcaggtcatttgtcctggaatattttccacattctgcctttgattaattgtatcttcatgatgtttttgaacatatttccctatcctttgtatccctg
taaactgatagttagctcttgaggctaaattatattcagggttggttttcttggtgaaaatatttcacaggtggtgctgtggacttcctattaatagata
cataatatctggttatttcacttttagtgatgatgaagttgtaaattaaggtgttgtcagactaatctatcgcttataaatagtatatagtagggatttg
ttttttcatccagtctgataatttctaccttttgattggggagtttattccatttatttttttattttgattctttttttatgtttAAGATCAATCATTT
GGCGGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GATCAATCATTTatgtttaattatattgttgggtttacatctgtcatcttgttatttgtttcctattggcttacctgtttttccctctcttttcctgtct
tatttttatattttattttgttttattttatttttttgagacagggtctcactcttgtcacccaggctggagtgcagtggtgtgatctctgctcactgtg
acctctgcctcccgggttcaagtgatcctcccatctcagcctcctaagtagctgggattacagacgcgcaccaccatgcctggctaattttttgtatttt
ttggtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatttgccctcctcggcctcccaaaatgctgggattac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 60 505 193 NA intron:RPN2:NM:002951:2/17
0 chr20 36572685 36572983 1000109 0 + Ya5NBC45; 3071; Ya5_5642; RIP_Alu_chr20_036_01 TAGGGTAAGGAATATGTGCTGCTTTAG GTCTCTGAACGACTATGTGAGCAG SINE Alu Ya5 aactcctggacttaagcaatccacccacttcagcctcccaaagtgctagggttacaagcatcgagccaccgcacccagcctggaatttgtctttagttca
catattactgcattaaattcatttgtttttatatcagattcacactcttattttaactttataatatttactgatatttagtaggtctaatgtctttttc
tctttttccttctcttagaatatttatctcttcttgcctgtttaacatttcagatcaattttagaaccaatttttcaagttacaaaacataagcaaacag
aaggaaaaacctcaacgaaaccttctggggtttggattgtgtattatttagggtaaggaatatgtgctgctttagcaaatgaacttGAAAATCTTTTATA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
AAAATCTTTTATAaagtctggagtcaggactggctctgctcacatagtcgttcagagacccagctggcagaggctctttcatcttcaacagatgactcca
ttagggcctcagtgttataagcaggattctcgtatctggctagcagatggggaacagagagcaaggaaaattttgtgggagggttttatgtgtcaggcct
tgaagtaatataaatcactgttactcatattccattagccacaactcagacacacaccacacttaattgcaagagaacagagaagaaaagagaaagtggt
gaacagctagccagactctgccgaagatgagaattgtattaagcttgtatttatatttaggaaacgctgatatctgatattgagtctgcctttcttttt UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 591 265 NA intron:KIAA1219:NM:020336:6/30
0 chr20 14477082 14477382 1000110 0 + Ya5_5672; pAlu20-14476982; 2845; RIP_Alu_chr20_014_01 TTCAATCATTTTCACCTTTTGC GTGAATTGCCAGCATTCTAATC SINE Alu Ya5 aattaaagtgatggtaaaatagactacacctcttgataagaggagaggcaaagccacgtcgcaaaggggcttgtgtaaaaaattggaggaattattgggg
ccatatttggagacttggccccttcacattttgtatctgactttctcataagacttttatttcttcagagcaagggctatgccttcttcacgttttcaga
atcagagtatgaaaaatatttgctgtttcttgagtaaatgattactccatgatagttttccctctaccccaactgccaattataaactcagatttacatt
cagaatactggtgtgaagcatttctactatatctttttttttcaatcattttcaccttttgcatttatcttataaatctaacactataAAATACATTATC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTTGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAATACATTATCttagttttttttttttagattagaatgctggcaattcactgggaagtgatccctggaagtattaaatgaacagaggagtgggagaag
taaaaaagggaatggatgaggctaaaaaaagggtgacaagcaaattaacctggagcaactggggttgtttctactggggaactctgcacgtgcctcggag
ctatcccacctgaagggtgagagcactggaggacatgaatttcccagaagttatggtgctccatgattacaggcaaagcaagcccactctagtggccaga
gagagccctcaggcaaagagacacatgttctagaagtcataccaacagcactgaatggtccaagtcatggagatctgggcagtgcaccagcaatgactgc
c UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 412 100 NA intron:MACROD2:NM:080676:4/17
0 chr20 32579493 32579805 1000111 0 + Ya5ac2704; pAlu20-33784411; RIP_Alu_chr20_032_01 GGTTCCTGTCCTCCACTTCA TCCTCTCCTCCCAAGTCTCA SINE Alu Ya5 aaaagtctaatttattagagccaaagcaagacctgaggaatctgtgtgtttacgaagcaccccaggagattcttatgatcagacaggtttagaaaattct
gctttaggggatagattctaatcagaagaggctgcagtgagagccacaggcctaagattcacagcagttctgtctccttccgaaggccttcccttggaga
gactgcctcagatcatgttttcagggctgtggtccttaaacccaggggtcctgtgctaccctgggagtagaggtagaggctggggttcctgtcctccact
tcagtcagagcacacacactaagaaccatcagttcatgtttctacattggttttaatttggaaaggggtttggccaatttAAAAACTACCCTACTGGAGT
AGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACTACCCTACTGGAGTttacaaaaataacataaaccagtttatgtgagacttgggaggagaggagtccactgagacactgctg
ctgatagagcagcgtgaccagtgaaggaagaccaggaccatgcctgactcacctctgttcccgtgtcattcaccacaggccgcagagtcaggtcagtgaa
cgttaaatgaaccaaccacagtgggtgttgccatcagcccctttgatttggtaattcttgaggactgtgttgagaggaaataatcccaaaggaaaaaacc
tgaaatttttgcaagcatgttagatgccataatcagtagattaataattgttataatggctgggcgtggtgcatggttgctcacacctgttctcagcact
ttgggaggccatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 498 165 NA intron:DYNLRB1:NM:014183:2/4
0 chr20 7222351 7222649 1000112 0 - 2716; Ya5ac2706; RIP_Alu_chr20_007_01 TCAACTTGGCTTATGTCTGAAAA TACCAAAAGCATTGGCATCA SINE Alu Ya5 aaacatcagaagattgctcttagggaacttcctgggatgatggtaattttctctaccttgatagaggtttgggttacacaggtctatgtatttaaaatat
gcttactattccattccacttcaaaagacatattgaaatgtagttgataatatgcttgctaaagtgtttaggggaaagcatcctgacatctgcaatttac
tttaaaatgtacaaaaaactaagatgaagtatagaaaaatggagggatcgataaatggataggtttgtgaaaaagcaatatagaaaaatgttcatgttag
agtctaggtagttgatatgcaagtgtttactgtaaaatttattcaacttggcttatgtctgaaaatagttgtataaaatgttggtgAAAAATGTATTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGTATTGTCattcctttttttaaaaaaaaataaagatccatttgtattaataatcattctctttttatgatgccaatgcttttggtaaagttaggg
gcatcaaaatcattaatagatgtcttagtctgttcaatcttctgtagcagaatactatagtctaggtggcttaaataatagaaatttatttctcacagat
ctggaagctgaaaaatccaagatcaaggtgctgtcacatacggtgactggtgagggctgcttgctgatttatagatggcactttcttgctataaactcac
ttggagggaagaatgaggcaattctctagagcctcctttataagtgcactaatctgattcatgagagctgagccttcatgacctaatcaccttccaaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 449 136 NA intergenic
0 chr20 59959698 59959988 1000113 0 + Ya5ac2709; RIP_Alu_chr20_059_01 CTTTTCCTGGGGCACAATTC AGGCCTACAGCAGTTGCCTA SINE Alu Ya5 cccaccctctccccttccccagccctgcaaccgcccctccacagccctgggccctccctcccacactctccccttccacagccctgggcccctccttccc
accctccctcccaccagccctgggcctccccctaccgtcctctcccctcccctagccctgggcacctccctcccaccctctccccttccccagccctggc
ccctctgtcccattctctcacctcccttagccctgggactccctcccagccctgggcccctcttcccaccctctcccctcccccagccctgggccccctc
ccaccctctcccctcccccagccctgggcacccccccaccttccttttcctggggcacaattcacatgtacactgacttgcataacAAAAAACCACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACCA
CTCACacggttaatcatgggtgcagttgataattacaggcacaattaaccacttgctaattttgagggtgcgagcagttaattacattcacaattaggca
actgctgtaggcctgggaccggagtcctggtggggggacactccttgtaatcagactcccagggtgaggccctgtggtgggggtgagggtcaggtgatct
gcgaagcacccccctcccagcttcaagtggggagcttacaggcctagaggtcagggcctggcaaacgacctgaaaaatccagcttgaggccctttccagg
gagccccagaggccttctcttgggtcatttcccaggatgggggtcgctgtcactcctctgtcccaggaggattcagagaggtcagttcaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 471 166 NA intergenic
0 chr20 19009431 19009729 1000114 0 - Ya5ac2715; RIP_Alu_chr20_019_01 TGCTGTCTGAGTGAGATGGG ATGAACCTTCGAAATGCCTG SINE Alu Ya5 caccaaaagttccagatgagagagaaaggcagcccagacccaggagtaagagggggtcttgagaaatgattggattatggatttattttgtgggatagaa
aaatgataaaggagtcaaaatttgactccaaggtttggtgtatttgctaatgaaaagatgacattgccatttactgagccagggattcctgcagaaagag
agttttgggggtaggggagatcacaagtttggtttcagacattgttattgactaaatatttacattcccttcaaaatttatatgttgaaacataatcccc
catgtgatagtatttggaggtgaggcctttcagaggtgattgggctatgaggtcggagctctcatgaatgagatcagtgccctcatAAAAGAGGCCCTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAGAGGCCCTGGagagctccctcagccatgtaaagatacggcaagaaggcaccagctatgaacaaggaaggggcccctcaccagacaccaaatttacca
gcaccttgatcttcaacttcccagcctccagaactgtgagaaataaatttctgttgcttataagccacccaggctatggtatttttttacagaagcctga
acataatgagacaaagatgtctctgctttgagatgattatttaacatccaagttgggatgtctagcaggtatttggatattaagcggcatttagtgagag
gtccaggcatttcgaaggttcattttatgtgcaggaggcacatgtgagcagataaacaacacagagcttctctttgttgcaacactgggttcaaaccag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1180 867 NA intergenic
0 chr21 23664118 23664417 1000115 0 + Ya5NBC351; RIP_Alu_chr21_023_01 TTCCTCCCCTTTTTCCTGTT TGTCAGTATGTAAACCCATGCT SINE Alu Ya5 aatttcagatgttcaaacatgtattttttctttaatcaaggctatctagctgcatctactctattcaatatatatttgcacattcttaagatatcttcaa
ttaagcttataaaaatatgaatttacatatgcagcatgatttacttttcaggattgatcttttaaaatttgtacaaatttaatatcttataaatattgca
attttttcgaacactgccaaaatataattgatatcatgaaatattcatttaaattactcaaatatgtcaacaggcaaaaatacatttagtaaccactaca
tgtatagagaataaaaattccagtttggatgtgatgttatatgtcagtatgtaaacccatgctttaaatagaccattttgttctttAAAAAAATTATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATTATCTGtagttttctctgtggaaccgataatattagagataatttctcataacaggaaaaaggggaggaagtaaaaaggaagaaaagaagga
cggaagaaattaaggaaaacaaaagggaaaaaagagataacaaaagaaagaaaaaacacaagtatcctacacaagtatacagctcattgtactctagtga
gatgaatgaattatagatacaataacataataataatttttggtgtttatttgaaaagcaaatgctgcctttctctatatcagcttatgttggatatctt
attatcctaatcaaaagtcagtataacagaagagtagaaaggactactgaaatgtgactgagataaaaattatttaaatgtaaataaataataattaggg
UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 437 123 NA intergenic
0 chr21 16444095 16444411 1000116 0 - Ya5ac2731; RIP_Alu_chr21_016_01 ACCTCACTCAGAACTCAACGAAG ATGATACCCTTTTCTCAGCACAC SINE Alu Ya5 gggatagcattgggagatatacctaatgctaaatgactagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattg
tgcacatgtaccctaaaacttaaagtataaaaaaaaaaaaagattcccagcaaattttgtgaagtctggttttaaatccaggtttatttaactggcccgc
taagtgccagatactctgctaggcacaaccacatgctaacttacttactgaagaatgaaaacaaattctgtcttctcagatttcacacctcactcagaac
tcaacgaagaccacaacaaagcgctcgagagaagcgatttaccagggtgtctgggggtgctgttatcatcgctgccacactaacaaatAAGAAGCATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAGCATTTCcaggggaagacagatccaacacgagacaggtgtgctgagaaaagggtatcatagtcttgattttgtccttt
cgcaaagggtaaatgtaaacaggaaataccagaacacctaaatgtaaacaagtacttgaggaattctaaagttgttctaagaactatggaaaaatatttt
taaaaacattcatattattaaaaatatggaatattgttatggttgttatagccagaatgtatcatggctccacttttataaatactattaaaaagtggta
tttatatcatactccttataaaatttcaaacgtcacatttactgcagtgttttgtcattctttgtagcacaatttaaaatgcactccaaaatggacatgt
gatttttctcttccaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 429 103 NA intron:C21orf34:NM:001005732:2/8
0 chr22 16479533 16479826 1000117 0 + Ya5NBC109; 52565; RIP_Alu_chr22_016_01 GTGCCTGGTACTCTAGAAATAAAACTCTCT AGAATGAAACTCCGGCTCAAA SINE Alu Ya5 aaatatttgagacagaaatgcatttactgaggccaggcgtggtggctcacgccagtaatcctagcactttgggaggccaaggcaggtggactgcctgagt
tcaggagttcaagaccagcctgggcaacacagtaaaaccccatctctactaaaatacaaaaaattagctgggcgtgatggcatgcgcctgtagtcccagc
tacttgggaggctgaggcaggagaatcgcttgaactcgggaggcggaggttgtggtgagctgagatcgcgccactgcactccagtctgggcaacaagaat
gaaactccggctcaaaaaaaaaaaaaaaaaagaaatgcatttcctgaaataatagctgaaataggacttctgtatttgatccagAAAGAGTCATACAAGA
GGCCAGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAG
TCATACAAGAaactatcaccatcaaaacaatattaagcaatatcctatcagctgttatgtattagtgagagggaaaatagtcttttcttcttcaaatgat
aaactagtcaaatagcccaaggtttcagagagttttatttctagagtaccaggcacataaaaatttaaggctgtactaaaaggacaatgaaaatattaaa
caatatatcttggtcatattttatttactgatttttttcttgagacagagtcttactctgtcacccaggctagatggagtgcagtggtgcgatctcagct
cactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgagactgcaggcgtgcaccaccacacccaaccaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 58 561 251 NA intron:ATP6V1E1:NM:001696:2/9
0 chr22 16264244 16264561 1000118 0 - Ya5NBC221; RIP_Alu_chr22_016_02 CAGTTTTCCATATACATGTGGGTTC TAGTGTTAAGAGGCCCATTTTCTAC SINE Alu Ya5 atctgacaaaagatgggagatacctaaagagttgagaatttgaatataaaacttttctgtcagaaatcaaagaaaacctagagagagagaggtaccatca
tcatgggtcagaagactcaatagtgttaagaggcccattttctacaaattgacctagatattcaatacaactccaatctaaatgctagcaggcttttttt
gtagaaactgataagctaattctaaaattcatatggaaatataaaaaatataaaatagccaaagcaactttgaaaatgaacaaagtgagaggactaacat
tatttgatttcactacttattaaaagctgcactaattaagatactgtgatattgtcttgaaaacagaacagagtgaacaatgacataGAACAGGGTCCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGGAACAGGGTCCAGaaatgaacccacatgtatatggaaaactgacttgggcaactaataaaggatagtctttttttttttttt
tttggcgggggggtcggggggatggggacagagtctcgcactgtcatccaggccggagtgcagtggcacgatctcggctcactgcaacctccacctcatg
ggttcaagagattcttctgcctcggcctcccaagtagctgggagtacagacgtgcaacatgacgcccggctaatttttgttatttttagcagagacgggg
tttccccacattggctggactagtctcaaactcctgacctcgtgatcctcctgactcaagtgctaggattgcaggtgtgagccactgtgcccggccaggg
tggtcttatctacaaatg UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 640 313 NA intergenic
0 chr12 89370520 89370710 1000119 0 + Ya5ac2215; 12732; RIP_Alu_chr12_089_01 TCACATTCTGCCAGTGTTCC CAACAATTCCTTGGTCCCTT SINE Alu Ya5 atgcatggcacttcatcttttaaagggcactttaataatttttctaaatcaatgcatgtaagagttaggtgttctcttcaagttcatcttaattttattg
aagaagaaacaggctcagatatgacagatgaattggcctggcttttcaaattttaagtaagttgacttttgattacagattcagaactcattcaattgga
caacatctgactcctagagacagacttcagaaactctgtagaaacccaaaccaaaactagcaagtgaaaatgtagcttctcttctttatgccttccatat
tctcacattctgccagtgttccactttttatattatacttatttgtttttgattcctggtttgcttcaattttaagataaagataatAGTAATAAAAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAATAGTAATAAA
AAATgtactatgagtatgaatcattaaatacaggattgaaaagccttatgtaaatatagttgctcttcaaataatctttaaatatttgtgaccatctact
gtcataaagggaccaaggaattgttgtaatataactgatttactgtgatttaagtgtgtaattgagtaacaaatgttctaaaatatgactgacagatttt
ttcagaataaactctgtgttgttcattttgttatagtcaattaaatttaaatgtattaaaagcggtttacctgatattaaactctaaactctatgttctg
gaaaatagacttcaaaaaacttcatatggtggtcaattacagatgttacaaataaactagactaatgggatacatttaaatgcaaaataca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 424 124 NA intergenic
0 chr13 71854726 71855025 1000120 0 + Ya5_552; RIP_Alu_chr13_071_01 TCAAAGTTCATTGGAACCAAAA GCAGGCAACTTCAACAGCTT SINE Alu Ya5 tgctgtgatttcaatctttgagaaaaactaaggctttcatgagctaatcatcttctgtatctttatattctggctaattagtaattataaattgcctatt
ttaaaacaggatctaggacacaatgaaaatttttaaaaagttaaatcaatctgggctgaatgcccagaaaaattaaaaatttagtttaacactcctggga
tctctatgtgtatgtgtatacgtctatgattgggtttattagacaaaactaattgaaaagaagatatctggaaattaaacctcaaataatattagtcaga
gataaggaagcatatttttaatcaaagttcattggaccaaaaaaagtctataaagtaacttaatccaaggttttttttttttttttaaaaAAAAGGGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGGGTTTaaaaaaaaaaacttaagctgttgaagttgcctgcatttaaaattaatacctaggggtagaaaacctactccttaaacctgatactaagaa
atatgcttattaatggagtcaggggtagaaaaaggtttaaggaggagaaaataaaagtgaaaataaagagacaagcaaggggtatagcagatggagatag
acattcaaagctggagagagaaagagtaggaaagattaaagcatttagaacatattccaaggaatattcttaggctatgggcatcacagtgggctgtctc
cctgccctttgggtaattgactagccactattctcagctgcttaagtgtataagcttcttaagaggccatttttgttttattcatagtgcctactatagt
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 423 131 NA intergenic
0 chr13 68864669 68864962 1000121 0 - Ya5ac2312; RIP_Alu_chr13_068_01 GGCTGGATAGATAACAGGCAA GGCTTACCACACAAGCCATT SINE Alu Ya5 aattacagttaaactttcttttgagatggagtctcgctctgtcgcctaggatagagtgcagtggtgcagtctcgcctcactgccagctctgcctcccggg
tccacgccattctcctgcctcagcctcccgagtagctgggaccacaggtgcccgccaccacgcccggctaatttttcgtgtttttagtagagatgggttt
caccatgcaggatggtctcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccaaa
attacagttaaacttctataatggctggatagataacaggcaatttacgttagatggtcagtgaaactctacgaaggaaagtcatatttgaaattAAGTT
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAA
ATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTt
caagaatacaaaaaaagagcaattcataagaagattccagagaagaaatttctagcagtcaacagtgcaaaggcactgagtctagaaatggcttgtgtgg
taagccattacaatgggggtactaaagtggagaggggtgttttcaggtgagaacacttaagtaagcagtaactgaaagctgtatatcttctgcaccatta
ttttcagaagtctgtatttggtcaaaaatagttaacattttctgtattgcataaaacctaaccctatattttgatgaatttaaaaaatgtttctgcatat
ttaagactaaattttatttacttcatcaaaaattagtcatttgtatatcatatgcttatggaatgataaccaagtaaatgaatataactgctcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 484 189 NA intergenic
0 chr13 87801285 87801607 1000122 0 - Ya5ac2336; pAlu13-87839827; 238759; RIP_Alu_chr13_087_01 GTATCACATGAGGTGCCTTGATT GTCCTTTCCCTAATTCTAATGTCTG SINE Alu Ya5 gttattgctttcctgaagcttttccaaaatccatcatttccagacaaaactagttattagcaaaacctgaggtgttaaacatgatattcacaactttaaa
ttaatatagaataaaatactatggatatagttcataagctaagaaattattatatgaaaatatttctgtatgtgtaaagttgaagtgtgtatcacatgag
gtgccttgattaatatgttggtaagatttttaagaaatttgtattgctttttatttaaaataaaattattactgtatttaaaataaaataaaatttcttc
agcattagtagccattagacatcttttagctcaagagtcagactctcattcattcagtacagagtagaattggtaaatgatactctcAGAAAAATACTAG
ATTTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA
AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAAAATACTAGatttagatatcagacattagaattagggaaaggactgttacagtactatggtgaaaaaatgtaa
cagaggagaaaaaatgaaaatcatttctccctttagaatataaaattttaggatgtaatcccttttttagataagaaaaacacaacttagtcatatgttt
tcctatgggaagagacaagctctcacaaagacatagaaaattttctccgccgaaatgaaaaaaaaaggaatatcttgccaattttttctttttctttttt
cttcttgattaagcctttttatatcacaggggagagaaaattgattagaagtatttaaatgtttcatttggatgacattattttttagtttcctacttga
tacaagatttattcaaagattga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA 585 250 NA intergenic
0 chr22 14733465 14733466 1000123 0 - Ya5533; RIP_Alu_chr22_014_01 TGTCATTTTGCCGAGAGATG TTCCTTCCTACCAATAACCAGA SINE Alu Ya5 atttttctgaagtcatacccccccacacacacaccttcagtgatgtaagattacttatggtgcaaataatttggcagataacccaggtgacatgacgact
ttataaaagagatactgctatcatagatgtaaaagccagaaggaacaagcaacgtggatactgatcctccatcatggcctttagttatgctatcagattg
gaaacagaatcaaattcttagctcaagtacagcagagttttagaaaaagggaggcttgccacaggcacaaagcttagggaaatttgaggagagacacaga
gaaaaacaaacatgtaaactgctctctttttatgtcttccttcctaccaataaccagatatctactccatttctgtacttcattcaacaaattaAGATTT
ACCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA
AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA
GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGATTTacaagaccgtacattgc
tcttttgagaactcacctaaatttcatctctcggcaaaatgacaggtcatctctccttgccatcgttacttcaaccaactgacacagtttcgtttttatt
tgcattgcatggaccatattcccaagcacacaaacgtacctatacagacatagagacaataaaaaaattatcagatacagacacaagataaggcattcaa
aatactttaaccatcaaataaaatgaactaaacgtaagtttgaaaacagtaagacatttatttataggagagcatacacaatttctggttaccttgttgt
cacagcctagtttgtgtgcagtaaagaatggcaaattattttatcaattactatcaatatcaatgtgtgacaggttt Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 408 125 NA intergenic
0 chr14 58964124 58964125 1000124 0 + Ya5ac2408; RIP_Alu_chr14_058_02 TGCGCTTTAACACCAGTCAG AATTATTTGGGGATGGGCTC SINE Alu Ya5 tattgctgtacgtgtgacctcgggaaagttatttagccatgccaccctcaatccctgcatatgtaaaccagggcttataataataccttctgataggtgg
ttatgaagattaaatgagagatatgcaaaagcccaattccagtttttgatcattcttttcaaagtgtctcacataattctctggctactggtacatgtag
attattaaaaccagggcacaaattgatagtgcactgctttatcacaacactgctgttctgctaaaaccctcagccacatttatctcagaagggccaggac
cagatggacactatcattgacttgagtctataattatttggggatgggctcaagtcttgcatttttgttttttaagatactagGGTCTTCCACTCTCTTT
NNNNNNNNNNGGTCTTCCACTCTCTTTaggaaaaagagcgaatgctttgccagccctattatcctctgactggtgttaaagcgcatttagtgggaatgtc
attaactttttcatgggaaagatgaaattggccagcaccctgtttctcccttccagttttgctgtgctcctggctgtgcctagagagggaaatccaatga
agcgtgaggtcaggcagcccaagctcttccccagggtgcactcagccagcaggcctcggtcctaccttgaggcaaacactccttctaaatgtttatttat
gcttttgaacccaaggtccaatgggaacatgaaacatatgattccaaaagagattaccccccacggatttcttctaccacacacagagaaaaggaaaacc
atgtataagc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 352 127 NA intergenic
0 chr14 86927818 86928136 1000125 0 + Ya5ac2409; RIP_Alu_chr14_086_02 CTGGATCTTGGTTTCCCCTT GGTTTAGGATTTGCATTGCTG SINE Alu Ya5 aaggatttccgtttaacttcactttcctcagtccatttcatacatcttgaaacttattattcaactattatgttatttcccaatttgtctatttgctaca
tttcaatggccttgtctagatctcatagtccctttcactcattgcttccgttgttatatctacataggatattttgtatagattcataaaaatgttaaaa
tatatgtatactcactcaatacttactcaattagccctaattgccagacacttaatagaatttggtgggatcacttctggctttcataaaaacttgggca
cttttcaactactccctctggatcttggtttcccctttgtaaaagatgaaaaaaatgaaaaggaaaagatatcgcacaatagttatatttatAAAATCGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA
AATAAAAAAAAAAAAAAAAAAAATCGTaaagctgattgtaaaagtgacagaagaaaatatcacagcattgattctacaaagactcctttgattaacagca
atgcaaatcctaaaccagtcttgtaaatgtactgaaaaaaagtcattaaatttcagtaatattcactctctccctggtcttaaacactgttagtagaatt
atagattggttaactcttttagaagctaatttggcagtatatatcaaaattacaactgtgttttgcttatgacctagtaattctactttacaggtaccca
aagatgtatatataaaagtgttctttgtatcatttattgaattagaaaaaggtaatggacaatacatattcactggtaaacaagtgaaaacattttattg
aatatgttggaggtatgaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 499 172 NA intergenic
0 chr15 66976380 66976381 1000126 0 - Ya5ac2465; RIP_Alu_chr15_066_01 TGATGGAGTTTAAAAAGTGTCAGC AGCTGCCCTAAGTCACCAGA SINE Alu Ya5 aaaacctcctgaacaacatgttctcattaactgttatcatcctcatgacagctttcttttactagagacttgtgctgtgcttactgaatcctcacctctc
ccctgtcaggcgggtattcttattgtacaggtaaatgaggaaagagccagactctgctccctagaaatagccacaaactcagccaatgtgtaaccagcac
cctgtcaggtcagagtgctttgtccacagaagtgctcagggccaagtggaagcagacagagcttctcagctgccctaagtcaccagatacttccattgct
tgcaactcctgatattttagacattatagaaatgataaaatagggttacaaaaatcattatgtatttgagatgcttacatttaataAGCTGACACTTTTT
NNNNNNNNNNAGCTGACACTTTTTaaactccatcaaaatatataattcatcatcattatggaattcacaggatatttacaggatttataaaaaataaagt
gagatcagtgattcatcactacttttataaatcctgtaaatatcctgtgaataccataatgatggtattctacctaccagcagtgccttccactaatggg
atccaacgctgaagctgtaagttgcacatctctttcttctgtccttgttggtttatctctgtgatcacagatagaacctctttgggatggatgtaaggtc
caaattctaaatttaagggcctctgtgaatttgaagcccaggacacaataggccctgaatggaaggaaatattgaaggccacccttttaagcccatcagt
aagctcataa Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 463 145 NA intergenic
0 chr16 32960442 32960738 1000127 0 + Ya5ac2487; RIP_Alu_chr16_032_01 TTTCAAATGCCTAGTGCAATTACT TGCACACACGCTCACTGATA SINE Alu Ya5 atactgcaggcaataagaacacagtggtaagagtttatgtatgtaaacatacttaaacatagaaaagtatgtaaaaatatgtattctcatgggaccaatt
ttgtatatgtaatccatctctgacagaaatattatgcatgacttgactctatgaaaaaataatacatttttaaaaatggacacatgtatcaaacatatta
ttataaaaataaaaatatttattcagtgtaagaatttgtaatgatcacagcttatatttaagtacagtttcaaatgcctagtgcaattactatttatttc
tttgtgtattttaaacatgtatataataaatatttttcaggttcaacaatatatatcaatcctacaggctcttataaatattagttAAAATCAATTGGTA
GGCAGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAAACCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAA
TCAATTGGTAaattcatgtatatatatgcatacctgtatcagtgagcgtgtgtgcatgtatgtttgtgtaaatgtaattgtatgtgtgtgtaaatgtaat
tggatgcatccttatatttacccttacctacaagatttccaagattcatttatgatctttagattatgggcatttaaagatttaccaaatacaactgtaa
tagtggaaaatatcaagatgttattaaattcaacttgtgcacataattgtttctataaatttatgtttcttgcaaaactggcagtaatgctcatgcacaa
aataattttctaaataaaaaataaaaacgttttctcagtcattaattcttaaaattatttctccccaataattaatgtgaattaattcttaattct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 490 179 NA intergenic
0 chr18 25883689 25884004 1000128 0 + 238589; Ya5ac2585; RIP_Alu_chr18_025_01 TCTTGCAACCTACATACGCC TGTGCTCACTCTCCTGACCA SINE Alu Ya5 gtagcttaattgtagccagtatagagattgaaaaattgtctagtaatagataacaaatacatagtaattattattcatcaggcactcttttaattgcttt
acacatatcacttttttcaatctttgccaactgatgaaaaaggtgttattattattcacattttattggtgataaaactcacaaagttagtgtgacttac
ctaagcgtcacacagatagtttattaaataatgaacatttgagaaccggcagtccatactcttaacactctgtcactacaccctctaagaaaagtagtct
tggtcaccatatacactcttgcaacctacatacgcctatgttatgccagattggagacaattttgttcagtatatgaaaataagaatatcAAAAGTGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGTGAGAaaactatgccaatattacaccaacagagccataaacttgggggcaagatcagaaaacatggtcaggagagtgag
cacaggcgttgtgtggcaaaagaagtcagccctacctgagcccacaccaggatatcccctactattcaaatcctcacaggagtccggttttgcctttatg
acactgtgcttgattgtaattgttcgtaaaaatatgtgcataataatgtctaatcatttgctaaattgtattttcaggtagaatactatgcctgacacat
tagaagtattcaataagtactttcaaaggattccaagttgaatactcaggaaaagggaaactaaacagaaaaaaaaaattataagcaattcctaaaactt
tgcaaaagacaaatta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 488 161 NA intergenic
0 chr18 49179991 49180298 1000129 0 + Ya5NBC244; Ya5ac2596; RIP_Alu_chr18_049_01 TGCAAGTAACAAATGCCCAA ACAAGCACTGCCCTCTGATT SINE Alu Ya5 ggtttatcccttcaaggtgctaccatagtaattatttgactccaccttttttatttccttgtatgtagattcagtgtcacaaaagagagaatattattgg
catcttttgagacaggtgatcacacagctaaggagaagatgggataagaccatggaattcccaactgatattgctaccaagctttcatgatatagaggag
agcttgttttccaaagagaaaaaacaagtcctcctttaaaaggaagaggagaggatgggatgctggacagtgcaagtaacaaatgcccaatacaattcct
atggctgaaatcttctgaaacttaaatgttaccttccattcatgtacttaataaagaaatggaagtataggaaaaaatgagagccAAAGAAATCAGAGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAATCAGAGGGcagtgcttgtctagtggaccaagatattaattaagggtttttaataatgttaatttataattgtcatgccttgagat
acgaacttggtaaggagaatatagtctatgtctttgagcgaattgtggtccaataaaaaagaaaaagcatttttttaaattcctgaagtaatatcagaaa
tataatcataaaattgtggacaagttaaaatcagagcaaacaaagtacagattctgtctggaaaaataagaggaagtttcacaaaataaatgaggtttga
gctatggcttagttgaattatcacatactaattccagggacttccaaagaatggaaaactcatgtgcaaaaatacccaagcaggtgtcagaaagatgatg
tgttaaag UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 453 130 NA intron:DCC:NM:005215:18/29
0 chr18 44250159 44250458 1000130 0 + pAlu18-45884052; 79823; Ya5ac2608; RIP_Alu_chr18_044_01 TCGTCTCTACCTCCAAGGAAA TTTTGGCTGAAGTCCACAGA SINE Alu Ya5 gaaagaaagagagaaagacaagaaaagaaaagaaaaggaaagaaaggaaggaaagaaagagatgtattattccaatcaatattcctgggggagagttacc
accacaaaaagataatacttaggcaaattaaccctaaattggaagtatcacaacatattttgatccaagaaccccagatgtactatgttaaatactcctt
ctttcctgctgtgtctcgtttgtatgctggaccagatagagaacaggaatgtgtaacactattttcattccattccaacaacaaaaaatatcaagcattt
cctactgctctgacactaaataattacaaaagacacaaccatgtacagagatgtcgtctctacctccaaggaaaacacaatctAGAAAATAGGTATCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAAATAGGTATCATGggtctaaaaggaaaccaaaactgaaatgaaccaatctttaaaaataaagcaacataagagccttatctaccaaaatctgtgga
cttcagccaaaacggaatttaaagataaattcatagccttaaaatctatatattagggccttagaaagaaaatcaactaagaatccaactcaagggcaat
gtggtcatggtggcagtaggtttcccaatctccctataacctctcctgacaaccaagtagagcagataggatgcagccccccaaaaacccaccacctcag
ccaacaacaacaaaaatcccacctctaacctctaacctcttcaaccaaattaggtgacaggagacctatcaaacctgaggacatggacaaatacgccaaa
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 459 142 NA intergenic
0 chr18 53822135 53822426 1000131 0 - Ya5ac2617; RIP_Alu_chr18_053_01 TGACAAGCACAGGACTGACC ATTGGCTGATTCCAAAGCAC SINE Alu Ya5 caatagacttatatttaacatactttgcttctgcccttttctttcatttgatgtttgtgggaaatatttgtggtgagctagaattaaaagtctatacttt
ttcattggagcacttggtcagagcagagtgctcataagatttagatcaaatgtgtttgatccctaccagcccagaacctggaacaggctactatcccagg
agagctaatcatggccacataggatagtggacaagagtcagggggacctcaggagccaggagactccagacagtcagcttaaatgtcttgctttagaact
ttcatgtggcagcaaccttttattcaatgtctattcatttgtccctgattagtgacaagcacaggactgacccattgtagctgtttAATAATAATGTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAATAA
TGTTTGtgcatttaaagacgctgtgctttggaatcagccaattttgcagggcggaggaagaaaggaaactggtttgccatctggcatttacaaaatggga
aacaaatgcattgactttttcttcctctcaaaacttcacaaaaatggcaataaagagactgttttctgaagacataaacccataaggatgaagagcattg
aagagaagataacagataacaatagaagataaaaatttccaaattttgaaaattggagaaatgcttataaagcggcttagcagagccaaaaaaactgaat
tcactcttgaacctgggaggtggaggttgcagtgagccaagatcgtgccactgccctccagcctgggcaacagagaaagactgtctcaaaac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 390 84 NA intergenic
0 chr20 30362897 30363195 1000132 0 + Ya5542; 238005; RIP_Alu_chr20_030_01 TTTGGATTTCCAACAGCTCA GGGGGTACGTGGGTGTTACT SINE Alu Ya5 aaaaactggagattgagaagcgggccattgtagaggatcacagcttggttgcagaggagaagatgaggctgctgaaggagaaagagaaaaagatggagga
cctgcggcgggagaaggatgctgccgagatgctgggcgccaagatcaaggtaccatacccgtacccttccttaggcccttgccctgtcactgcttttgct
ttcatcaaacaacaacaaaaaacataaccatatgagggatgatgtctctcatcagttttggatttccaacagctcatgatatccagtactcagtaaacct
ctgtttaattgacatgaatatgattttttcacatttacaaaaatgaaaattgaattcataatgagaataattattatgtatgcacatagtataaAGAACA
GCAACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT
ACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGC
GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAACAgcaataaaagtaacacccacgtacccccccacccagtgtaagaaatagaacaacatccatttttctttttttttttttttttgagatggagtttc
actctcgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaacgtctgccatccgggttcaagtgattctcttgtctcagcctccagagta
cctgggattacaggtgcctgccaccacgcccggctaagttttgtatttttagtagagatggggtttcactatgttggcctggctggtctcgaactcctga
cctcaggtaatctgcctgtctcagcctccccaagtgctgggattacagacgtgagccaccgtgtccggcttttttttttctttctttcttttttttttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 477 185 NA intron:KIF3B:NM:004798:2/9
0 chr20 6098954 6099279 1000133 0 + Ya5_550; RIP_Alu_chr20_006_01 GCAGACATTTGCAGAGAATCC CACCAGGGTTCCACAAAGAT SINE Alu Ya5 gatgttattgtatgtggtccgggcgtgggatttgggatgctggacaaatggttattatgacttacttccaaaggccctctttgcttatttgcttcaccag
ctttgaatttcttggcaaatcctaatggaaactcacctatgtaatgggcttgaatttgactacacaaactcagatgtgcaagacatgcatgtcatgttat
ttttcaagaataaatttaaatctgtatctgagtcctaatctttctgagctgctgggatagtacatctcattcattgttggagtttcctgtctgcccccat
cccaagtcaggtataagcctcagagcagacatttgcagagaatcccatggtatccattaacaagctcatggtttaagtgcacattatcttttaaGAGTGG
ACATCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA
AAACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAGTGGacatcctttctgtggaaatgagaatctttgtggaaccctggtgctttggtccagttgtactgggggca
tcaagtagtcacttctcctgagatcctgcctctagcttgaggtgtggcaaagaaacaccaactaatttctcattccaaagcttggacaacctcactcctt
ttctctctgcttctgctatactgtatcaaaggcacctgtttctcccccatttctccagtaacctcaggcttttaaaaacagagggcaaacagggagatgt
tcttatatacctttttgtgttgcgtccagaaaatacatcctatctgattcttctataaagaaaacacagtatctaaatacgttttcctagcacagttatt
tctatgtttagttcctcttacaggat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 451 119 NA intergenic
0 chr20 44560939 44561246 1000134 0 + Ya55632; RIP_Alu_chr20_044_01 AACAAGGGGAAATCTGGACA CAGGCCTCTTCCCTAGCTTC SINE Alu Ya5 tttacatgactgcatccctggtcaacatcttgacagcaacctcaaagaccttgagcctgaaccacctagccaagttactctacaattcctaaaccacaaa
aacaatgagatagtaaatgtttactgttttaagttgctaattttggggataatttgttacacaacaataaataatacattaacctgttatggggttgaat
tgtctccccaaaatgtgtgttgaattcctatacccaagtacctcagaatgtgaccttatttggaaataggattgttgcagatgtaattatttaagatgca
gtcatactggaggagggcaggcccttaatccaatgactggtatccttataacaaggggaaatctggacacaaacatgcacacttAGAATGCCATGTGAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGCCATGTGAAGttatgctgccacaagctacagaattatcagaagctagggaagaggcctggaacagatccttcagaagagagtatag
ccctgccaacaccccaacctgacttctggtctccagaactatgagatgtatctgttgttctagaacatccagtttgaggtactgtgttacggcagcccta
ggagatgaatacaccctctatatcatgtctttgttctttggctacttttaagataatctttattaaactagttttgatttctttatgtcttgaaatttgg
tgtcttattgtgctcttcatttttatcctgcttggggttcattaaacttcttggacttgtgaatttacattttccgtaagatttgaaaaaattgttccaa
cattaaga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 424 75 NA intergenic
0 chr21 46212101 46212400 1000135 0 + Ya5NBC24; RIP_Alu_chr21_046_01 AAAATTGAGAGACGAGGAGAAGGT CCTCATCAATACTGTAACTGTCACAAC SINE Alu Ya5 gtttccccggcacacacacctcacaccatacacaagaatacaccccagtggatttgggatctgaatgtaaaaaatgaaacaagtactagaggaaatacag
gtgaattcctccataccctgaatatgaggaaagatttttctaggaatcaaaacaaaagattaatttgactacatgaaaataatagcattctgcatggccc
aaaacaccacaaaggcaaaggaaaattgagagacgaggagaaggtgtgtgctgcacaatcacagatgcatagctaatattccatatattaaaaaattcaa
tatttgagggggaaaacatcaaaaactcaacagaaaaatgggcaaaagacatgaaacatgaatagatcatttctccaaaaatgtataaaaatGATCTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GATCTTTAattatatgaaaagttgttcaacttcatttggaataagaaataaaaattaaaactacagtgagaggtcctctccaatctcgtgttgtgacagt
tacagtattgatgaggccgtggcctctcactggctgacgactccaagctgcacagccgtgcggaaggcagttcaatccgataaaactccgtgacccagca
actccacgttacgaattcacaccgaagaaaacctccaacgataggaagacttgtaggcacaaggtcatttgatgcagtataattggtggttgtgaaatac
cggaaaaaattaaatgctcctgtgtagacgtgtgttggctaagctaaggtactgccacatagtgccttcatgcagctgcacagagaatgaggatggtctc
UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 595 286 NA intergenic
0 chr21 13502317 13502621 1000136 0 - Ya5448; RIP_Alu_chr21_013_01 AAGAGTGCACTGTGGTTGAAAA GGACAGCCTGACTTAATCTCAA SINE Alu Ya5 gagtagaagcttcaaagtacagatgtgctgaggaacaaatgcatgcttgttacttttaaatcacttgtatatattctaatgttctttgtcctcttggagt
ctccaactcagattaatattttattacagcagttactgtttttaaaatggacagcctgacttaatctcaatttgttaacagtgatttaaatgaaatatct
ttgaataattaatattaagtattcatggtatataaaagactagttagctaggttaactttgcttcataaaaatgaagtgattgaagtcaatgtacatgat
gagctatatttcttgaatgcctttatacttgtatttgttgatttgttggaaagaaacctgaacatttattaaggtttcactatatggctAAAGAATTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCTCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAATTGTAtacttttcaaccacagtgcactcttttttttgttattaaataagaagccttaatttaaataaaaatggagatttgcttgttagat
gattgtttttaagaataattgtgttttgtttctacatgcagaagctaattttaaatacttattgaattaaaaagaaaaaagtatgcaaaattataaaaat
tttggccagtatttttactgcttaaatagtgtaaatcatttttaaaagtcattaatttacctattaggaataatcaatggatgttacacagcatctttct
gtctctattaagaaagattttagcctggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcagaagattg
agac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 592 277 NA intergenic
0 chr1 58832215 58832529 1000137 0 - Ya5ACA618; pAlu1-58417239; Ya5NBC347; RIP_Alu_chr1_058_01 GCTACCCTCCTATGAGTGACAGA CATGCCCATTGCTTTACGTT SINE Alu Ya5 tgactgtcaacaaatggggctgttctgtttattaattgctgagcagcaaacaacaaaactggcttgaacatactaacattttactatatctcaccattta
tgggtcataaattcaggcagggcttagcctggagacacttaggcttcatagagctttgactggggctactcagtggtattcaggtggcatctggtctggt
ctgaggatcctggatgtcatcactcacatgcctggcaccccgctggggacagcgggagactgggctgggctcagctggacccctccccctctccatgtgg
tctctccagtggggtagatggactcatcccatggtgcctcagtttgctaccctcctatgagtgacagagaaattgtgaaatgaaagataaTTCAAATGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGATAATTCAAATGATttgaaatgtcatcttcagtacacataattaacgtaaagcaatgggcatgcaatttttaataacaagtcatttgtt
tctctctatgcccaccaaatagatgtgtccatgatttttttaagtatcagtttgaagaggtgctactctgccatcctgtccaaggtgccactgtcactac
tcaccctgtgggagtgagttatggggctctcttcctttctcaatagcccacttggtctagagcaccaacctgtctctctcatggtctcccagcaacctcc
aatctgatcttgctgcttccagtctcacctcctgccactcatcctccatatagttttcctgcgatttttctgaaacacaaatctgctcagactattccct
tgcctaaattcaatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 447 104 NA intergenic
0 chr1 229369701 229369990 1000138 0 - Ya5ACA593; RIP_Alu_chr1_227_01 CAGAGCCTTAAGACGTGAGAGTT GGAAAGCTCAGAAAAGACAGGA SINE Alu Ya5 gcactgcactccagtctgggcaacagagagagaccctgtctcaaaatattaaaaaaaaaaaagaattacaaatattaaaatatttttacctgtgatcaca
gtgcaactatgactccatgttctttgtcacgtatgtattatcccttttaatagaagaggtgtttcctctgagcctttaaagcctaacataccctttttac
aaaataaggtaagacagcaggctgagaagccacctgccctttggcagagccttaagacgtgagagttggctgggtgcagtggcccacacctgtaactcta
gcactttgggaagccaaggcaggaagatcacttaaggccaggagttggagacaagcctgggcaatgtagtaagaccctatctcttAAAAAAAAAAAAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGACattagagtgatcaaaagtcctgtcttttctgagctttccaggccacaccctctcccttgcttttgtgaggtgctgactcagtgggaatagtactc
ctggagtatcagtgagattttcttttaaggctcttcgatttaccatggctctcaaagaactccagaagaagagcttatctataaagaaaaaagaattatt
ctctaacctcaacttaggaatcaactcctacccagtttaattcagagctggccatctgcacccagcaggtcagagttctccctgagtgaggagttataga
tgttgacattctgtggcatgtcacactaggaaagagctatggtacacagtaacccttttctccagcttcaggaaaaacagattttcataa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 500 195 NA intron:TRIM67:NM:001004342:1/10
0 chr1 116272643 116272945 1000139 0 - Ya5ACA636; RIP_Alu_chr1_116_01 ACTTAAAGTGTTCAGCGGGG ATTTTCCACCAACCAGGACA SINE Alu Ya5 tgtataattagcagtttcaagggatttacagtctaccaagaaaataaaacacgtgcccaataaggccgctttgaagaattatgtgataaaagcaatgaga
gttgtatatctcatgtgcttgctgcacatgactttgagcaatcttgtgaaaacattctgcctcaatctctttcttaatatagcagagtcctagtgagata
acatcagagaacagaagatgattggtgatttattacttttcagtttttacaagtttaaagtggcttatatgacaaatatcgaagaatggtcccacctttc
ccagagtagggagagaccttactttagtctgtggatatgtttacttgctgactgtcaatgagaatgagacaatgacattcacttAAAGTGTTCAGCGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTGTTCAGCGGGGagctctggactatatttttctttttctgttatgattcttgcttgtctgaagccttatttcttttggtcaatacctgtgcta
aatgtcctggttggtggaaaatactgttaggttcagattcattgaaattcatggcaaaaatgaaagaaagtccttaatcaaaggcacaagatagattttg
caaagaaattacagccagaaaattaatccaaaatgtgctttggtttgggcttctgtacaagcacgtcttggcggcaggtctggactcgaggttgtgggag
ctgcaggagtggaaaatggaaatggctcatctgcacctgccctttctccagagatttggctcatcatcctctcccatgacacacagggccagtccacact
cag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 442 139 NA intergenic
0 chr1 79886774 79887077 1000140 0 - Ya5ACA647; RIP_Alu_chr1_079_01 ACGTAAGCCTCAAAAAGGCA GGCACTGCAGATACAGTGTGA SINE Alu Ya5 aagcaagtcttttgagacatctggaaatcaagtcagagcaaattaccataaattatttatatatttagctatgtaagaatgtatttcagtttttggaatc
actgtggtttatctatttaccaatagaaggcaatgaaaacaggcatgttttgtctgctatgtacatcatctagaattaaaacaaaagtcagttttactga
atagggccattcatgctgtatactgtacaactcctaaacatactattcatgtaggccacaatataaataaatggtcatcctctttcctgaatctgtacaa
ccatttttggtgattatgccagattcagcagaaaaattagatattttaagtcagtgtttctagaacgtaagcctcaaaaaggcaactAAAATCCTTTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATCCTTTTAGttcacactgtatctgcagtgccgatactaatgcttaggttatagtaggtgctcaattaatatttagtgcattaataaatggta
aaactaatggcattgaaatcaatagtagtgattaatttaaaaaaatagaattctgacttccctcctgatttgctaagtcagcatatcaagatgggcatag
agattaaaagattattctaagcataacattttggaaccagcattgttgatttcacatctagctacaagactaaactggcatataaaattcaggatgtata
cagggaaagcaccaattctagtcttcaatgtaattctcaagtggtggttttctggtaagtttgtagacaataatacttaggagaaaatgtgtataaaaga
ctaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 375 58 NA intergenic
0 chr1 86655036 86655340 1000141 0 - Ya5ACA662; RIP_Alu_chr1_086_01 CCTGCTGCTTCTGTGTTTCA TTGCCATTTTCACTGACTGC SINE Alu Ya5 gtagtcaaatgacaaaaatgtagttcaagtttaagcttataaggctgtggttcttaatgcctcatccataaatgctccataaatggcagctgattctaca
gtaattattaattagtataattatcagtactgtcagctggagttctcttgctccccagagaagtaggtataattggcttttacctctgtcaatttcatgg
cccatggaagatcaagcccctcctaaatttctgcaactatgctgtatgcttgatttctcaaaactcctgcttcccagatccacacctgctgcttctgtgt
ttcactacattgtcttaaatgtagtatttggaatttctcaaagaaccatgtatatactgtgtttgcagcaatttagactttactAAAGAGTTCTTAGGGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTTCTTAGGGAaactggagaggtatttatatcacagaaaaaaataaaacttaagcagtcagtgaaaatggcaacattcttgtaagggaaa
tagctgcactttagtcaagagcaggccgaggtggccttctggtgcagcatgactcagtgggtttggagcacagggcacaaccctgcacattatgtaacca
cgtgacacgaggtgcattaggtgatcacccatgtgagctcgtgcttggcttggagccattattgtctgtaaaaggtataattaccttgctaacactgtat
atacagcttgctcgcatccagagagagagagtaaagccatgtcaaaactgtctatgattcctcaatgtttttccagctacctaccacttgcccaccgact
cccct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 499 176 NA intergenic
0 chr1 209028652 209028960 1000142 0 - Ya5ACA766; RIP_Alu_chr1_207_01 CCTAAACACTCCAACCAAGCA CCTCCACCCTCTCTCAATCA SINE Alu Ya5 gcaatgaagacagaatggcttatctgacaaagatctaaagcaacaacaaaaacaacaataactttctataaaccctcattattttagaggtttggagaag
ctaaatccttcacagagatgcttcccaagattcttgtaagctgagtatggagaggagggggtaccccactgcactgccatcactgtggtgcattgctcca
cattgctccagggacttgaagttgctaggtaaatattgctgccacttgccatataataatgttgtttgctcatgcttagcacagagggaggaggctatgt
gtcagtgtcaccctaaacactccaaccaagcattaatactcatacagctgttccatctgaagcaattaaactaagtccgcacttttAGAAAGAAGCTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCCGTGTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAGAAGCTATAatatgaataatctagaatttcagaaatgcaaaaccacttgtatcaggtagtgcacacattacctgattgagagagggt
ggaggcggagaccagttctctttcctaattctgtgtttgcttaagtaattttaaaaattggtttacagtccccgaagacactggcagctaggaaagttta
ttgatctttctaaaggaaattttcataactttatagtgtctagacagagggattggttgaatcataaattgtggtaaattaaggcagttgttatgataat
gatatgaagaagttttactggcatgcaaaatgtttcaaatataactttaagtgggataaaagcagaatatatagctatatatagagtaaccttaactaga
tcaaaatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 493 172 NA intron:KCNH1:NM:002238:9/11
0 chr2 215479770 215480071 1000143 0 + Ya5ACA792; RIP_Alu_chr2_215_01 TTTGCTTGGAATCATTTCCC ATCCCATTACCCTTTCCCAG SINE Alu Ya5 ctttattttaccagccatgaagcataaagaatattataagtagttctctatttgttttttagtgaaaaaatttagcagtctcccatgtattcatataatt
aagttcagatttttttccattatgtcctttatgtaatcagatgatgatttcttagacatttgaccaagttttatctttcttttaattccgaaacatttca
gatccataaaaactgatgaaaataaattagattttacagtatactaaatgatggactatttaagaattacttaaactaatttttggaaaacaaattcttt
acattaaaaatatatttaaaaactaaaatagctgaactatttagattttataacttaccaaaaaaaacaaagtagaagagaaaagagtattAAACCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACCTTTTaaaggaaatctttctttactgggaaacctacttaagaaggacagatgacactgggaaagggtaatgggatcttctgtaatgctgatgac
agcaatgaggtggtgatggggatagggatggaaatcccccatatggttaggaagctaagatgtgaaccaactgattttgaattaaaaattagaaccatct
tctgtaagacttaaacacaggaaaatcacaccaactcagcgtccttaattgcttttagtatctctgttctagttcatggtctttctttcactttcctgta
ttttcaatcttatggtcaggacaggtgcatgctgttttaattagcatattcacacctggaatgcaacaacttagaaattacctgcagtcacaaagaatgt
ct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 913 602 NA intergenic
0 chr2 218254404 218254701 1000144 0 + Ya5ACA804; RIP_Alu_chr2_218_01 GACCGTGCTTAAGACCCAAA CATTTCTCTGGGAGTTTGCC SINE Alu Ya5 aacaaaaatctccaggtattctatgatcagccaagtttagagaccactaacttctggcacaaactgaagaggggaggggtgggaagattcctaaaactgt
cctagaaatgctattatcatacaaatagaattggttaattagatacaagtattgtcattgacaaatacttcctaggagaaacagctagcacagggcaaac
ccagagaagaaagggcatgagacaggagggagctgaagaggaaggtcactgggtgccagagactcatttcaacaatcccacagttttacctggggccaga
ccgtgcttaagacccaaaaccagtttatgtcaggttgatgataggttaaaccaacacatctgttagccaattcaaactaattttttAAAAATCAGCACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGTGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAATCAGCACCAaaaactaattgagctcaagataaagcacacagatatggcaaactcccagagaaatgattttaaggaaggatagcaaatttcaaaatct
aactgaggcatggtgacccagcaggactgcagaggatcagggtacctccaaagttgtgaaaatcctgcagacaacaggctaaagaaaactgattccaaga
ttgctgatggaaccaagcagggaggggttgagactgcttttgtctgcaataaaattttccactggtcacacatttcttttttcttttctgagtttcaggg
tgggtgagcagatggctggagcattggaagagagtgagttcaggaatctcactaagaagggcaaagtaagatgaaagttttggggtcaggattgagac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 470 158 NA intron:DIRC3:NR:026597:1/13
0 chr2 50562405 50562709 1000145 0 - Ya5ACA807; RIP_Alu_chr2_050_01 ATCTTTTTGGGGGCAGTTTT TCCTGTAGTGAGTTTTGGGGA SINE Alu Ya5 aggaatgtcacaggtatttaaactggctgtcatttggatgagacaaaaggaaaaaactgaaactgtttgtacccaatttttacctaaaggtaaatttaaa
aatttaaagccattagatgaagttagcttggcatggatttatatccctgaactcgcaccccatctgccacactgttactggcatagagtgggtttaaaag
aagatggattactctacacgctcccatagcaatttcactttattatttcccatttagcatgcccaccaggtttcctcacagtctgttggccaaacataca
aacaaaatctgtcttcctgttgtaagtttcagaatcatactttaaaaaaatctttttgggggcagttttgtttcaaaatttaaatAAGAAACAAAAGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGAAACAAAAGTTCagaatattgaaagaattatatgttctgttgatatggataataacaatattaactccccaaaactcactacaggaaaacgt
taaggtctaaactcttatcttcttggggttgcccctccccaacttgtcccacgtaagtgctggtttgtactagattgggccatggatacatacaagtgtc
tgatttatctctttgtgggagacaattgaaaagtaactgctgtatctaaaaatcaaatgttgacttttggtaaaaaacattttgataaaatttgatttaa
aaagttttgaacataagaattctacttatgtatcagaatttgaatacctaatatttataattatggaagaaaattgactttgcctttatgagattactcc
attat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 445 125 NA intron:NRXN1:NM:001135659:16/24
0 chr2 107292829 107293154 1000146 0 + 52792; Ya5ACA814; RIP_Alu_chr2_107_01 TCTCGGGAAATTAGCAATGG TCAAGAGGCTTTGAGGAAAAA SINE Alu Ya5 acaaaatatcatgtcatcagcaaagagggacaatctgagttcctctttctcaatttggatgccttttattttttctcttacctgatttccctagctagaa
cttccagtaccatttgaataggggtgatgaaactgagcatccttgtcttattccaattatgaaagaaaagactttcagactttcagctttttcccatgaa
tatgatattagcagttgatttgtcatatatagcctttattttgttgaggacattgactaactcagttgaacaagattatgttagaaagaagaaacaaact
ggaatgggttgttataatacttaggtggtaagataatgagttcagtttgagtccttggcaaatctcgggaaattagcaatggcttAAGAAAGAGGGTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGGGTCTTaaaagcaattttgagtcctctgttttttcctcaaagcctcttgagtagtttgaaatgtg
caagaaaattatggcttgccgggcgtggtggttcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcgcaaggtcaggagatcgagact
atcctggctaacactgtgaaaccccttctctactaaaaatacaaaaaattagctgggcatggtggcgggcgcctgtagtcccagctactcgggaggctga
ggcaggagaacggcgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggctacagagcaagattctgcctcaaa
aaaaaaaaaaaaaaaaaaaaaaaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 423 82 NA intergenic
0 chr2 231704440 231704744 1000147 0 + Ya5ACA868; RIP_Alu_chr2_231_01 TGCAGGAGTTTTGCTTTCAG TCAATGTTTCAGCAGGCAAC SINE Alu Ya5 gttgaagaaaccagttatctctgttttgtttcccatggtatgaattttgctgagtgcatctttacatgtagtttaatgtgttgtttggtccttcacattt
cctgtaaattgacagttgaatctacaagcttgatcacattcacattttttttagggtggtggggctggcggtacacacagttatttccattttcatgatg
ttagcagtcgttgataatcatgctgcgatctattcattatatgttacaaaatggtgatataattttatcatttattaactgttcctttaaaagtttatat
catatatctctgtgtgtatatataaagattaatgtgcaggagttttgctttcagtgaatgtttgcattccaatcattgcttAGAAAGTTTTTTTGCCCTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAGTTTTTTTGCCCTTttagagttgcctgctgaaacattgaaataaacatataagaatattatggttttactgtactcttgaaaagattgaa
tgtctaaactaatttaataaagaatttctcatttcttgtcttaacacttgttttttctaaagaatgtgtcagagttggaactgttgttagattgagacac
tgtcaggttttttatatgcttttgagtttatagccttcacagcctatttcagtctttattgcaattaactaggtaaagttctgcattaggctcctggtat
ttatgttctcaggcaaaattttttctaaacctcatggaattgttagtgccttttgggaagcaaaacttaagtctaacttctatcccctttcagaaaactt
ttcta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 415 91 NA intron:PSMD1:NM:002807:16/25
0 chr2 173859991 173860291 1000148 0 - Ya5ACA924; RIP_Alu_chr2_173_01 AAGGGTGTGATTCTTGGAG GGCAATATACGATGTGGAAG SINE Alu Ya5 ttagacatataaaactccttctacataacctccaacctgtcacaagcaagggtgtgattcttggagctctagaagtttattataataaaaaattagagct
catgcctgtaatcccagcactttgggagactgaggtggggagatcacttaaggctgggagcctgagagcagcttgggcaacataaggagaccccatctct
acaaaatttaaaaattagctgggcatggtgacgtatgcctgtagtcccagctactcgggatgctgagtggagaggatcacttgagcccaggaatttgagg
ttgcagtgagctgagactgcaccactgcactccagcctgggcaacagagcaagactctgtctccaaaacaaacaaacaaaatggatAAAAAGTTAAAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTTAAAGAGaattcttccacatcgtatattgcccattacaaaagatttctgctgatctctatcttcttcaggggagcatggctattttctttca
atttattgctatgacatgtcaggaggtctttctagctcagatttttttccctctctattaccaaataaagcaatttgtcttattttggatcagaataata
atggtaattaggtcataaggcatattgctgtgaaagtaaaaattcgatggagtatctttgaagcatgttaccaggatactttggagttgggtttgtggaa
aacatgagcttaaattaaggtaaagttttgatcctcagcagtactgcttgaacctgataacaaaactgtcactgaatgccagtgcacacagaggtccttg
t UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 693 377 NA intergenic
0 chr2 194106754 194107078 1000149 0 + Ya5ACA949; RIP_Alu_chr2_194_01 CTTTGGTGTTTGCCAAAGTT TGGCACAATTGAAACAGGAG SINE Alu Ya5 cccatatactcaaatgatgtacacaataatgtttcttccatagataactattgaaaatctgtagaatctcaggtaaaggttatagaaacggttcctgtga
tgcaaggaaatggaagagaattttaggctgctataggctgcaagacagaacagaataatattctgaagagtgtagtcttggttgattaggattatgggag
attcttgaaattaaattatatgaataaatttatgaggaaaaagggtcttgatgttttcactctgatgacaatgtttgatgtaaagataataaggtggaaa
ttataagctaaaatgttatctactttggtgtttgccaaagtttaaaagagatgaacagtgagatacaggaaagacaacttgatttAAGATATTTCTCATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGATATTTCTCATTatggtcatactttaactttctatagttcagtatttagtctcctgtttcaattgtgccaga
tgtaaattttcatttttttttcattttggattagaaccaaagatatatgttcagataaggcgaacttctatctatggaactgacttataaaaaacagaat
gtcacacaataaaattacttatttccagtgttatgaaggtttttaaatcttttccagaacactttttctttatagaatggagaaaacaaagaaaaaatat
acatacacacacacataatttgaatgtatataacctcatccattaaatgttgatttcagatacggaaacatcattttgtctctcctggctcttggttact
agctaatagccaatcaggatcatat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 476 136 NA intergenic
0 chr3 17923558 17923862 1000150 0 + Ya5ACA1003; RIP_Alu_chr3_017_01 AGGGTCATCGTCAGGACAAG TAGAGGCCCATTCCACAGTC SINE Alu Ya5 agcccagcttagaccaagtgtccctgggctgagctgcagatctctgaaaataaatgaatgtaggtttaatccactgacatttcgggtagtttctttggta
gcatttttgtcgcaatacataggtagactggggtcaacatctgatctctaaaactcaccagctgtgtttttgagctatacccacccttttggatggtact
cttacatttaaatggggcaagtagtatttatctttagggtcatcgtcaggacaagaaattatacatgtaaaatgctgagcttggggcctctatttgtcca
tttgcattgctataaaggaatacctgagactgggtaatgtataaagaaaagacgtttatttggctcacagttctgtaggctgtatAAGAAGTATGGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAGTATGGTGTCagcatctgctcctggtgagggcttcaggaagctttcactcatggtagaaggggaagtggagccagtgtgggcagatcaca
gggggagagagggaagaagaaagagaggagggaggagtgtcagactcttttaaacaaccagctattgctggaaagaatagagcaagaactcactcattca
tcatttcgagaatggcaacaagccattcatgtgggatccacctttcatgatccaagcacctcctactaggccccacctccaatattggggggtcaaattt
caacatgagatttagaggggacaaatatctaaaccatcaggcccttgaagtttctgctatagcacctggcccatgcgcccaatgtgtgttgggtgcgtga
ataga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 957 637 NA intergenic
0 chr3 59100274 59100589 1000151 0 + Ya5ACA1054; pAlu3-58979974; RIP_Alu_chr3_059_01 ACATTCTCATCTGGGGCAAG GCTGCTAACAGGAATCACTGC SINE Alu Ya5 gttatagattgacaaaaagacacacacacacacacacacacacacacacaggcgcgcgcgcgcgcacacacacacacagccagtgcctgatttaaataga
gaaggacatagaaactaattggaagtaggatggccacagatatcatggcaaggcttattcatggcccctagttccctgttgaagcacaacaggtcctgca
gactggggcacttctgttataccatgtatctttcatgatcaaagcttacatcatttttccagcagaacttttatttctgtttaagggaaggttgataagc
cttatgcttttcattgtgaatcatatatcatcagcaggccacattctcatctggggcaaggacatagtcacagaacagatgcttctaaaGAAGATCTTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAGATCTTTGcctccagttgccagtgctctggaaggccaatttccatgcacattgttacttgaatttgcatttttctgactag
cagtgattcctgttagcagcactgtgagaagatcaagttggaccgtttagttgtggaaaattataacgtcaatagttttaggtcttttggcctgctaaaa
ctcttcagggaaagtaaaggctttgtcgccaactttctggtaactgcatgggggaaaaatctggaagtcttaatgtatagtatggatacatttaatgaat
tgttctgttttcagtatgatgccccatcccattctcaactacacttggtgtcctcttattttaccatctccaaaatttaaaaaataagctattttgccag
gataggagagggtatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 480 153 NA intergenic
0 chr3 128813221 128813533 1000152 0 - 22588; Ya5ACA1070; RIP_Alu_chr3_128_01 CGGATCCCTCAAGGATGATA TCCCCAGCTGACTTCTGTCT SINE Alu Ya5 aagggtgactcatctgaccatcctaaggattaggccaaaattcaaacctaaaaagtctggcttcagactgcatgctgcttctgttagttctttaaaatct
ctaagtgttgggcatgaccctgatctctttaatactttaccagatcagtgtccagggcccacggaaggcaggcagggccatgaaactgacagagtagggg
acggggtaaacctggggacacaggccctacctgcaagggcagctatgcctcagctccgtcagcgttaccagagaggaacacagagccagcacccacagat
cttggattttcaaaaagcatccggatttctatgtgaagtctccggatccctcaaggatgataactaactcaaaataaaaacaaatacAAAAAGTCAGCTG
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGTCAGCTGcagaagcctgcagggcttcctgctggagatggaatctgcagaagacagaagtcagctggggacaagtgagggag
aaggtgctctatgtagacacaaatagcaggcatcaagacacgggagcggggtagggctgcctccatttggggaacaagtcgttttggaacctggggctcc
agaagcacatggggatggcccgggcagatgccttattagtgcccaggcatgccatgcccgccacacgctcacctatgggtctctcacctcttcaatcaac
agagtgggagattagtggctgaagctcaaggcaaaggaagagaaggtgccagaagagagttcctcaagcatgcagctcctttggcgtggtaggcacagac
acagataatcatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 442 120 NA intron:MCM2:NM:004526:8/16
0 chr3 156131068 156131373 1000153 0 - 4679; Ya5ACA1100; RIP_Alu_chr3_156_01 GCATCCTACAAAGCCATT GCCTGGGCAATAATTTTCAA SINE Alu Ya5 tcattatttgtcaacagacaaatgggtagatgctaggagtaagtagaggagtaagtaaattcagagggaattttttttttgaagaaaccggggcaaggtg
agggtggctttagtttatgatattacccatgctcgctattatgactgtgcttcctgtactaatttccgtatctgttcaagctgaatccacatgcctgttg
attggtactttgcttggtttcagggacctctctcaaatgtagcctagagcttctgaataaaaaatatcaagttaagatatttgatgaaagtttttttcta
cttgtttgccttgatttatatagtgcatcttacaaagccattgaaattaaaccacatatccataatctgttaagaaaaggtaagtAAAAGAAATAAGGTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATAAGGTTatatgaaattgggactattttgaaaattccaggaagtatgctggcatatatttctcaattgttttctcaacattttgaa
aattattgtccaggctgtagatcatgttgtcagtggcttctccccatctaataaaatatgaagaccctctccaccttttggaggaaaatgctggtatctt
ggagtttgatactaccgtgtagaaaccaatatactaacttgtaagagacaaaagtttatttactccacgtattgttgaaattttatcataaaaactgata
ttctttgggaaaatgattataaaagccacaaattttaacatctattcggttgtaatttaaaaatacctgaattttcagccatttgcagtggctcatgcct
gtaacc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 492 170 NA intergenic
0 chr3 177625727 177625728 1000154 0 + Ya5ACA1130; pAlu3-177545061;1104685598701; RIP_Alu_chr3_177_01 AAATGCCTAGTAGGAAAAAGGGT;NA TCCTTCCCTGCATTCATTCT;NA SINE Alu Ya5 gttccctaacacaatctattacacataatgaataaaaattaatctcgtggattaaagagataagtcagacacaaaactgtaaaacaggaaaggaaaatga
taattaatttaccttataaaattaaaatcttcctttagaaagaaataattaatgaagttaaaaacaaatgacagtttgggtgaaaatatatgtatcttac
tcaaaaggttgatttctatgagaaagaacttatataaattaacttgaaaagaaaaaaaaaatgcctagtaggaaaaagggtaaagaaatataaacaggac
actcacagaataaggaatgaaaagctactaaatgtatcaagcaattatgagaaatgtcaaaaaagagagattttttccccctgattAAAAAAAAAAGAAA
TTNNNNNNNNNNAAAAAAAAAAGAAATTaaagactaaagaatgaatgcagggaaggattcagaagaactggccttgacatgcattgttagagtgaatgtg
gtccatggggtctaaatggagacagtctagcagtttttactacattctaaaatgcatcgccgggattggtcgctcactcctgtaatcccagcattttggg
acgccaaggcgggtggattgcttgaggtcaggagttaaagaccagcccgaccaacatggtgaaaccctgtctctactaaaaatacaaaaactagccgggt
gtggtggtgggtgcctgtgatccgagctacttgggaggctaaggcaggagagtcacttgaacctgggagtcggaggttgcagtgagctgagatcgcacca
ttacactctagc Other;Venter - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 55;NA NA;NA NA;NA NA;NA intergenic
0 chr4 59302363 59302666 1000155 0 + Ya5ACA1161; RIP_Alu_chr4_059_01 AGTGGGAATCACTATGATGG GTCTTGACCTCGTGATCTGT SINE Alu Ya5 tgtattaataaatgacacattagtaatgtgtcatttattaatacatgtgtcatttattaatacatgtgtcatttattaataaatagttttccagggtcat
gagtttagggacaaagtctgttttcagtcattattgttagttgttttctgagttcatctctattaataccttggaaaacacagccaataacaatgaacat
acagtattaatactctgtatttctacctatagcctcagggttttaagattactagacattatctgagtttcaaatggtcaaaaacaagatttgccagaag
ttttactatcataaagtgggaatcactatgatggcctgggttcaagttttcacagcagaaacttatgtaattgtaagtcctcttAAAAAAGACAACACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCAGCCACTGCACTCCAGCCTGGGCGCCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGACAACACTGctgggcgcggtggctcacgcttgtaatctcagcactttgggaggccaaggcggacagatcacgaggtcaagacatcaagg
gcctccttgtcaacgtggggaaactccgtctctactaaaaatacaaaaattacctgggtgtggcagcatgcgcctgtagttccagctactcgagaggctg
aggcaggggaatcgcttgaagccaggaggctgaggttgcagtgagccgagatcacaccattgcaatccagcccggcgacagagtgagaatcggtctaaaa
aaaaaaaaaaaagacaatactaaattataaatataaaattaggtacaaaatcaagtacttgtttataatgagaaaataaataaattacaaaataattaca
aaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 479 159 NA intergenic
0 chr4 66437986 66438250 1000156 0 + Ya5ACA1168; RIP_Alu_chr4_066_01 TGCCTTATACGGTTGTTAACCC TTCCTTTGCTTTCTGTTACCTG SINE Alu Ya5 ataataatcaaagaatttgagcaattattcaataatcaatgaatatcactatttagtgttaagcacccttccaagtacttggtaaaacagataaataaga
cagttttttacaaaagaaggtaactgtctaatgaagaacacacatacacacttaaacaatatattacattactttgtaaacattttctacaatagaagaa
gtcattagtgctataaaaatacaaatatgatctgtatgatgcggcctggtgactctggaagattttattctcaccttcttcaaaaaatattgaggaccta
tttacatgccttatacggttgttaacccttaggatacaaagataaagcagatctcctgcacttaatatttcatggtctaaaagtcAAGAAAAACAAACAA
TTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAACTTGCAGTGAGCCGAGATCCC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAAAAGAAAAACAAACAAatatatagaaaaagtaatga
atgttatagtggaaagttacgtaacaaatttatgggataaacatgaatattaaagaggaagtttccaaaataaaatatcaggtaacagaaagcaaaggaa
cacatatggaaaaaaacaaatttcaggagaatacaatgtacagaggagtgtttccagcagagcgtgcctataggaattagccaaggagaaaactagagat
atgggcaaggccaggtcaggagggccaatgaaactatgattgagaattttggatcttttttttagctcattctttatgtttttgcttctaaattttcttt
cacataagaagcaaacattctgatattttgggttacaattatacctttgaggaaagttttctaag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 493 214 NA intergenic
0 chr4 253969 254238 1000157 0 + Ya5ACA1185; RIP_Alu_chr4_000_01 CAGCTTAAAGGCTTTTCCACA CCTTTAGACAGTCCGGAAACC SINE Alu Ya5 gcagagcttgcagtgagccaagatcgtgccactgcactccagactgggggagagagcaagactctgtctcaaaaaaaaaaaaagagagaatttgaagtct
ttgccacattttaatttttcatatggcttctcatcaatatcatttatcttatgtttagaacacagtgaggtgtggttaaaagctttctcatatttttcac
atttctggagtttctctccattatgaattatcttacgattagaaaagattgaggaacatttaaagactgccacattcttcatattggtaagacattcctc
cagtacgagttctcttatgtttaagaatgctggagtacagcttaaaggcttttccacatcctttacacttgtatggttttatctccagtAAGAATTCTCC
CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTA
GCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT
CCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCTCCtatgtacataaaggtttcc
ggactgtctaaaggctttgccacattcttcacatgtgtagggtttctctccagtatgaatcctatgttcaattagggttttggagctattaaaggtttta
tgacattctaaacatttatagggtttctcaccagtatggattctcttacgtttagcagaatttgaggatgaggtaatgactttgccagattccttacatt
tgtaggtgttctctccattatgaattttctcatgtttatttatgggtgaggaccgtttataggctttcccacattctttacatttgtaggattcatctcc
catatgaattttcttatgttcactcagggttgtggaccatctaaaagctttgccacattcttcacatttg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 378 96 NA downstream:LOC654254:NM:001137608
0 chr4 98400301 98400605 1000158 0 + Ya5ACA1204; RIP_Alu_chr4_098_01 TTCTCATCTAGAAGCAAAGGATGA TGACCAGAACAAAACTTGCAC SINE Alu Ya5 tttttaacttctttgccatgggttcaaacttcctcctttagcatggagtagtttgatcatctgaagccttctttgcctcttctagctaactataaaaagt
atttattgtttttaaaatgttgcacatctttaataaaataatgttggttaaaggagttttttattttgaaaagtactctgtaaatggcagtcatttattc
acctatccattcatgcatttatttatttatttatttattgctttattctactaaagaatgaagtcatctaaatcagtagaacactgattaccaaacctct
gtattgtttcagatgctatagtgacttctcacttctcatctagaagcaaaggatgagtaatatttatgacaacctattcattttAAAATTATACCCTGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTATACCCTGCTaattcaaatttggttttacatgtgcaagttttgttctggtcactttttaagttatgtttcagtgagaaataatcagatt
gaaacttgcaaatatttatcaataagatggtcagtttatatagtgctttaacttggcagcacctgcttcaatttctcctaacttcctgaaaaagcttgga
aaagaaatacgtcattcgtatttctgttcaagtaacattccttaacgaagccttcctgaccttcctgtgagaaatgatggtctttcctctttctccccat
gttaaggtactttccaacttggccttattttctttaaaacatgtatatcaatgggaaatcatcatttttgtgtatgtattatttaccttctttccaacaa
ggtct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 431 110 NA intergenic
0 chr10 60654928 60654929 1000159 0 + Ya5ACA1250; pAlu10-60877322;1104685134451; RIP_Alu_chr10_060_01 GACCTGGGCCAAAATGAGTA;NA TTTCTGAGGAGGAGGAGGAA;NA SINE Alu Ya5 ggttttctttttgctcttcacaaaatcaaaacaattctcttatttttgttgaaattttggtagtctgttgaatgaaaagattgagaaatattgactagac
ctctaaagccatactcagaaagaggagtatataaatctataacataaaaatagtaactctgctatttactcttatctactaatattataataaactgcat
aagaataatctggtgaatgctgccagaaatgtcaagttaaaaaaccaaaaaggatgaaaagtttaaaagtctgataaaaaacttactgttcttaatatat
attaaagaatttccaagtaagatggtacttttgggcatgagcatcaaactatcccctccataagacctgggccaaaatgagtaaGAAATGAAAATAGAGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGGAATTGAAAATAGAGGaaaactcttcttaacaataaaacttatgtaaggattccatcaacattatactccctgagtaatatgtgtc
atataatttatccatggaatcccattgtaaaagtttgtattcctcctcctcctcagaaaatcacacagtattgcaggaaaaatagtaaagaagctcttgg
aagatctgtgctgtcaccctgtgattggatagagtgaaggatggacagctagcaacttcacttggaattttccttgttgccatggattaataattattga
aagcagatatgctaggggccacagaaagtgaagctttatctcctgatggtaatgaggcttacctctaaagtggtaagacacttctccatgggaatcagca
attcaagggaagaa Other;Venter - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 60;NA 496;NA 170;NA NA;NA intron:PHYHIPL:NM:032439:1/5
0 chr4 142146391 142146691 1000160 0 + Ya5ACA1259; RIP_Alu_chr4_142_01 TTTTGGAATACAGCCCATTTG GCACATTCCAAGATTAAAGTGG SINE Alu Ya5 caagtattgaggaattccatattcggtgttaagcagaggagaaggagcctacagatgagtcagaaaagatatacccaagagataggaggaaaaaccaggc
aggaccaatgctacaattaggcctgctaagagagaaagcattgttttcagggaccagaactgtaggataagtaagcttccttaaggtggtatgagggtct
atgcactgcacaagtacttagaatatttttcctgaattgcagataaaacctatgagaaatgtggctacaacaaattgagtgttaaccaacccatcttaca
aattgatttttggaatacagcccatttgtaatttgagtatatcatgtactatgacagaggaacacgttttactttagttagataagaaATATTTTAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA
CATATTTTAAAAGaatggaactatttttttctaataccactttaatcttggaatgtgctataatttgaatttctatttttaaaagctagaatgaagagta
ggaaggaaattatatatatacacacatatatatacacatatatatgtgtatgtatatatatacatacatatatacgtatatatatacatacatatatacg
tatatatatacacacacacacacatttctccatttcttgggcatttttcttttgtctttgaccactttagctgtcagttctgtaatctcctataaactaa
ttgaactcttccttctgtgtgacagcagtaaaattgatcaacaagatccctgggaaagtgacatctggcaacaaggaacaatggaagggaatacagctaa
t UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 451 138 NA intron:RNF150:NM:020724:1/7
0 chr4 167114739 167115039 1000161 0 - Ya5ACA1274; RIP_Alu_chr4_167_01 AAGCCAGATAACCTTCTCGGT GCTGAGATCAAGAGGCCAAC SINE Alu Ya5 acataagcaggtactgccacggtattttggcaatggagatttggagctggcaatgagaatcccatcctgggttgttggagcttcagcaaaaaatagcctc
tgggatataatataagtataattattaaatctttctcttgtactgatggtaaattgtaaaaataaatgctggtgttatatatccagagtttgtgcaatac
agggaaaatagtaactctaaggatagtaaattgggtagctaatgctaaactccattaatgcttgttaaatgttaacaaaagattggtcacaattaatgaa
tcattaaaagctatgagtgaaagccagataaccttctcggtaatatacaaaaatactgtcatctcctacagcttgatagcagagaaaactAAAGATGAGG
CCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTATGAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAGATGAGGtccaggacttaatcctaagagttacagagtgcagttggcctcttgatctcagcaggtcagctatgccagggtacagttctactttgaaa
cccagacacatgggatgaaaaaatataatcttgaaactccagacttctctgatcctattaagaactaacgctggttgggcacagtggctcatgcctgtaa
tcccagcactttgggaggccgaggcaggtggatcacctgagatcaggagtttgaaaccagcctgaccaatatggtgaaaccccatctctattaaaaatac
aaaaattagctgggcatggtggctcacacctgtatttccagttgcttggaaggctgagacaagagaattacttgtacctgggaggtgcagattgcagtga
g UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 444 133 NA intron:TLL1:NM:012464:1/21
0 chr5 125427899 125428200 1000162 0 - Ya5NBC18; RIP_Alu_chr5_125_01 AGACCATCTTTAAGAGGAATACCATGT GAAACGTAAATTTGTTAATAAAGTGGTGAC SINE Alu Ya5 tttcctcatttttacttgctaaacttatgccttcttcaagagttactctctttgctagtgctatgggggcagcattgtctgggtttatgattctggatta
atgccagtgtctatattaataagaaaggaagggtgactctgtcccgatatttagcaggggcagggagttccctcagtttatctgacttgacatggtaaaa
aaaaaaaaatgaatgaacatgttagtatgaatagctataaagttgggagtctctaagcaaggagctccaatacagtgatcaatgtcaacaagaatgttgc
catagcatagaccagtatgctttttaattgatggagaccatctttaagaggaataccatgtggtagtaacaaaggcaacttcagctgAGAAATGAAGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGTTAACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCGTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAATGAAGCTCatagtacaatgcattatattgtacttgctctcttttccctgtgcacatttttttgtgtgtaacatgttctgtttgctttagcggg
tcaccactttattaacaaatttacgtttcctgtttctttaaagaaccactttcaccctgaccacattgctagagtgtcactatgttccctaatcaatttc
tgtaaacacataaccatggggtccatacagcttcaagagtcacatttgacatgccaatcctgctgcatgctcctggctgctttggctgttgtgccacttg
agcagtctcgccatgttcatagggggtttgcattaatagttacagtttttttctgtgcaagtacctctcatcatcttctgtcagtgttttgcttatttgt
tt UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 65 495 180 NA intergenic
0 chr5 131988139 131988491 1000163 0 + Ya5NBC1; RIP_Alu_chr5_131_01 GGAATAGGAGATCCAGTAACTTC GTAGTGTTCAGAGACAGCACTTTA SINE Alu Ya5 ttaacattacaatgttccctgggtccaaaatggctcatagaattatatgcctgcaccaaatgagaacttttgttttttaacttctttgaatattgccatc
tctcctagatattagatccagcagtttaaagtggttagtcttggaatttaaggtgctgaaacaagaacataagcaaaacttaaggaattcttgcccagta
gactacacatacatatatttgttttttgttttttggttttttttgcctttaataattctttttagtcttctcagctacctcatttatgcctttaggggac
tttttagtttttcttagttctttaacaacagatgctgtgtatctaatagacttatcaaacattcattgagcattaaggaataggagatccagtAACTTCT
AGCAAGGATATTATAGTTTATTTGAAGAGACACAAATCAAAACAGATTTTTGTTGGTAAAAACCTATTTTGCCAGGCTTAGTGCTTACGCCTGTAATCCT
AGCACTTTGGGAGTCCAAAGTGGGTGGATTGCTTAAGTCCAGGAGTTTGAGACCAACCTGGGCAACATGGCGAAACCCCATCACTACAAAAAAATACAAA
AATTATCTGGGCGTGGTAGCACACACCTGTAATCCCAGCTACTCAGAAGCCCGTGGCGGGTTGCAATGAGCCAAGATTGTGCCAGTGCACTCCAGCGTGG
GTGACAGAAAGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAATCACCAAAACTTCTttttggaataagataagttggttgtgatggaaaaataaaaa
tggatattaaaagcaagacattggactttgtataaaagtccaacatgataagttttaccttttttaaaaagcctcagaagtccataatacatggttaaaa
gtgctgtctctgaacactacagatgtccagattttgaattctttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcg
ggatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccg
gctaattttttgtatttttagtagagacggggtttcaccgttttagccggga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 544 185 NA intron:RAD50:NM:133482:21/25
0 chr5 22832383 22832685 1000164 0 - 1159; Ya5ACA1318; RIP_Alu_chr5_022_01 AAATCATGAAGAAGAACAAAGT TGTTGGCCATTTATATGTCTT SINE Alu Ya5 agctctctggatctttttttttttttttttttttttataaaggcactgatcccattcatgggggctccaccctcataatctatttacctcccaaatgccc
ccctccgaatactaaagggttagaatttcaacataggaatttgagcgtgacacaaacattcagtctacagcaaatagtcccctgatttttcattaggctt
cccttgctttctatttttgacatggataagaccacccattattaactctttgcaatgtgttgtgagattagacacagagtcagttttaaatcatagtatt
attttatgaaacttgcttttcctcctatgatataattccttactattttatgtgagattaaatcatgaagaagaacaaagtatttAAGATAAAAAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGATAAAAAATCTGaacagaagtttttcaacagaagacatataaatggccaacaggaatatgaaaaaaatgttcagcatcctactaataactgaaa
tgcaaatcaaaaccacaataaaataccaccttactccaattagaatggatattatgaaaaagacaagataaatgttgtcaaggacatgaagaaacaaaat
tcatgcactgttggtgggaatgtaaattagtaaagccattatggacaagagtatggaagttcctcaaaaaattaaaaatagaactaccatatggtccagc
aatctcataatggggtatatatccaaagaaaatgaaatcggtattcgaaagagatatcagcacttgtatattattgcaacacctttcacaatagccaaga
tgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 400 81 NA intron:CDH12:NM:004061:1/15
0 chr5 168327024 168327321 1000165 0 - Ya5ACA1370; RIP_Alu_chr5_168_01 TCATCTTTTCTGCCAGCCTT CTAAGCTGCCTTGCATTCCT SINE Alu Ya5 aaggaatggcatatttaatgggaggggagagataaatcattcttaatctttatgttcagggaggagaatggtaaggaatcttaaaaacccactctccttt
ccaaggcctggggagagccatgaggaaggaatttgaatgcctgccagagcaggtgagcaaagcttgggaagagaatctggtgcaggcacgaaagtgctag
caggaggtacgagagtgtctgaaatctctactggagagtgcagacatcatcttttctgccagccttgcatggtgggaagtagagtgggaacccgaggctt
tattcttcctgcagatgaaggctgaccacaccagatattgtgattgtagagggacaggtgcaatgaaaggaatgaaaaatccctcAAAGATTTGAGATGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAGATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGATTTGAGATGGcagtgccagaggaatgcaaggcagcttagaaaaattatgacgcaagtgttatatatttactgtagagaagttacatgagacagagaa
gccaaaaaagaaaaataatttaaactcatgattgttcacctagaaataatcactagcaatattttggtgcaattttaccccagtgtgtgtctctcttata
tacacatgcacacacacatttatagcattggattatactatatgtactctttggaaacctaccttctcactttaaaaatatatacagagcatttttccaa
attcataaataacatcctttttaatggctattgttcttccattgtagtaggtgggccatgacaactagctcctacagttgggaaatttaggtggtttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 496 183 NA intron:SLIT3:NM:003062:4/36
0 chr5 109325006 109325307 1000166 0 - 21141; Ya5ACA1376; RIP_Alu_chr5_109_01 TTTCAGTCTTGGACCATTTCAG TCTTCGACTCATGTTAGGCAC SINE Alu Ya5 cttcgctatcctggaaacagactctcttaataagtgctgtaattatataattcttaagttccaggctccactagcaagtttgagaataagggaagtatca
caaaaaaataaaaagcagaagaggttgcaagacccaaggaaacaccactcagctggttttctatgtatcaagagttatgcaacacaaatgttctcactca
gaaatggatcctgatggcattacttttgtactgaattaagttccttcaaaaaacagtttcagtcttggaccatttcagttatgtgagtcaataagtcttt
ttgcttaagctaggtcataaggtatatgcaatttatgcatctacattataaggctttcataaataactaaacaaggtaatggatAGAAAGTGCCTAACAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAGTGCCTAACATgagtcgaagatacaataggcacagttaaatgtgagctctcttcctctcccaactattttcactttattaaatccacacttaa
attggacattaaagtttaaattgttattagtaattccagtaaatttcattattaactcagttaattaccatttctcctcttgtagggctctgaaccctct
tccatcttcttatgctcaattgcaggagagaggaaggaggaagaatggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaggagggagggagg
aagggagggagggagggagggaaagacacagaaaacctctagccatatgcacaatctctctctcttttacctgtcctattggaaatacggactaggactt
ca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 472 154 NA intergenic
0 chr5 133790522 133790816 1000167 0 + Ya5ACA1400; pAlu5-133793787; RIP_Alu_chr5_133_01 AAACTGAAAATGCAGGTGCC TTCCTCTGAAAGGCTGGAAA SINE Alu Ya5 ccaccgcgcccagccttccagctggtccttatttatcctccagcactttcagctgttctgttccgattttgatccatgcaacgcgggggatggggggaca
atccaacaggtgaatcctctcccacccccagaaatggctcaaggagacctcctagtgggttacaggaccactgagccatggaccccagggtcacctttct
tcccaccacagtcaagctcagcacataacttaaatgcatagtggtcccggaagtgtcaaggagaacaaaatgcccatttttttccctccatacacagcaa
aactgttctaatacagccaaatgaactggagaagcagttttattcttgcccttcctgccgaggaaaaactgaaaatgcaggtgccgagaaaatACTAAAT
GGAGGCCAGAGGCGGTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAA
CATGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCG
CTTGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAA
GTagagagtgctcttggagcagggtttccagcctttcagaggaaagttggaaaacgctaaaagttttcaaactttgggatcttcagctcttacagaagta
tctaaatcccagctacttgggaggatcccttgagcccagaagtccaaggccagcctaggcaatgtggcaagacttgtctctaaaaaaaaaaacaaaacaa
acaaacaaacaaacaaaaaaacgtaaattctaggttgggcacggtggctcacgcctgtaatcccagcactttggaagaccaaggcaggtagtttacttga
ggtcaggggttcgagaccaacctggccaacatggtgaaaccccctctctactaaaaatacaaaaattagccggacatggtggtgcgttgcctata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 677 379 NA intergenic
0 chr6 12772190 12772496 1000168 0 - 52592; Ya5434; RIP_Alu_chr6_012_01 TGATCATGACCTTCGTTGGA GTCTCTGGGCCTCCAAATCT SINE Alu Ya5 cattacccccttagcaaaacctttcatgcttcccacacctggttatgacaccttttgctataagctgctttagaccattgtcagaactcttcttgggaca
tttctcttcagagcatattgtggtaaccaatgaacctgtgatatctcccacgggctgctagcatgttaacaccacatctgatatacacctgtgtctgtca
tggtacttatcctagagcttcacaccaggggtctactttttttagattgtatacttccattatatttaaaaaacatgttctagcatatatcactgtcgtg
ggttgaatatggtgaagtcctgaacgccgttacttgtgatcatgaccttcgttggaaacagggtttttgcaaatacattcaagttAAGAAGTCATGCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGTCATGCTGGattagggcgagttataaatccaatgactactgtccttatcatgaggaggagatttggaggcccagagacatgcagggg
aagaggccttgtgaagatggaggcagggattggagtgatggagctgcaatgcaagccaaggaccaccatgaattgctggcaaacactagaggctaggaag
aggagaggaagtgttcttccctggggccttctgagggcatgtagcccagctgacaccattgggtttgaacttctagcctcttaaattgtgagaataaatt
tctgctgttttaagccatccagtttatggcaatttgttatggcagccctaggaaactaatataaccacctctatggaaattaatataaccacatatatag
gtggtta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 455 133 NA intergenic
0 chr6 89480886 89481179 1000169 0 - Ya5ACA1441; RIP_Alu_chr6_089_01 CAAATGCAATTGGAGTGTTCA ATTGGGCTAAGCACAGGATG SINE Alu Ya5 tgtacattgattttgtatcctgagactttgctgaagttgcctgtcagcttaaggagattttgggctgagacaatggggttttctagatatacagtcatgt
catctgcaaacagggacaatttgacttcttcttttcctaattgaataccctttatttccttctcctggctaattgccctggccagaacttcaacactatg
ttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtt
tgtcatagatagctcttattgttttgagatacgtcatttcacaaatgcaattggagtgttcagtttacatttttaaaagtacttttAAAAAGTACTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
TACTTTTActttcagcttgagtcactcttcccaggctttatccaggtggcttaggttagctagggctgtgtcccgtgatgtacagtccctttacacaatg
ttggagataaaacttggcctcatgtcttgcttcatattcccacagcctctcagagtcctgtggacaatgactagggagacaaaccatgcaagcaacatat
tttttaaaaggtcagtttcaataatgacttaattttaagttataatttcatggaacactttcatcactttctttttcacagtattttacccagttattaa
ttaatctaagtagtgtatcttcgggaggtaagacagttatttccattttatagatgaggaaatcaagaaaagtcatttagtttatgacttatcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 849 541 NA intron:RNGTT:NM:003800:13/16
0 chr6 105328659 105328957 1000170 0 - Ya5ACA1467; RIP_Alu_chr6_105_01 ATGTGGGGAATGTTTGGGTA TCCCCCAACTATTTTCATGC SINE Alu Ya5 ttatacatggtgagaatcttgactgctattcttttgatacaatcttggggccagtaaacttaactattctgcgcctttgtgtcctcatttaaaaatgatg
atacctgcttgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaaaagatcaagaccatcctggtca
acatggtaaaaccccatctctaactgaaaatacaaaaattaactgggcatggtggcatgtgcttgtagtcccagctacttggtaggctgagggaggagaa
tctcttgaacccaggaggtggaggttgtagtgagctgaggttgtgccactgcactccagcctggtgacagggcgagactccgtctcAAAAAAAAAAGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGAaaagatgataacctattttttgtaatgtggtaagaactcagttagctgatatgtgaaaatgcttagttggtgcctggcatatagaaa
gtataaatattatatgctattattattacatgaaaatgatattattgtatactaggatttttctgagagcatgaaaatagttgggggaatcacagctata
tatattttttgaacttaaaatttatcataaacttttaattctatttaaaattttcaagttaaaaactgttactccttttctgaagattttctccctatat
gtttccttttttttttttaaaaaagtctccttatctattctttttaagcatctagatttctcagaaagtaattagagaaggaattaaacacagagctag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 1011 700 NA intron:HACE1:NM:020771:17/24
0 chr6 119638149 119638468 1000171 0 - Ya5ACA1480; RIP_Alu_chr6_119_01 TCTGTAGCAAAGCACATGAC GGTTCAAGCAATTCTCCTG SINE Alu Ya5 ccaagtacacagtatcagtactggggtaattacgtcatctccatattgtagatacactgaagctctgagaagctaattccttagccatataggacatgac
agaaatgggattacactctgctgtctgtagcaaagcacatgaccgtgtccacatattattcccaaaaccagtgttgccagggttggtaccacaacttttc
ttccttttctgtttacttgcttatcagttacatacctaaatctcataaaaatgaaatagcagttgccgggcacagtggctcacgcctgtaatcccagcac
tttgggaggccaaggcgagcgaatcacctgaggtcaagagtttgagacgagcctggccaacatggtgaaaccccgtctctactaaaaatAAAAAAATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTAGctgggtatggtggtgcatgcctgcaatcccagctactcaggaggctgaggcaggagaattgcttgaacc
cgggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggcaacagggtgagactctgtctcaaaaaaaaaaaatgaactagcagc
aaccttctagcccatgaaatcttccacttcttgggcaacaaagaataattaagttatgaaaactaaaccataatcacactcgtaatgcttatgagttaat
aatagatttttgcacaagttgtgtttgaaaacatttattcattgcacttaagtctttctcaaaacacaaagctgtccttgaatttttaatatagttcatt
aaattgaaaaaattctcatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 677 346 NA intron:MAN1A1:NM:005907:5/13
0 chr6 65241884 65242187 1000172 0 + Ya5ACA1549; RIP_Alu_chr6_065_01 CTCTTTCCCAATGTCTCTCCTT TGTGCCAGGAACTGTGTTAAG SINE Alu Ya5 tggtacttttcacttatgttcctctttttggctacagtaaaggagaggaaacacatcattcaggaaaatggacagccacattttctttgaagctgagctg
attctcctgggtctcttggccatgaggcaatggccaacgggaaatataggtgagaaaacataaatttacaaatatctttctgttttattttacattataa
ttaagtcagcagaatactatcaagtttgaattaccaaagatatttttgtgttcacaagttcttataactctttcccaatgtctctccttaatttgacaag
ttttctcatgtggtatcatacactgtatttctgcctcatattatactccacaaataggttctacttcatagtttgctctgaatagtaaatGAAAAGAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAAAGAAAAaataccaaatacttaacacagttcctggcacatagaaaacacttcatatcaggtaaatatcatcatgattgtgtcctcggcccaat
tcttgctctattaaaaaagtcacttaaacacccaaagccttaacttcctcttttttaaaatggtaaaaggaataaaaaaaaatcatttaatttgtatgat
tgttgtattaaaacattactgttgtgatgttttttaagagacaagctctccattgcccaggggctggagtgcaatagcatgttcatagctcactgtaacc
tcaaactcctgggctcaagctatcttcccacctcagcctcccaagtagctaaggctacaggtacatgccagcatgctcagttatttttttgaaataactt
ttgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 479 165 NA intron:EYS:NM:001142800:26/43
0 chr6 67291997 67292326 1000173 0 + pAlu6-67185333; Ya5ACA1555; RIP_Alu_chr6_067_01 CGGTTGGTTTCAATGTCCTT TTTGTTGATCCAGTTTTATATGGC SINE Alu Ya5 cacataatcaaaacctcctgcactttagccagttataccgtggatttggatgagacaccaggaaacaacacttgtattcttcgcagtgcccttcatgtat
tgatggtactattacatccaggacatttaagtcaatatattcatagtatagtagacctgaaaaatactagagtgattttccatgtaactttctgattttg
ttcattaaaaaaaaagagttctctagagatcatttgacttaaggtaatagctggttggtcattcagctgagaacagaatacggatcctggatctctgtaa
aagccactattctacaaatagtagttacggttggtttcaatgtcctttaaaaatagcatgataatttttttacctaattctataaatAAATCAAATTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAATTGAAaataaagccatataaaactggatcaacaaatatctatttaaatttactctacttaaa
gtaacactagtctgagaatattgttttcttttatttataaataatgcatgactgataattataaataattatctggtgattcagtaagatcatccaaaga
ccagtatgaacaaaataatgtaaaactaaaattgcattttctataatttaaagggaaaatctctgacttctgagtttgtattttggtaagctaaatgtgt
ctgtttgcttccattcactattgcattgaaatatgcaataacgaagaaaaaaagtatacatttggaacaacaattaaatgcgtttccttaccttgcacga
agtaactctaaatatgattaattaaagcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 446 103 NA intergenic
0 chr6 74320604 74320924 1000174 0 - Ya5ACA1561; RIP_Alu_chr6_074_01 TGGATGAACTGTTGAAAAATATCAC TGAAAAGAGAGTGGGGCAGT SINE Alu Ya5 agtctcagctacttgggaggctgaggtgggaggatcgcttgagccctggaggcagaggttgcagtgagccaagattgagccactgcactccagcctgggt
gaaacagccagaccctgtctcaaaacaaacaaatgacaacaacaacaacaaacccatagtgtaacttgaaataatgtaaaaaaaagttattaaaaaacat
aatttatggccgggcatggtgactcatgcctgtagtcctagcactttgggaggctgaggcaggaggatcacttgagctcagagcttcaaaaccaccctgg
gcaacatagtgagattttgtctctattcggttaaattttttttttaaaaagacacactttttaagaaaatatggatgaactgttGAAAAATATCACTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAATATCACTTTTtttttttttttttgagacagagttttactctggcacccaggctggagtgcagtggcatgatca
cagatcattgtagcctgaaactcctggtctcaagcagtcctctcacctcagcctcctgaatagctgggcacacaccaccatgcccagctaattttttaga
aaatattttgtagagacaggggattgctatgttgctcaggctggtctcaaactcctggcctcaatcaatcttcctgcctcggcctcccaaactacaggga
ttataggcatgagccacctcacccactgccccactctcttttcatactaaatgcatataaagctgggtgcagtggctcaagcctgtaatcccagcactat
gggaggctgaggcgggtggat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 673 336 NA intergenic
0 chr6 95630414 95630723 1000175 0 + Ya5ACA1583; RIP_Alu_chr6_095_01 TTGAAAAGATAAGCTGCACA TTTGCATTTCCCTAATGACT SINE Alu Ya5 aatctcaaaccacacctcatactttattcacaaatacctcaaaatgggttatacacttgaatctaaagtgtaaattgataaaaatagtaaaagaaaacat
agaaaaaaatctttgtaaccctggattaaacaattttttctttaaatgcaatactaaaagcacaatctataagatgacaaataggctttaattaaaatta
aaaacttctgtaaaagttcctctgatcagttgaaaagataagctgcacacagggagaaaatgtgtgcaaattatatatcccacaaaaaaacttgtatgca
ggctacataaggaactctctaaactcaacagtaagaaagcaacctaatttaaaaacggacaaaagatttaaacagatacttcagcAAAGAAGATATACAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAGATATACAGatagtaaataagtagctgaaaagatactccaactcatcagtcattagggaaatgcaaattaaagtcacaatgagg
taccactacttccatattaaaatagcttaaacctaacaaactgacaataccaaatattgctgtattaccagttaagtctcagatacacttttttcttcat
tatctaatctgaaatcagtctcaattttcacatccataaaatgtggctgctaattaatgcttgtcctcacttgcttattgtgctgttgtgaaaaacaaaa
gcaattatgtagaaaacattttgtaaaatacaaagtaatttactaacataatgaaaaattattattgtggaatttcagtgaagatttgagaaaaggttca
aaatgcaaat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 556 229 NA intergenic
0 chr7 93796280 93796580 1000176 0 + Ya5NBC212; RIP_Alu_chr7_093_01 CATTTGGCGCAAGTGGTATT ATCCCAAAGAAACCCACGA SINE Alu Ya5 gataaagggagagctggcacatcagatggcaaaatcaggagcaaggtggggggtaggtgccgcatacttttaaaccaccagatctctcgagaactcactc
actatcacaagaatggcaccaagcagatggtgctaaaccattcatgagaaatccaccctcatgatccaaccacctcccaccaggcccctcctacaatact
ggagattacaattctacatgagatctgggcagggacaaatatacaaactttatcgattactatacataaagtagataagtcaagtgtgcaagtctggagt
acagaagaaagtctaggccagacatgcaaatttgggaattgtccatatacatttggcgcaagtggtatttgaatcccttttcttaggctAAAGAAATACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAATACAaaagcaacatgcaatacatgaattatatttaactgtacttcaatgtccacttaagaaaatagttaacaaaaatatcatgaaataataa
atcaaaccttattaaattttaggttcactttgtcgtgggtttctttgggattgtaaatgttagtaaatatttttttttctggatgaaaataacaatcagt
ctacaagatatcatagagttccctccttattctttaaacaatttctttgtgaatatacattagattggcttttactattatagtcattgtatcaaagatg
accccattctgaattcttacatgaaatgatgttttaatttgacaactaattacagttttcttcacatctcatgatctcagaaaatcaagagacccagtct
g UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 502 190 NA intergenic
0 chr7 140842695 140842958 1000177 0 + Ya5ACA1667; RIP_Alu_chr7_140_01 TGTCAGTGGCCTGTGAGAAC TCCTCTGTCATGTCTTCTTTTCC SINE Alu Ya5 cttggggattcggccattctctgcagtgcccagcacttccttggacctgtgggccccagagctctctcaaaaagagctcctaagctctggggccagatgg
agcaagctaagcacatgctcctatgaagacctggcccccagtgtcagtcactggagatgtggcctcttgaaattttccccttatagttgggacacagtgt
cttttcatttttcccagggatttctcctggggcaagatggaggaggccagctcttgaacttttccccttgctgtcagtggcctgtgagaacctggtatgt
gatccatataaggatctttctccttggcatgtctttctttcagctttctttcctttgctttcttcaggagagattaaaagaagcttAAAACCTCTGTAGA
TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC
CAGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCC
CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACCTCTGTAGAagggaaaagaagacatgacaga
ggaatcattttaaaatcactatgtttctccaaaatatggaattactgcaaaaaaaatggtctaaaatcaaaagaatcctagtttttcacttctggaagtc
aatgttgagtctctgtgtttgacctatatatttccccattgtattcaatgtactgatacataaagaaagcatctcagtatgggggtaaggtggtagtggt
tcagactcccacagagatttggtgaagacagggagaagatctttcacatacaggctgaaaacaagttcaaaaatcaggtagaggctacgagattgctgtg
gtcagtgtggggctgcaggcttgagcctgaggctgctcaaccagttttgctcttgaagtccctg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 432 154 NA intergenic
0 chr7 39836572 39836869 1000178 0 - Ya5ACA1696; RIP_Alu_chr7_039_01 TGCAGGTCCATACCTGAGTG CATAGGTTGGGAGAGGTGGA SINE Alu Ya5 ttttacaaattcaattattcatatttctttaaaatgcttttttgtaaccaactttccattacaaacataaaacaatgacaggttgaccactgctaaattt
taagagtaaattatatagaaaactagattcataatgagaaaattaatttcacatgtgagcactttaccttgatatcacaatcacggtcttccttagctga
tgtaggctgtaaatcattgatcgcctgtttgccggaaagcctttagagcaaaaatatacaacaaaaatgagtgtgttcatttctttaagaaagtaatttg
caggtccatacctgagtgtcacctccaaaaaaacagaaatagaaacaaatctggtgagagactagctatctgtatattaatgttgcttAAGAAAATTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA
GAAAATTAAAatttggcctctgttgtagattttagttacttatttctatttccacctctcccaacctatgaaatagtcaagacccacgcatagttccgta
acaaatcatggcagccaatacactggcatagtctgagaataatttgtcttcacaaattgtatgtcctacaggctgagctgaaaatccaattaattgctga
cataatttttaatacctgaactggaacaaacctgataatctaaaacaaggtagaaaaatatagagtctcctcttcttcatttatttctggttcaaagact
aatctctgtcactcaaaaatggcagcctgggttcttcagcacggaaatcacttaagaaggcctcagtgcgggccaggtgcggtggctcacgcctgtaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 472 162 NA intergenic
0 chr7 42614186 42614187 1000179 0 - Ya5ACA1702; pAlu7-42354424;1104685592768; RIP_Alu_chr7_042_01 TCCCCCATCTCTTTTTCCTT;NA TGGATAAAGCTGCAACACCA;NA SINE Alu Ya5 tactttatctgtctcatgacttttaaaacgtgagctgttgattttcctacgtaacttgtgtgtgtgtggaaatctccttagatttacacaaaggtgaata
cttctaaagacaattatgactttcctctgccagttgacaactcgtctaggattatttaaactaaattccattctcagttttttgggccatccaaatacta
tggaattgaggcagcaaacaaacacgagatctaacctataaatacagtttctcagagtctattttcccctttcactcagtgccaggatttgaaaacttgc
aattctcccccatctctttttcctttttcccattttcttgtaggaggatggggagagtttatttctagttcatacttatgcttAAGATAAAGACTTTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAGACTTTTGGtgttgcagctttatccagggaggtctcctgttagacactgtcacttaaagggagctgt
gctttattttctgacctctacaccttacaggctcataacagcttaaattgttaagttctgaaaatattctcaaggtaaaaatactgaacgaaattctatg
tttgcctctctatgttctcatcttcccttagattttggcctgagcaaacattactttcttgctagctcaccaaatcaatcattcagcaaatatttgtgaa
gcccctacaatcttccaactactattctatgtgttgggaacacagcagtgtaaaaaacagacaataatccctactctcaaggaatttatctcagaacggt
tgagtggtggttttcataatatttt Other;Venter - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 55;NA 454;NA 112;NA NA;NA intergenic
0 chr8 64307429 64307669 1000180 0 - Ya5ACA1770; RIP_Alu_chr8_064_01 CCCCAAGTAGCCTGTCAAAA CAGGCAGCATCACTACCTGA SINE Alu Ya5 gtattgaaactctaaaagtaatcacgaatctgtctatttatttttccagttgtgacaattattgctttgtttaatttcaggtctctgtcaatgttttcat
aaattgacattttcatcattaagaaatttctttctttctttctgttattattccctgtcctgagtctaatttgactggttttttacagccactccagcta
tccctacacttcatgttttcatgctacatttttccattctttttttaacctatctgtgtctttacataatagaaactaaccctagaataaatactactct
aatctgccctaatatatcttaatagcaagcctcaaaaaaaatcaagctaatccccaagtagcctgtcaaaataaaattcaaatattttttAAAGGAAGAC
GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAGAAAGGAAGACaacaaccaggaagtcaagcacttaaatgccaactaaaaattaccagac
atgctaagcatcaagaaatgtgatctctaattaggagaaaagtcagtcaacaaaaatagacccaggaaatgatggtaataataaaattaatgtataagga
caaattcaggtagtgatgctgcctgtataggctgtgctagcctgatcagccacattgttttatttagtcttatctcagtatggactcttcccaaaagtat
tcacatggattatataaatgccccatctggctgtagcaacgcctttccagagcccacagcctcacagagatgtgtctttaacacaccagtcagtcatccc
ccaggtattcaaccaaatagttatgctgttagtcacagccca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 473 222 NA intergenic
0 chr8 87965214 87965529 1000181 0 + Ya5ACA1793; RIP_Alu_chr8_087_01 TTTTTCCAAAAATGCTGGGT GTTCATTGACTGGGTGGGTT SINE Alu Ya5 agctgagaagagaagacaagggtaatgagaatggattcttggccaacgtcaatgcttaacggaagaagatagcattcaatggagcagtctaataatggga
aagcaagaaaggagagaatggtgtcacaaaaacccagtaagaagaaacttcagtatcaaacatcacacagggcgtagtaagatgaagactgaaaggaggt
tatttgactagaatctaaaaggtctctgatgatcttaatgaaaaaaatttcaaaaaatatgaagaagattaattatagtagatggaagagtaaatttggg
ttggggaaatagaaaagataaacgtagattattttttccaaaaatgctgggtataaagagaagttattttgataatttgttgtaaaacaTTGCCCCTTTC
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAACAAAACAAAACAAA
ACAAAACAAAAAAACCTTGCCCCTTTCcgtttcatgtgtccccaccactcccccactgcccccattttctcttctcaggtaatacagttctattttaaca
tcttaacccacccagtcaatgaacagggacaatctaggcccacttgggaattgtctctgtcagtgtgccagcatttattaatagaaaactttgactgggc
attattcttttgcctctgaaggtttatttagtcaccctttttgggtgccttatgtctatctaatattatattatttaaagaaaaattacctttgagattt
tagaaaacaaaaactagttgaaaaatgggtagatacactatgaaccattaacataggtatgtttagtgacctcactagataggtttagacttattttaaa
acatactcctccctgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 492 165 NA intron:CNBD1:NM:173538:1/11
0 chr8 99426012 99426321 1000182 0 + Ya5ACA1805; RIP_Alu_chr8_099_01 AAAAGGCAATACATGGCTGG TGATGGGATTAGCACCACAA SINE Alu Ya5 gcaaactatcatctgacaagtccttaggaaggtactgttttcatctgaagataaattttacctaaattctaccatgtttttcaatgctgcagtcctcctc
acctggaatccttccatccttggctccctgtatctgcaatgcaaaagaaatacaaacatttacctatagcaaaactctgagaatctccacaaagtcaggc
tgccaggaaagcctaagagcctgggaaggagaaggaggggacaatacattctgcatggtttaggcatccttgctgcccagtgccttttaatccccttggc
aaatggcctgggtttattttttagagtgggttgggcaaactcagatggaaaaggcaatacatggctggagcacaggagccatgagtAGAAAATATGGGAC
CCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAATATGGGACtctccaaattctcaccttgtggtgctaatcccatcacctatagtaatgttgcaaggcaggtgaaagcttgaattct
atctccaaggttataaaggaggtataaaataaaacatctatcaaatattttgagacccttagaagcacagaatgttatagctgaaaatcctaggtgtctc
tgagaatgtggaaataggccattttagcttaaaacaaaacaaaagattgcaatctactgagcctgaagtggtttgagatctatgtatgcttaatctagca
atgtatgtcccaaatactgcaggtcctcttgactttaatcatggaaagatgatcccatattcattgagaagaaataaataaagcagcctctttaacctgc
ctttcccaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 412 88 NA intergenic
0 chr8 97657824 97658122 1000183 0 - Ya5ACA1806; RIP_Alu_chr8_097_01 TCAATGGTACAACCAAACAACA CCCTACTGCCTTCCAACTTTT SINE Alu Ya5 gttccatcaagcaagaaagcaagatgccagcaacagatatggaaagttcagtcttctctaggaaaatagctcatttgtgtacaagtattaaataatgagt
tgcaccaccgttccatccacctagccagcacaatcactgggatttctctgatgtattaataaactgcagaggattaaaagtctactacatctcaatacat
tcttgggacaactgagaaatgtaaatatgggttgaatattagaaatgtattcaccattaactttcttaggtgagattgtgttttctcctttttcccaggg
gataaatgctgaatcctcaggggtcaagtatcctgatcactgaaatttactgtcaatggtacaaccaaacaacaaaaaaaagctgtatatAAAGAGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAGAATAataaagcaaatctggtaaaaaaaaacaaaacaaaacaaaaacaaactaccaattattgaacttatgtggagaatattgtcctatgctttca
agttctctgtgtatctgcaaattcataatttaaaagttggaaggcagtagggtaactccagctgaaaaaacttcaggtgacaccagagctggtattaatc
actaatgggaccagaaagtaccgccttcataccaggtacaagaatgaggtgaaatctgctaaaaattatactagcctgtagttagctgacttaaataaat
tgggcccacaaaagactgcatgatgtatttgtgtgtggggatcggggagggtggtaaccacataatattctaggagaaaagacagctatgaacttgaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 500 191 NA intron:SDC2:NM:002998:1/5
0 chr1 70540716 70541022 1000184 0 + Ya5ACA589; RIP_Alu_chr1_070_01 CATTGCTTGAGCATGTGTCC TGAAGCTTGGAGCCCAAATA SINE Alu Ya5 tcacagacaaggcaaagtgagttggtattcttggtttccctagacaggaaaaacagaaataaaacatgcctcacatgctgcatgaaaataataactaggg
ttacatagaatttatcatcaaaattaataaatctaagaatgaaagtgacactactgacaattctgccaggaaaacaggggtgagccagagcaaagaggga
agtatggttgccttatgtatcaagaagccctaaaaaagtaactcatcaactcacacaggggcggcgggggggcggggggctgcctgttgctttatagctg
aattctagcttttagtccactcccagaagctagaattcagctttactattaaataacacctatcattgcttgagcatgtgtcctAAAAGAAAATAGTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAATAGTATTaaaagggactcttcccctatctctataagatgtgggctcctgataataccaaaaaggaacagatcattttatatgta
agtgcactatttgggctccaagcttcagctatcagggaatgttatgctctacataaaagaagaaatgggctaaaacagtcttctgcctccattccctgct
tgcccatcataggtgaaagtggtagtgggttgccaggagtggagatgaaaaggtgagtaaagagatgcacagaaagacagataaagaaagacaaagacag
actgacatggtgacctttgagattttagatctagcgatatgtaaaattagttatagaaacttcccagttatataaattaatacagcctatttttatttca
ttcgtgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 464 141 NA intron:ANKRD13C:NM:030816:6/13
0 chr1 223411037 223411339 1000185 0 - Ya5ACA637; RIP_Alu_chr1_221_01 AAATGCCCCCTACAAAGACA TGTGTGTCCCTGCATCTCTC SINE Alu Ya5 aactaaaatttaagcgtaagatagctaatgtaaccttgttgtacccattatgattgtcttcatcataccacttttttggaattagttgagacccactttg
tggcccaatattgtgttaaggactataaatcttttaagtgtatacttggagagatgttaattctctagatgttgccaagaaaatctttcctaccacaagg
gtcctaggacttcagctgttggataattagtttgttttctaaacaaaaagatttggaaaattattttaaaggaaagagggagaaaactgcctttttccct
taaaagaaaaaaaatgccccctacaaagacatattcactttttaatccccagaatctgaatattatttaatatggcaaaagaggtgattAAGAATTTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAATTTTAAgaggagtttatcctagagtatccagatgtaaataaaatcacatgtatcctaataagagacagagagatgcagggacacacagagga
gtaggtgatgtgacagtgtgtctacctttgagtcattgtgtccaagtgactgccatacactgattgactagagctgaggttatgttactttagtgactat
ttgaaaatgttacatttcctgtaatttgacggaacaataacagattagagtgctgtggtcgtaagccaggaaatgcaggcaaccaccagaagctggagga
ggcaagaaatggaatctgcccaagagtctctggagagtaagcaaccctgcccacaacctggatgtcagacttctggccgcaggtcctgtgaggaaataca
ttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 484 170 NA intron:DNAH14:NM:001373:33/84
0 chr1 78316179 78316483 1000186 0 + Ya5ACA645; RIP_Alu_chr1_078_01 TGAGCAGGAACTTTGCATTC CAGATCAGTTCTTCACGGGAG SINE Alu Ya5 taaggatttcattgtacaatgaaaaacatcattaagattatatctactgaatcagtcattttccttacgttgtgtgataccttgttacgagtttactttc
caaatcttttttgatttagtttagtttgtccgtcagagagtgttatattttaaaaaaaagttaaatgctgcctttcactgcctgttgtgtagcgtactta
gattctggaagcaaatatttcttagaggagcattgataatatggccacttcactgttagttttattgttttcatatgagtatgagtgagggtatgaaagc
tcacagtagcttcttaaggttccttctgacttaaatgttcattatcttttgatgagtgaatgagcaggaactttgcattctttagaaaCTAGTGTATCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAACCTAGTGTATCACtttcttattttgcagttcaaaatataaaatctttgaggatgcttgaatttctagacctttatcatatacttagaggtatattt
gctgatagttgtgcattgatactgtgatagcttcttattctcccgtgaagaactgatctgaagtcatggagctttagttacctgctgctcttattccacc
ttgcagtggctatcacattcctacaggttttcaacacagcttcccatgaagttccattcactgaaagatatagctggctccattccttacagaaaaaaga
aactaatgccctgcttgccaacttttggctgtctagaatggaatgttattctgcacgggaggaagcacgatggaaaagggttcttctacctgcaggaaat
ctaat UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 500 183 NA intron:GIPC2:NM:017655:1/6
0 chr1 156978671 156978977 1000187 0 + pAlu1-155489820; Ya5ACA720; RIP_Alu_chr1_155_01 CCCAGAGGCATTGAACATCT TCTCTGTCACATTCCCACCA SINE Alu Ya5 agcttaacttacttttcaagcaaaagtaataacatttataaatcatacttatagtcttagaaaaacaagacctataaattaaaatgatagacacaaaact
tagtactgttgttattcatattaaaaatcattaaagagatacttcactttgaaaatacatgccaaaatgtctttaaataatttcgttaaaaaaagaaaaa
gtgcgtggtaattttaaaaaactgatttgttagcattttaaacttaaggagatgatgagatttctttgaagaggtgtgtgtgaactccattagctcccag
aggcattgaacatcttttgagaacagaggattttcttggtggcgtttttcatatctttgttcctcagactatagattactgggttGAAAAGTAGGGCAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGGAAAAGTAGGGCAAGgacagcaaacatcagtgcaatggccttgtccagtaatggtgggaatgtgacagagaagcgcagatacatgagtgacac
actgccaaaaaacagcaagaaaatagcaatgtgggctgcacatgtggagaaagccttctgacggctctcaccagagggaatcctcaggatcaccgtgatg
attcttaaatagaaaagggtgatgacagagacagaggtcagaatggaaatagcacggatcacatcttcaaccagaattatttacgtatctgtgcaggcca
actgcagcacaggttcaaagtcacaaaagagttgatgaatttggttggcgccacagaatggaagagtggaaatgcacacaatctctggcagtaacatgag
gaagcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 483 161 NA intergenic
0 chr1 167426661 167426973 1000188 0 - Ya5ACA733; pAlu1-165855970; RIP_Alu_chr1_165_01 CCTTGATTGCCAACACTGAA GAAATTGGAGATTTGGGGGT SINE Alu Ya5 cttatttgggacacctagctttgcggagcagatggttttcccagtaaactcttagattctataggtatcacatttcagggtcaagaattacgcatatcct
cagtataaactctgtaaagactttttttctcttgtttgatggaactcaaaaatggagcaataatagttatcaacaagcaatgagtctgagtcctcaggct
ttaatggcaaccaacaaacccatgctccttattgcagaggaagagtgcattgttgattcgctttatatccccaaatagaaaacacgttaagggtaatcct
gggaaattatgcttacttcaaaccttgattgccaacactgaagtgtctaaatagcacttcaccatttttctggttgttttcttaGAAACAGTTCACTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACAGTTCACTTGCttccttcctgtgataaatgccatatttattttagtatgagtcaacctacactttttttatattgcctctct
ccccagacccccaaatctccaatttctcacaagtgaatttaggcaaactaaagaagacatctctgttccgtgagtattaaaatcaaacatttttaaatgt
aagttataaaaataacactttcattgttttcttcctaattactaaagtagtccatgtttattacccctattccacctccaaaaaaaaaagaagaaaaatt
atggaaaagagtcaagacctaatagactaaaaattttaaaactattcttgtttgcctacttctcagaaataaacactgtaaaataaacattttgacctga
cctcaaaccattg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 500 175 NA intron:NME7:NM:013330:10/12
0 chr1 184033440 184033749 1000189 0 + Ya5ACA745; RIP_Alu_chr1_182_01 AAGGTTTTGTTCCTGTCATAATGTT TGGTCCTAGAAGAAATGCACAA SINE Alu Ya5 taaaagttgtctctttgttttttggttggttgtttttgagactgggtcttgctctgttgcccaggatatagtacagaggcacaaatctcagatcaatgta
acctcaaacctctaggcttaagcagtctttctgcctcagctttctgattagctgggacaggtgtgtgctaccatatctggctaattaaaaacaatttatt
tttgtagagatgcagtctcactatattgcccaggctggtcttgaactcctggcctcaagcagttctcctaccttggccttccaaagtgctgagattcaaa
gctaatattgatatgtaaggttttgttcctgtcataatgttaattgttacctagttgttttatagtctcatttatgcaattgctttatAAGACTTGTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGACTTGTTTTatacttttatgttctttttataatggtgggtattgacctttaatttcaatgtttagatttcttttgtgcatttcttct
aggaccagtctggtggtgatgagtttctttagcatttactcgtctgggaaagactttacttctccttcatttgtgaagcctagtttagcagaatgcaaca
ttcatggtggacagtttttttctttaagaattatggaaataagaccctaatctcttctacctcataaagtgtctgcttagaagtccagtgttagtctgat
agagtttcctttataggcaattagatgcttttctcttgctgactttaggctgatgattgtatgtcttgcttaagtacttctttcaatatattttcctgaa
gttctttgag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 491 169 NA intron:HMCN1:NM:031935:1/107
0 chr1 115598423 115598695 1000190 0 + Ya5ACA974; pAlu1-114896896; RIP_Alu_chr1_115_01 GCCCAGTCTAAGACGTTTTGTT TGCAGGCACCTCTTTCTTTT SINE Alu Ya5 tacatggactttcaaatacactgattgctatgacctaaatgttgttgttccctcaaaattcatatgttggaacttaatttctaatgtgatagtattaata
ggtaaggcttttaggtggtgattaagtgataaaggcagagccccatgaataggattaataccattatgaaagtgagggacactgtttgccctttctgcca
tgtaaggacacatagaagtcaccatctatgaggaacaggtccttcccagacaccagatctgctggcaccttgatcttgaacttcctccagaactgtgaac
aataaattctgttgtttataagttgcccagtctaagacgttttgttatagcagcaggaacagactaagacattatcatattctatgtttAAAAGAAAGAG
GTGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGG
CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC
ACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGgtgcctgcatgtgtac
ttatttaataaatacttttatatagtagacataaattacacatactatatattaatatatggtacaatgtattttatttgaagaatgaaagaacattcct
ctgaaaatgatatactgaaaggttcagaataaaactagcaaattattggggattttcagtgaaatgcaagaagacgtagtttgtataaaaaagtagcaga
aaattctaaggagacaacaggctgggatgaaaaatcagcaggctgagaaacgaaataaagagcatagaatcaatttggaggggctgagataattttttta
attatggaaaattaatatacaatagtggaatttaaatccatattggaaacaataagaagatgattttatagtt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 368 85 NA intergenic
0 chr1 76872964 76873237 1000191 0 - Ya5ACA975; RIP_Alu_chr1_076_01 CCAGAGGCAGACCAACATTT TAAAGCCAGAGGGAAAAGGC SINE Alu Ya5 caaagatgactctcattttgagatcatttccaaatatggatctcttatagagttggatagataactataagctgatttgttaaaagaaaaattatccaaa
tttgacattcaactgcaagagtgttgagatttgcagaaagaaaataagaggagagaggaaagtaaggaataaggaaggaagggaggaaagaaggaagact
tctttgttctatgcagcttatgtgctaacccaactttgttaatatgtctgacacagcaaaaaaagaaatatatgtcagcatcagatagttaatatggaca
aaacaaattccagaggcagaccaacattttctcttgttattgtttatagtagtattctggatatgtttccgacttggatatcaagtatattAAAAATCCC
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA
TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCataccgccttttccctc
tggctttattaacatatccttacttgtcctgttgtaaaacaaactgaaatatgccaatagctctttgccattttgtaagctttattctaagacacaatgc
ttataaataaagcactataatgccataaaaactctcaacaaacgtacaactgtgcatttacactttcttctaaaaatagatgaagattatgggttttaaa
atgaatgagaaactacagaaaaaaaatcatgggaactcaggaaaataagtgaagcaaaaaatgtaccatatgtaacagaaatgggtatttactcagtaac
agtgacaacaaagctaaacacaaggaaattagtactttgtagattaggtaacaaaaagctataaaattgcctcg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 399 116 NA intergenic
0 chr2 36809178 36809480 1000192 0 + Ya5NBC5; RIP_Alu_chr2_036_01 TAGGATATTACTGTACAAAGCCGTAGATTT GTTTTAAGCTAAGCGTTATTACAAAAGAGT SINE Alu Ya5 atgttggccacactcgtctcaaactcctgacctcaggcgatccacccacccctgcctcccaaagtgctgggattacaggcgtgagccaccacgtccagcc
tgtattttctatcctatatttttatcattattttagagtatactccttcacttacttaaaaaaaagttataacatttaaccaaaagattttaaaagtaaa
aaattttaaaatctcaaaaatagaaaaaagcttatggaataaggatataaggaaagacaatatttttgtacagctgtaaaatgtgtatgttttaagctaa
gcgttattacaaaagagtcaaacagttaaaaaattaaaaagtttataaggtgaaaaagatacagtaagctaagattaatattatattAAAGAAAAAATAT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
AAAAAAGAAAAAATATtttttataaatttagtgtagatgacgtatacagtggttataaaatctacggctttgtacagtaatatcctaggccttcacactc
actcacccctcactcactgactcacccagagcaacttccagtcccgcaagctccattcatgctaagtgtcctctaaaggtgtaccactttttatctttta
tactgtatttttactataccttttttatgtttagatatatttcgatacataaatatttatcagttgttaacaattgtttacagtattcagtacagtaaca
tgctgtacaggtttttgacctaagaggcaatagaccatatcatacagcctaggtttgtagtagaccatctaggtttgtgtaagtacactctacaatatcg
gca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 476 163 NA intron:VIT:NM:053276:2/16
0 chr2 95723451 95723761 1000193 0 - Ya5NBC324; RIP_Alu_chr2_095_01 TGTCTCAAGGGTCATCCTCA TCCCCATCCCTAACTCTTTCTT SINE Alu Ya5 gagtaaatgggttacctttccctggagccttctcaagccactatggcaggagatttccactcaaacccttcatattagaaggttcctgagacacccacat
ttcagttctgtggaaagtaccagggtcaaactactggaagacctaggaccccggtcacacaccccacctaccttacacttcctgcactgtcctgggccat
ctctccctcctgaggatctccacagatggctcaattccatagggtcttgttgatcttacatcaaccagtgtagaaacttctgtctctctctctccccatc
cctaactctttctttcacattttctcattcatactcaccttcctttaaaataattccatgggtcttttttcaaagttaaagagacttttAAGAATCTTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAGAATCTTAGtttgagtctgtgacaaaataggggaaatatcatccctgaggatgacccttgagacagttataaatgactataataaaa
taaaaaatttggaataagaagggattcccaactgctactctcctagctaggagtcgaaacaggcccttcacaaagggagcgacagggaggacggcagtga
ggggcagtgaggaaagtggggagttgaataagccttgccagattgggaaatgagacccacagggaaacacgactccaatccctcctcagccataaagcct
tgttcccacaacctccccagcagcacttcccacacacatgtgtaaacaacagaaagggctccagggagccaggctctgagcaggagtgggagagagagat
cagtctgaact UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 486 164 NA intergenic
0 chr2 213282932 213283222 1000194 0 + 238248; Ya5ACA796; pAlu2-213538608; RIP_Alu_chr2_213_01 TGTCAGTGGAGGTGTTGGAG CCTTTCCCATTTGCATCAGT SINE Alu Ya5 cttccataacatcctggcaatagtggcaggcagggagatgttcatattactgagcacggttttgacttgatattagaatatatatttatttgctcagctt
ttttttttctcatccctaataaagtttaaattaaattgaagattgttgagtttgaaaatacaggaaggagagactgtcatggattacccattgatagagg
aatgtccctgaaaggtgacagcaccagaagagttctttctcatgaataaaagaaaaggaaacatggtagttgagatgtaaatatgtctgtcagtggaggt
gttggagaaagggacgagaatcttataaaggaatcccagctgataacctctctcttcagtgaagtaggaaataagaatgtgtgtcAAAATAGCAAGGCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAGCA
AGGCCCagggcctcaaaagaatgaggaaggtcaataaggtctactgatgcaaatgggaaaggaagccgatttgagacattcaaacaggatttagagtgcc
accagatcaagtcttcatttagttaaccatttgataaatatattgagtccaacacagtatcaggcactatatttatttccagcatcacaaagacaaccag
gcatcaacttgttaaacatccccaggatttgaagtggaggagctgactgtgcaggatccacagtatccaaacatcccagctacctcactttctttcttct
agctctggtcagaaataaggctatggcaagtgacctttccttgctcagggcggcttcctatattttatgaaagttccatgccagggatttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 475 184 NA intergenic
0 chr2 115388897 115389198 1000195 0 + Ya5ACA815; RIP_Alu_chr2_115_01 TGACACCCATAGGCTCCAA GCAACCTCTGCTCTTTTTGTTT SINE Alu Ya5 gccaaactaagcttcataagcaaaggagaaataaaattctttttgaataagcacatgcttacggaatttattaccaccacctgcccttacaagaagccct
taagggagtgctatacatggaaatgaaagaccattacttgtcaccacaaaaagaagtatacagcccactagactataaagctactgtacaataaagtcta
cacaacaaccagctagcaacagaaagacaggatcaaatcctcacatatcaacattaaccttaaacccaaatgggctaactgctccacttaaagggcaaag
agtggcaaacaggataataaaacaagacccaactgtatgctatcttcaagagacccatctcccatgcaatgacacccataggctccaaatAAAGAAATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTGCACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAATAAAAAAT
AAAAAGAAATGGagaaatatctatcaagaaaatggaaaacaaaaagagcagaggttgctattcttatttcagacaaaacagactttaagccaaaaatgat
caaaaaagacaaagaagagcattacataatgataaagggtttaatttgacaagaagttttaactattctaaatatttgggtacccagctctggagtactc
agatttataaaacaagttcttgaagacttagttaactacactgtaacagtaggagacttcaacactccactgacagtgttagatatcatcaggcataaaa
tgaataaagacatttaagacctcaatgcaacacttcacaacatggaactaacagacatctacagaacaatccatccaacagtaacataatatacattctc
at UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 389 78 NA intron:DPP10:NM:020868:1/26
0 chr2 240607628 240607934 1000196 0 + Ya5ACA825; 238271; RIP_Alu_chr2_240_01 GAAGACAGGGTTGAAGAATGC AGGAGCTGATGTCGTAGCGT SINE Alu Ya5 gaggcctcccctaatcttcctacccagcctctccccacagcctccttcctcagagcagccaccactcacttggggcaagacattcctgtttccacatcga
gtcttcatccctctactaaaacacaggcttccctccctgtggcgcccttagctcccagaatgggtctggcacacagcagacatgcactaaatatttaatg
aatacgttaacccagttccaatttgccccaagaatactgagatgggagcaagctgcactttttttttctaaatgggaaataggttactatagcaccaaaa
aaagcaaggctttatttaacaagtaaaatgtttctttttcattttaagaaatgagtagtcagaagacagggttgaagaatgctttAAAAAGAACGTGGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAACGTGGAGtaagcctggatgtcagtgtgaagtccacgctacgacatcagctcctggattggctcctggtaaagaacctcaaaccag
aaacagcagaccacattgttttcttaggagtaacactaaccaagatcagggtttacgttcatataagaaaaaaagaagcactaataaaatgttttcaact
ttttcaaagcaagacaataactccaccaccgtacaactgtgtagatacgtgtcatggacacacactgcatccgtggagacctgaaggagcataggcagcg
gctcctagctcagctctgagaagaagcctgtgagccggccactcccagtgaaaaccacattcttgttctcacggctcagaccccatgaagccaaccctag
tggcggc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 407 85 NA intron:NDUFA10:NM:004544:3/10
0 chr2 77830293 77830599 1000197 0 + Ya5ACA839; RIP_Alu_chr2_077_01 TGCGTATGATACACCCTCACT CTCACACATCATATGGGCAAA SINE Alu Ya5 agggatagcgttaggagaaatacctaatgtaaacgatgagttaatgggtgcagcataccaacatggcacatgcatacctacataacaaatctgcatgttg
tgcacatgtaccctagaacttaaagtgtaataataataataataataaaattacagtggttatctttatgtggcaggattatagatgagccttatattct
taattttctgcattattcatattttcggtgaagaacatgtattattttcataatcagtaaaataataaaggttattaaaaaacagtaaaaaaaggtatta
atgcgtatgatacaccctcactatggagtacaatgaggttagaaggaacaaatttgaaaagtcacagcagatctgattcaaatAAGAGTCCAAAATTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGTCCAAAATTCCTtccttctttttatttaacaagagtgaacaacagaagtatctttttcaaatatcatttgcccatatatgtgtgagtc
tgtttctggaatgttcattctgttctactgatctattttacagaactcgacatgctaccacactgccttgtttaccgtgactttataataactattgaca
tcacacagtgtgagctctccaactttgttctatgttttcaaagttgtttttgttattctaggtccactgtatttctatatggattttagaattcatcaat
taaaaaaatgtatctgctaaaatttttatttggattacattgaacttacagaaaactttggagaaggaacaacttaatattggatcttcttacccatgaa
cataata UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 498 174 NA intergenic
0 chr2 87180173 87180493 1000198 0 + Ya5ACA855; RIP_Alu_chr2_087_01 CCATGAGTGTGGGTTCTGTCT AACCTCTATGCACTGAAAGAAAA SINE Alu Ya5 tataacatgaattaatatttgcctcaatttacagcaaaatgaagaccttctaaaattgtaactccatttatttttcccttccaacttccatgctattttt
ataatacattttagtatatgctatgactcccaaaaacattgttattgctattattatgctacattgtaaatattcatttaaatttacccactggaataca
actttgtgtttcttattacttcctgaatctataaactaccacttaataccatttcatttttgtttcaaaggtaaccatgagtgtgggttctgtcttagtg
aattacttcagttttcagtgatctaaaaaggtttttgtattatcttcacttgtgaagttttaactgtatatgggattgaagattAGAAATTATTTTCTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGAAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAATTATTTTCTTTcagtgcatagaggttataattctattgtcttttcacttacattgtttcatttagcaagttaag
agtctaaaggtgttcttttaaaggaaacgtgtttttcccctgactgtccatgatatttttctcttttactctatgtttctgcaattcctctctgtgtcat
caggttttgaattgctttctgtgtttttctgctttggattcatgtttccctttcaattaatagtttaattcatttagaagcatatcttccttgttcttgc
tctactttcttgagcccgtaattatatgtaagacttttcattaacctttgcactctacaatattttctatccttttctttactatgtttgattctacata
ttttattctaacatacctgct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 478 141 NA intergenic
0 chr2 99119413 99119732 1000199 0 + Ya5ACA862; 1175; pAlu2-99357450; RIP_Alu_chr2_099_01 TCAGAGTAATGCACACAGATGCT TGCATTAAGTGCTCCAGAAGG SINE Alu Ya5 tatattatttactattattactaattcctctcactgagtcaacttatttaattggctatcaagtcctactgctcttttcactaaaaattatctcagttac
atttcttccatccctactatcactgttttagttcatgctttcagactgtagcagtcacatgtattcactttatatgtaaacttataaatagctagaataa
gaatgaaccagaaatatgtttctggggataaaaagatgtaaaacaaatagaatcttacaatttcaaccctaaatgaatctaggaaagtccagaacaaata
aatcagaaattacaccacagcatgattactgctacatcagagtaatgcacacagatgctaaggtaacactgagaaagaagctacAAAAAAAGTATTTCTG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGTATTTCTGacttctacttcttcaaaaaagacttaggatctactcttcattccaaaagaactatgaacatatc
ccttctggagcacttaatgcattatattacttttatgggatgtccacagccatggctactttaacgtgtctaaaacagacttcctttttttttttttttt
tgagacagtcgtgctctgtcacccaggctggagtgcagtggtatgatctcggctcactggaacctccacctcccaggttcaagcaattccctgcctcagc
ctcccaagtagctgggattacaggcacctgccaccatgcccagctaactttgtatttttagtagagatggggtttcaccatcttggccaggctggtgtta
aactcctgacctcatgatcc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 485 149 NA intron:TSGA10:NM:182911:1/20
0 chr2 35944027 35944331 1000200 0 + Ya5ACA866; RIP_Alu_chr2_036_02 GAAAACCACACCAAATTGCAT CCGCTCTGTAGAAAATGCGT SINE Alu Ya5 ttctagaaataaaatgtttaatacctgaaatgaacctatcactagaaggaattaacagcagctctgacactgcagaaagaaaggttgtgaaattgaagat
acccaaagagagcactgagaaaaagaaaagaaagacttttaaaaagaggaatctcagggacttgtgagttaacagtaagccacataacaaacatataatt
ggaataccagaaaaaaaggaaagaaaaatatgtttagaaatttaaaattctacagttgtccaaaatttttcaaatttggtgaaaactataaaatcacaag
attcaagaaaaatcaaagaacagcagagaacatgaacagaaagaaaaccacaccaaattgcattataaccaaattactgaaaactAGAAATAAAGAGAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAATAAAGAGAAAaatcttaaaggcatatggagaaacaaagacgcattttctacagagcggaaaaaaatgaccacagacacatcaaaaactca
gtgagccagagtcagtgaaatggaatctttaaaatgatgaaataaaaaacaactgccaactagaatacagtcagtagaaatatcttacaaaaattaagcg
atgaagacatttcaaacaaacaaatcagaaagaatgttttgccagcaagtgtgcactaaaataaatgttgaaggaagtgctgcagatacaataaaaatga
taccagttggaaaagagataaccaaaaaaagcaccaaaaattataaatataaaagcatctttattttattttttaaaagtatttaaaaataattggtcat
ttaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 426 106 NA intergenic
0 chr2 150335232 150335540 1000201 0 - Ya5ACA903; RIP_Alu_chr2_150_01 GGAGTGTGTTCTGAGTGAAAG TAATGCCACATTCATCTGTG SINE Alu Ya5 taaacttcgatctgggatcatatttctcctaccagaaatagaagctttaatatttcctttagttctttaatgtttcctttttatatggcattgataaatt
ctcttactcttgtttgactgaaatatatatatttcacccttatccataaaaacattttgtatatgcataaacgtctaagatgtcatgaattttttttcag
caatgtaaagatgctccattatattttggcttccataggttctggtaaggagtgtgttctgagtgaaagtcttttgacagtaatctcttttctttttcct
ggtttcttgaagttatattatgatgtacctagatgtagctttcttgccatttttactccttatatagtgtttctctgtttgaatcctcAAGAAGCAGACA
CTGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAGCAGACAttgtggcacagatgaatgtggcattactttatttgagaagtgcaaacccagggtagtataggtatggaaaacgggaaat
gagacaagaaaatatgcaaggaatgtcataaaatgtgttaccatgctgactattacatcaagctgccaagaaacgtggtagctgctcagtagctgagttt
actttccggcatacataacttcttaataaggggtgcaagaaggaaccacacctaggaatattccatggaagaaagaacagagctaactctccaaaactgg
gtaactgtgttaccttatcccttgatggccattcaggaaaccagacaatgcctgggaatataatctatccagcttgaaactaaggattcgtgtctgttat
taatttaga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 499 178 NA intergenic
0 chr2 73978999 73979000 1000202 0 + Ya5ACA917; Ya5-MLS48; RIP_Alu_chr2_074_01 TGGCCTGTTTTCACACCTTT CCAAAGCAACTTGCACCTTT SINE Alu Ya5 ttttgagggggacaaacattcaaaccatagcaccgcctgtgtgttaaacacccacttaggtgctggggctgtaaaaagtaaatctaggcgtggccctggc
acaggagggactccatttcatagagagaaaagaacacagacccttttgttttagggtgcttgctgccaaccgctctggagagacaggctgaagcaaaaac
accaaacatggagaagttatgacagttccccaaagtagtgacgaaggcacatctcaggcttgggaagtgtcctcggtgggtgccaggcctgcctttccca
gcctcttctcggtgaagagatctctggctaagttctttaccttctctgagatttggaacatactgctgtttcacctaccaaagcaacttGCACCTTTTCT
NNNNNNNNNNGCACCTTTTCTattgtattaaatatttcagtttctccattgtatggaggcttccagcaattagtttacaagccaacttatttactattca
gtaactttttttgatattgagattgttcctaattttgatcattttaaacaaaggtgtgaaaacaggccaaatcttttcattcactcatgaccatttcaca
aagatagattcgtagaataagtattttcaaattccctttcagaaaagtagtacaatttaacactcacaagcagtgaatgtgaagccaattctccatacct
ttgccagcaagggtggccccaagaaccacacacagtaccccagctaaaggcaaaggtagcttttatcctggccatagcacactgctgatggtcaacaaga
caccaagtcc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR NA 60 500 171 NA intron:ACTG2:NM:001615:1/9
0 chr2 174798887 174799191 1000203 0 + Ya5ACA928; RIP_Alu_chr2_174_01 TTTCATCTTTCTAGGCTTCACG TCCTAGCCATAAATCACAAATCA SINE Alu Ya5 cactccagcctgggcaacaatggcgaaactccctctcaaaaaaaaaagctttctgaggcctcgccagaagccaaacagatgctggtgctgtgtttatatg
gcctgcagaaccatgagccaaataaacctattttctttataaattacccagcctcaggtaaccctttacagcaatacaaaatggactaatgcagaagtac
agtaagtagcatgcatttgggtagaatggcctaaatttgaagtgagaagctttgagttctatttctggttgacataactataagtgtgaccatgaacaaa
ttatttcatctttctaggcttcacgtttctttttatgaggaaactagacaggaagatattcagctctgagattctattttctattGAAAATGAGCTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAGAAAATGAGCTTCTCaattctgatttgtgatttatggctaggataaggtttaaactattaatacaatatctcaaaaaattaaaacttgagattta
attcagggatttctgatgtattacactaatgatctcatgactacttgaacaaaatacttctagaataaaatactactttagaactctcgagactaaaatg
atgttaaaaatatttttaatcgctatactgtaatgaacacagactaccaaaaacatttattaatgttctttttttttttggcaggaatttcttttgttct
ttttttgagacagttttgctcttgttgcccaggctggagtgtaatggcgccatcttggctcactgcaacctctgcctgccaagttcaagcgattctcctg
cctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 445 125 NA intron:OLA1:NM:001011708:2/10
0 chr2 196444673 196444935 1000204 0 + 8629; Ya5ACA953; RIP_Alu_chr2_196_01 GCTTTGCAATTCTTTTGGCA TCACTTTGAACCAGTTTCCCTT SINE Alu Ya5 catattaaaattaaaataagggtcttgctctatcacccaggctgaagcgcagtggtgccatcatagctcactgcatcctcaaactcctaacttcaagcaa
ttctcccgcctcagcctcctgaagtgctgggattacaggcatgagcctcctctaccacttcttataagaaaatgctcatccacatacctattcccaagag
agcttaaatacatttttatatagtttctatgctctcaagaatttgctttgcaattcttttggcatctagtaatactatacaaataagtaatgtaaaaaaa
aaaaaccacattcacttcttataaaaacatctccttaaaaagtgttccatttcaaatttatttgaagtcaaactaacaaggattAAACTACTTAAGGGAA
GGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGC
GCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC
CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTACTTAAGGGAAactggttcaaagtgacaccta
ctttgaaatattctataaatcaacagaaattcctaaatctgcatatgggagataaagcattttaaacatcataaaatatctcagtgttaaatatttttaa
aatttttctgaacactggccttcaaaatgccaaataactgaatatatttcagcaatataaattgaagaatattctttttacccagttgttggcatggcaa
atctttgtttctcacataatcccatttcaataacaggaaaatttacctcatgaacccaaagacgtttaatcacttctgtggtttctgttgtttctggtct
tgacaaacaaacaccttgaatgacacgggagaaatcacggaggttgaacaagtagtgagattt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 450 171 NA intron:DNAH7:NM:018897:40/65
0 chr3 191773343 191773631 1000205 0 - Ya5NBC51; Ya5NBC345; RIP_Alu_chr3_191_01 ATATTCCAGAAGTTTCCTTACATCTAGTGC AAAGCTTTAAGTCTCCACCATCTCT SINE Alu Ya5 tagcatttcactaagaatactgcatgcagcgggagggagaaagtcctccaacacttccgattactaattactccattcacaatttccatgatttcaatca
acctccaagtaaagctacaccctcctcttagacttgaatatagattggttgggtttctactgtgcctcaagaaatacactgctactagcaaaaacatttc
acagctcagtgtcaattgcaaacagcagattgtttctgccttagaacgtataaacttgcaaaagggggtccagagtcttacacttttgcccgccatctct
tcttccttcattatcctgaggggcatgcaaagctttaagtctccaccatctctgctgtacactttttttcagaataaaagtatcctgattaaCAAAGCAT
TCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC
TACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAACAAAGCATtaa
ccctggacatgctgaccactctcatggctgtaggggcactagatgtaaggaaacttctggaatatttaaggtttctattttctctcaccattttaatata
ctcggaaggagggaaagagtaagaatgtaaaataaacaaacaaaaaaacctagaaaacattaactgttcaaaaaggaaaccattcaatgcaaagctcagg
aaaaaaaggggggagtatttaaatgtggtattaaaaatggtttagcttctttggtaatctgaaaaaagtatatagccgggtttacatcagatccaggaaa
cccgtgtaggaatattttatctctatttttctctttgcattttatgcctctctctctctttttcctactatctctctttttcaaaaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 60 437 140 NA intron:IL1RAP:NM:134470:3/9
0 chr3 17706705 17707011 1000206 0 - Ya5ACA1002; RIP_Alu_chr3_017_02 GGGGTTGGAGAACCCTGTTA AAGGAGTAGATTGTGATGGCCT SINE Alu Ya5 ctagctttacgtactgctggaaagcagtgtccctgtctatctacaatttagtcttataaagcagcagtcccccctttttggcaccagggaccagttttgt
ggaagacagtttttccatggatgggggtggagatatggttttcggatgaaactgttccaccttagatcaccaggcattagattctcataaggagcacgca
acctagatcgctcacatgtacagttcacaaaagggttagcagtcttatgagaatctaatgccactgctgttctgacaggaggcagagctcaggtggtaat
gtgagcaatggggagcagctgtaaatacagatgaagctttgcttgcttgtctgtggccccaggggttggagaaccctgttatAAAATATGGCTATTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATATGGCTATTTTTAtgcttcagttctcttatattcttattataatggttatttttccatatttctttggtttgtcattcttgtataggc
catcacaatctactccttgttatgttttctagtcttgtttcccactgtttttttgttggccatgttatgacttattaaagcatcatgtattatagcaaca
attcttttattcatatccttttatactgattaaatgctatctcttctttttcgctcatactggtccttctagcactgttgacgttttgggctgaataact
gattttttgggggggaggggtcctatcctgtttgttgtatgtttaggtatgtttagggatgataggtttaggtatgttcagctgcatccctggccactac
tcaccag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 457 132 NA intron:TBC1D5:NM:001134381:1/24
0 chr3 72462417 72462696 1000207 0 + 899; Ya5ACA1020; RIP_Alu_chr3_072_01 AATCGCCTTCACTTTTCTG CAGCAAGGAAAGAGGTAGAA SINE Alu Ya5 agcagtcaaacaggaccccacacttagaaggaccctatgcttagttaatgctcagctgtcaccgacttgaaattctcaatgattttttaacaggggtccc
tgcattctcactttgcactgggccctgcaaatgatgccgcttgtgctgctggagaaccctcctgccctctttgcaagttcctctgatctgcacgctcaac
tagtttctcaatttttcttcctcctgttcagaatcaaggggcactttctttgtattgtgttcacagctgagattcaggttctgaagtcacccaggcttgg
gttccaatcccagctctgccgctttgtagctgtgcactcccaggaatcgccttcacttttctgagcctgcgtttccttgtctgtAAAAACGAAGACAGTA
CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT
GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAGACAGTAatag
tttctacctctttccttgctgcagggatgaaatatgattttttttctgtgtggcaatcactaaccccaggcccaggtacacagtagatactccactgggg
ctcagttgttactgcgcgtaaagaaagctaagatgtcaagtcagctgagtggaccccaatgtctagaccaatagcatgtgattcccaaggatccccaaaa
gctcagatcctccaagaacaaacccaagaaagccccaggtttcaagctgacgtagggagacagtctttaccttcactctatcatttatcaaatgtgtcca
tagctaatgtcacgttcacatgagccctgtgaaactggcattaaaactgccttcattttatagacgcagaagaacgaacc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 377 81 NA intergenic
0 chr3 81428773 81429070 1000208 0 + Ya5ACA1024; pAlu3-81151601; RIP_Alu_chr3_081_01 GGAAAGGAGCCAGAATAGCC CAAACATCTCTGGGGAGAGC SINE Alu Ya5 aacacttttatgtacacttctattgaagcacatattcttgccctgtgagtgagaaaaggttaacactttattaacttttgacttctttttttcccttcta
aatgtgactgtggaaattggtagtcatgtaggaaatgcaattccagtaccacttgcctagtgagcaaatacggtctgttctgctcccacatgtacacttc
tctaacactgattaccttatacataatcaagactagaaaataatggaagttcacatgcaggtttttctagggaaaggagccagaatagccagagtacaat
tgtaagtttcatcagaagaggaaaaactccttagttcagctgctatactgatagaagcactttcagctgtacttcacgagagtAAAAATGAGTACCTGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
GACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAATGAGTACCTGTGtgcagggctctccccagagatgtttgctgccagttttgcacagcctccagcttgtggcacgtttctcttgatcctgtgaccccta
aatgggagctccgctggctcagagcacaacttgctctgcatcatcccagtacccgcaagccaggatatacaacctattgttctggcaattttaaaaaaat
tatcctctgtggccatcaccaatcacactcatctgcctgctttgtcatttgtgttatatttccacatacaaattaatattttatttaaaactttagtaac
aaagttaaataggttttgaatccctgcccatttctatttccaataagccgtgttatttttagtgtgcagttttgaagaaaaaaagattatccaataac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 470 156 NA intergenic
0 chr3 105030613 105030921 1000209 0 - 18035; Ya5ACA1044; RIP_Alu_chr3_105_01 CCAAAACACAATAGAGGAGCTA TTCTACCACCCCAAAAATGT SINE Alu Ya5 taaattccctgagataaaattaaattcagcattctgttttctaggttatatattaagaatccttattataattcttctcacttaaatcctaacttattcc
aattttctgagccagataaatgtctcttgttcattctaccccatgttgcctatttctaggtcaattcttccttctaaatacagataatataccaaaacac
aatagaggagctatggttaaaatcgttcagtctgaagccaaatctctctgagtttgcatttttacagttccactcaatatgacctttaaaaaatacatct
ctctggggttttttggtaaaaaaaaagatgactgcatctaatatgtatgattaatgtgaggattaaatgaatattatatatatcgcatttAAGCATTCTC
TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGCATTCTCagttacatttttggggtggtagaaaagatattggaattgttgttttcttcccacttgccaaattttcttttctttttggaa
gatgtattaaagctttcaattaactttaattgacatatttatttaaaattcaacaaattagggtatactgtctaagtactgccaaacactaagtattcag
gatacagtagaaaataaatgaacagaagagtacttaaactttctgacttcttaaactttctattttaagaaaaatattggaagaaaatatacaaagttga
aaatatacagtatattagagagtgacaagtaatatagaaataaataaataagggaaaatacaggaacagtggtgcattggtcaagaaaagctgttttgtt
ttgttgcat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 552 233 NA intergenic
0 chr3 191438115 191438403 1000210 0 - pAlu3-191357341; Ya5ACA1048; 10422; RIP_Alu_chr3_191_02 ACCACGGTATGACCCACACT GCTGATGCTACTGTTGTCACCT SINE Alu Ya5 gttagaccacggtatgacccacactttgttttccgtgagttattaaagatgtcttgagggaagaatgaaagttctgcaacctgtagaggacccataatgc
cctaactcattcatttttaatatgtgtctaaataaacccggttaaggagatatatgaattacattactcacttcggggctttataaggttcttgcaaaaa
attaacaataatactataatttatcaactctaagacacattttttcacattttaatatctctaaaattagaattcatcttatagtgtcattttatattta
attagcaacttttttattttttagtgtacataaaagaatgatgtggttttggatcaatgtcatcttaaatttgattaaaaagcaaaatAAAAAACACAGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACACAG
Gtgacaacagtagcatcagcacttctaaccaaagtaggagatcttcatcaagcaccttatgataaggaaacatttatgattgctggagaccaaacatatg
ctcccttaaaatatgataataagaaactataataccccacttcaaagtatgcctgtttggcagaagcattattttgagatgattattttgagagactgag
gacacagaagaagctctgaaaacacgagtagatgtaacagaaatttatatctatgaagaaatctccatttgtaaaggtgtctccctctctacaagagaga
aaaagatgatctaactcaccgatatgcttatattaatagaggtggcaccaacttaaatgtaactttagatttaaatctgccttaattct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 715 413 NA intergenic
0 chr3 68972906 68973185 1000211 0 + Ya5ACA1050; RIP_Alu_chr3_068_01 AAGGCTTCCATCTTTCCTCT AAACCACAGGGACTTAATGC SINE Alu Ya5 tatatagaatatagccatggagaaggaataaagccctggtccctcccatatagaaaaagtacagttccacagctggtttagcagtaaactctcttcatgc
atggggaacacttagtgatttgtccttggtagcaccatgtctgccaaagaccacactgggcttactgcgcttgcccatggctagactaaccaaccactct
tgcttcagctactattattttctgtaatactgaactaaatggagtttctttctaaccctggacttaccctatctcacattctgtacctctgctaccaata
cgatagcactataatctgtgcaaaaatctaacatcattaaaaggcttccatctttcctctacaaggctaaatagaaggtgatattaaagAATAAAATCCA
TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAA
TACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCA
GTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAAAATAAAATCCAcacacattc
tccacaaaacttttaatttgcattaagtccctgtggtttcacaattggctggcactgttcttaccttctttcctgacaggacaaggccacctgacccaca
actaaatcacaatgcgtgactatcaccctacacaattcatacactgtcacctccagttgatttactagaggggtttaagaggaactttttttctgatttt
tttttaattatactttaagttctgggatgcatgtgcgatctgttacataggtttacacgtgccatggtggtttgctgcacccatgaacccatcatctata
ttagatatttctccaatactatccctcccctaccccccaaccccctgacaggcccttgtgtgtgatgttcccctccctgt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 399 108 NA intron:FAM19A4:NM:001005527:3/7
0 chr3 50038025 50038026 1000212 0 - Ya5ACA1071; RIP_Alu_chr3_050_01 CTGGGCAACATAGTGACA TCTGTCTGCCACCTAGAAAT SINE Alu Ya5 tgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttctatactta
atttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatatatacag
agcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcccaacac
tttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctcttaaaaaaaaaaaaaaTTAAA
NNNNNNNNNNTTAAAgttgtatatatataaaaggttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtat
atattaacaggaataagtgcatctacctattcgccaagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcaccc
aggctggagtgcagtggtgtgatctcagctcactgcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacag
gtgcccatcaccacacctggctaatttttgtatttttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcaggtgatctgc
ccacctcagt Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR precise insertion position unknown 60 366 75 NA intron:RBM6:NM:005777:6/21
0 chr9 106440810 106441109 1000213 0 + Ya5NBC61; RIP_Alu_chr9_104_01 TGAAATAATCCAGTTGGGGAAG GTATATCTCTACCGAGACTCAGTTTTTAGC SINE Alu Ya5 aggaaacatgacaccaccaaaggaaaacaatatttctccagtggctgaccgcaaaagaaatggaaatatataagctgcctaaaaagaaattcaaaacaat
tttcttaaggaaactcagtgagatcaagagaacacagaagacaagtcaatgaaatcaggaaaacagtttgtgatctacatgagaaattcaacaaaaatat
agatttaaaaaaaaaaagaaccaaacagaaatctagaagctgaataagtcaatgaataaaataaaaaacctaatttagagcttcaacagcagactagatg
aagctgaagaaataatttctgaacctgaagacaggtcttttgaaataatccagttggggaaggggagaaagaatgaaaaaacatgAAAAAAATCCTCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATCCTCCTTatgggactatggagcgccattaagcaaacaaatactgcattatgagaagaaattgagaaaggcacagaaaggttatttaacaaaat
aattgctaaaaactgagtctcggtagagatatacacattcagatctgtaatacatgtatgcaattcaataaatgtgatgcctcatatgaacagaatgaag
gacaaaaaactgtgattatgttaattgatgccaaaaatcatttgataaaattttacattccttaataacaaaatctctcaaaagagtcatatacaacaga
tgcacagctagtattatgtcgaatgaggacaactgaaagctttccctgtaaggtctgaaacaagataaagatgcccactttcaccaatttcatttaaca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 55 493 180 NA intergenic
0 chr4 181786435 181786736 1000214 0 - pAlu4-182133785; Ya5ACA1153; RIP_Alu_chr4_181_01 GGCAGGAGTTAGCCAGGTAG CCTGGGTTGTCCTTCTGTGT SINE Alu Ya5 atctccctgtacttcactgaatattctggaatgcctaaaagcaaccctaattattaattcatcaatttaatcatttaaaaatatatgtgtacctaagata
taccagatctcagtctaggaatataaagaataaaacagtccttacctgaaggtttttagattagagaaaaacagtgacacggaggaagtaattaaaatat
gttattagaactgccaccaaatggatatgcacaaggtatcgtggaggtacagtggataattacctaaaccatccttgggtatcagtgaaagcttcttagg
ggaatattaccttagagaaattttaaagtttgggcaggagttagccaggtagagcagaactaaagaaaagcactctagatagatatttAAGAAGACACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAAGACACAGaaggacaacccaggagtgtttttcaaggttattctacagactacaataaatcacagtaattattaataattgtctcacttacatgg
caaaaagtcgtattgtctcatcaatatccattcttctccttctttaaaaatgaaatcccagcattttagctgggcagttggctgaccatctaaagactgt
atttcttagtctcccttgcaattaggcatgggaatataactaagtcccagtcagggatatatgagcagaaggaaatttgtaatttatttttattttttga
aattttcataaaatctagctcccagaagaatgaatttgtgatttctaaactctgtcttcaaaggaaagtggaatgacttctattctatctttaaagctgt
ct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 NA NA NA intergenic
0 chr4 113689438 113689730 1000215 0 + 11642; Ya5ACA1174; RIP_Alu_chr4_113_01 CAGGCCAAAGTTCTTCACAA TGGCATGCTGCTATAATGTG SINE Alu Ya5 gaacgtatttaccaaagaacttgtaggctaaaattagagagtgagctagtcctaatttaattcctagccatcagaaatcttaggtcatcgtatctccaaa
tttttattattcctacatacaaaatggaaatcaacaaatgtaagttacttaagccacaagcccattaacaagaacaaataaaagacatattttgatattc
agacggaaagtatcacaatatcaagcatttgttaaacatctaggatgacgcacatattttatcttctagatgaggttagacaacatacattatatcaaca
caggccaaagttcttcacaaagaatattaaatatgctaacgaaatattctttgcttaaccttcaagcacattagttttatttatttAAAAATGTAAAGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATG
TAAAGATgactaattctaaacaacagtaaataaaatgtactcatagcctgtaagtgtatttgaatcttgtaagttacacattatagcagcatgccattac
tctcaaggcaaaaagcttcataaaaactgatttttaatctctagaattagatgtaaacaatagggaaatctatgaattttctaattagatgtagtcactg
acctagtagcccgctatctatacacacatgtgtacatacacatatacacacgtacacacacatttgtgtacatatacatacgtgtgtataaacacaaaca
catacacatacatgtacatatacatatacagtcatgtgccacataacaatgtgatgttttggtcaatgatggaccagatgtatgatgatggtc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 496 189 NA intron:LOC91431:NM:001099776:11/17
0 chr4 41782814 41782815 1000216 0 + Ya5ACA1184;pAlu4-41937980; RIP_Alu_chr4_041_01 TGGCTCTAATGACCAAAAGGA;NA CCCAGGTGATTCATTCCATC;NA SINE Alu Ya5 atccaaggctcttgtttttaaaaaacatgaggccgggccccaagaatatttgaaagggtttcaaatggaaaataaaacaaggggttggcaagtaaccgct
tcttgatgaataaggtttttccaggatttttttttttcgccccacggaactttgtattttccgtgattcacaatgtttggcgtgttctatatcacaaaag
cagtcttggcttaacgacccccatgaacaaacttaggaatgtgatactacttattgtactgtttatagtatgtctatttacctattgatcttactttttt
tcttaagcaactatttctctcattagtatgctatagtgaaaaagtttgcaaatgttttcattggctctaatgaccaaaaggaatAAAAAGAAACAAGATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAACAAGATTttattttgctacaaataatgtggtggtgatttttctttccagaaacgaaatcctgaagttcgacatgtagatttggagatact
gtgagtttgatggaatgaatcacctgggtggggaccttggaaacaagtttgtccgtccactctacaaagtttcctcctctcctacactgaaagactcagt
gccatgcagaagccttttttttaagatgaaggaaatattttatgtaaagagcaactcagcaggacacagaactaaaactactacttacatctaacagaca
cactacaagttgaatcaatttgaaaatcatgtttttatgcttccatagggaacattttggttatttaaattgttcataatgtcccatatttcacctgttc
a Other;Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 55;NA 467;NA 150;NA NA;NA intron:SLC30A9:NM:006345:17/18
0 chr4 138163290 138163582 1000217 0 - Ya5ACA1257; RIP_Alu_chr4_138_01 AAATACCAGTAACGGTGTTGAGC AATCTTGCTAAATTAAAGCAGAAAA SINE Alu Ya5 tagtagtcagatatagtgttttaattaaacatcagatattcgttgaatagtttccacaagctccgttttgttttgataaagcatggacattgaattagga
aataagtttgaattttattcttgctcctcgctcagtaaccaatttgggggaagcttcttagaagtcttttagattcagtctttttttttctttttggaat
gtaaaacatcggaacatctaattcataggatttttttttataaataaatgaaataaattgtgtaaaataccagtaacggtgttgagcttaagaaaatttt
tattctgaactttgggaggccgaggtgggtggatcacgaggtcaggagatccagaccatcctggctaacacggtgaaactctgtctgtattAAAAAAATA
CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGTGAACCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCATTAAAAAAAAAAAA
AAgttttttctgctttaatttagcaagatttagaaggatattaatattaataatttatttgacttttacacaaattgtaggaaactttgtattgtaatta
aaatccacaagagaaataactcattgattagtaccaagaaattcatttgggacttgtcttttcctgaatgacttaaatgtgttcatttgattggcaccat
gactaacccaaaatcaagagtgacagcaggccaatagggagaaacaagatggcaagtgcctgcacagaatggaagctgcagacccggatgtaaactagta
agaataaactagactaatgagttgctgaagtctgactgtgacctggtgtgagagtgagaagcccataacggctagagatacagggagaggttc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 466 155 NA intergenic
0 chr5 12239501 12239791 1000218 0 - Ya5NBC123; RIP_Alu_chr5_012_01 ATCAAGTTGACACTCAGTATTCACCAC CTAGTCTGCAGAACTGTGAGAAATGTA SINE Alu Ya5 ttatgcagaatgtttagtttcagacaaacattgctgaaatgatgggatgaacattaaaactgcttttatgtactaaataacaattttgtaatgttataga
tcatctcatttataatcagtacaaattcatcttctctataatttccataaatgcagtacatcaatttatgtgtatttaaagttaaaattaaattgtatgt
tgtttcaacatcaacaacctaaaaatgcaagtatttttaaaaatctagttgtattgaagtattatcaatccaatcaagttgacactcagtattcaccacg
acaagccgcttccacatttgtaggcattttgttacagcagcattccacttctcactactaatttctgtttagttcattcttactgcaAGAACAAAATACT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA
GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAGAACAAAA
TACTacagaccgggtaatttataaataatggaaatacatttctcacagttctgcagactagggaagacctggatcaaggtgctatcagattcagtgttga
gtgaggactcgctctctgcttccaagatggtggcttgttgctgagttctacaaaggataagggtccaaacattgtgtcctcacattgccgatgagatgca
tgggccaaactgctctctgaagcatcttttaaagtcattaattccattcatgaggccagaatcctcatgacttcatcacttccccaaaggccctacctca
ataccaccacagtagggattaagttttaacatgaatattggaggggcacattaaaccatagcagtgctctttgttgaattttgtcaagtat UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 55 490 180 NA intergenic
0 chr5 71952318 71952608 1000219 0 - Ya5NBC311; RIP_Alu_chr5_071_01 TCTTGGCAAGGAGATGTGAA AATCACATCCGAGGGTGTCT SINE Alu Ya5 ttctttcttttttgaacatctgttctacatgtgaccatattcactttttctgtagttttccccatttttcaaaattcttgaaagatcagtgacagtggtt
ggatgctttcattgtacaggttctttttgtatcttgaaaggtatttttttcttggcaaggagatgtgaacatatttaggaaattaccatatcttttgaaa
cttttccaggctaagtaacaattttattttacaaagaagacaaaaataaaatgaaagttaagtgattctgtagggcctttcacttgatgatctgcatttt
attccatttccctttaaactattgaaatgcctttgttctatcagtaaagtgttatatcattatgtctcagtattggatctgcttttaAAACTGGTGTTCC
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC
GTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACTGGTG
TTCCaaggtgtgtagacaccctcggatgtgattttttaaaatgagataaaatcatgggacacattactaatatcctagaaaaacaaaaacattaggagat
agaccccatactatactggatatttataaactttaacatacagcacaaataagatgattggagagaatagagcttcttcaatttttctgtacttaatggc
ttgacaaataatattaatagctaatttgatttttctatcacgcccttacaccactaaacttgagtctgatacaataacttaaatggtctctgtgggcaat
gcatcatttgaataaaaacagtctctggaggttgctttcatcttccaggaaggttacttcttccctaagatgtcatccaatatgggggttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Reference NA 60 584 279 NA intergenic
0 chr5 21687341 21687648 1000220 0 - 6000; Ya5ACA1320; RIP_Alu_chr5_021_01 TGCCCTTGTATTCTTACAGCC GATTGGTGGCTCCATCATGT SINE Alu Ya5 attcgtgtgtgtgtgtgtttgcaagagagatttttttcaagatattttctcaatattgaaaaaattggaccacttttttttagcccattcatttatattt
tctagaaattagaacctagtctgtcattttgggttcagttactttcctagacttatcatttgcatttacaatttaaagacttctaaaaactgcagtagtt
gttctggttggttttacactttgacatcatcatctagttgtcaacattgttatgtaataaagtttatcaatgtttacattaattagtgcttacagttttt
taattttcattttttgaaaaacatcatactgtgaggttatttatttttaaatgcccttgtattcttacagccatgaagtttaattAAAAAAAATTATTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGAGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTATTTTtaccctgggaattactttgaggaaagaaagtggtagatttacagttttatttatcaatgtgatagttctgggactca
tatgtattgtacatgatggagccaccaatctcatacttaacatgtagctaaccacatttcacttaactaaaaatgtaagtgatggtaggttaagaacata
catgctattattaagctttaactgaattatgatttttatctttaccttatcaatttactagaaaagtttgttttctaaaatcatattaattgatcattat
tctttttttaattctatatttcaatgctttattatgtatttacaaatggcattttttttcagtaccagaataatttttttccacagctcatcagatattc
tgaattct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 479 156 NA intergenic
0 chr5 82941832 82942134 1000221 0 - Ya5ACA1352; Ya5-MLS06; RIP_Alu_chr5_082_01 TTGGGGAAATTGCTCTGTTC AATGCTGGATGAAGAGCAGG SINE Alu Ya5 gattcagactagcacagcttcagctgattccttgaggagtcctggagttcaaatggcccttcagagtagtcccacattgtggtgaaatgagtctgagcct
ttatatagcagtcagtcattggatgtgggctgccctaggaaggatgtgtccttgggcaagatgtgaacacctggagcacaatcacttcctcaagggatga
cacctaaagaccatcttctgagcacttccaataagagccatttcatgtcaatcacatatgtctccttgtcttggggaaattgctctgttcttttggacac
ttgtccaggtacacagtgctgtgcctgtactcgaataatctgtgcaccaccaccttgccagcccatgccaactctgcttcctttAGAATCCTCCAGTCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAATCCTCCAGTCAGggagagccctgctcttcatccagcatttttcatgtttgtaggcaccaagaagatgcttatcatgaagtattgtttatcctg
gagtatatcatagctgtcctgaagggcttaattcttttcactttttgtcctgctcaccattctagagaaaacagctatttcctctcattcatccatattc
ttgatttcttcaacatttgttcccagtataaaagcaagttctctacctgaggactattggtacatacactaatatggtcacatttagtttttggatattc
atagttttttttgttttttgttttttgtttttgagatggagtcacgcactgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacctcc
acc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR NA 55 476 157 NA intergenic
0 chr5 88078911 88079222 1000222 0 - 6653; Ya5ACA1355; RIP_Alu_chr5_088_01 GGGTGGTCACAAAGACCAAG TAGGCCATGTTTTCCTCCAC SINE Alu Ya5 cacagtgattagcaaacaagatgaataacactagcttcctattttatatatcttttgaaaattaggtcgagccaaattagtgtgtaaactcacgtagtat
tttgctggacatggaaatgaaattttttccctcaaaaaatactttgtggtttgtagcctcaaaatgagagaaccagatcaaatccagaccaatgtttctt
ggatccaagtctctaccaaacactatgattagaaagaatggtgaggactgagaattgggtggtcacaaagaccaagatataatataagaaaaatggttta
gatgttatgatgttttacccaatatctcactgcaccgatttgcttgccattatggaaacagctagtagtggttctgaaagtcattAAAAGTAGTAAAAAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTAGTAAAAAAaaaaaaaatgtggaggaaaacatggcctactcagctttgatggaagtggcttgttactgcttaatagctagaa
tgctttggaatcctatattgaaaataaaaagtgtttggttgttcaattattctgtcattgtcaattcccagacagttggctaagtttaatgatcctctag
ggatagagaagactctcaatcctgtaggcataaaagtttgacacacgtaggatatagtaacattgaactaacaaaatcttatgcacttagcaaattcatc
ctcttacctcaggacctctaccataggtatgagaatcttctaattcagaaatagaagaaaaccaaaagaaagatactgaattactccaccctggtgataa
taaatattatat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 500 163 NA intron:MEF2C:NM:002397:6/11
0 chr5 103090216 103090521 1000223 0 + Ya5ACA1368; 3715; RIP_Alu_chr5_103_01 TGTCAGAGGCTAACAAAATGA GACACAGTGTTCACATCTATCTCT SINE Alu Ya5 gaattctggtagaaattgaactatcagatgctgggttggaccagattaaatttaaggccctctcttgccttgatattctgtgaattacctttcagtaact
cacaaatttatggtgcccttcatgtcccaccatatggactgtcatctattccactctgtagccatgactctcttgtggagcctctctttcatcccctaat
tagtgatacacaagagagaatgggtgaagtactcatttaccatcttacctgcttcctaacaaatccacagccaaggggatgtgctctgcacaatcagagg
tttgtcctggcagatgggtaggcttgattacgtatgtccacatactattctttgttgtcagaggctaacaaaatgatgacatggatAAAATGTGTGTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATGTGTGTGTGtgtgtgtgtgtatgtgtttcctactctgtagccttatagtctacataaaagagagaacagtgtacttttccatgtataaa
gaaagtagcaaaaaaaaaaaaaataaggtagagatagatgtgaacactgtgtcacatcccattgttaaatgtattcagaaggtctggggtgaagatggtt
cagtgcacctcttctggttatacctgggcacgaaagctggcagaagcagatttgactcaggactagcagttctctaggactaaatggatatgggaacaac
agggtcttgagaactcaagttgaatgtcaatttctgtcacaaatctgacacatactcaaagatttcattacagtcaaagagcagtactggtggggcattt
aatagg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 498 178 NA intergenic
0 chr5 142915574 142915871 1000224 0 + Ya5ACA1410; RIP_Alu_chr5_142_01 ACCAAGCCTCCTTCTATGGT CTCCTTTTCCTGCTGCATGT SINE Alu Ya5 aggcaaagtgcaaggttgtccattgcatcatgatagcaatattgaaaagctgaaaaacaatctaagtgtccatcaaaaggaggcttgctaaaataattat
catataacttaacaatggaatgtcagtaacccattcaacagagtgaagtagtgtaacgttcagtatttcattgtacaataaacaatgatttttttaagtg
aaaagtttattgcttttaaaacaccttttattttaaaatatttgtgtactcactagatgttaaaaaataatacaataatcctacgtatcttttaccaagc
ctccttctatggtacatttaaaatatatcttaaagaaaaatataataggttgcagaatggaaaatatggtaggatcctatttatgtAAAAATAAAAGTAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCGGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAAA
AAATAAAAGTATaccaaactgttgacactggatatctctgtggaatggaaaataacatgcagcaggaaaaggaggaaaatgagagattttaatttttttc
aagactgagtctctctctgtcacccaggctggagtgcagttgcgcgatctcagctcactgtaacctccacctcccgggttcaagtggttctcctgcttca
gcctcctgagtagctgggactacaggcacacaccaccacacttggctaattttttgtatttttagtggagacggggtgtcaccatgttggtcaggctggt
ctcgaactcctgacctcgtgatccgcccctcttggcctcccaaagtgctgggactacagatgtgagccaccatgcccagccttaattttcttaattta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 481 169 NA intergenic
0 chr6 26005979 26006279 1000225 0 + NBC212; Ya5NBC132; RIP_Alu_chr6_026_01 CTCGTGATTCACAGAAGTGTTGTAAG CGGGGTTCATCCTTAATACATACAT SINE Alu Ya5 agagtaagacagagaggggttcattttttattttattttattttttattttttgagacgttgtctcaccctgtcgcccaggctggagtgcagtggtgcag
tcttggctcactgcaatccccacgtcccaggttcaaacgattctcctgcctcagtctcccaagcagctgggattacaggtgcctgccaccatgcccagct
aatttttgtatttttagtagagacagggtttcgccgtgttggccaggctggtctcgaactcctgacctcaagtgatctacccgcctcggcctcccaaagt
gctgggattacaggtgtgagccactgcgcccagccggggttcatccttaatacatacattagagatatagattctgtttttatctAAAAAGTCTTTATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGTCTTTATAAaaatctgattgaatggttgaatgctgtgctaaaatctgcataatatcttacaacacttctgtgaatcacgagacagtttt
gaatgctaaatgtcagttaacagatctaaagggaccaacatctgctttcccaaattatatgaaagaagatcctgatccctcatcaggtgaaactcacatc
agacaacagtgtctgcatttctccaaaacccgcctcagccccatggccactttccagggttatcctgcctaccaagcactctctttcctcagaaaaactt
gggggaaaatgtagaataataattttttgaagttctgaccaacttcttgaatcactcagcatgtttttgactgcaggtacagaaaacgctgactcaacaa
attta UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 458 228 NA intergenic
0 chr6 50560438 50560754 1000226 0 - Ya5NBC327; RIP_Alu_chr6_050_01 AGGCAGGTTCAATGTTCAAA TTGTCTTATTGTGCTGGCTAGA SINE Alu Ya5 cactctatttagatctttgtcatagatttcttccatcaaaattttgtagctttcagcatacaactgtgtatatgttttattcaatttatcactgtgttta
atattttgagtgattgtaaatggcactgtatttttagtttgctgtccacatgttgattgctgctatatagaaatgtaattgatttttgtacatttatttt
atatcctgtgacattgtttaactcatttattagttctggggatattttcatagatgccttgatattttatatttagacaatgatgtcatgtacaaacagg
gatagttttatttttccttctttaatctgtttacctttttttttcttgtcttattgtgctggctagaacttctggcaatatgttgaatAAGAATAATGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATAATGAGaatgggtatccttgagttattacaaaccttagggagaaataattcagtttttcaacattaagtatgatgtt
aattgtagatttgttgtagattcttcttatcgagttgaataatttcccttttactcgtattttctgagagtttttttttaaaatataaattgggtttttt
ttgccccctttttctttttgtttttctgcgtggattcatataatcatgtgatttttgttaccctgttagtatggtggactacattaattgatttttgaac
attgaacctgcctggaatccttagaataaagtgcacttggtcataatgtatggtttttaaaagtgtattgctgaattctatttggtaatattctgctaaa
aactttatatttacatt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 668 339 NA intergenic
0 chr6 129778783 129779077 1000227 0 - Ya5-MLS19; 2128; Ya5ACA1492; RIP_Alu_chr6_129_01 GGGAGATTGGTGGGGAATAA GGTGGTGTGGCTAGGAAAGA SINE Alu Ya5 accccaaggatcctgtgacatcagaacttcccttatacaagcccccacatgctggggctgtgcagtctgtgtagggcccaaagggtctggctctgggcga
tggaactggccagggaatggctcaccatgctgtgtgccctgacatatctggcccagtggttacataactcccaccaagactgcatgaggctcccaagcat
atctttcccatggagaaagcaaaatatacagtaagaaaacaaacagctcttcagaaatacagattaattaatttaaaatttgaattctgagaatagtacc
aagagactaagtaaaatggagtgactgtccgggggagattggtggggaataaaactatgacggagtaaaaagaagttgatcAAAGAAAGTGTATAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCC
GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG
GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCNTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAGA
AAGTGTATAATTTCagcaaagaaagcttccctttggacagggttggcactctttcctagccacaccaccatgggccttttattttcttttttgtgagata
aggtcttgctctgtcacgcaggctggagtgcagtggcatgatcttggctcactgcagccttgacttcccaggctcaggggatcctcccacctcagcctcc
tgagtagcctggattacaggcatgtgtcaccatgcctggctaatttttgtatttttagtagagatggggtttcgccatgttgtccaggctggtctcaaac
tcctgggctcaagcaatcttcccacctcagcctcccaaagtgctgggattaccggcatgagtcactgcacccagccaccatggttatttagatag UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 437 123 NA intron:LAMA2:NM:001079823:40/64
0 chr6 138989442 138989748 1000228 0 + Ya5ACA1504; RIP_Alu_chr6_138_01 TTCGAGCCCATGGTAAGTTC TGCAGCAGAATTTTAGACTTTCA SINE Alu Ya5 aacaaccatccagtcctgcctgatcagtccacttgcttgaattctaaaacctcacttagcttttggaaacaaactctttaggtagaatgttaatacagga
gtctcttccctcgcaaagcaaaatcttgaaagagccacagacattttctcactgttaacagtggtagataggttgattatgtagtccataaattttacta
aatcatcagacacacttgacttttctctgtgacggcatagctttaagtaaatattaagaaggcatttgcatccattaaaacacagaatttaaaaagtaaa
aacacctcttcgagcccatggtaagttctacattttccagattctcagcattagcaaatattgtttatataatcaagaaactttcttAAAAAAAATTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATTGTAactaccactataagcaatcaagactaaacaaaaacattactgtatatcatatacaccttcttattgaaagtctaaaattc
tgctgcacataaaacacctaaaacaatttagaacatttgccatttctttctattctaagggaaataataggattaatgagatgttgatgagaaattgtct
tctctatgcaacactgctctctgcaaaaataccaaactatgtcaaacctgttcccaaaaggaagaggattaaattctacacctagaaaattaaattctca
agctacctaccacacagtctgtcaatttatataggttactataatcaagaaaccactgcttttggtctatgttttaaggatgaataattaatacacaaaa
agttttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 499 179 NA intergenic
0 chr6 20873358 20873665 1000229 0 - 3176; Ya5ACA1572; RIP_Alu_chr6_020_01 CGTGGGGAAACTAAAGGAGA TAACTTGCATTTCCCATTGC SINE Alu Ya5 tgataatttggccaatacagttataaagttacagaaatacagacaagacaacacatgctggcttctcttacaaagtcctttctggtattattccaaacca
aggtatagaatgaagtgatgtaaaaaaatcaactaaaagtcttatcatacaatgtttttgtttggggccataaagaaattagcctactcttatttttaag
aaaatgttatggtttgaaaaatgctatctaagagagagagaatgaataacaaggagttcatcctagaaataatgtatgtagatgtacagaatacaaataa
gtaaagctgcaatcctattgttaacgtggggaaactaaaggagatataaagaaaagaggatagcaaaacagataaactgagtgcatttAAGAATGTAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAATGTAACCattacctttgcaatgggaaatgcaagttaccaaactgtaatcaaatagtaaagttaactttactatactcataaacttaa
aacaaacaggctcattgaaaaaaactaaataaagtaataaatccctggctcctttactcactagaaggtagaagttatcatgtatttacttacaccgatg
agactggaaagtattcctaacatgtaaggcaatccacaaactttttcccactacattcagactatactaactgtatcagagattacatataatgagagga
tgcatacaagtgttctttcaaagcacatattaaaaatcaataaaaattattttattgaaatgcaactattgaaaaagcagatgtgcttttgtggtccaat
accctccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:CDKAL1:NM:017774:7/16
0 chr6 157877845 157878137 1000230 0 - Ya5ACA1579; RIP_Alu_chr6_157_01 GAACTGTTTTCTGGGCGCTA TGGGATGTCAGTGTCTGTTTG SINE Alu Ya5 aaaagaaattagctaatttagcaccggatactaaaatgatgagaagcctttacagaactctccctccaatcatatacatcagcaagagctgtttgatttt
ggatatgatgataaatacctatgcacaaactgccaaagcattgtacattagaggtacagaaattcattccaggtaataattagaaatgtagcactgccaa
aagattatatggaatttttttcagttcaaatagcaatctctttgaatctttagtaaaaattgtttttgtgcattgatgtttatacatgaaaaatggaact
gttttctgggcgctatattatctgagaccacacaatcagagtgcatccttcctctgctcagaactaaatatttgatattggtcattAAAAAGATAGATGG
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGA
TAGATGGagggatagatagacagacagacaggcagacagatagatagatataaaatcattttagcatcaaacagacactgacatcccagaatcaatactg
tcattaattctatattcatgtttagagactggcttacaggttagaatttgacataatgctgattccttgaacaaaacccctaagactaaattaatttctt
aaacatttggataagaaacatggatttcattattgggtaattaggtcactctgttttccagaggacattctttgggagaagattaacttaaaaactaaac
aaaacaaaagaacaatattaacaagatatagcagagacattaaaaccaagtgccctttggaacaagaagtagagaatcttttcctgtatcaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 493 186 NA intron:ZDHHC14:NM:024630:1/9
0 chr7 86555240 86555541 1000231 0 + Ya5NBC22; RIP_Alu_chr7_086_01 TCTGTGTTCTTTGAATGTGTATTACTCTTA GAATGTAAAGCTGTAACTTTCCTTTTCAAT SINE Alu Ya5 atatctcttcaggaacctgatttcaattcttttggataaatacccagatctaggaatcttagatgatatggtagttccatttttaattatggggggaatc
tccatactgttttgcatagcatcatagcacctacaccagtttgcatttgcactaaccatgtgcaagcgttccagtttctccatatcctcctcaacacctg
ttatcttttgtgagattttttaaaataatgaccatactaatgggtatgaggcaatatctccttgtggttttgatttgcatttctctggtgattagtggca
ttaatattttttcatatatgtgttgttcatttgtctgtgttctttgaatgtgtattactcttaaatctgacaaattaatagacctttAAAAATTAAGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATTAAGGTCttccttcactaattttttttagtgcaggaatggtttttataacatagtgaatgttaacaattgaaaaggaaagttacagctttac
attcaaaaaaagaacttctttttttgctttcatgatttttagttgacacataataattgtacatatttttaggtacagtgtgatattttgatacatgtgt
ataacgcataatgatcaaatcagggtagttagcatatccatcactttaaacatttatcacttatttatgttgggaacattcaaaatctactcttctagct
atttgaaaatatacaataaattgtttataattatagccaatctattgtgcttcctcctatctagctggacttttgtatctgttaatcgacctttggctac
tc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 471 156 NA intergenic
0 chr7 143677191 143677510 1000232 0 - Ya5NBC35; RIP_Alu_chr7_143_01 GAGAAGTACTCAGAGAGGACATCATTT GTAGTCATGGAGGTAAGAAAAGAAGACAC SINE Alu Ya5 aaaacaggtagtgccgatcaaaccaggcaagctgaagcccatggctcctggacacaaatgatgacagctgtgactaaactcctaggcaaggctctttgat
gtgtctatctggccaataggcctctacatcttgaaagcaaagtagcaacattgagaaaaaaaagggccaggctgtgaaatgcaagttcaaagcaagcagc
aaagtattaatagttgagcttctttctgcaaataaaacacagagctctagaggcagcccctgcaaaatcaagagcagaactcctcaaggagtcctctcac
aaacagagaagtactcagagaggacatcattttattcacctccaacagtcaattcttcaaatctgacttgatcattttatcttcAAAAAACAGTCAGCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTAAAAAAAAAAAATAAAAAA
AATAAATAAATAAATAAATAAAAAAACAGTCAGCACaatactaaaatccattccctgtcttattttcccattgcccctgcattcgttcaaggtgtcttct
tttcttacctccatgactacaatatccatctaattgctacaacagctgattgccttccttgcccctccacttcactatccacaccagtccattctctcaa
ctgcccccagagcttttttttctaaatctaaccttagaatctgatctcatcatgaccttgcttgaaacccttccaaggaggcctatccccagaaggatga
agtccaaactcagtagcaggaatggcctacaaggcctttcatgatttggctgcccgactacccttccaacttcattctctgccatttcttcaccacatct
catgttaaacccacactatt UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 515 179 NA intergenic
0 chr7 78195798 78196116 1000233 0 - Ya5NBC96; 55662; Ya5_451; RIP_Alu_chr7_078_01 GCCATCAAACACTCTTGACCT GGAGCTATGCCACAGAAAGG SINE Alu Ya5 tcttaactttaaaatgactgggagtaatcctcactttttttcttgttcttaacttgtatcccagtggtttggatattggcactaaaccaatgtgccttca
aattcagacattcctatttttaatcacaagatcttgagtgagtaaaatatctaacacattgtaaagacttaagtcatatgatcattatcatagatatagc
ctaataccattacaagtggctgatatccacatgattacaaaactctgcatctatagtatgccctcatttcttaccccttttcagtgagcagaagcctaag
aactagttgtaccctgtgagaaaatattaggagctatgccacagaaaggaagagtaagatgaatcattttttcagatatAAAAAGATCAGAGAAAGATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGCTTGCACTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGATCAGAGAAAGATGGacataccaattttgaaatctttaattcaaactttgatggtactaggtcaagagtgtttga
tggctctatctcatctatgtgaatagaattcccagctagaatttgagttccatagagtaagaaccaatgtgcattttgtttactgctaattcatgcgggt
atagcatatgatagatcattttttaaaaagctttttaatgaaagggtgaatacctgatgacaaattcttaaaattgggctgtttatataataatctataa
tctaaaataaagatccttcttatttttctacgatttactttgtatttaatatctcagttatcatcacccactgttaccataacctcgcagggaatgaaca
tccttaatgcagattattc UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 509 169 NA intron:MAGI2:NM:012301:2/22
0 chr7 43380646 43380938 1000234 0 + Ya5NBC182; RIP_Alu_chr7_043_01 GAAGGACTATGTAGTTGCAGAAGC AACCCAGTGGAAACAGAAGATG SINE Alu Ya5 gtttcattctttgcattgaaataagttatcactcatttcatataaaaagtattctggggttcaaataaaaagaaacactacgaaaattcatagaggttgg
ctccttttgaaataaattcaatgtaaagaaattctagaaaattacacctgttctctacatgattcaagagaacattgtatctttgaaacttcctgagaga
gcaaagaatggtaagaaggacagtaaggagataatgggtccaaccttttgaccaacagtcacaggtatgtgacttagagaccacgggaaaaggaattact
gaattagaagacaaactaaaacaaaatcatccccaacccagtggaaacagaagatgaaaatagaactttttaaaacccagaaatctaatttatgaacAAC
AGATGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATGGCTTGAACCCGGGAGGCGGAGCTTGCAGTGAGC
CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAGAAATATAATAACcagt
gaaaaaaagatgaaaatattttttatctaaaaaaatacatacctaattaaaattgaaattcttcatatttcagatagctggaattgatataataaaatat
atatgtaggttcatagtagaaaatttgtagacacataaataagaaaaaacaataataatccaatacacagcaagcttctgcaactacatagtccttctta
ccattcattgctctaataaagttttaaaaataaaatgttcttttgaatcatgttaagaacattgtgaaatttcctaaaatttccttcagtttcttgcatt
gaatttactccaaaaggagccaaggggttcctggaggaagaatttttgaactgaagaatgctataaacaaacaggagaaactgtcggacgcct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 563 287 NA intron:HECW1:NM:015052:6/30
0 chr7 96732684 96732909 1000235 0 + Ya5ACA1727; Ya5NBC201; RIP_Alu_chr7_096_01 CGCCACTTTCCCCAGTTA CACCTCCCTAAAAAGCAGGA SINE Alu Ya5 ttgtgaaaaaatatttgtaatatatatgatggaaaaagaggttagtagacataatttacaaaaagctgctgtaaatcaatatgagaaagataacccaatg
gagaagtgaacaagtgctatgaaaaagcaattaatcataagagaaaacccagaggttaataaacatgagatgtttcacctccctaaaaagcaggaaaatg
caaattaaagtaatatacatgtatcacttcttgttcatcacaatggcaaaaattaacaagaatgagaacctagttctggcatttctttattcatgcattc
ttctatttaacacatatttattaagtgccttacatgagccaggcatgattccaggtgttgaggatacagcagtgaacaagagacAAAAACCTCAGTCCTT
GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACCTCAGTCCTTatggagcttgcagttaactggggaaagtggcgaagaaggtactcatattgctaatgaa
aataggaagtgttatagccttttggaaaggaacttaatatttattaaaataaacacataatcagcttgaattctaacagtagacttgaagagatttccat
catgtatagctgagtgacaaaaagcaagactctggaatgtatatgattgattatcacatggaaaaaaaaaaaagcaatgacagtctcctccccaccacca
aagcataggtctacatttatatacatcattgatgttaaaaccaccatctaaggtgtgaaaacacatgcatgaaactgtttacattgatcaattgaggaga
agtggaatggggaagcaaaaatctca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 460 218 NA intergenic
0 chr7 83547815 83548123 1000236 0 - pAlu7-83308024; Ya5NBC210; RIP_Alu_chr7_083_01 GAGGGGGTAGGGATAGCATT GTGTTAATATTGTCCCCACATGTAA SINE Alu Ya5 atagtgcctagacagctagaaaacataaatttgcccaatttttcttgcctatcatgcccccatcagtccattcttcaggttgggtcattcttctaaatat
ggatctatatctaggtctagctacatagataataaacatatattacatatatatgcaatgatctcatatatatatatgaatcatgtgcattctttcttca
acttatttaaacctcttgcattgttttaatttgaacaaatgtaacacaaattatgttggaatctatgtcataggttatagtaattaattatttttactat
tttcatatttttgtatgtgttaatattgtccccacatgtaaactttaaaagttcttaatcacagagattaaagtatattttttAAAGAATTATAAGCTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAATTATAAGCTGCaaattataaactgagtaagatattaatcaaaattgcaactactcaaaataatttataataaagatttagtatgt
tttctccaaatgaaaatataatttggaatgataaatgtccaataaatatgaatggtaattttaagcctacggtataattttttatttttttttaggtagt
ctctttttttcttgttattattatactttaagttttagggcacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctg
cacccattaactcatcattcagcattagggatatctcctaatgctatccctaccccctccccccaccccacaacagtccccagagtgtgatgttcccctt
ccgtgtcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 62 750 424 NA intron:SEMA3A:NM:006080:4/17
0 chr7 38474998 38475312 1000237 0 + Ya5NBC216; 4601; Ya5505; RIP_Alu_chr7_038_01 GATGTGACCCTGGCTTGTAAA CAGAGTCCCTGTGCAAAATG SINE Alu Ya5 ttgtcaaatcaattattatcctgagaaaatggtatagtatcagaaatatcttatttagaataactaaacatctatttctaatattttgttttttaattta
gaaattaactagcatgtatttaattaggataaagtgtccaacatttttgatacaactgatagtgattttctccaatttatgaagtcagagatcctgcaaa
gaggggaatgcctttaactagttcactattacagccctagcacctagtacacggcaagcatgagtaaatgaataaattccataaatgaacaaacaagcca
gtgaatgaagaaacttggcactcattccactataagagcatattccgatgtgaccctggcttgtaaaaacttaatgtaaccagcagtAGAACATACAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAACATACAGACacagagtaccagcataccaggctcttgattctgatattatctgcttaaaagtttcattttgcacagggactc
tgagacatcaccatttccccaaatgtggcatcctcaggacacttcttattagctgtcaaaaccaacttaatttctttattaagatgtttctttgttctca
gaaataaaggaaaaattaagttgagcttatcacagctacagattgcagacctgagcactctccccttcgcaatgccctaaggaaatctgcctccctggag
gggagtgtcagtgcttcctgcagaccctcttgcagtggaggaggcaacccttgctgtccttcacttactatggagatggagtatgaggaagagttttttc
ctagctctcttctga UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 456 141 NA intron:AMPH:NM:001635:7/21
0 chr7 127407402 127407708 1000238 0 - Ya5NBC354; 239207; RIP_Alu_chr7_127_01 GTAGCTTGGCCTGTGCTCTT CCTCTGGGCTGAGAAACTCTT SINE Alu Ya5 gatcttgcaagtctccacttccatgaggtattctggcacacacctggcagccaaatgtaaaagctacttacttgcataaatttagagtgactttttctag
accaagctgttttatttgaacaaaatggttctgagatgtgtggagtgtacttctaaactattgccttttttgagctttcactcaaataaaattgctctga
gctcctcctcctgaggcaagtgaattccaaatgtctagagattagtatacttagcctacagtaggatgaggaggaaaaaccagctagtgtcaggaatatt
aagacttaagaaccaaagagcatgaataaaaaaaacctctgggctgagaaactcttagcaagagtccttcacctcactaactttactttAAAGAAAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAGAAAAAGAataaaataaaataaaataaagcaagcaaaaagggaaaggaattgtgaaaagtcaaggttctccaagagcacaggccaagcta
catatatcctatcctgagtagcttgaatcctgggccagctgtgggtcaagaatggcatttgccttattcatctatttattttttagttaccatactctaa
agcagggaacaacagacaacttcctgaagactaagtctgcccactgattttacagagctcatgagctaagaatgatttttacatttttgaatggttaaga
caaaaatcagaagaagaatatttgtgacatgttataggatataataaattcctcttcaaaggttttagcctgtaaattgttaagtacaatgagttctgag
gtccttt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 65 466 148 NA intron:SND1:NM:014390:15/24
0 chr7 11990770 11991024 1000239 0 + Ya5NBC361; RIP_Alu_chr7_011_01 AATATTTTCTCCCATTCTTTTGG TGTTAAAAGCGCAAGTCACAA SINE Alu Ya5 caaaacaatgggcaaaactgagagtacagaaataagctgttatactaaaggtcaattaattttcaaaaatgggtctaagatatttaatggggggagataa
agctttttaagaaatggtactaagacaataatatcttcatacaaaagaatgaaattagaatccttcatactataaaggaaaattaactccatatgaatca
tagacctaaatgtgaaaggtaaaactataaaaattcttagaagccacagaggagtacattttatcctttaattagtaatggtctgttagctaggatgtta
aaagcgcaagtcacaaaagaaaaaagtgaattggacattatcaaaattaaaaagaaaaaactttttgtatttcaaaggataccatcAAGAAAGTGAAGAC
GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCG
GGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCG
CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTGAAGACaacccaaa
agaatgggagaaaatatttgtgatcatatatttaataggggacttgtgtctagaattaataaagaactgtcaacttcaacaaaaagaaaaatagcccagt
ttaaaaataggcaaaagatttctcaaagaatatctattaatgatcaatagacacacagaaagatacttaatataatttatcatttgggaaatataaatca
aaatcacaatgagatatcataccacttcatattcactagggtggctaaaatcaaaaggcagacaataagaagtgttgatgagcatgtggagaagctgaaa
tcctcataaattgctgatgaggttctaaaatggtacagacacttagaaatttggcagttcaccaaaatattaaacatg UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 423 131 NA intergenic
0 chr7 39558596 39558896 1000240 0 - 33173; Ya5495; RIP_Alu_chr7_039_02 GCCTTAGTGTGGCCCAAGT CAGCCCCAAACCTTGACTTA SINE Alu Ya5 agggggaggaggagggagtctggggctgtgtagtgttttctgataccacttctgacaccaaatgcgtgtctattattgacaccgaatatttttcacacca
attctctgacaccaactgggtgtccaatagttcagttcaattctgacactatctacctggagttagtgtcagatcccacaagttaaagggctcagtccca
aaagactgcccctatttcagctgctagccaccagtgtggtccccagtgaaccacacttctgtctaactgacaacaaagttggggattcctatgatcctca
cccttgccttagtgtggcccaagttaactagataatttgttagaatgaactcaagaaaatactctacttactattacagtttattatAAAGGATACAACT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGGATACAACTtagggccaggtggaagagatccctaagtcaaggtttggggctggagggtacagagcttccacatcctttccaggtactaccctccc
agcacacctgtgtgctcaccaacctggaagatcctcaaatcttgtcatttagtggtttttgtggaagtttcattgccaatgcataggcatgattgattaa
atcatttgccatgggtgatcgaactcaatctccagccttcctccactccccagaatgaggtgggggagggagactgaaatttctaaccctccattcatgt
ggctggtttttctggtgaccagctttcagtgagtcagctcatgagtatatgaaagacaataaatttcagggatttttggagttctatgccaggaacaggg
t UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 452 138 NA intergenic
0 chr7 136502166 136502464 1000241 0 + Ya5524; Ya5NBC242; Ya5ACA1650; RIP_Alu_chr7_136_01 GGCAATCTGACCTTGGGTAA GGCTATTCAAGTGGCCAAGA SINE Alu Ya5 tggtaatgtaattgtttgaaggtgtgtgtctattttcattagactcagagactcagaggcgggtcacctgcttgtctcttggttgtgcaacttcctcatt
gaaattactggtcataaatattgtcatatatatcctcaaacctccaactaacagcagaaatcccctgcaagctcttaactgagacacctttgaatagctt
cagtggctattcaagtggccaagagctcattacctatacagataatttgggtgatttaatagattaactcaactactcaattgggtaattcaaattatta
caatatactaaacaaaattccctttcctccagtggttttatcacacaaagctaaacggaatatatctactttgcagtgtctctttaaaATCTAACTTCTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
TCTAACTTCTGctagcatatatcctctttgtcatcattattataaacaatttacagatgcagaaactgaggctgaaaaacattaaacaccttacccaagg
tcagattgccaaggttaatggctattctgggacttaaactcagatctcttttatttcataatttatgaacataaacactatgctgtcctgaaaataacta
cattttctttaaaagcatctttttataagtggcttctacagcactataaatctcaaaattctttctccatataccatttaatttgtcagtttctttctca
aaatgtggccctgaaattaacaaaatgttgtcagttaaagacggagttcagggggattatcaccaaatttggtttggaccccagaagtctatcttagta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
E:Insertion-specific detection:PCR;C:Reference NA 60 605 310 NA intergenic
0 chr7 134839756 134840073 1000242 0 - Ya5ACA1592; RIP_Alu_chr7_134_01 ATTGGCTTGTGGATATGCCT AAGAAATGCTCCACCCCTTT SINE Alu Ya5 tgatgtattgctattaggataagtcttgctatttgtataggtgtgtatgtcagataactgttcaaaaacaacttttttaaagtatggctactaaaatctc
acctcttgagttttaaagcaattatggagtagaatttgaaatcaaaataatcaaaattggcttgtggatatgcctaaaaccagtttggaaaaaaggtcaa
ggcaaaaaagcagtgtaattagaagaataaaatgctttcccttaaaaatagtagatgtgaccgggcacggtggctcacgcctgtaatcccagcactttgg
gaggccgaggtgggcagatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacAAAAATTAGCCGGATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGATCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA
AAAAAAAAAAAAAAAAAAAAAAATTAGCCGGATGtggtggcacgtgcctgtaattccagctactcgggaggctgaggcaggagaatcatttgaacttggg
agtcagaggttgcagtgatctgagattgcgccattgcactctagcctgggtgacagagtgagactttgtctccaaaaaaaaaaaaaaaaattagtagatc
ttatattactgcttttggaagcaattagtgaatgatgtaggcaaaatagtgattgaattttgaaaagcaattagactgaaatttcaaaggggtggagcat
ttcttaatagcaacaaacagatacatggtcattaatccaaatatctgaaattttctgagcatgtttttcagagtttggaatagagtggaagtgctaattt
tctgattatttaagaacc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 850 516 NA intron:CNOT4:NM:001008225:1/11
0 chr7 113740755 113741049 1000243 0 + 238237; Ya5ACA1611; RIP_Alu_chr7_113_01 TTTTGGTAAAGATGCCACAGAA TCCTAAACATAATACGTACAGGTGA SINE Alu Ya5 ctgaacatcttcatggtgcaatcacatagagtccagaaattctctgaaaataaggaaagtttctagactcactacatgcatcattcagggaaataaaaat
atggggttacattctgtgtctgaaagtttccaagctaaaagacaccactatgaacataagtttatagaataacatagctttggctcttctgtgatgaatt
atttggctcagtggtaacaatttacacatgacttttaggacattaatctaaaagatacttccactgattatttggaacatctttctggagaagacagtct
ctaaaatggagaatttttggtaaagatgccacagaatataatcttacatttccattttactaaattgttaatctattaaaggtAAAACAAAAATATTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAC
AAAAATATTGTCattatttgaaattgtataattttgtataatgttaaaaataactacaagaaaggatatataattctaacacatatcacctgtacgtatt
atgtttaggataattataatccaacattttatcttgagtctagttgtaactgatcaatattttttcaaactgaaagtctggctccattagtggtttatac
attaatttagtggattgcaaccagcatatttaaaaatgtaatgtaatagaataaatagaacagaacagaaagcagaaccaaaaagaatagaaaagaacag
aataaaatggaaaatacatgctattatggattaatatcctgtgaaacttttatgtacgtgtatttgagttctcagtgctaattacatttttttct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 496 184 NA intergenic
0 chr7 120668352 120668670 1000244 0 + pAlu7-120421716; Ya5ACA1622; RIP_Alu_chr7_120_01 CATGCTTGCCAGAACAGAAT GATGCTGGTTTTTGAATGGC SINE Alu Ya5 aaattgaagactcagaggcctcagttctgggcctgccctgtcattaacagcatgatcccacttctgttatttaactctttgggcctcagattgcctcttc
tgttaaaaaaaaaaaaaaagtgacggggaagggagggagaaaggacacactctaaggcctcttctgactccatccaacgtgatgctacacagccactcaa
tgtgaacctctgtgaaggaaagactaccatttatctaaggaggtttgcttgagaaatacatcaacaaagattaaactttaggctgtgtctatatcaaaga
tgtggaggaggttggttattaatgacaaaccatgcttgccagaacagaattagaattagaaagcaagatatattctgaatgAAAAAGAAATTATAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAATTATAAAACAgaattggatggaaaaataagcacttttgaggaagataatctttattttgccattcaaaaacc
agcatctctcctaaattttctgttgtttcttttagcagtacggccattctctacaaccagaaactttagaaacatctttcacatagcagaccctcgtttt
ctccaagatatgcagtcagttcttctggctcactcctgtcaggcccatctcttcactgtacctaaagtaccactccttccaggtcttcaaatcttatctg
tccctaaaggcctgttcacatattatctgcttcatggacccttccagaaaactctgacctccatgactctttctctatttggaacaattgtggctcactg
agagtagaggtgggaaaat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 476 158 NA intron:C7orf58:NM:001105533:16/18
0 chr7 24644468 24644773 1000245 0 - Ya5ACA1648; pAlu7-24386109; 238947; RIP_Alu_chr7_024_01 GCCTCACAGTTTGGTTCTATGG GGACCTGCATTTGCTTTCTT SINE Alu Ya5 accactcgtccctttgactttcactcctttgctctaagtaagagctatgaagaccatttatttcttcaggaaaatgttatatgatcagcaacagtacttt
agacaacagtagtccttggtttaattcaggactttaggagaagtaaaggaacagaaatgatcaatgacttgaaaactccattccttagtatgtgtattaa
cctaatgcttccaaattgggtgaggagaagtaggaatgtggaaagactaatggcaaggggttgggggtcaggggagagtcatgtgagaaggcagaatcat
gttagaaaaagaacccaagcacatctgaagattttttcatatcagcctcacagtttggttctatggaagaagagaatctcactAGAAAATACAGAAATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAATACAGAAATTGaagggagaaaaaaaggtttttttagaaactgtagctataaatatattaacatggaaaaccaacatacttggattcaa
ctgggatcaattttactttttctaagaaagcaaatgcaggtccacatttattaacatatagctttttaagctctgagatgttgtcaaaaacttggaacct
ctaattcactttaaggtcagattttttttattagctttcaagaggcaagtaccaacttaaatttaactaatcaaactaaaaaagacaaaggaaacacaca
caaaaaataaccagaggagcaagtgagccacatactatttaaataaataaatcttgttttctttttttaaattaaagagcactattgcaacactagcata
actcaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 499 176 NA intron:MPP6:NM:016447:3/13
0 chr7 27480875 27481135 1000246 0 + Ya5ACA1672; RIP_Alu_chr7_027_01 GCACATGTAATGGGGCTTTT GGGCACTGTACAAAATGCAA SINE Alu Ya5 caaaacagtgctgaaattctctcacaaactcatctttacactcttccaaaatgctgaatcggtcaccagagcttccactattacttcacctaatgaccgg
cttagaagcccaacacctggtaggtactcaacaagtaaatggatgagttggtgaattaagttttaaaattaccttcatttgctacacatttagataagat
tctggagccattctcctcttaggagtcagtcgcacattatttctcgggatgagttatctcctgggaagatttccaaagaatcattcattagatcactttt
cacttatttactcactattcatctaacaaacatttcctgagggcctactacatacaaggctcaacagcacatgtaatggggcttttAAAAAATTACATAT
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATTGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATTACATATataaatatacaaagaaaaaaaggca
tatcaaaataaagaacaaaagatataccaaaatgttaacagtggtgggatcattcatcatttttcttccttctttttgcttatttgcattttgtacagtg
cccatgtcttgtttatttaaagtgttctaaagcattcaagatgcatcttgccctcaaaaaacatggatagagtgagtgggcaggaaatgggacaagacaa
gctgaaaaatgacaactctgacacaagtgcagaccgtgatcatttccctaagaggcttaaatgctgtcagggttaagaggaaattgcgatgaccttgaca
gatgagagaccaggtcacagaggtaccatccttgaagcacaggagggtttctccagggagc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 437 162 NA intergenic
0 chr7 76405161 76405162 1000247 0 + Ya5ACA1693; RIP_Alu_chr7_076_01 CTCAAAGCTCAGAGGAGGGA ATCCTACTCTGCTCCAGCCA SINE Alu Ya5 tcaccaggaagtcttcctgtgtttaccctaaacataattcagagaccaattactcctcaccgcctccatggctatcactttcgtcagacttgctacattt
tagcaatcgtcttataactgttttcctattcccacccttgcctccttccattctattgcccacaaagaaacataagtgatccttttgaaacataagtcag
atcacggcatttctttcccaaaaagaaatgcaagtgtctaaattcttcgcctacctcagggtaaaagtccaagttcttatatggcctttaaagacctctg
tgtactctcctcctccctccattagttctctgatcttcccttcttcttttcttcctcatcctactctgctccagccacgcagtctttcTGGCTATTTCTT
NNNNNNNNNNTGGCTATTTCTTgaacatagtaaacatgatccctcctctgagctttgagttgtttcctttgcctgggaaattccatctggagacttccgg
gcttgctcacctatataggcaagtctgtacatgagacctgctctgaccactcaatttaaaatggcagcaaaatccttcctggcaccccacctttaaaatg
gcaacaaaagccttcctggcacctttcctttctagctttggacctattacataatctatgtatcttttgtgttatcatctgccttccccgccagtatgta
aactccacaaaggttgagatttttgtttggttcactgatgtatcccaaggacacagttcagtatctaacttgcagtggaaactcaccaagtatttatcaa
attatttgat Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 396 80 NA intergenic
0 chr8 61367552 61367857 1000248 0 - Ya5ACA1766; RIP_Alu_chr8_061_01 CATCATGGTATCCCAAGCCT TTCTTCTGGGCAGTCTGTCA SINE Alu Ya5 tttgcataattatttacaacgttcaggaaacctcatatatattgacttttatttgtttgacagttgtgagttgatgagagtgctaatgtcttagtgaatg
aatgtggatgaaacaacatgtgtgtgcagttctcagaataaaggcacacgaggttgttttttgatttacagtcagggcttctgtatatcaggcttccttg
ttgatggctctgtgtgaaacccaaaagccccccatctataggacattttccaatggttatatgatttctaaagcctgtttctcatggttataacattgaa
gaattttgagtgtgggtatactattttcaaagttctatgttccttgagcacaaagaccaattctagtcatcatggtatcccaagcctttAGGACAGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGGACAGTGTCttccagagtacctaatcaataaatatcacctggatgaatggatgtatgattgagcatgctgaagtcagtaaagcttaggtaga
gcagtgtcgttatagtattgacagactgcccagaagaaccccaggacttaagtgtttgtattctcattgtgtccttcaatgtgcagaaagctcatatctc
aaaagatcttctggccttcttcctatgacctcagctccatgatggacccgctgattacctctgtcactcttgaaatgtaaatatcatctcctatttatgt
gatcatgggttaaggaggcttagagataactagtcccaaatgcatgtgggtgtctaaaaccagactatcttgatgtcaagtacctagagctactgctgat
taccag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 471 154 NA intergenic
0 chr9 35793109 35793399 1000249 0 - Ya5NBC240; Ya5ACA1878; 238279; RIP_Alu_chr9_035_01 AAGGGCAGACATGCCAAATA TCAGGTCTCTTTCCATCATCTCT SINE Alu Ya5 aataacttcatgagaattcagcagaaaaccaaagctagtttcagatacagtgtggggtgatccactgggatgctcattggctatgagacttatttcagaa
aacctgtccaactcatgcaagattctattttatgctccacaaatccatgggcctctgagtcatttgaacatagctaaaacctagtataacagaagagtac
caaaggtttttagtacaatcttccttggtttctcttagttctactagtaaatgttccttttttaaatttcagttttctgaacaaaagggcagacatgcca
aatattggtcagagagtaaaataatgagaggaaaaacaggagataaatatgttcggagagtaaaataatgagaggaaaaacaagagatAAATATGTTCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATATGTT
CAGagactccactcattttatgagttcttagaggtaaaagagatgatggaaagagacctgagatatttaagacagaaagatagaaactctctacaggcac
aggactccttgtggcaggtaaaactcactgtcccagttataagccccagactccttgtttacccattattaccagaccatgggaataaggggagatgaga
gaacaggacttcagaggactagaaggagaaaaaccacaatcaaagaacagtggaagtgatttaaagtggatgaacttttaaggagtggggaagactcacc
ttaacaaggtcattaatgagtgaataacgaaacatccagtccaagttgatgctgtcattttctagaatatcctggtaagtgacatggaata UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 505 202 NA intron:NPR2:NM:003995:12/22
0 chr1 239427177 239427475 1000250 0 - pAlu1-237657038; Ya5ACA614; RIP_Alu_chr1_237_01 TGGTGCTTCTTGCTATACCATC CAAACATTTTCAGGCTGGATT SINE Alu Ya5 atagatagatagataatgtttaattttggtaaattatgcatttgggaagaatattattatacagtagtaatgttttgaatatttcaactagatcaagttt
gcaatctttttttttttttttggtcttttatctctttactgattgtttttttctgcctggtccatcagttaataagtatatgtatggaaatctctcacta
caattttgaatttttatatatctccttttacttctaataatttacctttgtatattctgacactatttattaactgtgcacaagttttaaaatgtgtctt
cctcatggattgactgttctatcattatggaaagtgatctttatctctagtggtgcttcttgctataccatctactttgagattAAGATACTTTGATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGATACTTTGATTAGtatttttatggtatatatattttctatttttagtttcaacttttttatattcttatatttaaggtgagtctcttgtgtcatataa
ttattttttaaatccagcctgaaaatgtttgttatttaattggagtgtttagtccatttacatttaatgttattgatatattaagtttaaaatctagaac
tttacatttattttctaattaacccagcatattccttatttgttcttttttttttttttttacattcttttggatggattcagtattatttatttttccc
tttctccccagtactagctggtcagatacacattcttttaccattgtattagtgcttaccctagcttatgaaatataatacatccctgaaattcaagtc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 481 166 NA intron:RGS7:NM:002924:2/18
0 chr1 237492891 237492892 1000251 0 + Ya5ACA630; 14975; RIP_Alu_chr1_235_01 CCAGTCTGCTAAGACAGTTTTGAA AGCGGGTACAGTAGGCAGAA SINE Alu Ya5 accagtacacatgaattatcttacagttttcatgggataggagtgcagataagagttagctggtttctctgttcaaggtctcaaccaggtttaaatcaag
gtggggctgagctgtgttcttacctgggacttaagagtcctcttccaaatcactgattgttgacaggattcagttccctcaagctggagagctgtgtttc
ctgttttcttgctggctgttggccagggatcatcaacttcaactcctagaagccagcctcaggtcctaaccacattttctcctcctcttgcaaaatggca
gcttaggttttcaaggacagtaagagaatacctttcatttcgaatctctctctctatccagtctgctaagacagttttgaattacttAAGAAGGAATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAGGAATTGGctgtcccatcatgttcaaatgtctcacccatgttgaaggagagggaataatacagagtgtgcacatcaggggccagg
aatcttaggggttatatttttctgcctactgtacccgctcactaaaatcttttctagcgaaaagggagaatgttttcacaaacagctatgataccaaatc
taatcccactattattatatactcccaacattttcaaaaaaaaaaatctgagtattaggactaaatacttagaatgtattaaaatatatactaaatgtaa
gatagtaagttttgtttaaagttgaggctcatgtttataattcgttgcctttttcttcaacagaacatttaaaatctcctgtatatttcatggaattgca
aatatgatgc Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 498 159 NA intergenic
0 chr1 77537583 77537584 1000252 0 + Ya5ACA641; RIP_Alu_chr1_077_01 CCAACTCCAGGCTTCTTTCA TTGTTCTCCTTTGCCCATTT SINE Alu Ya5 tccatcaataccctcccattccgctgctcctcctttcctgagaaataggagtactgttaggtttgttatatattcttccagacctttttctatacttaca
tgcatacatacatgtatggacacatgtgcacatgctcatatacaaatgcattctaaatttttataatgacttttccaagttatatcaatgttgaatgaca
gtatctttttctacagaccctttccaaccagatacgattcatgtttaaaatttttgcaaacctgatgagtaaatggcattttgtgttttaaatttgcatt
tcatgggttactattaaggttaagtatattttcatacactcattggccatgtgtatttcttccttatgtgaattgcttgttctccttTGCCCATTTTTCT
NNNNNNNNNNTGCCCATTTTTCTacagactttttaatctttttcttatttatttcaaggagcatttaacatattacagatatcgtattaaacagtattaa
gtaaaatatgatgtcagtttatgcatcacatgaaagaagcctggagttgggcagttcacggccaggggtagctttacaaaacatttttttgaatgttccc
attaacggttttggatcacctattgtgctagaatgtctgcctccccttcttaggtttcctctcccaccataagtccagaaactctggtgctcagtcagct
taaaggcttggttctaattgttctggctttgaagagagaaaaactggaaaatatctgatgaagttttgttattgctgttgctaccacattatattgctgt
tgaaagcggg Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 471 151 NA intron:AK5:NM:174858:5/14
0 chr1 88888321 88888322 1000253 0 + Ya5ACA659; RIP_Alu_chr1_088_01 TCTGTGCAAAGCAGAGGGAT AACAATGCCTAGCACAGGGT SINE Alu Ya5 ttctaattcactttaaatggagtttacattggaaaaaaataaagacagtggagcatttgatcccatgcatcaaaaagcacttactgagcaccttggtaat
acaggttatatctgcatgcctcaatttctagcatgcttacataaattacctcatatgtgagctaagtaggcagataatcaatgagttattgtctgtgaaa
cactttaactgaatatacaatgtaaacattaagaaaaaatttctattttacacataagcaaatggggtctcaaagaagtggagagacctgcctaatctga
caggccaggtgtcctgactaccataaagctttgcatcacactgctttcctgtgagtctcctctgtgcaaagcagagggatatgttGAAACCTCTGATTTG
NNNNNNNNNNGAAACCTCTGATTTGaaagggtttacaaatcagttatagacaaatgacatacacataaaagaataacatgatgataatagtgaagatggt
gatgatagttgacacttttatggtacttaccctgtgctaggcattgttatacatgaagtgacccatttaaatctcttagcaatctttcaaaataggcatc
atgagataattaaggcacagagagatttagttacttgcctgaagttaccgggatagtgtgtggtaggattgaaatcatttgaagtcagctgcctggctcc
agggactatgtttgactactatactctactgcctttctataaaacagtatatggaatacattctatattcatgatctaattagtgtgttagaatgtcagg
gagatttata Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 478 163 NA intergenic
0 chr1 148958076 148958394 1000254 0 + Ya5ACA702; pAlu1-147466446; RIP_Alu_chr1_147_01 AATGCAATGCAGCAAACATC CAGTTGCAGAGGACTCCCAT SINE Alu Ya5 aaaatcctatacaaatatagcaaatgcatatttgtgtctcggttacaaacattcattttctttctttttgagacggagtctcactgttacccaggctgga
gtgcagtggtgtgatctcgactcactgcaacctcccccttctgagttcaagcgattctcctgcctcagccaccttcatagctgagactacaggcgtgagc
caccgtgcccggcctcattttcttatttatttaattttattctgcttatatattgaacattcatgttctagaggtggactgctatgaacaataatttcat
caaagcaacaaagcagtattcattaatacctaatgtaaattaaatgtgaatgagcaatttaatgcaatgcagcaaacatccaataGAATTCTCAATTAAT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATTCTCAATTAATtcaaaatacttcagcaaatatcttcatttcttaaaacatgcagtttcctggtatcataaaaccctc
aaatagttgagccctaacttccaacagagtatttgagacttcaagaaacaataaaagcagctattattaagatataccaaaatacaagaaatcataccat
gggagtcctctgcaactgggcagtggccatcttcttctgataaagtattttctttaattcaaccttgtgacacaaatacaagctttaacttagagctcat
ttttttcctctaacatttcagtttaccacatataaaattcaaaacaattttatgtgaataaatttgaatttctttaattaaaatagagtcttcaaaaacg
tagaggtcgatattgcagt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 558 224 NA intron:HORMAD1:NM:032132:2/15
0 chr1 160319305 160319609 1000255 0 - pAlu1-158748606; 52678; Ya5ACA728; RIP_Alu_chr1_158_01 ACACGAGTGCTTCTTCCCAC CATTCCCAGAGATGTTGCCT SINE Alu Ya5 tttaacctgggctgccaaatttaagaaatctagccacattaaagagccaatttgaggccaggcacagtggctcacacctgtaatcctagcactttgggag
gccagggcaggaggattgcttgagcccaggagtttgagaccagactgggcaatatagtgagaccctgtctccaaataaaaaaattgccaatttgaaaatg
tagttacagtggaggctatgtgtgtttatggaaaatagcatggactcaagataatatgttatctgtcacttggcccacaggagacatgaatcttcctctc
cgcagaacaataaaatgcttctacacgagtgcttcttcccacccaaagaaaccaaaagaaaaagcaaagagtttacagtcaagatAGAAAAAAAGGACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAAAAAGGACACaaccaaggagcttttccattgtgcgtggtggactgagatttccaatccaaaaggcaacatctctgggaatgaccttttca
gcgttttgtactctaccagaggcaccatggggcctctgggtggagagaacttgtcctcaaaaatagaggtgggccaataaacatatgcaaaaaaagctca
acatcactgatcattacagaaatgcaaatcaaaaccacaatgagataccatctaacaccagtcaaaaggggtattactaaaaagtcaaaaaataacagat
gttggcaaggttgtaaagaaaaaggaacccttatagactgttggtgggagtataaattagttcagccattgtggaaaacagtgtggcaattcctcaaaga
cctaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 469 149 NA intron:NOS1AP:NM:014697:1/10
0 chr1 208361944 208362245 1000256 0 - 15439; Ya5ACA759; pAlu1-206934322; RIP_Alu_chr1_206_01 CCCACAATAAACATGTGGCA CAAGCAGCTTAAACCAGGCT SINE Alu Ya5 gtctgtttttttgtacagccagcatgctaagaaaggttttacatttttaaaaagaattgtaaaaaaaaaaaatgcgacagagaccatatgtggaacctaa
aaaaaaaaaaatgaactctctggcactttacagaaaaagtttgccaacccctgctttagacaatgaaatgtaaatggaagtggcatgtgtcaattttggg
caaaagctttaaaagacaaggattagttttctatgctctctgccatgacaaccaagaaagtttcagaaagaacctgcccaatcagtctggatcttacagt
gaagaaaacatggaatagagccataattgacccacaataaacatgtggcataagtaagaaataaacctttgttgtgggcatttAAAAGTTTCAGGATTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGTTTCAGGATTTGttacttcagaatagcctggtttaagctgcttgatatgtatcaatgtaatatgagttactacgcatgcctgaaaataataaa
agtgcatttatttaaagaatatttataattcagtcatcttaataattactcagaatatatttctttcttcttttttttttttttgaaatggggtctcgct
ctgtcgcccaggctagagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctg
ggactacaggcgcccgccaccacgcctggctaattttttgtatttttagtagagacagagtttcaccatgttagccaggatggtctcaatctcctgacct
tg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 421 101 NA intron:SYT14:NM:001146264:7/9
0 chr1 216852554 216852856 1000257 0 - Ya5ACA769; RIP_Alu_chr1_215_01 CCTGTCATTGATGAGTTTGAGG GCATTTAAAGACCGCAAAGG SINE Alu Ya5 tgcccaacaatataattgtctcaggaggcacaagtgactggaaaacacaagatcatacacagcacctccttcctaatcaaacactacagaatagtaagct
taagctcatataaacctttgcaaattttcaaaaaattctatactccatgatgctgactcaatacaatgttttcgtgactttgttttaaaaatgatagggt
atcagctttgtattaggtgaaatatacctgccaggtatatatgttaggtaaatacacctgtcattgatgagtttgaggaatgaaaaacacagatccttgc
taaacaatgtgaagagttctgtaactgagatatgaataggggattataagagtgaaagaagatagccaaagaaaattatctggAAGAAACAAAGCTTTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGAAACAAAGCTTTTGcctttgcggtctttaaatgccttgctccaaatactgtgtgttgcttgctgaaaaaaaaaaaaaaaaaaaaaaaaaatcag
tccaattcagtctttaccaagctattttcttttttttttctttaactatattgagtcagaccatgacacaccccactggccctatgctcaatgccttcct
gggtccatccactcacccatgtcccagaccaaactgtgccctggcacagaaacctgagtctttcaaccaacacttcatataacatgcaacattcacctag
gagtttagtaagaggggatcaccttagccagacaaccagaattgtggctgtgactggaaggaggaggagagaaacaggaagaggaaaaaggtggaggaga
tgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 484 164 NA intergenic
0 chr2 206439445 206439750 1000258 0 + Ya5499; 9131; pAlu2-206695121; RIP_Alu_chr2_206_01 TCCACCAATTTGAGCTGTCA GCTGAGCTGGACTTGGATGT SINE Alu Ya5 catctcttctgaatggtcagttcaattaccacactgatggttaaatgtttttaccaacacccctgggattataaagattaggagggagaaatatgccaac
agtactggaaatggtcatgccacccgtcctgtcattgttaaaaaatcattttgcctttgattctgggaagcacacgcctgggaatactccccaggcctct
cacttgaccccaatagaactgtcccttttatgccaccaaatgagcttcgtgattagtcatgcctgtttcagctggctaagtgcccaagcagtgcctgagg
ctggtccaagtgtttcttccaccaatttgagctgtcaaatccactcattttcctaggttagtagtggcagtacagtcatcctcAAAAGAGACATTTCCTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAGACATTTCCTGagggccaaggctcacgtgttccctagaatcacatccaagtccagctcagcctggtgtgatgtaggctggaaccatga
ttaggaattcagagaagcaaatccagctgctccacacttggaccattccactcctgacgcttgttccaagttatagctgacaggctgcctatgttttcct
aggttccccatccacagatttagataagagagaggtgttcttgctgtagtcattgactttataatttgggagttttcatataattgggggtttaggtttt
tttcatggttcaagctggtcccatattttacatccctctctctccctattagggctcaggatgctgaattgtgattttgcatttgcacatttgtatcctc
cactgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 456 133 NA intergenic
0 chr2 208275470 208275775 1000259 0 - Ya5ACA784; RIP_Alu_chr2_208_01 GAAAGTCCCTCAGGAAACCC GGGCATACCTTGCTTCAAAA SINE Alu Ya5 cactgcaacctctacctcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggacaacaggcatgtgacaccacgccaggctaatttttt
ggtatttttttgtagagacagggtttcaccatattggtcaggctggtcttgtactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgg
gattacaggaatgagccacggcacgggcctatcattgctacatttaactagcaattaccatgtgaatgtgtactgggtattgctttacatgattaactaa
tacccacaaaaatcccaggatatgtaatatgaaagtccctcaggaaaccctccaccaagaccaaagacctgcctaactccatcacataagaatttccctT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAATggatggaatgagcagactgtgtgctatggcctgtttttgaagcaaggtatgcccaggtctgggtgcccttccccagaagtatcaggggaggag
tctgcaacatctgtaaactctgcttagtcctcttttgggtagaaatcatactcttctggcattttatgtttctataaaagaatagggagaaacctgcccc
tcagagttctcagtgaggtagaagggccacaattaggtagcaattatgattaggtatctatatagaggaaaggaacaaacagggtcagaaaaataaatat
tccctattgatatcctaacaaggccttgactgaaagcaaaacaaacacagaatgagcaatgcagcttctgaggctcaagacaatttggataattaattat
aattaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 431 115 NA intergenic
0 chr2 28207457 28207751 1000260 0 - Ya5ACA791; RIP_Alu_chr2_028_01 GGTATCCACTGATCGCTTAC AGTGATTCTCGGGTTTCAG SINE Alu Ya5 ctcccttatttacccatcctctccttttctgccccaacttatccctgctaaacactcactcgttcttctcctatgaactgtatcaataataataatattc
atggctattacttgctgagtgtttactgtagtgccaggcactgtgattaatgctttatgaacagtattaatataatcctgaaaacaacactaagaaatag
gtattattatgtctattttatgactgaggaaacaagctcagagaagttacattttgtgacagctggtgagtggcaggaaccaggtttaaactagatctgc
ttgactcagagcccttgccttatgccacgtcattctactgcctctggtatccactgatcgcttactaatatgggtcagtattttcaattAAAAAATAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATAATAataataataataataataataaaacactctttggggccaggcactgtggctcatgcctgtaatcctagcactttgggaggccgaagcgggcaga
tcacctgaggtcaggagttcgagaccagcttggccaacatggtgaaactctgtctctaatgaaaatacaaaaaattagctgggcgtggtggctggtgcct
gtagtcccaggtactcgggaggctgaaacccgagaatcacttgaacccagaaggtggaggttgcagtgagccgagattgcaccactgcactccagcctgg
atgacagagtgagactctgtctcaaaacaaacaaacaaacaaaaaacaaaaaacagaaacattctttgggaggccgaggcagcagaatcacttga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 598 230 NA intron:BRE:NM:199191:7/12
0 chr2 38924995 38925323 1000261 0 + pAlu2-39029100; Ya5ACA828; RIP_Alu_chr2_038_01 GTGAGAACAGAACAAAACAACACA CCAACTTGAATGCTACCTCCA SINE Alu Ya5 ggctattctttcagcccaatcattcttgttttatgtttcatttctctatgatttcctataagatttcatttgcataaagtgtattgtagctttttaaaaa
aaagatttaaaaacctatgattctataatcctgacttcctccaaccccttctctccattaaatgccaacactcttttcacattcaccgtttgtttgttta
ttgaatatttactgaatgcctattttggacaagggactatggtgacggtggtggtatggtatagaaaaataagtatactttcaaggagcttacaaactag
tgagaacagaacaaaacaacacactatactgtaagacagaaataaatgttattagaggcacaagaaaagtattctgtgacttctaatAAAGAAATGATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGATTAatttttaatagcagaaaataggaaatttcatggaggtagcattcaagttgggtgttaa
agaatgactagagaaggaagtgggaaaaagaaatacagatagtaatagtatggcatctttcagaaataacaagtagtctgagagtgctaaggttttatag
gtaggaaactaaagaaggaagggaacttaaatattggctggggtcagatgatatgggcctttagtgtccacaaagtgtgagtgatagggaaccaatgaaa
atttctaagaataggaggaatgtgaacaattctatgtttaaagataattctgagcctgggcaacatagtgagaccttgtctctactaaaaataaaaaaat
tagccaggcatggtggcacacatctgtag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 494 152 NA intron:DHX57:NM:198963:11/24
0 chr2 113913923 113914230 1000262 0 - Ya5ACA864; RIP_Alu_chr2_113_01 GCTGAGCCTTGGTGAAAAAG TCACTGAATTCCCCTCCATT SINE Alu Ya5 atatcttttaggtcatattcctttcaaagctttttaagagatgaaggcttatatttagagtactttaggaagctcaacatcacaaaaatatgaagtatag
aatgggagagacttagggcaatgaggaaaatcttaaaaccagtccaagcctgagacagaggccctgaacatgagtgtttcacagggcagtgatgtgaaaa
ctgaaaggaaagggtgaatgtaagaaatcttctaagagaagatttactagggctttttaaccatattatgaaaaaaaaaacactttaagacatagctcat
tcattcgaaggtttctaatacgttacagatttatgctgagccttggtgaaaaagtgaacaagatagtctctgccttcatagagcttagaaatATTAAGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTAAGGGaaggggggaatggaggggaattcagtgaataaggaggcaattatgtcacagggtgacatattcaataggagatgcacaaaatgc
tatggagaacctaagagggacatctagccagaggagtcacagtaaaaaagtacctattccaaggggctaaaacacttggcacctttgaagtaacattagt
tcattgtgcggggccaatttggcaggctggaaaggttggcaagatccagatgctacaggtccttgtaattcatgttaaggaatttggattttaacccata
gggatgccactgaaaggtgtgacgcagtcggattgacatttataaagatcattaaggctaacatgcaacgaataaattaaagggcagcaagactccagat
tagtcagg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 410 94 NA intron:CBWD2:NM:172003:1/15
0 chr2 55937047 55937347 1000263 0 - Ya5ACA877; RIP_Alu_chr2_055_01 AAGCCTCCCTGGAAAAGTGT TCCAAAGGATGTTTGCATGA SINE Alu Ya5 cgtaaacctcgttgttccaaacactcaaccaagatcctgactcctaataatgaatcatgtggtgaaaaatctcactccatccatcagtttatttacctaa
ccttttttctctctttccttactcctcttcataaacatggatacaatggctgtttaaacaccatatctacttttaaggaatatacagtttattggagaga
caaagtaatcaaataatcttacagacgaatgtaattttagaaattacatgttaatatactttgcacattgcaactgtgacacgtgctacaaaaaaaggaa
tgtggtgctacaggagcctataaggagaaactcaaatgacctactcaagcctccctggaaaagtgtctcttgaactgagatcttAAAGATGAGTAGGAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGATGAGTAGGAGTtaactacataaaataggtagggaaaaacattcagaaagggatctgctcatgcaaacatcctttggagggagggaacattttct
gggacccagtccaatcaaccaaaataccagtgtagctggagccacagataaggctggctacagtataatctataaagagtaaaaacacaactttaaagta
aagaagtagtaaagagcaaagtaaagagtaaagacacaactttagagtaaagaagttgtgtctttactcttatatcaatgggaaggtatttaaatatttt
aagcaggtaagtaacaatcagattcacactttggaaaaattccgtttagcctggagataggttggaagtgggctcagatggatgcaggttagaaagctat
t UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 437 120 NA intergenic
0 chr2 134176750 134177041 1000264 0 - pAlu2-134482500; Ya5ACA891; RIP_Alu_chr2_134_01 GCCAGACTCCCTCTCTGATG ATGGTTCCATCTTGTTTGGC SINE Alu Ya5 attctctgagcagacctgggctggtgcataaaccatggctctctcctcctcaccattttagttactgctaacttagaacacaccacctgtctctcacctt
cactgctgctgccacttctctgtttccattccagccccaaccattcactgtccacacaacaattaaaaagggatcattttccagtatgaatggaatcaca
tcccttccctgatcaaaagcctcccagggcttcccattacttttaagaacaaaatccatatgagttatttaaggcctgcctgacttggccccatacgcct
cttctccttctgtttccacgttctgccagactccctctctgatgcacacaggccccctcccaccttcctcctccagagatagcttAGAAAAAGAGACGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAGAAAAAG
AGACGAGtgaggagaacgttaagcaaggtgagaactatccttcataccatgaaaataagcttatggtaagccaaacaagatggaaccatggatttaaagc
tttgtggatcatgatctgcagtaagcaaatgcagtttacacacacatacacacacacagccaaaaagagtcatttcattaaacaatgtaatatggtctta
tgtggtatatactctgatattttcttatataagtaatatagtaatatattacttatatataaaatatgttatacatgaaatatatataaatataaaaaat
atataacatattttatataacgtatataatatatataagtaatatatatattacttatacagtaatataaaaatactgacttttccatgcta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 465 158 NA intergenic
0 chr2 41796104 41796419 1000265 0 + Ya5ACA912; RIP_Alu_chr2_041_01 CCATGTCAGTAGCTTTCACG GCCTGACAAAGATGAAACTG SINE Alu Ya5 taaacatcagcactaaaaatacaagtagttacaagaagtggcctccaggaaccagaactgagggaagaagctacacgggactggagccagttgcttttct
cagaaacccttctgtaatatttgaatcattatcttaagcatacctttctttgcaaatttaaaaagattaaaatgtcataaatgtagaaagcaaataaggc
cataaaggtaaaaataataataataataattgtgatgagagggcaggagacggggtgggagggaatatggctgtgatggacatcatccacgtgcaggaca
gaatcacagaggccaccctgtaggtcagcctggcagcattcagcgtccttgtgggctggcccatgtcagtagctttcacgaacaaaacacAGTCACCCAG
GCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTGTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGTAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTCAAAAAAAAAAAAAAAAAAAA
AAAACCACACACACAGAGTCACCCAGtctcatttcagtttcagtttcatctttgtcaggcccagccttggtctccagtcctgactcttataatgaccttt
ctctccaccccacggcccaatagtcacatcttccacattgtcctagaaatcatgtcatttccaatttctagaaggtccttggcatccaaagcaattctgg
ggtcctgagtcaacatcttcctcctataacctctttctctttttcctgtttttccaaaaggaaaccaatgctcctaaaagtattttcttaagcaagctct
cagttgcagagagctctgagtccctaacatttggaccttttactgttttctcacatgttaaacactgtatcccaatgtctaaaatagtaagaaggtcaat
ccacacagaaaatgca UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 400 74 NA intergenic
0 chr2 161503857 161504170 1000266 0 - pAlu2-161759537; 8756; Ya5ACA914; RIP_Alu_chr2_161_01 AGCATTGCATTTTTGGAAGG TACATTCTTGTTGCTGGGCA SINE Alu Ya5 attcacccaacaattcgccaagggctacctgcattgtcattgcatactataagtcagactgaaagcagggaaggcaggtgaagctctgccttccccactc
atctcctggatgggtagagcaatgatgtgccacacctcatttcctgttatccccacttcagggcccccggcctatcacaactgcaaaccccaaacttctc
tctatagataatatactactagaaaaatgtctactgtccccttacaatctagtaaattaaaatatattccctgtccctttagcattgcatttttggaagg
cttctcacttcaaatttggaaaataacaaggaaatgtcaatagtctttaaaaagtctccaaaagtacttcttgtagcgtcagcctctcttAAGAATCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAATCTTCtacttgttctctgcacttttagaggcatgcccagcaacaagaatgtaacgattgcattttaacacttcattcattt
tgctttctaaaagaagattaaatgaaggatattaagtcccctccacatgctaagaattctgaggagtaacttcaggatgaaaacatatatgatcctgctc
ttcttccctaggtatccagatgttgaacttggactgtgtaagtctcttccagatatagtttggatatctgtccccactaagtctcatgttgaaatgtagt
ccccaatgttggagtcacagcctaatgggaggtgtttggatcatgggggtggatccctcatgaatggtttgggccatccccttggtgatgagtgaggtgt
cactctgagttcac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 491 167 NA intergenic
0 chr2 169103724 169104020 1000267 0 - pAlu2-169359396; 238889; Ya5ACA921; RIP_Alu_chr2_169_01 GAAGTTAATGAGGGTGCCCA ACTGAGCAGAGTGTATGACCG SINE Alu Ya5 gactgattttgaaagctaatatgcaggtgcatgtttagacatatacatgtgcatgtgcctgagtgagcaggcatatgtgcatgactgtatattgttaaat
cctacctaagacaaaactgtttcaagaaaacaaatatttagtggaatgaaggccaggatggagaaaggggactgctatttattgacagatactatatgcc
aaaagctttgcaatgtttaattcttttttagatcaacaataaccctttcaattaaatatttatttcatttaacagaaatataaactaaagctcaaagaag
ttaatgagggtgcccaaggtcttaaaggtagttaaatagcttagacaaaatttagatccgatcaatcataacataatctattaatAAAAACAATATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AACAATATTTTCcacactccctaaaataagaaaagtaaattaaagaggtattgttaaaatacttgtgatacggtcatacactctgctcagtaatcccact
tttaggtatttatctaagacaatctgtcagacaaagaagaaaggccacagatgtaaagattttcacgcacaattatctgcagagggaaaatggcaaatag
cttaatgagtcactacaaaatgactcagtgagcatctattatgtatcagccctgctctaggtgttggggatgctgcagtgaacaaaatcccatttttatg
gagcttacattctagcagagggagattaaaaataaaccaagcagtgtatgctatgccagatggtgagaagtgctagagagaaaaatacagcctgcta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 495 183 NA intron:LASS6:NM:203463:1/10
0 chr2 165975770 165976078 1000268 0 + Ya5ACA923; 10935; RIP_Alu_chr2_166_01 TGAGGCTACTACCCCTTCAA TGGCTGTTCAGAACTTTCAC SINE Alu Ya5 tcaattaacttataaataataatgaattaagtttcctatttcagccacagttattctctattagctgaaatgctccttctctcgcgctctctctctctct
ctctctctctctctctgtctctctgtctttccctctcttattagatttctacatataacttttcctgtttcagagggaattaattttttttcccagtata
catcccttctttggagaaggaagattgtttaagattggctttattgactctactgcactagagacaaaacagaaataagtaggcaaaggtatttatgtgg
aaatgttttaaccattagtattaggtgaaagttctttatagcttttagaatattgtcctgaggctactaccccttcaaggggcttaAAAGCTCCAGACCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGCTCCAGACCCagcttttagtgaaagttctgaacagccaagttggaaagttatttttttaagctgaaagtaaaaggtagaaaaatgga
tagtataatagaactagaatattttcacttcttatttcaggggttgttttttacctgattaccctaattgatcttataaaaatgtgactatagtttgtgt
tgttgtattattatttttgtaataattataataatattttttgaagatctgaacttcaatatttgataatacaataataacatttgaatagctcatctct
atagagtaattcattacttcaaagtacaaaatcggaggaagctgcatggcatattgaaactcctgtgtttatctgcactaatcacttcctggtaccattg
tgctcaatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 393 70 NA intergenic
0 chr2 183958227 183958554 1000269 0 - pAlu2-184213921; 5056; Ya5ACA937; RIP_Alu_chr2_184_01 TACTCGTGCAGCAAAATCCA ACAGCGGAGTGAACGTATCC SINE Alu Ya5 catgttggtcaggctggtctcaaactcccaacctcagtactgcttcattaccactcccaatcacaaattctactgatggttaatttgtaggctgagatca
caaatcatcatgaaacacaggtggtattctagagtttccttgtgatacaactctgttgagtaggcttcaattctgttgtacttgcaacatttgaaaacta
aatggtaagatgacttgcaagtagctgttgaataatgaatgatgtggtatagccacaaggatacagtaattaatatttaagagtgacaggctcacctccc
tgggaatggagcagaaagtccagcacaatgagtggctatataaaaagattactcgtgcagcaaaatccagaagctaaactctagtAAAAATCCATAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCATAAACAactgattcgtcaaataattaatttccttcctttatttagtgtacaaagtatttttgg
gtctacagtgttttgaaaagggatacgttcactccgctgtttttgtatgagacccacttctacacattttcttgctacttgtaagtagtaagtacaaccc
ctcccaaatgttggggtagcatcactaatctgattagtagagagggttcagatgactgaggggtcactaatctgatgagtcagggcccagaacatgcact
gggtcatggtttgctagaggttgaggttattgggccttcaagtcagcactctgaaggatggctgtctcttctattttctgtcccaaactttttcacacct
cctctacatccccaactgtgtcatcagt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 124719448 124719751 1000270 0 + pAlu3-124517886; Ya5ACA1011; RIP_Alu_chr3_124_01 CGGTCCCTGACCATAGATGT AAGCAGTCAGTGTGCAGCTC SINE Alu Ya5 agtcctttaactccagcaatgatagcccagagaacaatattctcagcaattggtgactgtggccccaagaaaagagctggggcctactcaacccacagtc
cgcccccaaatctccaaatgcagtatcccaatgtgcccacccaacactccagaggggagaagatttaccactgacagaaaggtaactgaaatgtcaaaag
aacatgaaactggcaatatattttgtgaaatgtcatggttctttctgttctatgacagtgtaataattgcaaaaatttcaaaaggtggggaaaaaaagct
atgaacaccatctcttggaccagaaatatcaaaatggtgacctacggtccctgaccatagatgttctgtttgggcttgtacagtgctttAAAAATATTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATATTTGaatcagtttttaaaaattaggggatttctcattttaaaaatctagatttctgccttttctcaaaaaaattagattttgcactact
gaatctgtctggcaatctctagctgagctgcacactgactgcttgtgtgagatggcatgcaccctccagtcaccatgcttttcttccatgttcttttaaa
atcctgtgggacagacctctgccgccagtagatagcctctgctacagattgtaaagtgctacacaaatgtcatgcaacatatttgaaaactctaaagttt
taaaaactttagttatttaaaagtgttatttaaaagtctgattagtttttacacttgaggctctgaacatacttttctttaaggcaatgaccttggccaa
agat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 500 185 NA intron:PTPLB:NM:198402:4/7
0 chr3 23061856 23062138 1000271 0 - Ya5ACA1052; RIP_Alu_chr3_023_01 TTTCTTCAGGAGCTCTTTTG CTCAGCAGAAACCCTACAAG SINE Alu Ya5 ctgagtcttggttctttatccagcttgccactctgtgtcttttaattgggccatactatgccccaatactatgcccttttagttggggtatagtattgtt
atgtacgaatttgatcctgttatcatgatgctagctgattactttgcagagttgtttatgtagatgctttatagtgtcactgctctgtgtacttcagtgt
gttttgtaatgaccagtaacagtttttcctttccatatttagtgctttcttcaggagctcttgtgaggcaggcctggtggtaacaaattccctcagcatt
tgcttatctgaaaaggatcttatttttccttcgtttatgaagcatagtttggctggatatgaaattctgagctggaaattctttcctttAAGAATGTTGA
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAG
CCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC
CCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGTTGAatattg
gcccccaatctcttctggcttgtagggtttctgctgagaggtctgctgttagtctgatgggtgtccctttgtaggtgacctagcctttctctctggctgc
ccttaacagttttttctttcatttcagctttggagaatctgataattatgtgtcttgaggatgatcttctcatggagtatcttactggggttctttgcat
ttcctgaatttgaattttggcctgtctagccaggttggggaagttctcatggatgacatcttgaaatatgttttccaaattggttccattctcccttctc
ttttagctaccccaatcagttgtagatttggtctttttacttaatcccatatttttcagaggttttgttccttcatttttctt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 493 199 NA intergenic
0 chr3 126972106 126972403 1000272 0 + Ya5ACA1063; RIP_Alu_chr3_126_01 CCCTTTATGAGCAATGCGAT CTATGCCCAGCATTTTTCA SINE Alu Ya5 aacacttggggtcagaccattcgtggtggtggtgggaggggcgtcctgtgtattgtaggatggttagcagcatctctggtctccatcctctaggtgccat
cctaccctcccagctatggctaccccagatgtctccagatgctttcaaatgctgtgggacaagggagtggtacatgagcaaaaccaccccagttgagagc
cattggtctacacttgtggaaatgtttgagggtgagagtgtcgagctcgggtccctgctgtaccctttatgagcaatgcgatcttggaaaattaatacga
ctccaggggccttagttttctcatctataaaatggagataaatgagatacactttcataggaaggttatatgggatttactgagataatAAGACAGTACA
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GACAGTACAtgaaaaatgctgggcatagcatttatttatttttatgttttttaaagacctaatcttactctgttgcccaggctggggtgcagtggcatga
tctccgctcactgcaacctccacctcctgggctcaagtgattctcctgcctcagcctcccgagtaggtgggattacaggtgcccaccaacacacctggct
aatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctaaggtgatcctcctgccccggcctcccaaggt
gctgagatcacaggtgtgagccaccacgctgggctgggcatagcattgtaacacagacaaagcacaaaatacttgggcaatatctttttacatttggc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 466 157 NA intergenic
0 chr3 49469292 49469609 1000273 0 - pAlu3-49348609; 22534; Ya5ACA1134; RIP_Alu_chr3_049_01 TCCACCTACCCAAGTTTTGC GACAGCGCTCAGTGATGGTA SINE Alu Ya5 tgctggagacctgtagctttctggaaagaccttccacagagtcccattggcaattttgagcccaaattccacaagcccacacactttcaaggacatgcaa
ggatgtccagcctcctgcaggataaattaagccccaccctcaccctaccctaagcaacagggacctccatgtgagaaggccacatggaggaggagttggt
caagacttaccagtctcctcctctctcctcgacccccatagatactctcacttgtgaaggttcctcttccacctacccaagttttgcccaccccactcaa
gaacaacacccccaagccttcctgacatctgactcctcattgtctaggaaacctcaagcttctagagggcaatgattgcccttgataatAAGTTACCATC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGTTACCATCactgagcgctgtcctatatctttggcacacgatatctcaccatgccttccagcaaccctctgtcacagtta
ttattggccccacgttacagatgagaaaactgaggcccaaaggttaagtcacttactaaaagtcccatagccagtaagtggccaagctatggatctgtgc
ttatctttgtaacctttactgggcctggcccagaataagaattccactaatgcttgctgaatgagtcaatgaatggatacaattccatcaaaactatagc
taccaggacctatccaaccctagggcccaggacacagaggccttggagccatgtaaggggcttccagaccagtccaggaagaacaaggctaggtttctgt
ccctctcccaccttgggc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 475 146 NA intergenic
0 chr4 184540698 184541003 1000274 0 - Ya5ACA1172; pAlu4-184888050; RIP_Alu_chr4_184_01 CTCTCCACCAACAAAGAATC TGCTAGGATTATAGGCATGAG SINE Alu Ya5 caaccaaatggctttctgtttgtctttcatgatgaaattccagaatggtttccctaaggaatgaaacgtgaccaataaactcccagaatctcaaaaaaca
ccagtaaaaagccaccttccctgctgtcctcagcatttgacacatacgtggccagtgtgtgtcctcacaagcctttcctttgccctccatcctctgattc
tgctggaggaagtaccaagtgctttggagccatggcttcataaccagggtccagttgctccctctccaccaacaaagaatcttaatctttcttttttttt
tctgtgttgtacattttttattggtatggataacttattaaagtaacaaatctgaaaacacattttgcttttgctggtggtggAAAGAAAGTGCTATGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAGTGCTATGTTaggccgggtgtggtggctcatgcctataatcctagcagtttgggaggcggagtcatatggatcatgaggtgaggagt
ttgagaccagcctggccaagatggtggaaccccgtctctgctaaaaatacaaaaattagtcagccatggtgatgggtgcctgtaatcccagctacccggg
aggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcgcaccactgcactctagcctgggcgacagagcaagactcca
tctcaaaaaaaaaataaaaaaattaaaaaaaaaaagtgctgtgttagagaggatctaagagaaaccagaagtcatttgcaaaaaataggcatatgatata
gtctgg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 499 176 NA intergenic
0 chr4 95717996 95718303 1000275 0 - Ya5ACA1197; pAlu4-95891648; RIP_Alu_chr4_095_01 TCCATAACCTGTTTGCTTTTACC TGCAAGCCACACAGAAGACT SINE Alu Ya5 tttattttcagagtaatcaagtttttattgtcctaatatctagacacttgaaatcaagctatttttaaatacacccagtttgcaaatgcaaagcagtaac
ttgcctgaaaatgatgcaaaatatgtagtaatctcttttctcctgaattttgcacagtgctggacagcaggcatgtgcttaataaacactgccaattgat
taagaagccatcataaaggctctataatactgcctagtttcagtttaaaaataataagctttaaatcatttcaagttttatcaccaaagctgtgcttata
aaacacaaaacttaagcttggtattttcagatgttttaaatgcagtacttttccataacctgtttgcttttacctctacaactttctattaaGAAGAGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAGAGTTttttatgagatttcaagaagcactagtagaaaagattttagttaagacacttccttcaatggatgtttttctactgaacttgga
atttaataaacatggtaaacttctgttttagtcttctgtgtggcttgcatttgacagacagcatctttctttgcaggatatctactctgattactcgaaa
atctattgtcttaaaataaacatactaaaaaaaaaaaaaaaaaaaaaagattacgaccaaacactcctgaacactccatactgtttctcttcctcacatg
aaagaaacaataacattcttttttgaaggatactagttttcctcaatatatatatatatatatcagaactttagaaagccacccacaacctcaagaccgt
atgtacag UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 498 182 NA intron:PDLIM5:NM:001011515:5/9
0 chr4 100289328 100289627 1000276 0 - pAlu4-100462978; 12480; Ya5ACA1202; RIP_Alu_chr4_100_01 ATCAGCTTTGCCTAAACCTA GAACCTTTTCTTGGGGTCT SINE Alu Ya5 ggcaagcatgaaaagtgaaagtagtgaagcgcttgcccagccatacaaggccagcatagagctgcagtaaaagcaaaggcatcaagctggaaaatgatga
gaactatagcttttccatacctggcaaaggggatcaggtggattaatccaaagcacacaatggcaaagatcttgcaaggctacttccatttttattatac
cccagggactctaacctcatgtgcctagtctctaacctgaatatcagctttgcctaaacctaatagaggacaccaagatggacccaacttaccagagggg
ccaatgagtgttgtgcagactgaatttccttggcattaggtaacatcttaaggtccttttatagtgtccccagaagatgatgctAGAAAGGGGTCTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAAGGGGTCTTTTCaagatccagaccccaagaaaaggttcttggatctcacccaggaaggaattcaaggtgagtctcagatttctgtgagaagagata
gtttactgaaagccactctgtcacccagtaaagcatcctcaaaatgaaagcagaggaatgcactgtctttaagtttttcttatataggggtcttgcctat
gtaaagattaaactaagctgtgcctatgtgcaggtgggctgacagcatgactaaatgtattattctactgatttaaagaaaactatccttgatatcttaa
tgtgtaagtccatcgaagcataactatatcttgaaagcatatattgttataggtgttgtaacatctggacttttctgttgtaggactttgtccttgcagg
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 111602671 111602981 1000277 0 - pAlu4-111776324; Ya5ACA1217; RIP_Alu_chr4_111_01 TTTGCCATTTTCTTGTTTGA TTTCACCTGGTTCTTTTTGA SINE Alu Ya5 catctactcaaagaacccacagatttcatcacgagtatgaattttctcctgagagtcaaggtcaaaactatgcctacctgtgtccacttgcatattccac
caacaattcagttggtctaaagctaaagagtatcactccccacagaaacactgtagctctgcactccttaccatgtttcatttctccatcagcattacaa
tcattttcctcagtatcaaccaagaccttccctctctctcacagacggctagatatattataggtgcttgtcaatttgtagcttctctttctcatctctt
ggcactttgtataggttattttgtatagctttaatttgccattttcttgtttgaattttaaaaatccagagcagcaccgattaatAAGAGATAGTGTGAG
TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAGATAGTGTGAGccatagccatatgtgtaaatataaactttcttagtagccacattaaaaattcaaaaagaaccaggtgaaaataa
ttttaatattatggtttatttaacccaatttatctgtctgaaatattattgtttcgtgtgctcaaaataaaaatatgtacttaatataaaagttaataat
gtattttacatttgttggataacatcaaaacctagcatgttttatgcttataccacatctcacttaggactaaccatttcaagtgttcaatacgcacatg
tggccagtcgctgccctagtgaacagcacggctctagagctttaagactatcttatgcttgcttgtgttcatgacattttgtacaatgtgtagcacaaaa
atgtgtttggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 462 136 NA intergenic
0 chr4 117470937 117471246 1000278 0 - Ya5ACA1233; Ya5-MLS47; RIP_Alu_chr4_117_01 CACACACTATCATACCCGAAT AGCAGTTCAGAACCATCCTA SINE Alu Ya5 atcatacatttcctttttcaccatttttccaatattctacctaatatcttgtacatgtgctactactatgcaagttccatctgctactcgtcaatttgtt
gtagttgagattctaagttgcctccttaacatgaatattgcctttttactttgccattatcagttcttcagaatggagagtgttattctatatttataaa
ctatgggttattaatttttaattttttaacttttatgttggagagacctttctccgttgccaagactgagtacaatggcacgatcatagatgactgtaac
tttgagcttctgggatcaactgattctcctgcctcagcttcctgagtagctaggactacaagcacacactatcatacccgaataagcttttaAAAATTTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATTTTgtagcgataggggcttattacctaggatggttctgaactgctggcttcaagtgatcctctcaacttggtttcccaaagtact
gcaattacagggttgagtcaccatgttaagtctatgtttatttgtaatatttgatattatcaaattactggatatttataatacatatgtaatttcaaac
tgtagtaataaaatgaatacctgagtacataccacttaatttaagatcttatcattttaatatctcatcaaaatagtacaaaatactgtagagaaatgaa
agcataatggttttatcaatttttgtttctataaaaaattaccttgactgggtaattgataaacaatataaatttattgctcacagccctggaggctgag
aagttcaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR NA 60 398 80 NA intergenic
0 chr4 120236701 120237003 1000279 0 + Ya5ACA1242; RIP_Alu_chr4_120_01 GCGAGGGCCTTATAAAAGATG ATTGGGTTTCACATCCGTGT SINE Alu Ya5 ccgaacaaaactgtctgctttctacatgttttccacagtacccctacttgcttctacctaacattcaacatcttgtaatttcttatttgctaatccattt
cccctagtagactgtctatgaaaggaggcatgtagttcttaacccaactggaattttagtatacatttgttgaattaacagatgaaggaaaagcatacgc
tttactattaactatcctcactataaactaatatatgtcattgcctttgcggctaacctcagatgtcacaaacctacaatgctaaatctgtcatactaag
gatcctctgtgcttttgttaagtttatccaggctatggttaacttcagaattctctcctttccagtgactgcgagggccttatAAAAGATGCTGCAATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGATGCTGCAATGAatttctttctttatttcatttgcttgcttattattcttattccttctacataaaacgaacaaacaaaacaaaacaaaagc
acaagctctggtggcaaatagacacggatgtgaaacccaatttcaccactgctagctttatgatcgtgaaaaattagtcttttagtttcagtttcttacc
tataatacttacatccatatcataggattgtcaaagaattaactggtacatatcaaggcctcctggtacatagtaggatgttggtaaatatgaaacctat
taaatctcttttttctcttacccctttctcataactcccattattacagcctcaaaatgcttaccacctgattattcagtacacgagctgcttctcatat
ttt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 471 151 NA intergenic
0 chr5 13948093 13948379 1000280 0 + pAlu5-13927730; Ya5513; RIP_Alu_chr5_013_01 TGGCAGGTAGAGTAGCCAAAA GGCTGTGTAGGAGGTGAGACA SINE Alu Ya5 tattcaacagatgttaggaactcagcctttagaattcagaaatactaattattcaggcagacttactgatctttgcaaaagtgttttctaaataagcctc
aatattcagtgatgtccaggtcagtgcagccaagccaggttggagagcttcatccactttggccaagtgagggacaatcaattgctcaatggcagcaggt
atttttgacttcactctctgatattcagctagcatcatctgcaatgaaattggggttaagtaatcaattaatatctcacttctaatgtctgttaatatct
catgtcttatacaaaatgactacttttatttagggtcaaactgtagggctctaatagcctggcaggtagagtagccaaaacaataaaaagAAAAGAAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAGACaag
gactctctccataattacaaattcctaatccaaaaaaatacaactgaagatgaacaagaatttaagactaacagtgtctcacctcctacacagcctaaaa
agggagaaaatctaaggccaagtaatttttctaaaccatgcagaaacacgggaatggcaccttcacctgctcatcaccaggcttgtttgttcctctttgt
acactgatacgacatgcgtgctgctcctctggggacctcttgtagactacacccatcacccaaaacatgtgggtcgccagaggtctacctcagccctttg
ctaggattataggccaaatcttgttgccaagacccaaagcacaccgggaaccagtattgatctcaactagtgtcacggctttgaatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 58 436 139 NA intron:DNAH5:NM:001369:15/79
0 chr5 65381805 65382128 1000281 0 - Ya5ACA1292; pAlu5-65316484; RIP_Alu_chr5_065_01 AACCAATGCTGGGGTTATTAAG TGCCCAGTTGAGTTCAGAAA SINE Alu Ya5 tatgagtttgtttcactggagagcagagtgaggtgtcttgactactatcagtattaagagaaactgaatcagacatccgagatggagaagaacaattgct
gttattctgattgctattgtgtgtaacttcatctgataaagaatctgtttcctttgtatcatctgaaacaaaacaaatttaagattaatgataaattccc
caagaattgtgtgaaattcttttcagtgatgacaaatggcaattataccatcctggttctatatatgaggtaataaattatattgataattggaagcacc
cctgaaaattcagtcctaatacaaagattaaataatttttagatggtgatataatttttcaaaaagtaaccaatgctggggttattaagaattcGATTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATTCGATTTAgttactgacaaggtgatattattatgtactgttttctaaggtcagttaatttcaatgaatatacttttca
cccatttacaatttgaaaaactgataatgaaaattcatttacaacctttctgaactcaactgggcaagaaattatttcatacatatatggaattttttcc
catctactctaataaaaataagcaattcaatccacaaacatataatcaccaaacaaatcaaggaattttcaaaggtcagctctttcttaatgtttttaaa
acatttcataaacttgtttatgaatggtaaactctcagtatgtaaggtggttgtgtgtgtagcaattacatgaacagaaacagacaagtgttcatattct
ataataggtagtataacaagtagt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 499 169 NA intron:ERBB2IP:NM:018695:19/25
0 chr5 78128461 78128756 1000282 0 - Ya5ACA1335; RIP_Alu_chr5_078_01 GGCATGGAAACTAGAGGAAC AAGTGATTCTCCTGCCTCAG SINE Alu Ya5 aggttgaacctgttttgatggccaaggccagcagatggatgtcaatatccctatgtgaaatacaggagtggagcaccatcgaaggaatgatgtgagaagg
aagtgagaaggctgggctttgttactgtgcaggttcacctgggctagaggcactatggttggatacacaaaacaacagtctgggttagagataagattct
ggagtctagaatacccagcgaaatgttgggcatggaaactagaggaacgaaaacattgaagagatgaacagtgaaaaaagaataagcaaatgaggctgaa
aagaatggcaggtagaggccgggcgcagtggctcgtgcctgtaatcccggcactttcggagaccaaggcaggcggatcacaaggtcAAGAGATCGAGACC
TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCAGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAGA
GATCGAGACCatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcgtgtgcctgtagtcccagctactcg
ggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagattgtgccaccgcactccagcctggtgacagagtgagactcc
gtcaaaaaaaaaagaatggcaggtagaaatgagactcccaaagatgaacccagatggagcattttctctatgccaggcactgcagtaagtgctttgcacg
cattgtctcacttagagactgaaaaggggaaggacaccttagaaagaagaaaatttcaaaaagagagaccctccttctgccttgatcatatttgtc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 597 287 NA intron:ARSB:NM:000046:6/8
0 chr5 73684753 73685059 1000283 0 - pAlu5-73687606; 240; Ya5ACA1339; RIP_Alu_chr5_073_01 CAGCCACAACAAAGCAAGAA TATTTATGCAGGGCCTTGGT SINE Alu Ya5 tcaatgtaatacaatgtataattagatgtttgcttgtttcagtcttccccattgcatttcagccaccacacagtcaggggccatatgtctgcttcattca
cttttatattcacagacatgcacaatgcctggagcctaagaggtgctcagtaaatacttgctgaatgaatgagtgacctttgaggaaagcctcattagca
aatatatttcttggccagttgaatccaagctcttgttttatattccagaaagaaaacctgcagattccattgatctggcatggagctggatgtctttcag
gatgaagagttttcattaaaacacagccacaacaaagcaagaaaaaagagcaattgatgtaagcatgccagtcaggttcacatgttaagAAACAGAATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACAAA
AAAAAAAAAACAGAATAAaaagaaataaaaattgataaacaattgtaaatcataccaaggccctgcataaatatgacttgctattatgcataatacaata
catggcatttttgtcttggaacctgtccaatgtggtttattattggaagaattgggtgaatcttgttaaaacacagctttacctgaaatttgatccctag
gtgtgaacccagaggacaatcttatggggattttccaattatggttttaagtaaggagttgtggaattctcatttcatcctcttcaaaatttcttgcttt
aaatgaatgagtagactgaattattctccttttaaaaaacaattgttttgcttggtgaagaccagaagaatcatgccagttctaatgcaggagagaaata
catttta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 450 132 NA intergenic
0 chr5 53212699 53212990 1000284 0 + Ya5ACA1360; RIP_Alu_chr5_053_01 GCAAACTGGCCAGAAATCAT ACAGAAGATGGTGGTGGAGG SINE Alu Ya5 ctgcttaataaaagtgttgggttgatacactgcatgtctagaaagttgtaaaacaactggagaaggtccagagacaaacctgacttgctccagattacag
agaatgacagctagacttactgtttgcattcttgtctctgccttttggtgagccgtttccattctaacaaaatcttctcatttttaatatttatatgtct
aatgatttaatatcataccacatcactctggccttcaaggtgccctggacacacatttttctgatttacctttacacagattatacgcaaactggccaga
aatcattcatttcaacatgaacctctcaggtaagaattgtggtcttacttctctctccagaaacagctttcttcacagactctgtttAAAACCAGCTCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACCAG
CTCCCtccaccaccatcttctgtaagcttgtccagacatggggtacatcattaggccaggtcttccagtcattcccttgcttgcaaagcaatcatttata
ggcgtttggtgctttgtctgacatctgtttgatgctggaactctagcctttgtctcaatgaatcacttgtcggtgaaagtccattgtaggctggatttca
cactttcaggaggggtttgcctgtgatggaagtgatcttaggctttttgaaataaccagctccctccgcctccctatattccatgaagaaacaggaaaat
gagagagtctggggaacctggtgcttattcaagcctcattttgatttgttcccttgggcctgagccaggttagcatctctggggactacatt UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 437 132 NA intergenic
0 chr5 164298891 164299186 1000285 0 - pAlu5-164301750; 3812; Ya5ACA1436; RIP_Alu_chr5_164_01 GCATGGAATCAGGACAAGTA TCACATGGTGAAAGGTGCTA SINE Alu Ya5 atagatttgaagcttgaagacatctttgtttctctgtacatatgtataattacttgaaaaaatatttagtttttatcttaaccaaagcccattatctagt
tggtagttatcttgtttgctctagatgtattacctgagtggcatggaatcaggacaagtatgtaatttgtagagccccctgttcaaaaataattaggaat
ctcaagacagtaacagtagagcattaaaccaagtgtggggtttgttatggtctgaatgttcgtgtcccctgccagactcatatattaaaatcttaccctg
ccaggtgatagtattaggaggtgggacttttggggaggtaattaggtcatgatggtagagccctcatgattgggattagtgttcttAAAAAGACCTTAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGACCTTAGAgagttagctagcacctttcaccatgtgaagacatagcaagaaagcactatctatgaaccagaaagcaggcccccatcagacagtgaatct
gctggtgccttgaacttggacttcccagcctccagaactgtgagaaataaatgtttgttgtgtataagacactcaacttgtggtattttgttacaatggc
ccgaacgcactaagactgggtccttttgagcataaggcccttcacaggatttgtgcccatgaatccagtactgtatggaattcattctaccaacaccatt
gctccttttcagcctgtattgaagttcctctctttattgatctctttatgttgaggtgcctaggaccacaggccttaccctctgttctattcacac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 598 288 NA intergenic
0 chr6 108372815 108373108 1000286 0 + pAlu6-108266151; Ya5NBC54; 31139; RIP_Alu_chr6_108_01 GTTTATGTCAGTAGGAGTTTTCTCGTGTAG TCATTGTATCATCTGCTGTACCTGT SINE Alu Ya5 tgaaacccgtctgtactaaaaatacaaaaattagctgcaggtggtggtgtatgcctgtaatcccaagtactcaggaggctgaggcaggagaatcacttaa
acccgggaagtggcggttgcagtgagccgcgatcacaccactgcattccaacctagatcagagtaaaactcttgtctccaaaataaaaataaaaataaaa
ataaagaagtctagcctggaaatagaaattttggagtctgtgcattagtctaatcctaagcctgtcaccccacctgggttacaaattctaccaaaataag
actatgtttatactgcattcatcattgtatcatctgctgtacctgtacggtcaaacagtgaacgcttaatcagtaactactaaaactaaacAAAAATCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGAACCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAT
CTAaagcaaaaaaagagttggaatctacacgagaaaactcctactgacataaacagaattccaaaatgtaaagaatatctttcttttctttttttttttt
ttgttttgagacagagtctcactctgtcgcccaggctggagtgcaatggtgcgatcttggctcactgcaacctccacctcccgggttcaatcaattctcc
tgcctcagcctcccgagcagctgggactaaaggtgcacaccactacgcccagctaatttttgtatttttagtagagagggggctcactatgttggccagg
atggtctcgatctcttgacctcgtgatccacccccctcggcctcccaaagtgctgggattacaggcgtgagccaccgagcccagccgagaacat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA 433 139 NA intron:SEC63:NM:007214:1/21
0 chr6 62111954 62112258 1000287 0 - Ya5NBC171; RIP_Alu_chr6_062_01 TCTAGAATTACAAGTGCAAGCCATC CTTCTCATCCCTGCTAACATAACAT SINE Alu Ya5 ctctcttgttgggggctaataacgcagctggtgaccttaagtggaagccaatgctcatttaccattctaaaaatcctaggggccttaagaattatgctaa
atccactctacaaatgctctatgaatggaactacaaagactggatgacaaaacatctgttgacagcatggtttgctgaatattttaagcccaatgttgat
acatactgatcagaaaaaaattttttttcaaagtgttactgctcattggcaatgcatctgttcacctaagagcgctgtttgagatacacaaggagattaa
tgttcttctcatccctgctaacataacatccattctgcagcccatggatcaagggataattttagctttcttgtttcattatttAAGAAATACATTTTGA
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAATACATTTTGAgctgggtgcgatggcttgcacttgtaattctagatactcaggaggctaaggtgggaggactgcttgaggctataagaat
gagaccatcctgagcaacatagtgagactttgtctctaaccaaataaagaaaagaagagaaaaagccagagctcagcaaggctgctgtagacagactgcc
agatttttcctctctggacagggaatctctgaaaaaaaggcagcagccccagtcagagacttatagatagaccgccccatctccctgggacagagcacct
gggggaagggacggctgtgggcgcagcttcagcagaattaaatgtccctgcctgatggctctgaagagagcagcggacctcccagtacagtgctcgatct
ctgct UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 55 451 130 NA intergenic
0 chr6 9371723 9371971 1000288 0 - Ya5NBC197; RIP_Alu_chr6_009_01 CAGAAGTAAGATTGCTGGATCGTAT CTCAATGAGATATCACCTCACACAT SINE Alu Ya5 acataatgtcctccaggttcatccatgttgtctcaaattacagaattttcttatttttttaaggctgaagagtgctccattgtgtattacaccattttct
ttatccattcatctttcagtagacatttaagttgattccatacctctgtctgttgtgaataatgctgcaatacacatgaaaatgcaggtatctcttcaac
atactgaattaatttcttttgaatatatacccagaagtaagattgctggatcgtatagtagtttcatgtttgtttttaaatgaatcttcgtgctattttt
cataatttctgtactaatttacattcctactaatagtatatacccttttgtccacatccttgccaaaagtttgaagtcttttgtcttattGAAAATAGCC
GCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGC
GCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGC
CTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAATAGCCattctaatatgtgtgaggtgatatctcattgaggttttaat
ttgcatttctctgatatttaatgatcttgagcattttttcatatacctgttggccatttgtatatttcctttcaagaaatgtctgttctgttgaccattt
tttaattgagatttttttgtttgagttccttgtatattttggatattaaccctttattagatgtatggtttacaattttttttcatttcgtagtttatct
tttcactccactgattgtttcctgtgttgtgtgaaagccttttaatttgatataattgaatttttctctttttgcttttgttgtgtgtgtttttgtggtc
atatccaaaaaataattggtcagaccaatattaagaagattttaaaaat UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 461 204 NA intergenic
0 chr6 124540622 124540928 1000289 0 - Ya55572; pAlu6-124433954; RIP_Alu_chr6_124_01 TAAAAGAGGCGCAACGGAGT TACATGGCACCTTTTTGCTG SINE Alu Ya5 tctactaaaaatacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaagctgaggcaggagaatggcgtgaacccaggagg
cggagcttgcagtgagcctagatcatgccactgcgctccagcctgggcaacagagcgagactctgtctcaaaaaaaaaaaaaaaagttaatgtacgtcta
aatccatttggctgctgtaacaaaatactagaaactggggggtctgataaacaacagaaatgtatttctcacagttctggaggctggaaagtgtaagata
aaagtaccagaaaatttggagtctattgaagccctcttcttcctgtttcttacatggcacctttttgctgcatcttcacatggtAAAATGGATGAACAGA
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAATGGATGAACAGAaactccgttgcgcctcttttataaaggctttaatcccattttgagagcttcctcctttatgacctaatcacttccca
aatggccccagctccttggaggttaggatttcaacatatagattttggggaaaaaaaaactttcaaccataacaatgtacgtaaaacacaatcatatctg
ctatgcagagatttctaaatagggattaatttttttgtatttcctattttcccaggataagtgtaataatgttatggactggtaatagactgatgccata
actatgttttaatgaggggttctgaaagtcaatacctgggccacaaaaaaggattccagtggtagtcatttacagaaatgtcacaggattataccagaag
tttaaaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 394 71 NA intron:NKAIN2:NM:001040214:1/7
0 chr6 105674547 105674865 1000290 0 + Ya5ACA1458; pAlu6-105567882; RIP_Alu_chr6_105_02 ACAGGCCCATAAAAACATGG TTGCTTGACTGTTGTGACAGG SINE Alu Ya5 gtcctcatgagggcccagccatgcacctaagtgctaaagacagttaggactgatgttccttcgttgtgcaaagatgtcacccaggactctggaaaagagt
gggtgaaggagttaaaagaggagatggaaatcatctatgagatgaagaaattatatttagatgatacataaggctgttaacttttcttcagccatctgaa
ttacctcaagtttccactgaggcaatgaaacttttacaatgacactgtaatttccttagcaaattcactttttattgatggttaaaaaattactttcgac
ctgtttaagttattattgaatataaaataatagtattcaaataataagccgtacttagttcatatgagtaacttacaggcccatAAAAACATGGATTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGAAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACATGGATTTGGttggaagccagtagttagagtgctgactgaggtcattttacttgattcctaatgtttcatttcta
ccaaatagacagtttatttaatgatttcctgtcacaacagtcaagcaaagtgtattttttatgagaatatcttataaagcaatataagaattttaaaagt
ttccataaaataaatttacttcttattaggcatttcagtagtgctatgcttgagtccttgtgaagaattttactgaagaaataaaagcaaatacggcaac
agaatacataaaaggacatctttcaggtcgagaattagactaagcatttgcaaacaggtttgccgtgattaccacaaggtactggatcagttcctccctt
tagattccaaaccaattct UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 474 139 NA intron:BVES:NM:007073:5/8
0 chr6 12011439 12011734 1000291 0 + 17222; Ya5ACA1491; pAlu6-11965898; RIP_Alu_chr6_012_02 TTCCATTAAGTCAGGCACAAA CCTGCAACTCCTACCCAGAA SINE Alu Ya5 aaaacacctaggtatataaaatactgagaaatgtttttattttgggtgggcccagctcagctaaaactcaggaggtctaattttgagaaacaagggaaaa
acaaatacttacagattaacagcaatcttttacataaaaattttccacccccaagtgaaaataagtagcagtttcactttttcaaaggctttagactatt
ttgtttcctagaaatatatttattttcattaatagattattgggtctgacctccaactcagataaaaccattggattccattttttattatccctatgag
ttctatcctaagaatatgaaataattcaagattccattaagtcaggcacaaattaccctttaattatattagtagtctatcatcAAAAGTCTTTAGAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GTCTTTAGAGTGaaaaggaaaatacatgaatgtataataaaagccaagaaaatgtaaaactattcattctgggtaggagttgcaggcttctctgagttca
gagatatttatgtaagatgtgcttagaagaacaatgtctttttaagctttgcatcccatgacatattaacagtaaaatttaaaagggactcagtaatcag
caaaatgacttatatgagaatgttcacaacttgtttcatactaaccgaaacctggaaatggtccaggatggatccataggtgaatggattagttgtaata
tatgcatacaagggtatatgcatactcatcaataaaaagaaacaaactattgatacatgcaacaacatggatatgtctcaaaagcattatgctgga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 455 143 NA intergenic
0 chr6 134859054 134859355 1000292 0 + pAlu6-134752390; Ya5ACA1497; RIP_Alu_chr6_134_01 GCAAGACTTCCTGAAAGGGA TGCAGTTCCAGAAAAGAGCA SINE Alu Ya5 tacagagaaacaactttctcactgccactactgcccactccaaacttcaggttcatgttgccccttcatttctttcggttaccatgttattagttcgtta
attctttaaatcatttcgcaaggatttactgtactgagcacctcttctgtgccaggaatgtgttaggtgcctgccgggaaggatttcaaaattgagggtg
gagacaggaaaatagacaacatctggttggcagcatgttaagaggtcagtgtaagatgggtgtagcctccgagagatccttaaaacatactgggggtact
aaaaacagatacttaaaacaggctggggcaggcaagacttcctgaaagggatgaggcctgcaccaagccagctaggtgaataggtGAAACAGCAGTGGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAACAGCAGTGGAGgatgacccagcaaagggagctgccgtgcatagccatgacatcacaagacaatgtgctcttttctggaactgcacttttttgtt
tgtttgtttgttttttgagatggagtcttgctctgttgccaggctggagtgcagtggcacgatctcaggtcactgcaaccttctccttcctggttcaagc
aattcccctgcctcagcctcctgagtagccggaaatacaggtgtgcaccaccatgcccagctgttttttttttattttattaaagacagggtttcaccat
attggccaggatggtctcaatctcctaacctggtgatcggctggcctcggcctcccaaagtgctgggattacatgcgtgagctactgcgcccagcctgac
gt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 459 142 NA intergenic
0 chr6 32611927 32611998 1000293 0 + 238419; Ya5ACA1508; RIP_Alu_chr6_032_01 TGCAGACAAACATGGAATGAA TTAGGGAAGAAGGGCTCCAT SINE Alu Ya5 ctgaggagaggacaggacaatcagctgcagagaggagccaccctctctgttgatagctgaacagatgtcggggcaacctggcagtggagaggagctgccc
actgtggctctctgagctgttctattgcttaataaagctcctctttgtcctgctaaccctttacttgtctgggtacctcattcttcctggacgcaggaca
ggaacctgggatctgcctaatgatgaggctaaaaaagctgtaacacaaacaggttgtagatgagcaatagagaatgtagtcaaatgcagacaaacatgga
atgaaaaagcaaaaataaatccatatcattccatgtaacaagaccattttttaaaagtagttttaagtggacagaaaaattgcagAGAAAGTTCATGGAG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAAGTTCATGGAGcccttcttccctaaagcagccttctgcttaatttctcctattcttaacatcctgcatcggtgtggtatacttgttaccactg
atgaagcaatactgatacttgttgttaactgagatccatagtgaaattagggatcattcttattatacagttctatgggttctgataaatatattatgtc
atatatccaccatttagtggaactgacccaagagtcccataggcagttttttttttttttaaataaacatagaaatggacacttctggtcttaaagcttg
aaacttacatttgttttatttgagttcctttccaaaaaaatattctcccaggcctctcaaaaagtatcaaagaactggaactcaccagatcgtctcatct
agt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 448 130 NA intergenic
0 chr6 22335464 22335733 1000294 0 + 238761; Ya5ACA1516; RIP_Alu_chr6_022_01 GGCAATTAAGGCACTGTGGT ACCATGTTCCCTGATGTTCA SINE Alu Ya5 agtacctgaggcctctccagctatgtggaatggagtcaattaaatctctttcctttataaattacccagtcttgagtatttttttaatagtagtctgaaa
actgactaatacacatcttttcctttctctgtctgaacatagatatggtccaccctcttcttgccctttctgccaggcttttccactgctatggagaaat
acagagtataagatacaaaagtcagtagttttgagacagattacgatttaaataattaaattgccacttaggcaattaaggcactgtggtacattaggat
tataacctgaactcctgaatataaattttaaaaaattattttggcccctattttccaatggtatttcaacctttattagcttcccattGAAAAACTTGTG
GGAGGCCGAGGCATGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGG
CGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCC
ACTGCACTCCAGCCTGGGCGACGGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAGAAAAACTTGTGtgcacagagaaaatgatt
cataactgcaatagccctgaacatcagggaacatggtaaattttccagaatgttggaagtattttactaaccaagtttggatcaggcttctatattaggc
aaaataggaagagcaccggacttggggtcctggtacctgccaccaagtagtggctttaaatgagtcacttttctgtagacattagctgcctcatctaaaa
agtaatgagattgaagctagtggcttttaagtgtcgtttaaggtacttacgtcctataacctgtttgtgtgtgtgtgtgtgtgcatctttacaaaagcag
atgagattgaatgaaaatttatgcctttctttttttgagtgcattatgtaatacactttgcagacttgtg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 467 165 NA intergenic
0 chr6 51625323 51625634 1000295 0 - Ya5ACA1532; pAlu6-51518660; 13202; RIP_Alu_chr6_051_01 CCCCTTGTGGCACATATAGAA GCTTCATGATGTCCTGAGCA SINE Alu Ya5 tcaggaccatgaaaggtaagaaaattgtatctatcaactcagaaggataaccagaaaagtcattcttgtcatacaaagtatacagaaggttattcttgag
ggggagagatcacagtgttctatatctttgcatatctcacagtgccttgaacaacatttgtacatagtagaagggttaacatatacttgttaactatata
gaaatatgttgatattagatttgcattttccctgtatataaacataatatatttaatttagaattctttagaattgactaaagaatttacttttttcttt
cagagtacaaaattgtccaaaatcattttatatttcaagtccccttgtggcacatatagaatatttggccttatctagcctatttaAAACAAGAGAGATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAAGAGAGATAaaaaatgctcaggacatcatgaagcattcaatcaaaacatgaggctttttataggaactcggcttagtagcttt
gagaagaaggttgaagagagagtatctctgatttccaccccaacttcacctcaccccaccacagtaggtcttgttgagagccagttttcactaataaaac
ttacttgctttctgagttttccatgcaaatagaaataattccatcttctacagggtaaacatttcagatctggtggaatcgaaaagcaagaataatgaca
tgaataggagtgatctcttaattgggaaatttctgtattttcttgacttttctcctatagcctgcatttaagcattgcagaaaaaaaaatctctcacata
cctaactgggta UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 411 85 NA intron:PKHD1:NM:138694:61/67
0 chr6 74477984 74478280 1000296 0 - 1968; Ya5ACA1570; RIP_Alu_chr6_074_02 AGAAAACTGCACATGTACCC ACTGTGAAGCAGAAACATTG SINE Alu Ya5 aactttaaaatacaatttttttttttttgagacggagtctcgcttcgttgcccaggctggagtgcagtggcatgatctcggctcactacaacctccgctt
tccaggttcaagcaatcctcctgcctcagccccccagtagctgggattagaggcatgcgccaccatacccggctaatttttgtataaaatacaatatttt
ttagagagtgaaataatagacattggagattcatatggcagggaggtaagggataagaaatgacttaatggatacaacatacactatttggctgatgttt
atactaaaagcccagactccaccactacccaaaatatccatgtaagaaaactgcacatgtaccccctaaatctataaaaataaaatattttAAAAACTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AACTTAaagtacgattttaaaaatacaatgtttctgcttcacagtttaatgtcactttaaggcaaaaaaactattgggtaaattcagtctacacagaaaa
cacaagtattctgagcagaacaaaaccaaacaaaaaatctcctttggtcccttacatactccttttatatttttctctcttatttccctttgcttacaaa
tatcttaataaatttgagtttcataaacaaagttttgttccattgtctaaaaaaaagcaggttaaacacaaacattgagtaaaaaaaaaagcaggtcaaa
cacaaacctactaaaagtaaaataaataaaatggtacactataaagcaaatgttaggttaagtacaaatgaaaaacccagagtcaagcaaggttctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:CD109:NM:133493:2/33
0 chr6 32765931 32765932 1000297 0 + Ya5ACA1571; RIP_Alu_chr6_032_02 CCTCCTGCAAGAACTAAGCG TCCAGTCAGTAGTGAAGGCATC SINE Alu Ya5 gcctgtctctggactcaactcaacatcccatgtcctcgctcagactatataactctagacccagcctgttaatatggactgcttgtattttttcagagaa
acctctaaaagaaattatcaatttcttcaaaacattaacttgataggttctttttaaatcaagtaatctgttgaaaaaaaaattatatgggtgctctaaa
ctatatcccctggataatctaacctgtaaatagtttgaacagttatcttttacagccagaataacaatactagttaataccagaggactaatctatgggt
agctcgtttcaaaatttactctgagagcttaaaagaaaatatattttgtagggaaacaaagcatatttttccaagatccagtcagtaGTGAAGGCATCTT
NNNNNNNNNNGTGAAGGCATCTTaatagtatccaggatcctcacatgtgaagaaaagtgaactaggtaacaaatgagaagacttacatacgcttagttct
tgcaggaggaaaggaactatctgggtatggaaaaggttactaggcaagattgtgattgaagagaaaggataatgataaaggggctttgcagaagctctgg
ttagaagaaataactaatagtaatgaatatgtatctctccaaccaatgagaagcatatgatgaggcagagtcacttgtctctggcagtccaagctactaa
gaagcacaaataaaatatatagtagcagggggagatgggaagggtgagagaatgtaggataaattaccattcaaactgccggtagaaatataaaattgta
aggaataaat Other - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 425 110 NA intergenic
0 chr6 168965076 168965382 1000298 0 + Ya5ACA1574; RIP_Alu_chr6_169_01 AGGAGAATCACTTGAACCTG GGATCAAGAAATGAAAATCG SINE Alu Ya5 cctccaggcagatcgccatccttggcacgaccactgcaggtcatttcacactggggcccctgtggtcttgcatttcctctcccatctttgagcacattat
aaaaagttctttgttggccgggcacagtggctcatgcctgtaatcccagaactttgggaggccaaggtgggtggatcatgaggtcaagcattcaaaacca
gcctggccaacatagtgaaaccccgtctctactaaaaaaacttacaaaaaattagctgggcgtggtggtgggtgcctgtaatcccagctacttgagaggc
tgaggcaggagaatcacttgaacctgggaggtggaggttgcagcgagccgtgattgcgccactgcactccagcccagatgacagtgcgagactctGTCTC
AAAAAAAAAAAAAACCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTA
CTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG
AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAGTTGTCTCtcttgtattttccactattgaatagagtgtgcttaggatgaaaatgacagagaatgcgattttcatttcttgatccgtcaatatttta
ctatgtgtctgggatgaagcactaattaccttaaaactgtaattaacttgtcaaatgtctttcctccaagaatcctgcaaaggtcttaaaggtcttaaag
ggtgagtaagtaatagtctgtgatataatttaaaaggaaggccacaaaccactttttctgtttttctttgatttcatggaatagtcttcattcttttctc
ctgtcctcctatttggatacatgtggctgccgtgagcctctagacgccctcccccacttccagcacttggctgacggatttgctggtctgtgacccctgc
cagaggc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 482 170 NA intergenic
0 chr7 34815595 34815941 1000299 0 - Ya5NBC28; RIP_Alu_chr7_034_01 GGGTACATGTGCAGGTTTCTTATAC GCTAACTGATGAGAACACACAGATACATAG SINE Alu Ya5 tgtagattgaagtctaatggagagcatttacttcactttcttcttggcagttatctttgttctgaattcgtgcctttttgttctttctctggctcagaca
aataacaatcaagcacattgtggttctttatgatttgttatttctacaaatgcatctcagcactaatgttgtgaaagccaccatagggaggaggttctga
ggaatgattagaaattgaaggctcgtaagaaagaatgagataatgtgctttgcagggacatggatggacatggatggagggcattatcttcagcaaacta
atgcaagaacagaaaacaaaatactgtatattctcacttataagtggaagctaactgatgagaacacacagatacatagaggggaacaaaacacaCTGGG
GCCTATAGGAGGGTGTAGGGTGGGAGGAGGGTTAGGATCAGGAAAAATAACTAATGAATATGAAGCTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTG
GATCACGAGGTCAGGAGATCCAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT
GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGG
GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAATACCTGGGtgattaaataatctgtacaacaaacccccatgacacaagtttacctgt
ataagaaacctgcacatgtacccctcaacttaaaataaaagttagaaaaaaggtttaaaaaaagaaattgaaggctcctctgaaaactaaaagaaaaaat
tatctcttgggaaaaggtgacaaatagagaaagagaaaaatggaagactagctttaagaaaaaaaaaatcgatcgtctacttagacaaaactggggtttc
tacctgtgatccatgaatttaaaattattaaggctggcaacaaacagaggaggaggtggcatcagagaaggatgaaaaagaaagcacacaatggcagaac
cctgtggagtggaacatcatggtgaggttataaggatcttggggctc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 55 474 191 NA intron:NPSR1:NM:207173:3/9
0 chr7 38248167 38248476 1000300 0 - Ya5NBC38; RIP_Alu_chr7_038_02 GTACCCTCTAATTTACAGTCATCTCATACC GAACTTCTCTGGCTTGAAAAATCAG SINE Alu Ya5 tactacactccagttgtgataaaaaagaaaaatgtattcttcacgaacttcaacattttgatatgcaaaaacatagtatataaattagatctacctgatt
acgtagaatcagaccaattatttctggaattgagggctcatatttttaataactgtcctcctgcctctctgttgacaggttttataaatattcatttaat
tacacacacacacacacacaccttgacaaataatggacatgaacaattgactagtacttgctctcattcttctagatgtcatcacaatggatcccaaaga
caattggtcaaaagatgcaaatggtaagcttttgtgtttttcctttcctcctgatcattttaagttttgaacttctctggcttGAAAAATCAGGGAATGG
GCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAGAAAAATCAGGGAATGGattttgctaggttggatgctgcagaatggacctagtgatattttaaattagtccctctttttctaggagttgt
attaacaaacctaactactgcttcgggtatgagatgactgtaaattagagggtacagtgatatgctttcagttatttcaaaaaacagactttattcatcc
gtctgtcttttttttttttttttttttttttttttgagacggaggagtctcactctatcacccaggctggagtgcagtggcgcgatctcggctcaccata
acctccgccttactggttcaagcgattctccagcctcagcttctcaagtagctgggactacaggtgcacaccaccatacctggctaatttttgtattttt
aatagagatg UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 487 170 NA intergenic
0 chr7 80840791 80841086 1000301 0 + Ya5NBC194; RIP_Alu_chr7_080_01 TATTCTTATGCCGTTATGTCCTCAG CCATGGAATACTACTCAGCTATGAA SINE Alu Ya5 agaaaataaatattctctttacataggtattttaagaaggcaataagataagtgtacttggatactgggatgcacaggtttgtttgtttttttttccaat
ctttttttttttttaatttcaataggttttggaaaacaggtggtgtttggttacatgaataagttttttagtagtgatttctgagattttggtgtaccta
tcacccgagcagtgtacactgtacccaatgttagtcttttaaccctcacccacctaccaccttttccctcgagtccccaaagttgattgtattattctta
tgccgttatgtcctcagagcttagctcccacttataggagctaacatatagtgtttggttttctattgctgagttacttcacttAGAATAATGGGCTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCAGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
TAATGGGCTCCAattccatctaggttgctgtgaatgccattatttcattccttttcatagctgagtagtattccatggtagtagtattccatatatatat
atggaatatatatatgtggaatatatatatatatatatatatatatatatatatggatacacacacacacacatgcacacacacacacatatacactgca
ttttctttatccacttgttggttgatgggcatttgggctggttctatatttcaacaaatgcgaattgtgctgctataaacatgtatatgcaagtgtcttt
tatatataatgactttttttttcctctgggtagacacccaggagtgggattgctggatcaaatggtaaatctacttttagttctttaaagaatctc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 486 169 NA intergenic
0 chr7 29239970 29240270 1000302 0 - Ya5NBC203; RIP_Alu_chr7_029_01 CAGCCTGTAGAAGCTGGAAAAG ATACAACAGTTCTGGAGGTCTGAAG SINE Alu Ya5 tcaccactgactgagcctttaaaaatcccatgcaaacttaagagttataacctggggccaatggagggcttcagtgaggtttatgggccccattaaattt
tatgattttgtgcactgaattattttaaaagaatgagtctgatcgaggaaggtttagaatctgctgctttaagaaatggtaccagacattacgtcattac
cataatgaaaatctgcccttttttagtgtcatgatctcaaacaactaatattttcattcactcggtcactatatcagtttcttattgctgcagcaacaaa
ttaccatatacttggtggcttaaaataacacaaacttattatacaacagttctggaggtctgaagtctgaaatcgttcaaggtaAAATCAAGGTGTTGGC
CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAA
AAAATCAAGGTGTTGGCagggctgcattctagggaaaagagaatccattttccatttcttggccttttccagcttctacaggctgccagcagtcctgggc
tggtggtctccttgcatcttcagggccagcaatggcccgttgagtctttctcactttgcatttttctgaaactgacccttctgtctccctctttcacatt
taaaggacccttgtgaatacatcagacccacaggaagatccaggataatctccttaatctcaaaaccagctgagagaaaccttaagcccatctccaacct
taattcccactagccacacaacctaacatgtttacaggttccaagtggaagtcgacatcttgggtgggagtgcatttttctacctaccactgttacttca
c UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 55 445 128 NA intron:CHN2:NM:004067:1/13
0 chr7 113045708 113046026 1000303 0 + Ya5NBC204; RIP_Alu_chr7_112_01 AAGCAAATCAGTCCTACCATGA TATTTTGGAGAGTTGTAGGCAGGA SINE Alu Ya5 agaaggtttattcctagacaggtaggccccaaaagctcatttttagaaagttgtgaagtctcagatcctatgaagagaagatagcgggaggaaggaagaa
aaacaataacaaacaaaggaatgatcctagaaaattgatatagatcttacgtatgtaaataggttgctgttttttttttctttgtagtttaagttgtcta
gctttagttctcagggctgtaaaaaagaacagcttagttttcagtgatttcaaattaggaaaaaaatgagggggaaaggaaaagaaagaagaaaaaatga
aaatattattttggagagttgtaggcaggaaaaaatagaattcagcacaaattgtagaaaacaataaaaattgaaaagcattaggcAAGATTAGAATCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGATTAGAATCTAacaacaagtgtactatagttttgaaacataatttttctctgtcaagtttcccatttttattaaagac
aaatcatggtaggactgatttgctttattacacttggtcagattatttgtataaagtgcagaaaaaattattttttatataggctttttaaaattggctt
tgatggaattttattccatagaaggcatctcagataagacttttttaaagctgagctcagtcatggatttgtgccatcaaatacctatgagttgggtgaa
tttcctctactcttgaggttccaagatatacctggggctccgggacctgtcagaaagtgaccttctttacttaccacaggtcagaaaccctgtacaggga
ttctgtacatagaacatga UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 55 5199 186 NA intergenic
0 chr7 7683815 7684129 1000304 0 - Ya5NBC214; RIP_Alu_chr7_007_01 TGTTGTTGCAAAGGACAGGA ACGTCCACATTCCCATGTTT SINE Alu Ya5 tgaccaataggcatattaaaaaaacgttcaatattgttgatcatcagagaaatgcaaatcaaaatcaaaatgagatatcatctcaacccagttaaaatgg
ctttaatccaaaagataagcaataacaaatgctggcaaggatgtgtagaaaagggacctcataccctggtggcaggaatgtaaattagtacagccagtat
gaagaccagtatggagattcctcaaaaaaactaaaaacagaactactatatgatacagcaattctattgctgggtacatacccaaaagaagaaatcagca
tatcaaagagacgtccacattcccatgtttattgcagtactattcacaatagccaacatatagaatcaacctaagtgtctccatcAACAGATGAATAGAT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAACAAAAAAACAGATGAATAGATaaagaaaatgtggtacatatacacaatggaatactatttagccataaaaaaagaatgaaatcctgtcctt
tgcaacaacatagatggtactagaggagatcatgtaaagtgaaataaagcaggcacaaaaagacaaatttcacattttctcactcatatgagggagctca
gtttttttcaaattgaactcatggagatagagaatagaatgatggttaccaaaggcaaggaagggtagcagaaagagggaaataaaatggggatggatga
tgggtacaaaaatacagttagatagaaggaataagatctagtatttggtagcacaatagggtgactatagttaacaataatttattgtatatttttaaat
aactaaaagagtgga UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 55 500 170 NA intron:RPA3:NM:002947:4/8
0 chr7 110329935 110330245 1000305 0 + Ya5539; RIP_Alu_chr7_110_01 GTTGTAGGTTGGGGATGGAC CCTTCAGATGTTCCCCATTG SINE Alu Ya5 ttcaaaatataataatgatattaacagcctactattaattatagaaaaaataataagtgacagtaaattaggttttgtgaaacaaacaaaaaacagtaat
taaacccagatacctaaaagcctgtacacttaactaatggtccatactcctttaaaaaaaaaagattaattctgattgggctgatcctgatctggaaaat
tagaaaaataaaatataaatatgtcatgaatgataaaatatatatatatatatatatatagtatcaagggttcatgttggaaaaaccctgagttctttgg
tttgtctgaaatgtggtttaatggaaaccaccaaacgtaggttgtaggttggggatggaccgtagagagactttaatatcaatctAAAGAGTACAGACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAGTACAGACTCtattttgtaggcaatggggaacatctgaagggtgttaataaaaaaagtgacaagattatacttaattatccttc
tgaaactagcagcctgagggccaaatggactcagctgaacagccagcgactgatgaaagccattcttcaataaattcaatacaattaggttcccccagag
tggcacccttgcttgccacacacaccaggctaacactgattacggggcaatatttgagtatacgtggtatgtggctgtgtatttcttttgggtaaatttt
attgtggtaaaagcacttaccatgagatatactctctcaacagatttttaagtgtaggatacattattgttgagtataggtacaatgttatatgtcagat
ttctgaatttc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 417 89 NA intron:IMMP2L:NM:032549:4/6
0 chr7 118131052 118131391 1000306 0 - pAlu7-117884412; Ya5ACA1616; RIP_Alu_chr7_117_01 TGATTCCACCAGAATAGTGACA GGACTTCCCCTTACCAAAGC SINE Alu Ya5 tatttatataataatccataagtcttcagaaaagtagttgagaagaaccacatttcaatttgaccagttgcttctggatactggaatatgtggtaagact
aaacaattccaggggcatgagcctattgctgaacttcctttgctataaaaagagtcccttgattagaacaaattcagagtggaataccatgatggtggat
aaggcatttgtgagtgtatagatatggattttgacagaattatgggcaaggaaggcaaatctacccccagaatagttgtctatcctaaggggaatgaaac
tttgccttctgtacaattgaaagcattcaatgaaatgaacatatcattaaatatttagttgattccaccagaatagtgacatattGAAAGTGCAGTCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGAACGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAAACAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTGCAGTCTGGaactctactattgttaaattaggcactcagctttagcagtagcag
aatgagctttggtaaggggaagtccacttagttgagtctacatataaccactatttctgccaaaatggccactttgttcatggggttgagtacacacaac
ataaaccagtgtctctggagaaagatgctggctgatatccataaaatatgtcattttttccacctgattgtccagccaatccattagaaactacccataa
atcaaagtatatccatacttctgatcattcccctttccaatgtatcactcaaggttctgtccactgggcagaactggctttactacaatactttagtact
cccgcttattgggttgtaaatgccagtgtctgaggtagaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 466 111 NA intergenic
0 chr7 33865382 33865697 1000307 0 - pAlu7-33606992; Ya5NBC209; 3791; Ya5ACA1653; RIP_Alu_chr7_033_01 CCTGCTCACTGCTTTTGCTT CACCTAGGAAGGGTTAGGGC SINE Alu Ya5 aacaaaaaaaatgaatggatattggtactttctaccccagggtgtgctctatgctggctcccaaagatccacagcaggactaagctttagattcccagta
gtaacttgcttgatgatgaacccttatcttcgctgcccttcctccctgcctcactttcccactctcctaccagtgtttcctgggatcacctccattaatg
tccttatcttagtatctgcttctggtgggacacagaccaagacatcatttgtgaaagagatcagtccttttgctacaagctctccttttccaaaataaga
ggtgaacttcgatggagtcactcatgtgaaaagtagttactatacatatcacatgtgccaaggcccctgctcactgcttttgcttAGAAAGCCAGGCTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAAGCCAGGCTCAatcctattcttcatcttcccatagactaaagagaagtggggaataatgatgaaaagtcaaggctccaga
gtcagagcacctgggattggatcccagccctaacccttcctaggtgtgcaattttgaataattcattctccatgtctccaagtcttcatttctctgtctg
taacatggataaaatagttgtgtctaccgtaagagatttaaatgagatcacttatgcaaagcactgaacacatcatgtggtgcacagcacatgctcaata
agtggcagattctcttattgaccttctagtttcaatttaaatgccctctctttgcggaagccttgcctgacctaagagtaaggttttctcatatgttccc
acaagatccctattct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 447 116 NA intergenic
0 chr4 133333504 133333809 1000308 0 - Ya5ACA1251; RIP_Alu_chr4_133_01 GGCAGATACTGTGAAATGCT AAGTGCTGGGATTACAGATG SINE Alu Ya5 agatgtcttcaatgaggttaaatgttaaattatttactcagcacttatttctttattataagggacatttactaggcgagttccccattctccctttaga
gatacttaatatctagctaattcattactatttcagtaagaaaaattagaaatatttccagagattactttgggaaccaattactatccacacagtgcat
aaaaccatactgaattggagatgttcactccttacaattcagaaatacactatgtgataacattcagaggcagatactgtgaaatgctttgaggcctaaa
gattttatttaagaatatcatcatatatcataaatgaccaaaaaaattggtgaaaatgaatcatctcacttcatatgattgattcttAAGAAAAAGATGG
GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAAAGATGGgctgggcatggtggctcacatctgtaatcccagcactttgggaggccgaggtgggtgaatcatgaggtcaggagttcgaga
ccagtctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaaaattagcggggtgtggtggtatacacctgtaatcccagctactcgggaggc
tatggcaggaaaatcgtgtgaacctgggaggtggaggttgcagtgaaccgggatcatgccattgcactccagccagggcaacagtgtgagattctatctc
aaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaagatgacaccattctccctacttcatctgcctccccaccttactctcaccaaaatgaatagatgca
aataaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 489 170 NA intergenic
0 chr7 68100020 68100325 1000309 0 + pAlu7-67860298; Ya5ACA1684; RIP_Alu_chr7_067_01 AGGACAGGAAACAAATCCCC CTCCAGGGTGTTCCCATAGA SINE Alu Ya5 aaaacaaacaaacaaacatgtaacccagaatcttttccccaatctttgccccaaattagtgcagaggagggtctgtagtacaaggctcagccacgtgagg
gattgttacaaggagacaggggggttctgatgttagggagactggcctagacaatcacattcttgtggaagaacaaggacaaggttgtctgccagtgtgg
gatgagcccgggtggatcacgatggactcagagctgctgatgtttaactgaagaaaagggagatggaggccaaacaaaacaaagggggctttctccaaga
agtgccaaccttctctgtaacactgccccaatgatcccacaaagacttatataggaggacaggaaacaaatccccacggtaaccgatAAAAAGAAACCCA
GGCCGGGCGCGGTGGCTCACGCCTCTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAACCCAaagccatcacttaccgggggaaatggcttccaatgctggttccttaaagaatgaacaagaacatccttgaatcctgtagcc
agctatctatgggaacaccctggagggcatgatgagaagaagaacccttatgagcctcatgccctagctggagaggagagaaatgcactcaccaacaaag
tgaatttacaattgcagacacactctgttacaggccaaataattgtgagctcctttctttttctttccttttcttttttttttttttttttttttttttg
agatggagtcccctgttgtccagtctggagcacagcggcatgatctcagctcactgcaacctctgcctcctgggttctgcctcaagctattctgcctcag
cctccc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 470 151 NA intergenic
0 chr7 25011139 25011455 1000310 0 + Ya5ACA1721; pAlu7-24752784; RIP_Alu_chr7_024_02 GTTTCAACATGTAACCAATGAG TCAGAAGGGTAAGCTCAAAG SINE Alu Ya5 acccaggctggagtgcaacggtgcaatcttggctcactgcaacctctgcctcctaggttcaagcaattctcctgcctcagcctcccaagtagctgggatt
acaggcatgcaccaccatgcccggctaatttttgtattattagtagagacgggggtttcactatgttggccaggctggtctcgatctcctgacctcaggt
tatccatccacctcagtctcccaaagtgctgggattataggcatgagccaacccatccagcctggttttatttttaaaaaacatattttcttttatacaa
tgttcctaaaatgttgtttcaacatgtaaccaatgagaatatattaatgagacattccagtttaaaatgtcaatagtacttcaagattGAGAAACTTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGAAAAAAAAGAAAAAGAGAAACTTTGGtttagatactggttgcatcactaaccaaatatatggctttgagcttacccttctgaatatcactcaatatt
cccacataaaaatggggagaataatacttatgtcacagtggtaatacctaaaactttttgaaagtactcacaatgggccaggcacaggaaaccaaaataa
ggagactgaagttcagaaaggttggtgaactcaagttttaccactagtgagtggctgagcaggattagaaactagtccaaatatgatcctttacatgcct
ctgagcctccagcttgaggggtgtatggctcccttgaccattcagttggaggggtcacttgcacttccatggcctccttgcacagagctgatcagaatta
cgcagatcattgacaac UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 470 141 NA intergenic
0 chr8 126093294 126093295 1000311 0 - Ya5ACA1736; pAlu8-125692903;1104685371245; RIP_Alu_chr8_126_01 CCTGCTCTGCACACTTCTTG;NA GCTAGTCAGGGAAACAACAGG;NA SINE Alu Ya5 aagttagtaacaagaaaacacttcaaatgactttccattgtctgtaagattaaatgttaatggtctgtctcccactctgacacccaccctatgctcctgc
cataggaaactgcttgagttccttgaaagtgccaccatttctcatcctttggcaatgttattccatctacctagaagttcctcatcttactgtccacctc
atgaactcccactcatcctccaggtccaaggtcctttgtttccactgtttcctgaacaacgtcctccctaactacccctcccatttcacaagcttccctc
cctgctctgcacacttcttgacactgaatctgtgggttttatttatcaacagtgttgtaaaattatctgtctacattcctaagtagaaaattGCCTTCTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGCAGGAGAATGGT
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAGGCCTTCTCtaggtcaaggtcagttttttacctgttgtttccctgactagcacaatacttctatacac
tcaatgttaataactaaatagatcataaaactaattttggtattaataatgcactaatccacagtgacaaactatctgtcccagaagttattcgtaacag
tataaatttaatcatatatttgtcatttggaatactgattcctttataaaataagcccaaaaaataatacctcgtttcttcactgatgaaggaggaagga
agcttgctggcatggacctcagatgagaattgtcagtggcttctaagaatggttctttcaggtgatctgcaataaatcccaccaacccaaagaaatgggt
cataacacttcaatttcaaagtatcacatattt Other;Venter - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 60;NA 484;NA 141;NA NA;NA intron:SQLE:NM:003129:7/11
0 chr8 15045651 15045957 1000312 0 - pAlu8-14776369; 3648; Ya5ACA1785; RIP_Alu_chr8_015_01 TCCTCTCACCCAGAAAGCAG ATTAACCCATCTCCTTGGGG SINE Alu Ya5 aaaaaagtgaatgtcaacctgctaagacaacaaactgtatagaactacttctgagcctgttgcatgaaaagccttcattaaactaggaaacgttaatatt
tgaggatatgcaacaataataggtcaacctgaggtacaaaaataacacagaagctgtagagctttgttgaaattgtgtagcatataacaaagatatatag
gatcaagtacattaaaaatgcataagaaatattttaagtctgaacctttgccaagaactgtgatatcatttgtggaatgcaattttctgattctgtatca
ccttttattacaccaacttcaaaatgccagaaactgatgtttcctctcacccagaaagcagaaatgaaacagatattttgctaagttAAGGTAATAATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGTAATAATAGattgaccacagataaataagcaattacaataactaaattataaggaaacactaccttactttagagatgcaaaaactgag
ccccaaggagatgggttaattctcctagtgtcagacatagtgagactaggagatgtgttaatagatgggttaaacccatgtgtttttgtaagccatggtt
ttcagaaagaagtaacttaaataaaacctaaatggtacttaactaatttccaatgatctggctattttcaaaacactttggaaaactggagcatgagaat
attataaatgcaaaatgtttctttgaaattctcttaaatacatttcattttttttcctgtgagagctactttgcttgagccttatagaaataattctgct
tttgagt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 479 159 NA intron:SGCZ:NM:139167:1/8
0 chr9 21908070 21908371 1000313 0 + Ya5NBC184; RIP_Alu_chr9_021_01 CTTGGATAGAGCTGGAGGTCATTA ACCCAAGCAGTTTATACTGTACCC SINE Alu Ya5 aaagtaatatgcagattccttaaagaactaaaagtagaactaccattcaatccagtaatcccactactgagtatctacccaaaggaaaagaagtcatata
aaaaagacacatgtacatgtatgtttatagcagcacaattagcaaatgcaagaatatggaaccaatctaagtgcccatcgaccgagttgataataaaaat
atggtatatatgtatatgccatggaatactactgagctataaaaaggaacaataataatgtcttttgcggcaacttggatagagctggaggtcattattg
taagtgaagtaactcaggaatggaaaacccaatattgtatgttttcacttacaagtggaacttagctataaggatgcaaaggcatAAGAGTGATTAATGG
GCCGGGCGCGGTGGCTCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAGAGTGATTAATGGactttgggggctcgatgggggaggtttggaggggttaagggataagagaatattgggtacagtataaactgcttgggtgacag
gcacactaaaatttcagaaattagcactaaagaacttacccatttaaccaaaaaccatctgtacccccaaaaactattgaaattaaaaaaaaattgtgat
tgatgtggtttcgctgcatcctcgcccaaatctcatttgtattttagccccaataatccccacatgtcatggaagggacctggtggcaggtaattgaatc
atggaggtgggtctttctcgtgctgttctcgtgatagtgaataaatctcacaagatctgatggttttataaaggggagttcccctgcacatgccctcttt
gc UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 522 205 NA intergenic
0 chr9 26502939 26503242 1000314 0 - Ya5ACA1861; RIP_Alu_chr9_026_01 TATTTCCACCAAGAGGGAGC GGCTCGGTTGGTTGTTTTAG SINE Alu Ya5 cttctgagaagtagttcgttgcttcatgttgataactcaattttgttctcaattcaaagccttccagtcgatatattttaatttctttttctctttttca
aacactttagctaactggagtcttgttttatccctagagaacaacttcaggtgataggtagatggcatggatacctgctgttagctttgtataagaagac
aacagaaatgggatcactgtgtatgcatgcccaaggtgaaatagatatcaaagtcagtttcaaatatttccaccaagagggagcagaaggagtagaaaag
ctatccatacaataaaaagaagaagaaaaggaaaggaaaaaaaaaaaaaaggagcacaacaatttccggtaaagttaatagaaatttttAAAATGCTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAATGCTTGAatatatgtttctaaaacaaccaaccgagcctgtgaatttagataaacatgctcagatctcttaatgcccatgctggttgtgcatg
ttaggcaacttgcttccacctgtaaaccaaaattgtgaatctgaccatttcttaaaatatcagatacctgttaggttaaaaaaaaaaacaacctcacaaa
aattttacttttgaattctaagccaggatgaaatttaatcgcagttataaatcctccaagcaaggatttgtctggaattgccaacatcacccctagttca
gcaatgcaaatgacactgctataatataagaaataagaaagctttcagtatgttgtctaagaacttgagcacattgaaagtgatttatgagccagcagac
taaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 60 481 166 NA intergenic
0 chr4 107639249 107639545 1000315 0 - Ya5ACA1145; RIP_Alu_chr4_107_01 GGAGGTTTGAGAACTGACCG CCAATCAAGCTTTTCTCCCA SINE Alu Ya5 caggagttgaatatgaggcatgttgagtctaagagatattgctggatacaggaatatcaggtctggacaaaagatggtcctagaggtatgactatggaaa
taattaatatacggataatatttaacactgtgagtataaagaggaaaacagaaagaacataatatttcaaaattaagaagtcaagaagaggattcagcca
agaagactgagaagtagcaaccaggaagatggaaagaaaacaaaaagaatatgataccttggaaaccaagtgaagaaagtttattaagaaagaggaagtg
atcaaatgtgtcaaatgatgctgaccagccaagtaagaggaggtttgagaactgaccgtcagatcatggaggttattggtgaccttaagaagagcatttt
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAgcc
gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaa
accccgtctctactaaaaatacaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaa
cccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaagaagagcattttttttttttttactcaactgggagaaaagcttgattggatcagattaagagaaagggagaagaattacagacgaggaa UCSC - Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR NA 55 719 400 NA intergenic
0 chr13 38397638 38397639 1000316 0 + HS2.25; RIP_Alu_chr13_038_02 CAGCTAAGAGATGGAATCAACC ATCCATTAACCAGCCTCTCC SINE Alu Ya5 agttttctcaaaaactaaaacagcagcaacaacaacaaacttaaaatgaactgccatatgaccctgcaatcccactaccagacatttaactgatagaaag
gaaattagtacatcaaagggccacctgcatccccacgtgtgttgtagcactatttacgacagctaagagatggaatcaacctaaatgttcatcgaaagac
aaatggatcaagaaaatgttgtatatacaaaatgaaacactattcagccataaaatgaaataaaatcctgtcatttgcagcaacatggacaagtctggag
gacattatgttaagggcaggcacagaaaggtaaatactgtgtgttctctctcatatgtgggagcttaaaaaaaaattagctcatGAAAGTAGAGAGTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAAAGTAGAGAGTTGAattgtaggtattagaggctgggaaaggtagtgggcaggagagga
gaggctggttaatggatacaaaattatagctgaggtaggaggaatgagttttggtgttctgtggcattgcagggtggatatggttaactatgatttattg
catattttcaaaaagctagaagagaggattttgaacattcacaacacaaagaaatgttaagtatttgaagtggtaaatatgctaattagcctgatttgaa
cattacacattgtatatatgtatcaagatattactcactctgtattccataaatatgtgtatatgtatcaattaaaagcaaaagaaaaaatatgtatccc
ataaaacaatagaatatgggccaaccttaatgatttgctt Other - Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL,Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11. PMID:9360633.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr1 65908309 65908631 1000317 0 + HS4.14; RIP_Alu_chr1_065_01 AAGAGAAGATCAGTAGG TATGGCTCAGAATACAG SINE Alu Ya5 tgtgaactctaattaaaagaaagttaaattgcctataataatatgagacagagattgtagggcaaagaatattaccagggataaagagagaaatgccata
ataataaggacataaactccttaagaggatataacaattctgaatatgtatatgcctaaaaccagcttcaaaatacttgaagaaaaatggatagaattgc
atggagaaatagacaaatccacaattatatatgaagcactaataatcatttccaataattgataaaacacataaagagaagatcagtaggtatataaaat
atttaacatcatcaagcaactattcataattacatttataaaagactccacccaaacagcagaatatgcattttaaaggatgcacataaaacATTCACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTGCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATTCACCAatatgggctgtattctgagccataaaacaaatttcaatacatttaaaagaattcaaatcatacaaagca
agttctttttattcaatgggattaaactacattccaatcaccaaaaaaatggaaatttcccaaatacataaaaacaacatagtacggttataaataactc
atggacaaagatgaaatcaatagaaaaaatgtaaaatattttaactgaattaaagtgaaaacatagtatatcaaaacttgtgagatgtagttaaagtact
acttagcaggaaattgacggcattacgtatttaaattagaaaaggaagaagctgtcaaataaatgacctcatcttcaatctgaaagaaactacaagagca
catgaaatatgaagtatgctgaa UCSC - Arcot SS, DeAngelis MM, Sherry ST, Adamson AW, Lamerdin JE, Deininger PL,Carrano AV, Batzer MA. Identification and characterization of two polymorphic Ya5 Alu repeats. Mutat Res. 1997 Sep;382(1-2):5-11. PMID:9360633.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr19 22559998 22560310 1000318 0 - Yb8Sb23467; Yb8AC1805; Sb19.3; RIP_Alu_chr19_022_01 TCTAGGCCCAGATTTATGGTAACTG AAGCACAATTGGTTATTTTCTGAC SINE Alu Yb8 tcaatctaaccgaactaatatttagtgagaggttaatataaactaggcattggtgtatagatttgacaagatgaaaatttcaccctcaagtagatcccat
agttatcagaagacaaaaacataaaaataactgtaatattgagtggtatattccaatctagttttaaacattgtattggtgctaaggaagttagaaaaac
aaaccagacacaaaatctgcccacaagtgcttgtaatttacttgaagaacttaattctaacatagtttcatcaggtaattcaggtaaatattcactctag
gcccagatttatggtaactgataattattgataatttctttagatttgttgatattctacttgatgaaacatccaaattttactttatgtAAATGTGGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAATGTGGCCaaaagtgtcagaaaataaccaattgtgctttttataaaacaacaatgaacaacgcttgactaaagccaccacacaga
gcgactatcattatgggtaggttgtctttgaattttaaggtattaatcacagaagaggaaactcagtcctgagaattgcctattgggtggttaatcattt
ctgttagttacattttgactaatcatccatccatccatccatccatccatccatccatccatccatccatccatccatttatccatccatccagccagcc
agccagccagctaatatcccatcccactccacaggaatatggtgggcatctcaatattagctgtaagctgaagctggctcatataggcttctgagggacg
attgttaaatttc UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56. PMID:9719639.
E:Insertion-specific detection:PCR NA 60 494 171 NA intergenic
0 chr19 56552458 56552459 1000319 0 - Sb19.10; RIP_Alu_chr19_056_02 GCCAAGAAATAAAATAGCCCTCC TGGGATTACAGGCATAAGCCAACAT SINE Alu Yb8 ctcacgcctgtaatcccctgcctttgagaggccgaggtgggtggatcaccagagatcgggagttcgagaccagcctggccaacatagtgaaaccctgtct
ctattaaaaatacaaaaaattagctgggcgtggtggtgggcacctgtaatcacagctactcaggaggctgaggcaggagaatcgcttgaactggggaggc
agaggttgcaatgagctgagatcatgccactgctctccatcctggacaacagagcaagactccatctcaaaaaaaaaaaaaaaaagaaagaaagaaaaaa
aggattgtggtgggccaagaaataaaatagccctccaaaacagccaggtttcaatccctggcacctgagaaggggaaatcacttAGAAACAGGGTCTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGC301GGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAACAGGGTCTTTGcaggctggccatgttggcttatgcctgtaatcccagcactttgggaggccgaggagagcagatcacc
tgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgtggtgatgcatgcctgtaatc
ccagctacttgggaggctgaggcaggcaaattgcttgaacccgggaggcagaggttgcagtgagccgagatttcaccactgtactccagcctgggcgaca
gagcgagagcccatctaaaaaaaaaaaaaaaagaaattagaaacagggtctttgcagatgtgattaaattaagcatcttgagatgggggcattatcctgg
attatttaggtgggccc Other - Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56. PMID:9719639.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:ETFB:NM:001985:1/6
0 chr19 61803373 61803676 1000320 0 - Sb19.12; RIP_Alu_chr19_061_01 TTAACATCCCTGCAACCCATC GATTATAGTCACCCTGTTGTGC SINE Alu Yb8 aacttccacccaggggctctcagagccagattcgcctagagaaatgcatcttgattcaattctcctccagttctcctgacaagctcaggataaagtctca
agtggagagatatcttaacatccctgcaacccatcactcgccccttgaaacaaaagaaaagcaggagaataagatcctgtgatttgcaacaacatggata
aaactggaggtcattatgttaagtgaaataagccaggcatagaaagacaaactttgcaagttctcacttgtgtgagctaaaaattaaaacaaactcatgg
agatagagactagaatgatgaagaaacctgaggctgggaagggtagtggaagggtggggggaatgtggggatggctaattggtattAAAAAAATACAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATACAGAGggttgcagtgagccaagattgcaccactgcactccagcctggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaa
caaaccccaaaaaaacaaaaaaacacacacacaaagaatgaataagacctactatttgacagcacaacagggtgactatgatcaataataatttaatgat
acatttaaaaataactggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagacc
acggtgaaaccccgtctctaccaaaaatacaaaaaattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggaaggagaatg
gcat UCSC - Arcot SS, Adamson AW, Risch GW, LaFleur J, Robichaux MB, Lamerdin JE, CarranoAV, Batzer MA. High-resolution cartography of recently integrated human chromosome 19-specificAlu fossils. J Mol Biol. 1998 Sep 4;281(5):843-56. PMID:9719639.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:ZNF71:NM:021216:1/3
0 chr1 195278290 195278586 1000321 0 + FXIIIB; RIP_Alu_chr1_193_01 TCAACTCCATGAGATTTTCAGAAGT CTGGAAAAAATGTATTCAGGTGAGT SINE Alu HS-1 gctgagagcactgtgttcagttactttcttcaacaactacttattaaatgcctatgtgtcaaacattatgctggaagtgctacaggtgatgaaaatgaac
aagaattattacactcattacaaaatagttgtgaaaatgaagtcgaatagcactataatttacgatgtcactgttctacagaacatgagatttaaattaa
aataaatttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaa
acaggaagcatttcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaaatgtattcaggtgagttcaacaTCTATGTGA
GGCTGGGCGTGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACAT
GGTGAAACCCCATCTCTACAAAAAAAAAAAAAAAATAGCCGGGCATGGTGGCATGCACCTGTAATCCCAGCTACTCGGGAAAGCTGAGGCAGAAGAATCT
CTTGAACCTAGAAGGTGGAGGTTGCAGTGAGCAGGGATCGCACCACTGCACTCCAGCCTGGGCAACAAAAGGAGACTGTCTAAAAAAAAAAAAAAATTCT
ATGTGCcatttttttctcttgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaac
ttctgaaaatctcatggagttgaagatagaaaaatgagaatttcggtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtg
tagagatatgagtttgaggctctgcactagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcagaaagtaa
ataaaaagttacagtgggcatttggcagtctcccagtaatatcagagacagtcaaggagaaaaagctttaatacacacaacaaaccctctgtaaaga UCSC - Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9. PMID:8576959.
E:Insertion-specific detection:PCR NA NA NA NA NA intron:F13B:NM:001994:10/12
0 chr3 179593740 179593741 1000322 0 + D1; RIP_Alu_chr3_179_01 TGCTGATGCCCAGGGTTAGTAAA TTTCTGCTATGCTCTTCCCTCTC SINE Alu NA attcagttaacattactcaaattggcaaaaaaaactagtcatgcacaagacaattattactaatgtgtttaaacatccttaaatacgttctgtttcactt
ctttcactttatttggataatcaactccactttaattttccaatactgctaatcagggttcaatccccaaaagcaagtaaaactgagatgtcccttaatt
atcaagagatcctactcttcagatctgctgatgcccagggttagtaaaaaatgtgtcagtactcagattagcaatacttgtggtttattttacataaaat
acttctccactggtatttcttcattgattgatatatgatagctgatatcagtgtacatcaatccaaaatatgctgtggtagatttttgcttaAAAAATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA
AAATAAAAAAATAAAAAAAAAAAAAAAAAAAAAATGGgaagaagtagatttcggcaggccaatgctgcccctgagaataaaaagaaaaaaagccacataa
catatggtaatcatctgtttgaagtcttcacactgctacaacagaaaagagaaatggaaaaaccataactccagagagggaagagcatagcagaaataca
cagaattctgtagttatatttacccttgtggcttttggcaattttgtgcatgggccaaaggatgaatgttatatgtgtagattaaatgatatccagatac
ctggtaaaacattatttcttggtgtgtctgtgagggtgtttctggaagagattcacatttgaatcagtagactgagcaaagaatatccatcctcaccaat
gtgggcagcatcatgcaatccattgatgg Other - Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9. PMID:8576959.
- Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chr6 12207408 12207684 1000323 0 - HSC37; RIP_Alu_chr6_012_03 CTACATGATGTGGGGTGGGCCTGCT CTTTGGGAGTCCAGCCCACTGTGAA SINE Alu Ya8 aaagcaatctagattacatatctaaccacacttaagaaatcaaagcaataataacgcactgtttacaaatcctgcctgttaagtaaaggaatccatcctt
tctgacacctctaccatccatcatcgattcaataaacatttgtcaaatgcctactacatgcactaagaactgtagtaagtgctgtgctatgactgtgggc
aaaactgtataggggaagatgtgaggagaccccaggcagaggtgagagggtgagggtgtggagaagtgagttgcatctatgttaccacgttttttcttca
catataagggtcatgttaaacagttactaaatggctaactacatgatgtggggtgggcctgctgaaataaacacactcctccaggccAAAAACTCAGTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACTCAGTGAcatttccctc
tggctcctgctccttcacagtgggctggactcccaaagcgtctgctcctcgggctcctgcagtccacctcccaccgcagatcaggccatgcatgaatgtt
actacatacatttgttttcattgcaatgcttttaagtcctcttcttgcccttcccactcatccacagaatcttatttgctacttccaacgcttttcttaa
ataaaataattttataccccattgcttggtggtcagggaaaaattctaagctacatccttcaaagtttgataaatttcctgcatatagcatagctccaca
aaataccctttgcacagtgaagcaataaaagaacaccatattgttggttaaatactttgttatctccatgctttgct UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:HIVEP1:NM:002114:3/9
0 chr1 114186965 114187255 1000324 0 + PV30B; RIP_Alu_chr1_114_01 GGAAAAGAGTATGGCTGTCT AACCCAGAAGTGGAATTACA SINE Alu Ya8 aatcccagcactttgggaggccgaggccggcggatcacgaagtcaagagattgagaccatcctggctaacatggtgaaaccccatctctactaaaaatac
aaaaattatctgggcgtggtggcatgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcattga
gccaagattgcgccactgcactccagcctggcaacagagcgagactgtgctcaaaagacaaacaaataaacaaaaaacagaaaataaaaagtgttggcca
ggatgtagagaaattggaatccttgtgtactgttggtgggaatgtaaaatggcacagctgctatggaaaagagtatggctgttctAAAAGAAAACTAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAAA
CTAAACatagaattaccacatgtaattccacttctgggttatacccaaagtaattaaaagcagggatacaaatatatatttgtatacccatggtcatcac
agcattacagcagccaaaaagtggaaggaactcaagtatccattgatggatgaatggataaacaaaatgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtg
tataaacatatacaatggaatattattcagccttaatgagtaagaaaattgtgacacgttacaacatggatgaaccttgaggacattacgctaagtgaaa
taagccagacacaaaaggacaaatactatatgattccacccatatcaggtacctacagtagtcaaattcatagagacagaaagtagaagga UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:PTPN22:NM:015967:11/21
0 chr12 12908916 12909215 1000325 0 + PV1C; RIP_Alu_chr12_012_01 TAAGCCCCATAAGGAATGAGACTG TGTTAGGTACTTTGCTTGGTGCTG SINE Alu Ya8 gatctttggagaaaggcatggcctggcaggctctgcatggtgccacaggcctatctagctcctgtctctcctgcatttccttccctactggctgctttca
ctctttaagctcctgcccaccccagggactttgcacatgctattttttctacctcctctgctcttctgccctctttatttaggcaacttctactcatcct
tcagatcccaggtcaagcatatccttcttcagggaaggtttgcttgacatcgctgatggggtcaaatcctccttttagaggctatcaccacacgctgcat
ctgtattttataacacttgtcacagtattatatttgtctggttctttgattgatatctattactctcactagattataagccccatAAGGAATGAGACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGGAATGAGACTGaatctatttttactcatcattgtgttttcagcaccaagcaaagtacctaacacataataggcactcaatgaacatttgtggaataa
actgaggaataagtaaagacagaagatctaaaacatgaagggggctacagataggaaagggctggggagggaagaggagatattcaagagagggaaacga
aaccaatgaggctacttgtaagtgatcttgcagtgtaaatgagctgaacacaaacaaacccccaaagcggcagtccatagacccatagaaatggtgacag
tgcctgctgagttggttagcctaccccacacttctattcattgctaaaggcatctccacatatagataaccgctcactaaattttgcttttgctcaggaa
UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr5 9830994 9831290 1000326 0 - A6; RIP_Alu_chr5_009_01 ACTACTCACCAGCAAAACACCTG GCAGCTATAGCCTTATGAAAACA SINE Alu Yb8 atgaatgtcactgaactaaataatcgattgtcaatgtagacaaaacaaccttgtattggaagaagatgccatctaggactttccaagctagagagaagac
aattcctggcttcaaagctttgggagacagattgattatcttgttaggggctaatgcagctggtaactttaagttgaagccagggctcatttaccatttt
gaaatcctagggcccttaacaattatgctaaatctactctgcctgctctgtaaatgaaacaacaaagcctgaatgacagcacatctgtttacaacatggt
ttattgaatattttaagcccaccatcgagatctactgtttaggaaaaaaagaaacttttttcagaatattactactcaccagcAAAACACCTGGCCTCCC
GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT
GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAA
ACACCTGGCCTCCCaaaagctctgatggagatgtggagatgtacaaggagactaatgtcttcatgcctgctaacacagcatcaatctgcagcccatggat
caaagggtaattttgactttcaagtcttattatttaagaaatgttttcataaggctatagctgctatagatagtgattactgtgatggatctgggcaaag
caaattcgaagccttctggaaaggattcacccatctagatgtcattaagaacacttgtgattcatggaaagaggttaaagtatcaacattaactggagtt
ttgaagttgattccaaaactcatggatgactttgagggattcaaggcttcagcgaaggaagtaatggcagatatggtgaaaatagtgggagaactgg UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:LOC285692:NR:027112:4/13
0 chr8 42159064 42159065 1000327 0 + TPA25;1104685157154; RIP_Alu_chr8_042_01 GTAAGAGTTCCGTAACAGGACAGCT;NA CCCCACCCTAGGAGAACTTCTCTTT;NA SINE Alu Ya8 gtggcaccagggcttggcatccccatcaggattcctaaatgataagagagtttaaggtttcctttttatcttcttattttttaatttttgtagagatggg
gtcttgccatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgctgggattacaggcatgcaccaccac
accaggccaggagtttaagattttcaatcccattttcagccacatcacaggccatgtaagagtagaaggagactcagtcaaccaatgaaaaccactgagc
tgggagggaggacaccgagttcatcttgaccttgcagcacacccccaccctaggagaacttctctttaactttgttacccagtcagtaatGTAGTGTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGTAGTGTTCTaatctcatagggttgtcagacagaactgtgagctgtcctgttacggaactcttacaaatcattgcaataaagatgtcaggagaacagct
gaggactaaatggttacaggccaggacccttaacttgggatttaggttggaaaactggtagaccttgcttttcacaatatgtgttattctagcaagtgaa
gaggttggattagataatatccatgggtgcttcccacgcactgggtctgtcatgcaacttgagacattggatcttcccccgtctcacaccctaatcccac
gttctgccaagacctgaaccccccacccctgtgctacctaccggcagtaattatgtttgcccaggcccagtgcctgggcactggggttctgtgctgtgta
a Other;Venter - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA;NA NA;NA NA;NA NA;NA Myeloproliferative disorders;NA intron:PLAT:NM:033011:7/13
0 chr19 44791223 44791519 1000328 0 + HSC4N5; RIP_Alu_chr19_044_01 CATCCTTGGCAACTAGTTCCACTCI ATCATAGACACGGTGTCCTGATCAI SINE Alu Ya8 tccaactcaacagcaggactgggtgaacacatagaaactgggaagctgtctccttcaatacctcaccttcccatgcatgacattaatttcctaaaatcag
gagagtctcatggttctgggacttaataaatggtgattggctttcaccaaagaaagcctttcaaaaggctcatggagaaggtgcacagcatcacaggact
tacctttgaatggcagacagtgttacttctaaggttttacattgatcaaggtgagtcatacagacggccctaatcaaaaggagaggactccacaagctgt
ggttattgtgactgtagtcatgaggggccatccttggcaactagttccactcagaactagttcccacataccgaaaacactaaccatgtAAGGAATCTCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAG
GAATCTCTgaaggcattacaattgcaaaaacaggctcagagtaaagtgcaatatcttatctgatcaggacaccgtgtctatgatgtgactacaaattatc
acttgcaatcccctgcaacatgtgcaccaagggggcacattatctgctttatactaatcaaagaagactgaacgagacaggaaaagtgcaatgaacacat
atattttagatgggcaaaaaaaaaaaaaaaaaaaaatagacagcagtcactaatccatatttttgctgaaaccaaccagaaaactatttacattttctct
gggaatgtttttctgtagcacttgtccccaccctccattctcagtttcttggagttcctaccaagacggcagaatgacagcccttttcccactataa UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr11 29704862 29705179 1000329 0 + 5F4; RIP_Alu_chr11_029_01 CAAATTTTCCTTCAAGAAAATAAAAC ACATGTATGGTATGTAAAAATTTAG SINE Alu Yb8 tctagtccacaggaagacctgaaccactgtcgccttcacataggttaactcggaaggcaaaggagctttgcctaagctggtggaagctatcaggacaaat
tgcaatgacagatacaatgagatccaccgtcactggggaagcaatgtcctgggttcccagatctgtggctcacattctcaagctcaaaaaggcaaagact
aaagaacttgccactaaagtgggttaaatgtatgctgttgagttttctctacataaaaaaaattaaactacaaattttccttcaagaaaataaaacataa
attattgtttttataaattacccagtttaaggtattctgctatagtgggacaaacaaactaaaacaaaatatgcctactattAGAAAATACTCTTTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAATACTCTTTTTTGttgcatatacatgtagtccagttgaaatatgttacaaagagaataagtgtttcctaaattttca
cataccatacatgttagtttgccatacacataagatccatctatagatctccttaatttccttaataaattcagaagaactttactgaagtacatatttg
gtgccactatggatatcaaataatataatgctgcatgatgatgctgcataactcctacttattgaacatttataatgtaccaggtagtatgctaagtatt
ttgcacataatttaactcttgcaccaacactggaaagtaggtagttcaccccatttttgcaagaaaactgaatcttagtaaaccttagtaaagaaagtga
tacagaatagaattttaa UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr14 80162280 80162590 1000330 0 + A3; RIP_Alu_chr14_080_01 CCCCAAAGATAGTCAGGTTCTAA CCTCCTCCATTCTCACTCAATC SINE Alu Yb8 tccttctttcctctttttcttttttcttccttatttcttttttctcccttctttcttttttctctttctttcctttctttctctctttcttctttctttt
tgttactcttgtacagaagaaatttttaccatatcagattagttctctcattcatgccaatatcaagtgagcctgtattactctttaaaaagtcataaaa
tactaaatggtaacactggtatattgaataatcagccccaaagatagtcaggttctaattcctggaatatgtgaatacataactttacaaggcaaaagag
actttgcagattttaaggatcttgagatgaaaaaattagcatgggttattcaggagatccctaaatgtaatcacaattgtccttattAAGAGTGAGACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAGTGAGACAGgggagacttgaccacatagaggaaaatgcaatgtagtgacagaagcagagattggagtgagaatggaggaaggggc
cacaacccaaggaacatagacaaccactagaagctgaaaagggcaggagaaagaattctcccctcagagctttcagaagcaaccaatcctgccaacacct
taactttaggccagtgaagccaatttcagattcctgacttcaagaaaataaacctagaccaagatggtgaaactccgtctctactaaaagtacaaaaatt
agctagatgtggtggcgggcacctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaaga
tggtgcaccat UCSC - Batzer MA, Rubin CM, Hellmann-Blumberg U, Alegria-Hartman M, Leeflang EP, SternJD, Bazan HA, Shaikh TH, Deininger PL, Schmid CW. Dispersion and insertion polymorphism in two small subfamilies of recentlyamplified human Alu repeats. J Mol Biol. 1995 Mar 31;247(3):418-27. PMID:7714898.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:C14orf145:NM:152446:18/24
0 chr10 4624812 4625120 1000331 0 + 238920; RIP_Alu_chr10_004_01 NA NA SINE Alu Ya5 tgttgcattttggcaaatgatatatctgcatctaataagattatcacatgaatcttctcttttgttatgtcaagatggtggatttcattgctttatgaac
aaacacctttacattcctgagataaaggccatttggccatgacacatttttatttttacaaattgctggatttcatgttccaatttaacgttttgctact
tatctgtttaaactctatcggtctcagttttgacctctgtaaaatgcattaattgggctttaacaatggtatttttgtaaaacaaaaatttactttacaa
ttatttgaaatataatttttctatggtcttttccagttttaaattaattagtttgaactatataatattgatattcaatctctattgaacAAGAAAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAAAGAataatttcatacagttcagcttaatagattaattctaagattttattgcagaaaatctctttctaccttgaaaacaggagg
taattttatgaacttgatttttaatcttagctggagtaaaattgtggtagaacatacactagctttgtaatcttgtgcatgttactgtataacgatcagt
ttatttgttcataaaatagggatagatagaatatctactttgtgggatagttgtcaggaagtgaactccctggcacatgccttacacatagtaagcactc
aggaaatcctaactatcttttatattatcattatgattatgaagtgctcttgtcctttagaatatcctggacaagatggttaatgggctgtacatctatt
attcaggta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 20172023 20172024 1000332 0 + 16184; RIP_Alu_chr10_020_02 NA NA SINE Alu Ya5 ggtgaatttgaaggcagctaaacacattgcaaatttagaagaaggatgtaggtcttaacttgtggatagacttttcctcgtatatgggttaatgaatatc
cttctctctcttgtgaattcttattaatataggccataaatggagctttcttttttgctctataaagccttcttatcttttgacgtcatgtttatattat
ctgatatgatgtaaacaaatctgacaggagtaactaaaaaaagcagtgcacagctaaatgtattcagtgtttattggctgatatgttttccccacatagc
ttcaatttaaaaatatatttttatcctttattacatatcctccttcttagtaatgcttttaacttatgtcatatttttttttctataAAAATTTACCGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATTTACCGGAacaacgatctgccactgtatctacagcattttggtttcccaccaaggtagttttaaatcacatttagctca
attgacttatttatgaatactgtttgaaaacagtgtttatgtggtaaacatgcttttcattgctgcattttaaaagataaatgcaatggaatacttattt
ttttgtttcacaatttaaagctaaggtattaatttgataattattcaatgtcaatttatccaatatcgatttattctcatgttctttatttgtaaagttt
ttctgggtttccaaagagtctacccctgttatcgtaggattcctccataaggacaccatccacgggtaccactgagagcttctggctgcattaagatatt
ttctagtgaagaagaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PLXDC2:NM:032812:1/14
0 chr10 25075198 25075288 1000333 0 + 12468; RIP_Alu_chr10_025_01 NA NA SINE Alu Y gattgaaaccattctggctaacacggcgaaactttgtctctactaaaaatacaaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctact
caggaggctgaggcaggagaatgacgtgaaggcgggaggcggagcttgcagtgagccgagatcgtgccgctgcagtccatcgtgggcgacagagcaagac
tccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaactgaaacaggggctgagcatggtcgctcatgcctgtaatcccagcactttgggaggctaaggtgg
gtgattgcctgagtccaggggttcaagaccagcctgagcaacatagcaaggcatccgtctctaaaaagaaaaaaaaaaaaaaactgaagcagctAAAAAA
AGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAtgt
atgtgggaagtggctggtacaggagaaagttgggagcattaagcagatgaggtgagggggagaatggcctctataacacgctgttaccatcacttagtag
gtatgggattttgaggtaaccccacaaaggctaattcctcctaaaatccgtgtctgcagccttgctaacagcatgtgacaaacagcactgagcatagcca
gctgtagatgatacatctgagagtcttttgcaaacagatattctttttcagtataaatataattcttgattatagcaatgtataaaaatatacgatcaca
atctgtaaacaaaacaaagcaacaacaacaaaaattcacatgcatttggatggttactagcaaaaaaaacaaaaaacccagaaaataacac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 25138096 25138425 1000334 0 - 238040; RIP_Alu_chr10_025_02 NA NA SINE Alu Ya5 ataaaaataaaaaaaattttaaagccattgcacagttttctctgctgctggaataaatggatcttctgctagctctaattgccctagtaaaagaatatta
tctttgaccactgatcctaagaacccaaattccctgcaattcctttgctaaaggaaatccctgtcttctctccatttctggcccctgaatgctatttttc
ttacaaccaacaaagaagagtataaaggtgtttatggaaagagcatccctgtgagcccccttttcctgggacagttattcttttcccaaacagagaaggg
ttcttttaataatcaagttaccgatttattctaaactctcccctcccaactgatatttgaaggttggaatggcattaaaaataacatcacatAGAAAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGCTaattatgttccacttcccacccgtccttcttgccaagtaatcttgggttttgccaccttgtt
tttttattttttgaacattaaaaaacagaagaagacgagggaggcagcagagaatgggaacagattaggctttaaaatagaactgtcaagatggttcccc
gcaggctctgttctgatctagcaattggtaacttcagatccacttgctttcacaagcgtctggatagcagtagattgagcagcaattaagggatagagca
ttaagccgaatgaacttacttttctagcattaactatggcttttcatggtttccagtgaaaaataaatttaaacaaacttataaaatatttacgtgaaca
aacaacatgtgaaaaaacaaatttatagaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 29142535 29142536 1000335 0 + 16220; RIP_Alu_chr10_029_01 NA NA SINE Alu Ya5 ggcccacgcttctcattacaaaaatatgttctgacactctgagtacttgtggctgggctggagaggcattgggccctgggatctcttgccagggagacaa
cccccctgcaactttgtgctaggtaatcttctgtcccctcttgtgtctcttctttccagtctggaccttcaaattggagggggtgaggagaaccctaaag
cccaggcatcgatggggaattctggagacaaaagctaattaaagttcatttcaaacctgtggggagaaaaattctagacataaacctaatgtaaagaaac
acataaaattttattggaagacaaaagaaaagtggaatgagcacacatatcatgtttttggatggtaagaataaaaattgtgaaagAATAGATGATTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATAGATGATTTAGattcaatgcaacctcatgaaaaattacaaagggattgttttagtccattttatgttgctataacaacaccacagactgggtaatt
tataataagcagaaatttgtttggctcatagttctggaggctgggaagtccaagagcatggtgccagcatttggtgagagccttggtgctgcatcatccc
atggcaggagttgataggacaagagagagggctagagtaagacagggaaggtgatccaaatgtattcttttatcaggaatccactcttgagataactaac
ccactcctgcaataacttcattaattcatttatgtagtgccctcctgacctaatcacctcttaaaggtctcatctctcaacattgttgcactgggcttta
a Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 33532661 33532935 1000336 0 - Yb8NBC157; 265; RIP_Alu_chr10_033_01 TATGGTTCTCAGCCATCACG ATTCTTCCCCAAAGGGAGTC SINE Alu Yb8 aaagtctggattgcaggcctgagtggcatgtatgttatttgcacttggtgacttcttagttattactggtgtgtatctttgggccgttgaagaagttgaa
acttggctctgtttctccatgtgccgtaactctgcttggtgtttcagcaccattcagtgtcaaatttttactaagaaagcagcagttactgacacattcc
tactggcgagaagagaacaggccccagccaccaacatcttgtatggttctcagccatcacgagaactatccattatctcaagtcttgtaaagtgaaacgt
aatgccaaaaactgtaaaatattaaacagattgcaaaaatgagtaacaggctaaaaaaaatatctgaacgaaatttaaaggacttcAAAAGCAGTCTTTG
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTCTTTGattaatattgg
atacctttcaactgcaaattcaaagatatgggaatacctgtgaacagtggaatgcagtcctatgagagttcatgtaaaatgaccccgggacatctgagac
aacttctctcacacacctgccctggagagagggctcacagtttgagaagctacttacagagaaatggaatcactgtttttttagtttttttgtttttttt
taaaaaaacactattgcactaaatgtgaacgttgactccctttggggaagaattataatataaacttagcaaacatagtcaatactaagaatataaaaga
atttatgacaagtgagtgctctaacaccttgaaaatgaaagggaaaacgtttcaagcaaaatctctgtcttcaaa UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 712 423 NA intron:NRP1:NM:003873:10/17
0 chr10 34724490 34724799 1000337 0 + 12346; RIP_Alu_chr10_034_01 NA NA SINE Alu Yb8 tcccatgtagctgggattacaggcacctgccacaatgcccagctaatttttgtatttttcatagagacagggtttcatcatgttggccaggctggtcttg
aactcttgacctgaagtgctccacctgcctagacctcccaaagtgctaggattacaggcgtgagccactgcgcccagccgatggttctcatttaaatcag
gaggaaatgaaatgatatggatgaaataaaaattgattccaaggtaatgaaacgttttaggtaaatgtttttctactaagaaaataatttaaaaaaagaa
atcaccaaagtaatgaaaccgtgaacgaatatagatgaggatcagttaactttatttttgaataacatatacaaggaaataactcAAGAAAAACATCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAAAAACATCATCatggggaagataatattgtctctctacctatttgtctctatttctacatatcagcaggtagtcaactaagacagg
ggttggaggacgagctaattgtcattaatgcccctgattgaaaaacattcaacctagtctaaaaaatagctttgaaagtaagcagtgcaagattcttatt
ttaaaaaacttaagccagccatggtggctcacacctgtaatcccagcactttgggaggctgaggccggcggatcacttgagatcaagtgttccagatcaa
cctggccaacgtggtgaaaccctgtctctgctaaaaattcaaaaactagccaggcatggtagcatatgcctgtagtcccagcttctaggaaggctgatgc
aggagaattg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PARD3:NM:019619:7/25
0 chr10 46508392 46508709 1000338 0 + 239115; pAlu10-46955146; Ya5ac1982; RIP_Alu_chr10_046_01 GTGTGTGGAGGTGCTTCAGA GAGTCCTGGAATTCCTGCTG SINE Alu Ya5 ggggtggcaccccagcattcctggctttctggggtccagataggctggcaagagctgtttttgcatccatttgcatcgtgaagactggcattttgatact
tcagctgtttgttcctgggagaattctgagcacagattccagaggtcacagtaagccttgcagcttgagctgaaagatgccagagccggagatgtctgct
ggcagcaggcagggttcattctggtgacacagcaacagatgcctggcctgggaacccagggatttcacctccaccagtgagaccacggggccactgtggg
gtgagggaaggagcgcttggagtcagagctctagaccttggtcaactcttcacctctgtgagagatggtgtgtggaggtgcttcagaagtAAAGAATTCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAATTCTgtggatgcaaagcagtgggattactgttagatcattagcgcatccagctgaagacaatagatgcagtagtct
tggcttacagccctctgcagcaggaattccaggactcacttcctactccatcccttttctctatcactgtgtcttccaccttacatggaaatcagcctgc
aagttcctctcctcgatgagatggcaagcgccttgcaggtgaaatccataccatcatggggcttgtgtcttacatgccatggacaggccctggcacaagg
agagagctccagggaagttttccatggtgggttgatggtaaaggtgccactcactgctgaatgtttggtgctggacaggagtccagcatgggaagggggc
cagggctcaggctcctgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 470 148 NA downstream:PPYR1:NM:005972
0 chr10 49587177 49587485 1000339 0 + pAlu10-49809478; 239156; RIP_Alu_chr10_049_02 NA NA SINE Alu Yb8 ccaacttgcaaacactgctcctgtgtgcacttagagatgagctcttgtaagcttggggacttaaagggtcattttgagaataaaatactctaaaaatatc
aagtataaaccaaataatgcttagaatgaggaatctatccttacagacccatcatagaaggaagttctagatatagaattatgtgcctctacaaatacca
gtgaactatttacatctcttttatgtatgcagccttttaaaagagaagcagcaacaagtgaaaaaaaaacaaacaaacaacaccccccccccccaaacag
gctttagtgtgaaagtttgcatttcaacttgacgtctagctgcctgtatgcctttggcccagtttccttacttacctagagagaatAAGAGCACACATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAGCACACATCTgtctgtgtggctgtaggagagtctgtctgagtcttgtgtataagaccccacagtgctgggcacacactagattgtga
acttgtattaatcacatctaaatctgaatcccctttttaaaaaggcttccttattttagtctgtttcagattcttaggggaaccattttcaatagaaact
gggctgagtgagtacagtaccttatccacagccagaatcatcaggaagtgatgtgacaggaatgttcacttctatttgttctgaattcagatctgctttg
ccacggcatggaggcagaagatctttcaaaggctgaagacagaaatgaagacccaggttccaaaaatgaagggcagcttgctgctgtgcagcctgatgtc
ccacatgga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:WDFY4:NM:020945:1/62
0 chr10 54111216 54111520 1000340 0 - 2730; RIP_Alu_chr10_054_02 GGGAGGCGGAGCTTGCAGTGAG CAAAGAGTGAACTAGAATCCAGATC SINE Alu Y cacacaaaaagtaacagaaacaagataaagtcctgaggaggatccaggtgtaggatcccatctttgctgacactaactttgctttcccatgttcaagttc
tataattcaataaatttttgagtaatccagttagatctggatttttggtaaatgtatcaaaaatgtttactattacaatataataatgtatatttagaag
ataatgaggttgaaagattaactattttcctcaaggacatacatgtagtaagtggcaaagagtgaactagaatccagatctttctgactgtgttgtcttt
gatcttaacaaataactgtattgtgaaagctcaaggacagcactgaagttttataaatgggagagacatttcagtgggatgggagtttAAAAGTAGTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGTAGTTGAgtgtgctcttcccctcctcttttgttttgttttgtttgtttctgagacggagtctcgctctgtcgcccaggctggagtgcagt
ggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccggagtagctgggactacaggcgcccgccaccaaa
cctggttaattttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtaattcgcgcgcctcggcctc
ccaaagtgctgggattacaggcgtgagccaacgcgcccggcctgttttcttttatttatttagtttttcagccccctgtcctctcttacctttcagaaca
acttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr10 56187045 56187346 1000341 0 - 10911; RIP_Alu_chr10_056_01 NA NA SINE Alu Yg6 aaataatataaagcaatgaagggtcttacagtgagtttttcaggcatggctgtattcagagacccaataagacctcctgaggaatctgtttcttttgatg
ccttttgcttgcatcccatgatgtttggctttaactctcagtcaatatttgtccatgcagctatatattaaggctgctgacaactcaacctaaattcata
attgcaattactaaggaaaggagcccttctctctctctctgtctctctctcggcataaataaaactttaaggaataatctaattggtcttatttaggtct
cttacttgtcattgttggtgggcatagcactgtgactaccataaagaaggcaaatgaagtagttttctaaaggaaagccaatttttaagAAGGTAGAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGGTAGAATTctgagcaagccaaaaacaggtgatatagacagaaatttctcatttcttagcagtttggcatacacatgtatgtttctaataaggaca
gttacaaattgtccccagctaatagaacacaactatcttaactacaactgaatataccccggctggaagcagaacattcataaagcaaatttttatattt
ctcctttatatctcatgctatcaaaagacatttactatcatgttttttgagacatatggtaatccaattgggagcttgcttcataaagccaagcatcctc
tgtcttcaaatacaataataggaagtccaaatactaatcacgttaagacacagctccctcctacttaggaatttcatttttattgacataaattgcactg
tg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PCDH15:NM:033056:1/33
0 chr10 57644640 57644641 1000342 0 + 3538; pAlu10-57867033; RIP_Alu_chr10_057_02 NA NA SINE Alu Ya5 acccgtgacagtattgtttaaatggtaatgtctgtaaattggttctgagataatttcaagtaagaggtacaatctcagtgatttacaaaacaaaaattta
tctgttcttcatgtgaaatccaaggcaggattcttagttgggtagttttcgtacttgctatcatttagataagcctaagggactttgtttcaatagtctc
aaaatccattcctaagcaaattattctagttccagttggtacaaatttgtcatagccttcatttctttgatggataatctctttcctcccatgtggggac
agtgttactttcatcaggctctgccattacctatcaattataatctagaaccaatgaagggagacaggggcatcttttcaggggaatAAGAATTTTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAACCCCGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAATTTTTTT
Ttaaatgaagcttttgtatagtctccacgccataggaagcagctatattttagcaagggaaagtagggatttttaatctcatagagttcaaatgtattct
ggtgtttaaattattatgcatttatcttcctgtattaaaataagtatttcatgcaccccataaatatatgcacctactatgtacccataaaaattgaaat
tgactaaaaaaaacgaggggctgggtgcagtggctcacacctataattccagcactttgggaggccaataggacaggtcacctgaggtccagagtttgag
accagcctggctaacatagtgaaacaccatctgtaaaaatacaaaaaattagcctggcatggtggaatgcacctgtagtcccagctac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 78470918 78471223 1000343 0 - 54645; RIP_Alu_chr10_078_01 NA NA SINE Alu Yc1 actggctgccagcaagatgccttttaatacaagataagcacaagccgttctaaagagccacttcctgttggcggggtggcttcctctcatcttcctctta
cccatgcccccactggaagggaagcctgagaggctgcagccaaagacacacagcttgccctccttccctcagggaggcctgtgagatccctaagctccca
tagcggctcaacgttctccttgtaattcaccagtttctaaagactgactccattgtaagccggtagcagtggctcatgcctgtattttgggagcattttg
ggaggccgaggcaggcagatcacttgaggtcaggagtttgagatcagtctggccaacatggtgaaaccctgtctctaccaaaaatacaagaAAGAATTAG
GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAA
ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAATTAGccaggcatggtggtgcacacctgcaattccagctactcaggaggctgaggcaatagaatctcttgaacccagggggcagagattg
cagtgagctgagatcccaccactgtactccagcctgggtgacagagcaagactgtctcaaaaaaacaaaaaagaagattcactacattgtgaaatccttt
cagagatgcctagcatgaagagggttgctgggaaaaccagctaaacttgactacttagaaaaaatgcatattttaatgaaatttggagcaagacctctct
gaaactacattttacttttgtgatactccttttgaaatttggagcaagacatctctgaaactaacattttaccttttgtgatattccttggggggtcaga
aaaatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:KCNMA1:NM:001161352:14/28
0 chr10 84390753 84390885 1000344 0 - pAlu10-84531890; 30847; RIP_Alu_chr10_084_01 NA NA SINE Alu Y aatgtttcaggctcatcttatacaccagacctaggattagccatttgtctaagaaaccctgcttttttgtttctttacttgcttgtttctttacttgttt
ttagtgaaaaaatagcattgcaagcccataaatagtgtgggaagggtggtctgtttaatattttaactagaaatggaatatatgagacattatatacaat
aagacactttgtgaaagaaatacagacatacacaagcgcacagatcacaaatataagcttagaaaactgacaaaaaagtttctaaaatattcacaaagac
tttatttgggtagtttagtgattagcaacaattttattttcatatttatatgtatctgtatttttaaataagtatacattacttAAAAAACGACAGACTG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGACAGACTGaaaaatttaaagaccctaggttttgtagtaagcattttatattatgagaaa
caaaattactgcaacaattcctatcaaatcgtacaagttgtcctcaaaagaatgtaagcatttgttaatatttgcaaggcactttaaaaataataggcct
atgaggcattatttcatttagtttatgacatattaataatgcaccttatttatctaccacttgaagtagagcttaatgaattaacataatatccaatcat
gtttaatgaagagctttaaaattactcatctaaatgattgtcataattttttaataataattatatttagcacttttattgcatttttttccttgaaagt
attttgcaaacacctagttaatacttaatacat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NRG3:NM:001010848:2/9
0 chr10 85616213 85616404 1000345 0 + Yb8AC1538; 7773; RIP_Alu_chr10_085_02 TACTTGGCAGGGACCATCTC AACATTCCTCGATGACAGCC SINE Alu Yb8 agccagactttcggtggctccccacagctgaaggataaattacaagctttataacctgacacacaaggctccagaagatcaggtcctgcctgtcattccc
aagcacccctacagaaatgcattttggctcattgaactagacccatccctaagtagcttctgccccagtcagtgactccctcctccatgtgcccagctat
gagacacacaccactctgctctgtaatgactcaactacatctgtgtttctgctacttggcagggaccatctccccacatccactgtgcttatcacagtgc
cagctcatagaaggtagaaaatacagcacaaaacaaatcagtgtgacctcagagtggggctactgaatttattgacataaggaatAAAAGAGACCTTGGG
CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC
TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGA
CCTTGGGgacgagcttgaactttaccctgactgcttctttgatctcagcctataaatctttcatagaaattctcgtcttccccctcctcatggtaggagg
gtgacaggtgcaaccggctgtcatcgaggaatgtttatgaatgatgacaagaacccaggacttgaggagtgttacttttgggtgttattttttaactcca
gaagacagcacctatgaaaaatattttctgatttcactgcctctatgcataaataaataaatacgaggcaacttgatttagtggaagaaccgcagacttg
gttgaacagatttgatttcagattctagctctaccacttaatggggaagtagggtgataggctataaaattgagacattatccactagccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 483 276 NA intergenic
0 chr10 99098282 99098598 1000346 0 - pAlu10-99239422; 2521; RIP_Alu_chr10_099_01 NA NA SINE Alu Ye5 ccggctaattttttgtatttttagtagagagggggtttcaccgtgttagccaggatggcctcgatctactgacctcgtgatccgcccgcctcggcctccc
aaagtgctgggattacaggcatgagccaccgcgcccggcctcttcttgcacatttcttattctctctctctcccttacacacacacacacacacacacac
acacactctctctctctctctctctctctctctctctcattgggcatttattctgagcaaaggacttccaaaaagacatttggtgaggggtgagagatag
agtagtaagcaatgcaggcaggatccttgccttcactaagtttatgaggagccagaacaaataaataaaaaatttaataaaacacatgattAGGATAGTG
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGATAGTGctatgaaggttcggcatggatatcatgctgggtcctggtttgggcaagtgaagggagccatagcaggagggcct
cttggagtggcatttagctaagacctggaggatgagtaggctttagggtggcaaacaaccaaggctcctacatttccagaaacccgggaccaagggcagc
agtcacttgcagcttggaaggtgggctggggctggactcatgtggaagctttgtttgcataccaggcttactgtttctacttagactgtgtttatgtgtg
tgtgcagttggggttgggagcattgctgttaaaagtgcctcactttggctgggaatggtgactcacgcctgtaatcccagcactttgggaggccaaggca
ggcagatcacctgaggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 105087530 105087826 1000347 0 + 4387; RIP_Alu_chr10_105_01 NA NA SINE Alu Ya5 ataattcagacttaagaatatcacatgttgattcttacaacaatcctttgagttgctattgtaacctccagtttagaaatacagaaactgatgatcagtt
cagagaagttacatcccaagggttacctactctgagttagtcttcaaaacctatactctttcaacataccatactgtctgtcttgggttatttcttttta
taatctactttacacatagaaactatagaacaaaaaggataagagtctatcttaagatcataaagctgggcacggtggctcacgcctgtaatcccagcac
tttgggaggtcgaggtgggtggataacctgaggtcaggagttcaagaccagcctgaccaacaaggagaaaccctgtgtctactAAAAATACAAAATTAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATACAAAATTAGCtgagcatggtggtgcatgtctgtaatcccagttacccgggaggctgagacaggagaactgcttgaacctaggaggcagaggttgca
gtgagtcgagatcatgccactgcactccagccttgacaacaagagaaaaccctgtctcaaacaaacaaacaaaaaaaccggtcaggtgcagtggctcatg
cctctaatcccagcactttaggaggccaaggcaggcagaccacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctacaaaa
aaacaaaaaaaaattagccgggcgtggtggcaggcacctgtagtcccatctacctgggaggctgaggcaggagaatggcatgaacccgggaggcgga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PCGF6:NM:001011663:6/10
0 chr10 107881538 107881539 1000348 0 + 12931; RIP_Alu_chr10_107_01 NA NA SINE Alu Yc1 ctgaattctagagagaagaataaatttactttaaaaagtacctggatcacaaaaaatatgtgagaaataaacagaatttatgaacttgtttagtatggaa
ggccatttttcatataataagtgcaataaaaagactaattttccaaaatattccttaggaatttattattttctgggtcttttaaggagggtaaatctgc
tttgtgtctgttaaagaattatgaattagtgtatacattatcttctcacgagtcatcagtctgttccacaagtagaatctttgatttggtgttatggatt
gagaagctgattggaaccacatagaacactgaagaatcgattggtgaggctgcctctgtggtcaacagagaggacaggggtgctgAAAAACGTGTGCTCC
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCT
GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG
AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACGTGTGCTCCaatactt
ctttatgcctttattgatcatgaatatgatatctggtgataaagattatgataatggtattgaactgctctcctttcagcaaggaaaagattaattccag
attgatttaaaaataatatattcttgcaggaaagcttatctttgacttaaaacacactaaaatttactgtattgctacattttttttcccagataagcct
tttgacggaactttctatagagaaatcaacaagttcatttggagaaactttcttaacatagtcacaataatactggtaggtgtcatgtcaataggtaaca
attactcatcatttactctattcgtctatgcatgtgcataaacttacttagtctttacagataccatctgaaatgtgt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 115499123 115499422 1000349 0 + 5030; RIP_Alu_chr10_115_01 NA NA SINE Alu Yc1 aggcttcggagtcaagacagaccagtctgatttctgtgtgtcacttactagctgcatgatccttagctagttatttaatctctctaaatttaaatttcct
cttttaaaattaggattaatagattttatcctgcaacaaggtagaattaaatgagatattctatgtaaaacaaaaatccccaataagtagtaggtattgc
catgccatataaactgttcggttgtgttttggttaagaggcagcagaactcaagagcatcttcatgacaggaaagcgcaattaacaaagtcatggaataa
ctcatctgatatttcagatgaacaggcgattgctttttgtgacaggtaattgataccttgtttacaggtcattggaaacaacttttAAAAACCTATGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTGCTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACCTATGCTTgtgtttcataggtatgtttgttttgcaagtttagtatttggtgtctgtgccagtttttgtttgcttttcagtttatatttcatggg
tttatctacagtacaaatagctttgttaggcttcttcctccaaagagttttgtaatactattggaaaaataatacaaaaaagcctagaatagggtgggtt
ggatgggtgggtaggtggagggacagacagatgaacaggttgctgatggaaagcacatctaactgtttcatcggtatcctttccaaaggaacacaagtct
tacagtaattttccctcttcccctttttggttaggtctctatattataacaataggctgtctggactttatagttcccaagtaagtggaaatcagcacaa
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 115851722 115852020 1000350 0 + 239100; pAlu10-14115992858; RIP_Alu_chr10_115_02 NA NA SINE Alu Ya5 gacagcaaaggccagtggctcatcagtgagaacatcatacctctgtcagaggggagaccctgagcagctcccgacacccacacagggctaggaattgacg
gtggcttagggtacacgtaagaggaacagcatccaccacaggacagtcccttcctcgcgtaccacccgggatccctgctccctgtcatcgccatactgtg
ttctctcagactgtaaggtccttgtcctgtctccctcacatggatcctttccagaccacgggcactctctcaggtcagcaggtccagctgcaatctggaa
tcagcatctaccgtgtggaaatgggagaggggacttggttcttaaaccaggggccttggcattagctacctttggtttttctccagaaatAAGAATGATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATGATTagttagataattataaacaatggggggggggggtagttttgtcgtagttagcaaattacattgaatgtaacaaaatcttaaaccataaagc
aaaacgtgctgggtttctgcttcctgtggtgacatgacatgaaagcccagctctttttccaggaggacacttctctgtttacaagactgcttgagcaatc
ccattatcaactctctccagagaggatacagctgaggcagctcaaattcagaaccttatttttaaagaactaaaaaaaaattagatcctttgataagatc
actcaagtatagtccaaactagcctcccaaattttggagtgccagcaattatgttcaatatctccccatctgcctccccccaaaagaaccaattaatat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 118255315 118255622 1000351 0 - 17678; RIP_Alu_chr10_118_01 NA NA SINE Alu Ya5 ttctggaaggtattgttttctgcttgtttaaaaaataatacacttaggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggca
ggtggatcatgaggtcaggagattgagaccatcctggctaacatggtggagccccgtctctactaaaaacacaaaaattagctcggtgtggtagggggcg
cctatagtcccagctactcgggaggctaaggcaggagaatggcgtgaatctgggaggcagagcttgcagtgagccaagatcgggccactgcactccagcc
tgggcagcagagcaagactctgtctcaaaaattaattaaataaataaataaatacacttaatcaagaggccaccacattttgcttAAAAATGTCATGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATGTCATGAGAatgtcaaaaacttgacgctactgctggagaaatgtttacacactatagacctgaaggaagatggaaaaagttttgct
gttcagttggcttctctcatgctttcagattcatttgagccaaggctgggttttggtttattacacgcttctgtgcctggtacttacgctgctattgtca
tctctgatttcccctctcactgaacaactttggagccactgattctttctagtgaattggggatgtaacaaacacaggaaacaaacacaggagtaacaag
aaattgtgcaaattaacgagctcaattgaagaataaacccacaaatggtgcgagaagacatcagctgagaaggcttgctactaagtaaaatgcttgctga
ggccaaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 123479179 123479484 1000352 0 - 3107; RIP_Alu_chr10_123_03 NA NA SINE Alu Ya5 gattgcttgagcttgggagatggaggctagggtgagctgtgattgcctcactgcactcaacctgtgtgacagagcgagacctttctcaaaatacacacac
acacacacacacacacacacacacacacacacacactcgttgcaatgcctatttccctggttttcctagaggatttttaacatgctatttccacggtcat
gtgggtttcacaagctggccctccaagccctctgaacaagctgcctcttcgtgtgatgtgaatttagctgagggagtcactggattcttcatacaccggc
attttcctttctggaatgctgcctcctggattgtaagtacaaaaacacaaagtgaacgtgatgcaaacgcaggaaagaaatgtctttttaacAAATCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATCTTCacaggagacatgctaagataaaagagcagaacactgaaggccccagtgactgaggggcccgacaagcacctcactttcgagcgggt
ccaggtagtggccgtcaagacactgcacccctctgcgctccaggatttctgcaacagtgaggcccctcctcaaaaggcagtttggttctcgcaacctcgc
gcaatgaggacagggccaggcattacccgctcttagtcctgagccattcactggctttgtgcccttaagaaagttcctactccggtcaggtgtggtggct
cacacctgtcatcccaacactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctcaac
taaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr10 128096476 128096776 1000353 0 + pAlu10-128147416; 15057; RIP_Alu_chr10_128_01 NA NA SINE Alu Ya5 ttaattcagagatgagcttgggaaggaagagagaggacaatttcaccagcagttgaatgactgctcatcattccaatccagcctctgccctggaggcaga
accagatgagagatgtaaatctgtgtatggttcccttgcttctcaaagcatgaccatctcctcatgctgagtaagagtctaatattttaaaggaaatacc
tcttgtacatcacatctcccatccatgccaacttcatctggtgctcagtcgatctgtttcagagctggaggaagctgtctgggtgagctgacctgtacag
agatatgttagtctgtcatcaagatgacacttaagggactttaaatagtgattctgatatcatcgtattctaattgcacctgactttAAAAATGATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATGATTACTaacccccacccacctctggcccctataaaaaggaagtcagtccagagcctgcctgctgcctacctcccagggccctcctgagaata
ataagtgtggattgggcatgagttttaaatgcatagggaacatctgttcattagccaggggactttttcccttagaaaataaagtaatggagaaatctca
caaaataaaaaaggggccatcaagccctaaaacctagtctcttaacatctttcatgacacagttgtcttgaaaaccaggccttgtgggggagtggggagt
aattttctggagttccatgagcatttcaagagctacgcctataggcctaggtcccagaggcccaatatgcccagggcagagagaattcaggatatgactt
g UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 129080298 129080299 1000354 0 + 238615; 19840; RIP_Alu_chr10_129_01 NA NA SINE Alu Ya5 ctctaagatctgcaccatcttgacccacttctacctgggccacttctgaacaactcgggcctctgggcagaagccctgctgctagatccagttcactttg
tgtctccttgtaagctctcggtccctctcacctgggtctgtctgagatccctacccactctcctccccaaggccccatgcctgtctccacccttccgctc
ctgcagatagatagcagtctggtttctaataaagtggcctctggatcacagcgtgaactgcttcaaagatgcccaaacctcagggattctcccatctcct
ctgcaggcgatccaggcctctcacctggcatgaggccccttagagtaggaatcgagcctccagatgtaccctctcatcacccacagAGAAGGCCAGATGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAGGCCAGATGCtccccaagcccttgcaccttcccatggtctgccccggcgtggaccggctgcttcttgctgctgtctcgtgtgacggctgccatgac
agctgccttcctgccttctgggcatatttcactgctctcaaactttcgtggcttttggagttcaccggcgaatcttgttaaaatccagattttgattcag
ctggtctggggtgggcctcgaggctctgcatttctgagaagctcccaggtgatgtcccagctgctccagggaccatccctgagtccccagggcctgtgct
gacttaagctcctgagagcagaggcagtggctgtggctgccacctctggatctccctctgagggagctgtgccgtggcctgggctccactccattttttt
Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DOCK1:NM:001380:38/52
0 chr10 133299085 133299398 1000355 0 + 13306; RIP_Alu_chr10_133_01 NA NA SINE Alu Yb8 tggtctggggtcagagcctgcgactggtccggcacctgatgccactaggtactcatgctcttcaggtctttcctcctctaaaagtagaaaaaagaccaga
ctgtatcaaggaaaaaagcataggaagagaggaggagaaatgaactcaatcagtagccggcaaggtgcctggcacactgtaagcacctgctatcagcaag
aagcagcaaatctaaaggagagcagtgcgacccccgatgagggcagagcccctctccctgttgtgcagactttgcatgagctataacaaaaagcgcctta
catttcggagtgagaggactagagcatgggcctaatctatttttaaaatgaaaacatcattttaatgttgctattttcacaaatAAAACTTGTATTTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAA
ACAAAAAAAAAAAAAAAACTTGTATTTATGggaaaaggtgtgcatgctttctcttttaaagatgaaaaatctctctttctatttgtagaagctgtgcacg
ggacgccaccccgccggctcctggaacccgaccgtccagagcgcctcattggactgcgctgagcccagtccacctgcaccactgccgtcctcctcgctcg
gccaccgttggttaccatgggaaccatgaccgcagccagcccccgaggcgagaaggcctcttcatcttgccactcgggtcggcctcccatttccatttcc
agagagctcgctgtcggctgcggggggctttccatggccctggtcagccctccccactggtggaaaccagtttccatagcaacaagaaggtgggcagagg
gcagaaggcagaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr11 4759112 4759408 1000356 0 + 540; RIP_Alu_chr11_004_01 NA NA SINE Alu Yb8 tgtaaatttacatatttaattacataactatatatgctatgtaataatactcagcaataaaacttgatgcatgaaataaaatggctgaatttcaaaagta
tcatgcaaagcaaaagaagttacatacagagactatatgtttccatttatataaaattctagaaaagattaaagtataggagtttacagctccagccagg
ggctgggggtagaaaagagggcttattttatacaggcataagagaatattttgactaatgaaagtgttatctattttgattgtggtgatggttgtacgac
tgcataaatctgatgaaactttgaattctgtacacaaaaaagggttaattattgtatgtataattttatctcagcaaacctgccttAAAAACTGATTGCA
GGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC
CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AACTGATTGCAtaatcaagtattaaactataattttaatattattttaaaaccattctgattatatagtgttgtataaaataccaccctgatgtggtttg
tctctgtgtccccacccaaatctcatcttgtagctcccataattcccacctgttgtgggagggacctggtaggaagtgattgaattatgggggcaggtct
ttcccatactgttctcatggtagtgaataagtctcccaagagctgatggtttgataaggggaaaccctttttgtttggaactcattctctatttgcctgc
tgccttccatgtaagacatgacttgctcttccttgccttccaccatgattgtgaggcttccctagccaaatggaactgtaagtccaattaaacctct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr11 5063545 5063787 1000357 0 + 238598; RIP_Alu_chr11_005_01 NA NA SINE Alu Yc1 tcccactgtttaaatggccctgaagtgtaatgctgaagtgctatcaagtttttccaattgcaaggaggccatcttgtgccttatggagaaaataacgttg
ctaggtaagcttcatccaaaaatgagttatagtgctgttggttgtgagttcaaagctgatgaacaacaatacagtttcctttgaaaaagaaggaagttta
tctagctgtatatgatgtcactttggaaaatgcttcagtagcatttatgatgtgtgataaaggtgtggaaaaatgtgtgttaaataaaatttatgagaag
ccattgttctgaagtgagctcctgcactaggtcccaacaaactaaaccaaaatggagtcacttgtgctaggtaccatgtaatcaaacagaaactctAAAG
GATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCT
GTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGG
GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGaatcacagaaatccccaaccagaccagtttttcctaaaaataagatagtcaca
ggaaacaatcagaaaaggcccagtctgtgctggcatgattaataaataccctctgctttaactcttaggaagaaattaaaagtaacttaatattgaccaa
ttttcattttgtgttattctgtttccttgttcctgctcaaccctcaacctggtttgcaaaaaacaactgttacaccctatccaatggaactccttttact
tcttttcttttctttttttgagatggagtctcactctgtcgcccagcctggagtgcagtggtgtgatctcggttcactgcatactccacctttggagttc
aagtgagtctctgcctcagcatcctgactagctgggactacag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr11 7673492 7673795 1000358 0 + pAlu11-7675852; 228; RIP_Alu_chr11_007_01 NA NA SINE Alu Ya5 attgcattttcagacactgcgaacaagaaaagacgtagtgcatgattctccagaactcatcaggccctctcgactcacttggaggggcaatcactacgag
ctagcagggtgaactcagggttgagggggagactgccccctgttctctagttggcctgtgcccctctcccatgtggagtcagttgggccttgggagaggg
atccctgccactcacctaattcctatggggcctaagcttctacagaaggtggagatagtatgtgattaaaagtaaatggttttaccaggaatgtagtttg
gtttaagagctttataggtaagattaaacccagctgcattatctgtggcatcagagacgaatttcagccttagagaattagagccaatAAGAATGGATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATGGATGAagggaggctttctccacaaaattttcctgcaggatgagaaaaaaggattctttgttcagaatctagaaaatagttcccattcaa
tgatttaagaagaactgaatttgccatgatatttcaggattgtccaatccaaagtttctcagtcttgtcacaattgacattttgagccagaaccttcttt
gtgttcttgccatcctgcatcttttgtaggatatttggtagcatttctggcctctaccagtgacaattcctgcccttgtgacaactgaaaaatgcttctc
attcattgccaaatgtgtcctgagggttgggggtacaaaatcacctccagctgagaaaccacagaaacaccattccatttctgtttcttgtaagtaacct
gtct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA exon:CDS:OVCH2:NM_198185:11/15
0 chr11 9751163 9751475 1000359 0 + 938; RIP_Alu_chr11_009_01 NA NA SINE Alu Yb8 ctttcttttgcctagtaaacctctgctcttaaactcactccttgtgtgtgtctgtgtccttaattttcttggcatgaggcaatgaacctcgggtattacc
ttagacaacaactcctgttcaaagtcaagagcttctaccaaaaagggagaggcttggcctgagagaaaatgcaccagggcagaaaatgtgagccatagaa
acagagtgctcaaagggctcaggcgagtattgcacactagttccaagagtcacgaattccttctgatattctttttcaggtcctgcttctggacaccatt
tatgtcaccctacataacagagagggtctctaaaagaaaataatatttatttaatagggctgtattagtctgttcttgcattgctatAAAGAAATACCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATACCTGacgtcaggtgtggtggctcatgcctggaatcctagcactttgggaggccaaggtgggaggattgtttgagccca
tgagttcaagagcatcttgggcaatatagtaagaccctgtctctataaaaaaattagctgggcatggtggagcacacttgtagtcccagctactcaggag
gctgagctgggaggattgcttgagcccaggaggtcaaggttgaagtgagctgtcattgcgccactgcactacagtctgggtgtcatagcaagaccctgtc
tcaaaaaaaaaaaaaacaaaactataagaggttgaactggttcatggtttgcaggctgtaaggctgtagaggaagcatagtggcatctgcttctgggaag
gcctctggaatct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr11 14304901 14305202 1000360 0 + pAlu11-14387378; 239025; RIP_Alu_chr11_014_01 NA NA SINE Alu Ya5 gatgcctaaattttattttaaataaaaagttatcacacatatcaaactcaactacacaaattgttatactaaaacatttcaggaaatatgtgctttctaa
cgctaatgaagttttagaaaagattgtaaatatacaaacataaaataaacaagtatcaccaattctgaaatttgttaaatcagtaaaagaattttaaggg
gtaaaagttctatatctttataccagctgacttgacaaaattaagagttccagtaagagcaaaatgttgtcctctatttgggagggggaggggacagggc
actgagcaatcaagcagttaaaactcctatgtcgtatcttaaatcacttataacatcaaaaagaaagtaaacatttcaatcctattAAGAATATGATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGCAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAATATGATTTTgctattctgttctgctgtggaaaactaagtagtcacttgtttaaaaactaagatgaagcagacatagcataaaccaattaaaat
taaatcaaaacaacagttttaagatgcaatatgcatacatgaatttcttaacagattattatagttaaaataccactgagtgtactcacttcaagtggtg
tgtaaaaataaaaatagctgaagagaggatggtcaaacctcaaaacaagtactataaccaccacccaaaaatgcaaaataaaggaagttgtcttcttcag
agttaagaggaggggaaaaaatctttctacttacacattgggaggaagtggggatggagagaaagaaaaacaattccatgcccttcctaaatgtttaaga
ac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RRAS2:NM:001102669:1/6
0 chr11 16554155 16554462 1000361 0 + pAlu11-16636632; 5611; RIP_Alu_chr11_016_02 NA NA SINE Alu Ya5 gattccatttatataatgcataaaaacgggcaaaatcgaactatattgtttagagatgcattcataggcagtaaaactataaagtaaagaaagtgactaa
cattaaacacagaatggtgatggggtaacactaaataccaacagggagtatgggggtgtaattgggaaggaaaacaagtggcttctgggaaaataacagt
gatttcattttttttacctcaatgttggttggttacataggattcacataactattagttacacatatatacatccatattttaaataccttatatgttt
acatttcaatttcaaaaaataaaacacaaatctacctcagagttactgtgaatgtaagtgaaataatgtatatggaaaggtctttGAAAACCACAACTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAACCACAACTACacacacactcagttttaaaagttaaagactggaaacacactcactcatagaccaaataagcaatagcccacatgata
taaaatcccactacctcaaaaacacatgttgtcatagtaataagatatatcttctgtaatatcataaaataatgttgtcattgtaataagatatatcttc
tgtaatatcataaaatgatgtttaacattattcttttagagattcattcctttggattaaaacattatcctttttttaacatgccttctgagaaaatata
ctaagctgagaaataaagttataagggattttaaaggaactataatatgaagacttggagtttttcagatttagaataaatatagttcacgtctccttac
aacactcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 32243230 32243549 1000362 0 + pAlu11-32325708; 238353; RIP_Alu_chr11_032_01 NA NA SINE Alu Ye5 aggctgctgttgttatttaggtaagagatgatggtggcctggtcaggatactataaatagaaatgataggtatgactggataggaatggcgagaaaggtg
aagagagggaaagatgaagggagggtgagagggaaataacttctacttggatgacttccatgtgtttggattaacaacgtggtgagcagtgcacttcaac
ttgacccatctttctttcagagaacagctttccagttgccttgagaataagtctgcagaacctaattcctacttcttttcatcttgccagccatggacga
aatccttcattaattaggaaatcagacaaaaaacaaactaaaatgttcccagaaagaggtgtcaggaagtagaatatgtatggaattAAGAAAAGGTCTT
CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAAGGTCTTtattgatcatctgttccagccatgttaatagataagaaaaatgtgactcagattaaggagccatgac
caaaaataaacagccagtcaatggcagaaccaaggctagaatccattcttctgattgaacaaatatgaatgaagcagcataataaatgggtaaaataatt
acatgtacataatagctatatatttgtatttttatgtcctctctcctccaatcattggggaaagagttgtggcatttgaatgcaaattgaagggtacaat
ttagcactgatttttgaagacagcttgctacacatgctatgggacactaaactgtaaaacactaaatgttacttaaggaaaggaaggaaggaatttttaa
cttcaaattatgttgttgaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 37918639 37918941 1000363 0 + 238373; RIP_Alu_chr11_037_01 NA NA SINE Alu Yg6 caggagtaaaatatgcaaataaactggaaacattatcatgctaagaaatagattcttatttagccttgctgcctctggaggagctgtatgattatatgtt
acatgataagttagtttaaaataataacaggcaattaaaaaaacttttaatatttttggagctattcaatcaccaacatttatttgtggattctcctgtg
aagacagacttgccctttttagtgctctgtgggaagaaaccgaaaagaaaaaaaagacaaagtagctctcagtctacaggaactgcagtctaactggata
acaaatctatgcattgaaatgcattcagtgcccttacaaataaggacaaaggctgaagcaaattaagacaatggggatggaataAAGAAAATGCTTATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGAAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGAAAATGCTTATTAtattagaaacagaccaactgttgagtaagaacaggttagtttgggtgagattaaggacaagattaatgataaatttagcta
tcaaactcatttgcttctttctgtatttttgacctagactcattaaacaataaaataatgaattgctttttatttcaatacatagctcatagaaaacttt
agattctagctgattcagttacattattgaatatcaattcttataaaaatgaatagatgatgacaaggtttctttaaagggtgtttatttatttattctg
ttatagattcagggggtacaagtgtagatttgttacatggatataatgcataatggtgaagtttgggcttctgctgtactgatcactcaaatagcgaaca
ttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr11 42420683 42420985 1000364 0 - 3303; RIP_Alu_chr11_042_01 GGATCACTGATGCTTCAAATCAAG CTGAACCAAAGAACATGGATCTG SINE Alu Yb9 gtggaatcttagttatgaatctcctgaggcttttcagtgatctgttggctactattactctaatcacctctatcttctgtaagagtcagaattacccatt
tcctgaaagaatccccacatatctgaaccaaagaacatggatctggcgatagaaataagtaaaaaatcttttgtagaacaactcatgcgtctatttctta
ggactcactctgttttcaacccctcccacccgaggggagatggtctgtccatattatcatttagcacttacagagaaattttatgattgagctgagacat
ttctcaatatggggaattgtgtagttaacattttcatagtgatttgccattaataaaagcatacttcctgttttaattgacaacatttatttGAGAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAGAGAAACCatagaagttgtgatggtttggatcctagcctctccccaaagtcaactagactttttactttctactacaaatatatcttttctttctcc
tattgtttctcctcttctttccccacactgtccacttagaatatagtagccattgacaacttaatattgaaataataacctaatgggaacaagaaagagg
ggcttgatttgaagcatcagtgatccttactataaatgggtaactgggttacatggctgaaagagtgattaccttgtgcatcaatcacttattggattat
taggccaacataaaacatatagaaaaaattatgatcagttcagttcagttaaacagacaaaaactgagcgtttactgtggatcaaggatgccacaatgct
aaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr11 43419242 43419243 1000365 0 + 18402; RIP_Alu_chr11_043_01 NA NA SINE Alu Yb8 tattatggccctcatcctgttattcttctgtttaagaaacaagaggctccctttacaacaaatcctcttcgtgactttcccacacatttgtaacatcacc
taccttttcctcagtatcttatttgttactatcccctgtatacattctttattctaattaatttgaaattggtaatgccctcacatgtgcctttactatc
cctgtatgtatgtgtgtagacaaatgagtctatgcatacatgctttaaaaaaaaaaaattgttaactctggaaggctggatgcagtagctcacacctgaa
tccaagcacttagagagcctgaggtgggcggatcacctgagaccaggagttcaagaccagcctggccaacatagcaaaacccAAAAAAAGTAGCCAGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCTGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGTAGCCAGGTGggtggcctgcgcctataatcccagctacctgggaggctgaggcaggagaatcacttgatcccaggaggcagaggtttaagtga
gctgagatcacaccactgcattgcgctccagcctgggcaacagaacaagactctatctcaaaaaaaaaaaaaaagtccctatggggagtgacctccctga
ccctctactcttatctgtttaaatcctgtctcaggtagtccgcctttctctaagaagcattttgtgattacatgcaaatattttttccctctaaaaaaaa
attaatttttctcttattatttcatgtatgtagttgtctgtctccaacttgattataaattcattatatttcatttcttaaggttagaaactttccatt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:TTC17:NM:018259:16/24
0 chr11 43848421 43848741 1000366 0 + 9989; pAlu11-43930898; RIP_Alu_chr11_043_02 NA NA SINE Alu Yb8 agctgagatctgaaccaagtctcgtttgacatcatagttcatagactcaaaatgatgccattcccatggttctgaggactcagtagctctacagaggaat
ctgctaagccatctagataaaaccatcaagaatgcttaataactcaggggctgctggattacactgctaccaactcttcttttttgaagtcactgaaaga
caccagcaatgaggtcccaagaaatggttcatgtcattttaggaacagtcctatctttcctaatttggctttcattctggcatgtatttgcagagaggtg
gcacggtggcatcatgtggcattgtggttcagtcttctttgtaaaatgggtctaataataataatgcctgtgtaactgggttcttAAAATTAGATCAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATTAGATCAGTGtaggcatgtaagtgattggaacagcacttggcatgtaagaagtgctcatgaaatgttaactaat
gttattatttgctattatttagaaataagaatgtgtaaatgttgcctactccttttagggataatgtaactatcagaatatcttcaagctgtctgaatgc
tacataatttaaaaccttgacataattccctatactccatagtgactttgctaatgactataacctctagtgatctcttgttccccaaatttttgtctgc
cctccataatttcacatccaattacactgttttttaattgtatctcacacagtttaccctgtggttcactggatggagattttacctcctgcagcatcta
caatcgtgctgggcattgaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 49381674 49381992 1000367 0 + pAlu11-49456606; Yb8AC1565; 54444; RIP_Alu_chr11_049_01 TTAATTTGGTTGGAGGCTGG TCCCCACTGTAAAGCAAAGC SINE Alu Yb8 agagctcaaatttttcagccaatttatttttaaatgcatttataaactatcagaatgctatgctgcagaccttttagtagttatagaatcttgtgactga
aaggtacctcataaaaacctgtgtgtcttaactaccttcccagagatgtagggctcagatgccagacccagagaggtttctaggagcctggattgagtag
gtctgcctttaatatgccaccaagggacagagaaagtatggtgttcaaagatgacactggaaacaaaagtagtcaaactgagatactatttgaaaatcct
aagcagacaagcacaactaggtataaggaaactgaagagactgggaagacctggacaaagtaaattaatttggttggaggctggAAGAAATAATGGTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAATAATGGTGAAaacccctgaaataatgtggaagagtaatagatacttttaatagagcatggttagctttgctttac
agtggggagagttggtaagaaccctgagccaatttaaataaatataatatagacagactgcttaaattttctctatagattccaaatcaaattagccacc
caatccagtatgtgaagacttcctgtggttaccacttattattgtccaaaggtgtccattttgattttgtaactcggagtattaaacaatgtttcccctt
attgaactaaaatgggcccactataacttcttcctactggtcctagtcttttatgctatgcatagccataatacaaatgcaatatcaattgtactttttt
tggaaatcaatagggcccc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 443 110 NA intergenic
0 chr11 61646898 61646970 1000368 0 - 12975; RIP_Alu_chr11_061_01 NA NA SINE Alu Ya5/8 agtgtaactgtaaccccacttcctgaaatctcaggagtaatgttaaaaatccaaacccatcaaaggccagggtgttacggtatttggctcatgaatcgaa
aagcctaatcatttcaatttaatctttacaagtagaacaagatccaaacatgggacgttttcttatttttctttgcttttgtggttgtaatgcccttttg
gttttctgagcaagctgaatacatctgataaatactaccattggacaaaggatctaaacattgagatgttttactaaatcaaggtttcaagttggcacaa
tgtttttactaagtcatatttcaattagttcatctttccaatatggaggcggggggggaaagacaaggactaatatgtcctatAAAGAATCTCTGGCCGG
CGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAATCTCTGGCCGGgcgcggtggc
tcacgcctgcaatcctagcactttgggaggccgaggcgggtggattgcctgagctcaggagttcgagaccagcctgggcaacacagtggaaccctgtctc
tactaaaatacaaaaaaaaattagccgggcgtggtggcttgcacctgtaatcccagcgactcgggaggctgagacaggagaatcgcttgaacccgggagg
cagaggttgcagtgggccgagatcgcgccattgcactccagcctgggccacaaaaagcaaaaaactccgtctcaaaaaaaaaatctctgccgcttttgag
aagtaaaaacaaaacgccttgtgaatggcaacggagtgtgcgtttatctagagccttctgtcatctcttgggc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr11 81233832 81234186 1000369 0 - 3136; RIP_Alu_chr11_081_01 NA NA SINE Alu Ya5 attattttataatatatttacatttacaagcattcttaaatgtagatgaaagtggagaataaatgcatggacaaaaattatcagtcgttggtgtgtatgt
acatacttcagtcttattgatttgactaataatgtttggtcccttaacatattcaaatcagctaagtgtagagtcccagctacagatatagattgaatat
gtattcaattaaaaatcccagtaatattcaatggcatctcatttttttcagttagtactgatggcagatagacaaaaagtttattgcaagtttaatgtac
atgaaaaagcggtttgaattacagtggcttactgtcaaagtgtgtcattagccaatgtaaaaccatatctagcataggtagatcAAAAATATATGAACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATAAAAATATATGAACCTgtagtaaacatgacatttccataatcatc
attggcatagtagccaattaagctaattttctttgcatctaatctaaccagtatgccgtaaatgttttacagagaaggaaatgttttaaatttcccattc
tctgaatctatttctgtgaattagcaagaatccctcacttctataggtaataccaagctagaggcacacaaattatttttagcatcttggccccatgcac
tattcatctccaaatagtttaatagcttttataagtttgtcatatcatttactaccaagggtgaagcagaatacatccttaaaacagaactgtttccata
aaactctgtataccagcatttcagaaaaactctgggccacaactctttttcaagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr11 91885655 91885949 1000370 0 + 14987; RIP_Alu_chr11_091_01 NA NA SINE Alu Yc1 aaaggttaaagcaaaggggactttcttatcatgctagctaaaactgccctgttttatatctcaaaaaaaaatatatataaatatatataaattatatttt
aaatttatatatataaatatatataaattatattttaaatttttatatattaaatatgttttaatgtataatattaaaatatatatatttaaaatatata
tatatcttgatttcttggaaggtcagataaacaacttagtgttggcttggtggcatggaacttaacatgagtgactccattttggtttgatcttttgggc
ctggtgcaggaactcagtccaaaccagtgactttctgcaaattgtatttaacacactaaaatgtatttgaagcattataaacatctaagttAAGATTATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAGAT
TATCtccacccacaatttctctactaatctctgttcatgccatttcaatttgtttcagctgtgtccatatatttcagactgacagcaattacagatatga
ctataggagtgagtggagtgaccctggttgggcctatgaggataaaatgcccattcttccttaactgttaccacacactgtgctgaacaatgatttctgt
gaaggcattaagaatcttatacaggtccaaggatgaatagaacaagaaagaaaaatagtatctgtatgatcttgctagaggcaggcatggggttggctaa
aagtggttatggagcccatgaaagaatttcatgtgctctcagaaataaatctagtttaaagagtttgactcttgaagaaataagcaatttaaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:FAT3:NM:001008781:1/25
0 chr11 92248127 92248128 1000371 0 + 15668; pAlu11-92793021; RIP_Alu_chr11_092_02 NA NA SINE Alu Yc1 tttttccttcataggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaat
gataataatcattattgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttc
ataaacaagccttttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccct
ctcattgtgttaacataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaagAAGATCCTAGACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGATCCTAGACAGttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg
ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc
tttgtatccccagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac
tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FAT3:NM:001008781:21/25
0 chr11 96119984 96120296 1000372 0 - 13787; pAlu11-96648755; RIP_Alu_chr11_096_02 NA NA SINE Alu Ya4 gaggctatccttactaagactgaagatcacagaaagatagtattagaaaaaaatggatacataaaatattccttggtagtgagtgttccttccataaaaa
ataataactttatggttgttttaaacagtagttgcaattggtatctttgctttcagaaatgtctaataggaaaaataaccccacagaatttggaaagatg
gaacaatatcttggtaacgaagtagaagttagaataagagagatgatgtgttttgtaataagaatcacaaagagacatggtatcctcatccaattgtcct
aatacttactaagcattgttggtgatttgagaaaaactgaaaatttggaaaaattatattcagattcaacttatttggaatcaattAAAGTGAATAATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG
TGAAAACTTATCTCTATTAAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAGTGAATAATTCtgggcacccacgaagaatcagacgaagttaaatagcataagtatgtgcatattcgttaagaaaaataaaaatt
ttcaaaagatatatagactaagaaattttgactaaaagaaagataacagcagaagttgaagaatttctaggcacagaaagtcaagagtacaggagactca
gtggtacttattagcaagcacattatgaaaatggcttacaaagtggagagagactgttgagtccagaaggagcgataaattaaaacaatagccaaaaagt
gctgtgagtgtagaacatcgctattcatttgtagtgagtaagtagtagaagtaagaggcatagaagtggtcataaaaagcatgataatagagcttaaagg
ttgagtgattcta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 102593155 102593300 1000373 0 - pAlu11-103121915; 6899; RIP_Alu_chr11_102_01 NA NA SINE Alu Yb8 tatttcaaagagcagaagttttcattttgatgaaattcaatttatcaattttctttttctattttgatatcacatcaaacaagtctttgcctcaccaagg
tcataaagatgttctcctgtgttttcttctaagttttataatttcatgttctacactaagatccatcatccacactgtgtaaatttttgtgtaagttaaa
aggtaaaggttctgggctttttctctctctacctggatatctaaatatccagcaccatttttcaaaaagactatctttccccatttatttggcatttttg
tgtaaaatcaaccgaccacattccagtgatctctatgcctaatattacagtaatatcagattgccttatgattactgaaaagtgactcttGAAATCCTAA
GTCCCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG
TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAATCCTAActcccataactttgttgatttttcatgccacttactttttaatt
gagatatatacattagtctgatgaatattaaagttaattttcataaaagaggcattagattagtgcctagttgacaaggtaacagttaccaagagggaga
tggggaaacatatttgaggcatagtcagggaaataaaattgacagaatttaatgactcattacattaagggataaggtaacaaaagtctcagtataatat
aatttataagttctgtcttaaataattagtgtatattatagtaccataatctgaggaaagaaatacaggaaagaaaactcataagttcagttttgaacct
gtttcaaattgtaatgcccgagagacttccaagaagacatgtttaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DYNC2H1:NM:001080463:55/90
0 chr11 102916042 102916344 1000374 0 - Yd6JX456; 20874; pAlu11-103444811; RIP_Alu_chr11_102_02 AAATGCTCAATGAAGGCTGTAAG AGTATCATCAACCCCTCAAACAA SINE Alu Yd8 acagctctgtcaaattgacacataaaattaaccatcccagctagccttcccatttgataagtgacttctggtaactaagctcttcagtctagtcaatgcc
atggctgcaattcttccattgcaagccctctgtaaatctgatttgtgattagaattggtgtagcaaactgtcagcatcaatattgtaattaggaagagct
aagagcccaggacttagagacatgcaaaagtctatggcaatggagagacaagcagaagagggagtccaggaccccagaaaaagaggaaattattgcagta
tcatcaacccctcaaacaagccaaattacacaaagggaagataatcttttcaagttctatagccacaattacattgacagagacAAGATTAAGAATTACA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC
GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGATTAAGAATTACAtgtagtatagaaatatactggtgaagatccaaacacaagaaacttggcatcctcttacagccttcattgagcatttgctta
atgtaaaaattatattgttgctttaaggagatttgtaagttactcacacaccatcattttatttctcaaggaatttcttttctccaattcaacaggacca
atagcactggtatgcctatatcagttgttaaatgatctgaatatcatgtttggcatgtggaaaaacactagtggggacattatctattcatttataatgt
gtcatgcaaataatgccccataccaaccacaccgagaggttgtgacttttatactcccttttaaagaggaaggtatgcaatgattctcatttttgttata
tta UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Reference NA 60 499 186 NA intergenic
0 chr11 103515694 103516036 1000375 0 + 14867; RIP_Alu_chr11_103_01 NA NA SINE Alu Yb8 aaacagctgaaaagtaaaatgagtaaagataacagacagttaatgggaaaagctgagcactaactgccccagtacaaattaactatctgataaacggtga
aagaacaggcttacatggatccaaactgaactagaaataggcttctgggacaacaatccgatcacaaacactaaagactaaagactaacacaaaagttac
gtgtagtagctactgctttcaagtagatgcagggtaacccagtgattttttactttaaacaacaaagactttactcacaacatcattggaatcaactgca
tatttccctgattcataaagaaaactcttccctagaaaccagcattaacactgcagacagtgacaacaccttgggttcttgtcatgtcttAATAAATAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGG
AGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGA
GACTCCGTCTCAAAAAAAAAAAAATAAATAAATAAATAAATAAAATAAATAACtgaacgagaaaaaccaaaggaaataccagtatagagaactattcagg
caagtgtgcaaattaaatcctaattaaaccatttgaatatcagaacaaatatagcacaaaattataatgccaattagcattttgttgatcagtcattacc
ataaaacaaagagcaaatataaccatgttgctttaataaggtcctaattaaagaaaaattactttagcacaaaatgcaaagaaacagcagattcacacat
aaacattccagcagagacaagttaaagagattgagctcacatgcaattacttagtgcatgaaaaacccgtaaatccaacaatcctctgtggccatcaaca
atcctctgttaaaacatgttcaaaaggtgcactcttttaaaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PDGFD:NM:033135:1/7
0 chr11 105270732 105271034 1000376 0 - 1140; RIP_Alu_chr11_105_01 NA NA SINE Alu Yb8 tatctgtcttttatctatcttccatctatatatctacccatttatcacctttgttttatacctggctcccttttattgccactattttaggtaccttata
aaaatccacactcaataaaaagtgtaaaacagataatagcaagaagagagcaaaaagcctattaaggaagtgaattaataaagccataggtattagctca
gagaaaagtaaatcacatacacacacacacacacacacacacacacgcatgagctcgtagcttttgtaattgctttctttttgttttctcttagtattta
gtaaaggttcttttgcaaatgtgaatatgcttcaatttgctgagggaatgaaggagagtgttttgtttattttttggtgggaatAAAATATGTAGCAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAATATGTAGCAATAatcctgcagttagagtaagaagtaatgaggacttggagttgcttgtccttctgaatgcaccttggctatggttttgggatc
ttcagattatttgtttctttccttccctcttccctccctcctcctcctcctcctttttcttttatagtgaagtagattgtcttcctaaccaacatatgtg
cattgctgtttggctatctacgaaaaaatatatcagtctactggcaactgagcaaaaattgctgtcaagaggcccaggtatacgagctaacagctattat
atgctgagcttattatatgccaggcattgtgctaagcgtattacacagattattgatctagtttagttttcataacaaggttatgagatagatcctatta
ttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:GRIA4:NM:001112812:5/10
0 chr11 106101091 106101374 1000377 0 - pAlu11-106629868; 6518; RIP_Alu_chr11_106_01 NA NA SINE Alu Ya5 ctgtcattttagtagtcactggagagtcaagcatttaattaaacatgcaaatgcctgtcactgactacttttaagctcataatttaccatttcaaacatt
tggctcaaagtactctgaaatattactaacctccatcaatgggaacaaatactttattaatattgtgataaaaagtaattacatattaaaatattaccat
atactatacatgatactctaccatggcttcatttttgttttgataataactttacgtgattaaattaacttttaaaaatatatttttaaattgaactatt
tggtataattctgataattttagaatatgtatactctcctaaatatacaccatgaaaataaatatcacagttagaattttagccaatAAGAATTTATGTC
GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTATGTCaat
aagaagatacatagaaatatcataaatatctgagttgttctctaccaaaataaaggatttcttaaataattcagtctgcaatcctaattatttctgcaca
gtgtaattaaatttctattgtgaaaattaatattcttaaaaagtaataacatcaattgttgcaggcttctttttaataaacatctacataaggtgtctgt
atacttggagatatgcttatctgagtaggagaataagatttggtggtaaagctaatctagtaaatgaaatcaaatgagataatagatgcgaagggcttga
cacagagtgttgcacactctaagtgctcagtaaaatgccagagatgatgaggatagtgatgctcacatctgtattgtcaggtta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GUCY1A2:NM:000855:6/8
0 chr11 124335362 124335456 1000378 0 + 18844; RIP_Alu_chr11_124_01 NA NA SINE Alu Ye5 acacttaacttccaaaaggacaagtgtttttccaaacaatttgaatgttgctattggaagttctaggttacctccttccctgatgcctggggatggaata
gaggatgaagagaatcagaacgaattattccaacaacaagcccaggctgtaagtacctgttctttttattttatgtctatgatattttccctatccccta
aactataaatatgacatctagggtatgaggtagggattaagagttatcacactcagcttcacttttgataatcatccccctttttttttttttttagctt
tgtaaagtggggaatagtgggataatgctttttaaaaattttaaatttaaattcatttgtgtttggtaagatactctaaaattatctAAAGAAAAGTGCC
GCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA
AAAGTGCCaaagtgctagaattcaaaacctattagaaagcactttaggtcaagaacatggattttccaagttatattgaaattatattctaggcaagcta
ctattagtttgtaatttacagagagaaataattcttaccttcgttgcaaagaagttcagtatacataggtggcatttcatttattatttatctttgtctc
atttttcttatttttgttttttaatctgattatcacaataaatgaatctatagttgtaggttaaagaataatacatagtaaattcgtaacatatccagag
tttttggaaaaatgtaatttttatttaatgactcattttatatacctaatatttaaaaattaaccactgtgagtagatttcatccattcacattg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:CCDC15:NM:025004:4/16
0 chr11 132063805 132064084 1000379 0 + 15278; RIP_Alu_chr11_132_01 NA NA SINE Alu Yb8 atcactcatgctctttgaaccggcagtaaatgacaaacatgaggagaaacaagagcactaaactggtacccgtaatctagtcctgaccgacactagcttg
agacattgagtgtgaccttgggaaatcaaagagctttcctgggcctcagttatccaatctgaaatccaggatattggatgtggtggttgccaagacctct
ccaattaaaggctgtaatttagaaattgtcttttttaacctttttcaaggaatgatagtatattcaatgcagcctggaaataatgatggtatcactgttt
ttgatggaattggtactggataaccttacattaagtagaaccaggctgcattttcagcaagagagcatattatctaatagatacaaaataAAAAATAGAT
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAA
ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG
AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGATaagctccttt
ttgtgtatttgagaaacaaattgttagtaaaatgagctgactgtgctctttgagcccctgagctgcctgccctgaggattacgtgtgacatgtaacaaat
cccgggaatgctgtttcagtctgtgaggcagggctccataattatttttaatacatttctaggcttgttttcagaatatacaaagaaaacattcaataat
gtcatctaaattgtgaagggcaattagattgttacattgggattttcactggattatgtggtgaggtttcctcacttggaataaggccctcctttgtttt
ctcattgatttaaaatgacaagtttataaagagcaaaaatgtttggatgactgacagttcaaattttgtggtaaagagta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:OPCML:NM:002545:1/7
0 chr12 5639864 5639865 1000380 0 + 3372; RIP_Alu_chr12_005_01 NA NA SINE Alu Yd8 aagctatcagcaacctccattagtactgcagaaggtccctgacttaatgatggttcgacttacaatttttcgactttacaacaggtttatcaggccatta
aatgcattttctacttttaatatttctgacttatgacaggtttatccaccataaccccactgtaagtcaaggagcatcctgagatatgaatccttgatat
acagccttttctataccatcatacgaacatcttaagccaaatgactatgaactttgaatacatctaaaccctgtgctgtggcctccaatgcttaccatga
tccgggctttgactcctctccaactttatctcttgccatgcaatcttttgtatactccatctcagccacactggcttccttcctgttcttAGAACACGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCACCACAGCACTCCTGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAACACGCCcc
atagcaaaaccttagcatgactcctctcctcactctccacccagctcctccctcagctcagccttcaattctcgattccagcatcactcccacaatgaga
actttcccacgccccttgtccatccctggtccatgttattctctaccacagcacttattgctatccaaagtgatcttgtttatttattcatctcctaact
ggctttttaaggaaaacatcagctccataaaagcaaggaacttcaaatctcattcaacatggatccagcacttgggtcacgctgatcacagaattcattt
gcatggatgactcagagagtggatatcagtttggaaacaatagccgggctcattttggtggtgctccatgctcataatattgggaatg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ANO2:NM:020373:15/26
0 chr12 10125471 10125472 1000381 0 + 19912;1104685702828; RIP_Alu_chr12_010_02 NA;NA NA;NA SINE Alu Yc1 acatggggacagagtgaccaggacacacttacctccagctttgttatacagctcacgacagagtttttcagccacatgctgcagacttcctgcaagcttt
atattctggacttgaagagattgcaactcttgggacgtatttcctaatctttcttccatttgagaaatggtgtcttgaccagtattggagagctggtagt
actgaaaaactaacccaaatgaccaagtcagactggacagcttatttctatgttttatttccattttctgcttatggggaagacaaaacagtatattttt
tagtatctcaggctctgagttctcatattgcctatattcaagtttggactctagtacatatatgagaagttgtatcaccttgggcaAAAGAAATTAATTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAGAAATTAATTTtgtgaagtcatgaggagaaaatgacggctaagagggctaagatagagctcccatttggacaacagaacagggtgaggagac
tcacactgtgaacttttcctccaggaaccacctcaggaacataccaggaaaattgaaagaatgcacagatcctttgaaagaagcaactcaatactgaaaa
ttctggaagacagccaaaaatgtgtgaagtggggaaaacccacctctgaacacacatccctaatggggaacctgaaaatctgggttacatgagaaggatt
taacctcacctggagcagaaatggatgtagggagccaaatataaaatagatgcaaaatataaaagtagaagaagcagaggaaagagtcctgtaggcactc
ccatt Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:CLEC1A:NM:016511:2/6
0 chr12 40768967 40768968 1000382 0 + 21995; RIP_Alu_chr12_040_01 NA NA SINE Alu Yb8 cagactagcacaggaaaaagtctaaaaagtaaaacagaaaataaatctgttgagtgttgtctgacctgtttgtcccaagatatatttttggctagagtcc
ttcttttactataaaatatactaatatcgagaaataaattttggaaaaggctgtggtagtaaagtggaaataataagtaatctttgtattttcaaccagg
tattttgtgatttagtattttcaactaggtgtattttcaattagaaagatggatggggcttaaaagtagaacattttatatggaagttgaagttggtgaa
aaatgcaaaatcacaaaggaaattcagaaccagaaatctcccaggttatccctgaggttcactagcacgctgagggagaggaaatgaAAAGAACCACCCC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACCACCCCagtctgcaggaa
gctgcagtcaatctacagagaagaggatgaacttggatgtttgtttaaaacatgggttttgtcactgtagagatgcaaagagatcctaaactttggcatc
ttttgagcaagaaaaactgtaagcattaactgcataaaaccatcacccttggagtgatttttaaaaatcaatcacacatactcaagataaacgtctaaaa
ttgttttgaagataaaagttttaaaaagagatggggaaacttagccaggaacaatgtaataaaaataacaatagcacacagagtgcttgctacctacatg
ccaggcaccattctaagagttgtatatgactgcatgttctcattcataggtgagaactgaacaatgagaacacat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:GLT8D3:NM:173601:7/8
0 chr12 43705813 43705814 1000383 0 + 20014; 238919; pAlu12-45136302; RIP_Alu_chr12_043_01 NA NA SINE Alu Ya5 tccccagagcctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctg
ttgctttaagacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccag
acaaagagcacatagttcccaccctaaaggagctcaccttcttatgggaggggtgatccatgaacattcactctgtaacatagcaccaggaaggcagcta
ctatgtaacatagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataaAGAAAGATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGATCTGaaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataa
aagaacaataccgtttaagagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaa
gcagtcatcaaggctggggaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggtta
agaattctgatttagttgtccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagt
gagtagcaggtgcctcttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DBX2:NM:001004329:2/4
0 chr12 45361634 45361965 1000384 0 + pAlu12-46792013; 18789; RIP_Alu_chr12_045_01 CCTATTCAGTTCCATCTTCCTTCTGC GAGACTCCATCTTGAGCTGTTCCAG SINE Alu Yf1 accctaatatagctagccaatttcattgccttgtatctattattttctacacactttccaaagaatcaaatgcctgaatcattgcactagtaaaagcttt
accccaaagtcataaacagtaaaatttttagcaactgagctatcattttgtactgggggatatatgaacctcacatatggcaagatggacttttcttggt
ctttttagtcctgtgaggttttttcctttttttcttttcaatcagtatctagaaaaaaaattaccttgaaatctagatactttgagttcatgtaatattt
ttattcctattcagttccatcttccttctgcattaattataatgcaatgaaaactaaatcaataagtttagtctccaggcaattAAGAAAGTATCAGTCA
GGCCGGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCATCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTATCAGTCAatgtagctctaggtagagcctttagtaaacctgaatctttaagacctctgaa
ctttttttaaaaaatgaaaaacgtacccagattttgaacatttgttttgtttaatactgttttgtactgtagatacagtaccaatcaatttagctcaagg
gtctgtttgacaaatgtcagaaccctggcgaccatggtgcatagaattatgtccaagcttcacatgtccaccatgaggccatcatatttttgactggggt
agagttctggaacagctcaagatggagtctccaaaaaggtgcccagcttctggtcatcactgaatgttgtgcctaagccaaagtcaactatttttatgtt
gtagttggcatgtagaaggaagttctagggct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 52531689 52531963 1000385 0 + 13247; Yb8AC1634; RIP_Alu_chr12_052_01 GCTGGACCAGGAGTCTCTGT AGGCACTTGAGTCCTTGCAT SINE Alu Yb8 gagaggtagaactcaggcaaaacttctcccccagttctgtcttagtctagttttcctgcctgaagagagacattttcaattcatcagagcttgtgcctcc
ctccaacttaagatctaaatgagtgttttcccacctctgtctatctactcacatcccaaatatctccaaagaaactggggaagagctctctaatggggaa
cgtgaacattccacttctctattagagaatcccacaaaattatgtcagagagctgctggaccaggagtctctgtttctcagtaccctgacttttgctccc
tccccactgctttgcttggctggaatcaattgacattgaacctgcctattgcatttaagagaagtgggagtacagaaagggttttAAAAAGTTAGCTTCA
AATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATAC
AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG
AGCCGAGACTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGTTAGCTTCAtgttaggaat
aatgcaaggactcaagtgcctccctaaggatctaattttgaatctacagggttgaatgagaaactagtccatttgaggcagcctaacatggggcacttga
aaatggacattttctcacgatctgtcctttcctttaaaaaaataatgtaacttagaagaatatgattatcctaaaacattttattttttaattaaagagg
gttcattatgctacccgtctcatctcgtctcagaggaggaaaaccctgtgttcagcaagtttgctaagaaataattataggttcagatcttccccaggcc
ccgaaattcaattaaaatttttttgttttaagttgctagcagtcacatggtatgtatgtgtgtgtgcgtgcgtgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 467 178 NA intergenic
0 chr12 63683559 63683560 1000386 0 + 17453; RIP_Alu_chr12_063_01 NA NA SINE Alu Ya4 cttaataaaacctatcatgaaaaccccatttaaaacttcaatctcgggctgggcatggtggctcacgcctgtaatcccagcattttgggaggccaaggtg
gggatcatgaggtcaagagatcaagaccaacctggcaaacatggtgaaatcctgtctttactaaaaatacaaaaattagctgggcatggtggctcacacc
tgtaatcccagctactcgggaagctgaggcaggagaatctcttgaatccaggagacggaggttgcagtgagcagagatcgtgccactggacgctagcctg
gcaacagagggagagcccgtctcaaaaaagcaaaaaacaaaaaatcccaacaacttcaatctcccatttccttccccagtactgAGAAGGTAACAGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA
GAAGGTAACAGAATAaacttatgtatcatttacttattatgtttattgttgtgctcaaaatttctttcacttctttagattcactcttcacccttatcat
ctctgtcctgtgttctgggaagctgacatctatggtgtatatcaacaaatctcccttgctctctggcttctagttgtgttcagctataggtgacactgtc
aaaatgttgcatgtggggaagaaagagagtttggtgtatttccctaaattggtctgtcaaagaagactagactgctcagcacagtgtcaccaagcagaga
aaactcctgatcttacatagggctcaacttgaggtaaggaactcaagattggcacattttcagaggctcaaatggctgacatcatctgtagaaactttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr12 74585211 74585511 1000387 0 - 5142; RIP_Alu_chr12_074_01 NA NA SINE Alu Yg6 catcaaacagaccagtgtgatattattaaataggaagcacaaccctaggcaaacaggatgaaatccaattatataagggtgagagtaaggacttatataa
accataaaaataattatagaattggctagccaccatcactgctttaaaagacctgtgggtcagggctgatctatgatcaacgatcatgatcattgctgat
catgaatcagcaatatcatgtcattgtgggggaataaagctaagaccatccagggcagatgtaattcttcctctatgctctgagtacatcagccatgact
gtgctacaaataatattgctccctgaacttaaaaagaaaaagtctcaaatattagtattttagtttagccaataaaattggcaaagttAAAAAATAATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAATAATCCtctgtgttagtgctagtttgaagcaagtatattttcatatacttctgatggaactcctaatgataccacctttctacaaggcaattt
gacaacatgtattaaaaacctttagctgtgaatattcttggagcaattccaatttcagtatttttttttctcaaaagaaatcactggagacagatgcaaa
atttagctacaaagtgtttattgcaatataatttatatagcaagatcgggtaatatggtaaaacgttggctaggcacggtggctcaggcttgtaatacca
gccctttgggaggccaaggtggatggatcatgaggtcaggatatcgagaccatcctggccaacactgtgaagccctgtctctactaaaaatacaaaaatt
a UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr12 82566416 82566713 1000388 0 + 237938; RIP_Alu_chr12_082_01 NA NA SINE Alu Ya5 tgaagatgaaggcctttatgatgctctacctccacttaatagtaagtatattttctcttccttttttcttaacattttcttttcttcagcttactttatt
gtaaacatacagtatataatacttatataaaatatgtgttaattcactgtttatgtcatcagtgaggctgctagtcaatagtaggccattagttgtgata
ttttggtggaggcaaagttataaggggatattcacctgcatggagggttggtccacctaacccctgtgttgcccaagcatcaactgtatgttcaaatata
tgtatttttatttttatagtatgagttaattggttttggtattagttttcagagctgatataacaaaatatcatctgggtggcttAAAAAAAACAAATTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAACAAATTTattttctcacagttctagaatctggaagtctaagatcaaagtgtgggcaaagttgattctttttgaagactttttttggcttgcagg
tgaccagccaccttctccctgtgtcttttattgtcttccctctatgcatgtgtctgtgttccaatcatctcttcttataaggatatcagtcatattagat
taggtctcacactaatgactgtattttaacttaactacttatttaaggcctatatcgccaaatataatcacattctgaggtactaggggttaggactaaa
cataaattttgtggagatgaaattcagctcatcacagtcctcaattaatccttatctttataaaatcctaaagcaaaggaacctaaacctagaccaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr12 85047457 85047767 1000389 0 - pAlu12-86456173; 17348; RIP_Alu_chr12_085_01 NA NA SINE Alu Ya5 attagtcagtactaaccaacattgtcaaagaaatgcatcttttataagactaaatttaaatgtttatatttttgatgaaaattatttgtttaaaaaccca
caggctcatgtgtcagctatcctttgggctgtaaaaataaaacaaaatcatttatctgcttttcagggaacataattccatcagtataggcaatcataga
tacttgtttaaaaacttcaacttaaatcctacataaccaactttcatcactcctcagagttaatgctctctatctcttagtaaaagtatcccaattccag
agtgtctcaggcatttttcacacagtgcatgtgctttatgttgtaggggtagactgatttgctaaagttggaacaggaattaaaagaagttAAAGATTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCGTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGATTGTgtaagcaaaaactcagttgtatgtaagcaaacccagttccccgtgaggaagagaaaaaggctggagtcctttaaaattaa
ctctctgtttttctctctgtggctagtgagccttatttctccctttcccaggcattgtgaagactgtttctctagctgtgcagctgcaaggtcactagac
agataatctcaagttgtaaaacatgttgttccttgaaaagtaataaataatgtaatgcatgtcttaattgaataactgtctttgtttctcacttctgtaa
tatgcttccccctgcacagatctccccccaccccacgaaatgcttaaaaggtagcttgactctttgttcggggctcagtcctttggatgttaatccgact
gggtcagtgca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MGAT4C:NM:013244:3/7
0 chr12 86862303 86862304 1000390 0 + 239047;1104685533784; RIP_Alu_chr12_086_01 NA;NA NA;NA SINE Alu Ya5 ggtgggttatttagaactttttaggaaaggggaaataacttctgggtcattgccatggaaagggttggtaacgtctatgttacaaatgccatggcatttg
taaactggcatggcattgggtgggagtgtcttatgctaatggacaataagggcagctatggatatcttccattgccatctgctggttcttgccagtttct
tcacttcatcctgttggaattaagaaataagtcctgttgatcctctacctcaataagatccaagaacaacctctttttaatattcgaggcactgtaaggc
agtggcatagtttatattctctaatggaaaaatagaaaactagaaaatagcaaaggtaaattctgactagagggagatatagaaatttaAAAAGAAAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAAATGtatccttttgttgtaacatgtacaagttattttttaagatgtaacagctggaacctatagtacctaactccaggaacaatggtgactattttt
taatgttgaaggtgaaggaagagctatcacaaggcaaaaatccaaaaagtttctcagcacatgagtagcatcttccacggaccccttgggatccagaaga
ggtcaaatccctcagttatatattatagctccacgtagcttgctttatgacaaccacaaacatgcaatatattttgtggttattttatttgtgcctttca
cacctcctcaacagtaagcttcataagagcaggaacctgtttgttttggcttaccatttaatccccagtttctagcaaaggaattgacatataata Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr12 92882476 92882771 1000391 0 + Yc1RG189; 963; RIP_Alu_chr12_092_01 CAAAATGACAAGGAGCCCATAG ACAGACTTAGTCCCAGGCATTC SINE Alu Yc1 tttcaaagtcactcccagattttagttatttgttatatagcatcccatttctaggtaccaaaatccatatcacttatttttgctatataacaaattaaca
cttagtggcttaaaacaacgtacatgtattatttcacagtttctgtgagtcaggaattttggagcagcttagcttggcagttctggctccaggtttcata
tgaagttgcagtcaagatgttggccaagacatgtacagaaaatagctatgggatcagaaccccagcctcccagatggaatccaggggaaaggccagttac
acagtctggacctcacagtgagggatgaatgggaaatcctcccctccaaaatgacaaggagcccataggccaagaattctgattAGAATTAGGAGCTGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAGTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
TTAGGAGCTGGGtcaggctctggccggcatagggaatgcctgggactaagtctgtgagtggcagaactttggtgcccaaagccaggcagggataggctca
cattaggagctgctgcatgacagccctctcagcatttggggttagttaccacataacataatattcaaattctttatccttcagtggcctttctccagcc
acgctctacttcatcaaagtccttctgattctgtggtagttaatgcctcaggcatagtctgtccagtgcagagaacagaggggccattaaacgcatccag
aaactacgcccaaggggcttatttctgggatgaatcaaacaaaaggagattgtcatgacaagaacttgggtaaggattgagaaatgtctctagatt UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 53 409 97 NA intergenic
0 chr12 95229495 95229496 1000392 0 + 8929; RIP_Alu_chr12_095_01 NA NA SINE Alu Ya5 aaaaaaaaggtaatccaaaatagtaaaggcaaggcatttggcttttgtattcacaggctctaacatattatttcttagtgataagtaattgtaaagtttt
attgcagttgcaaagttacctacattgattatatgtaatatactcatggcaaaaacatttactgtaagcaaaagtatacagcgaagtgttacagaaatga
aattttgcaacctcagtaatttttgagtcctttcactggtaaattcaacttgaaatttactttaaatttattataccatatagtaacattaggcaaacac
taccacaaactctgtgatcagtttaaataactaaccaagtagacattatatgatcttgtatgcaacatggggaaagagaattgtaAGAAATGCCATTAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAANAAAAAAAAAAAA
AAAAAAGAAATGCCATTAACctttatttaattatacaatgtgagctgggataaacttgaaaagaatcttgcctatatcattgtatcaagaaatttaagcc
ctataaaaagaaattcctcccattcataacagcagccaaaccatgaaacggaatggagaggtataggaactgcataaatatttactgagaaatataagac
ttaagtataaaaacatacaatgccaccaaatggtaagaataagtaaggagaagatactggtcctccctatattaattttataagttatataaccactaag
aaatcacaataagcttattcttagaacaaaataaaatgcctaaaatgtatcaatagaataaacagaaaaaatccaaaaacattctaaaataagaaagagt
atatg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PCTK2:NM:002595:4/17
0 chr12 100838212 100838293 1000393 0 - 13652; RIP_Alu_chr12_100_01 NA NA SINE Alu Yb8 catgtgccaccacccccagctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgc
ccgcctcggcctcccaaagtgctgggattacagatgtgaaccaccacacctggcatacttttatttttaaaaaagatatatttactttgtattatttgga
actagtaagtgagacctcctaaaagaaaacaaccaggatacatgactattaacatcaaacagcagaggacatatgaaaatctcattggtgggagagctat
taaagatgcctcccattgggaataagctaacacatgaagttgcacaatccttacagatttttctcaaacacattaaggataaAAAAAGAAAGTGCTCTTT
GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAAAGTGCTCTTT
ttaaaaatgcaaaatgtcttctgcaaatttttactaatcctaattgtccgcaatttaaaacatttgaattgataaacacctacctggaaatcttggatga
aagttaggaagtagaaaataaaaccaaaggccactgtccattcacagatcgcactcactacgtgatatacataatcctaatgcaataataaagaaacaga
atttagccgaaaaagactcactttaatgtacatactgaaatacaatgaggagtttcaaccaaaggaaaaagctgtccagtgagcataagtcagaactttg
aggatatacggtaagcacaaccacgttactaagtgtcagggcacctgcccactgagaatgcgaaggcaggtattccaaagtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DRAM:NM:018370:6/7
0 chr12 102817538 102817854 1000394 0 - pAlu12-104226260; 14809; RIP_Alu_chr12_102_01 NA NA SINE Alu Ya5 gacagattgttcttgccaaaataaggagaaatgtttagaatcattttccaatactagtaacactgactttattgtcaacattattttcagaaaaaataat
tatagtcaccaaaaatgtgattttaaaaccactcaacatatatattttccttcatatataaagatatatatctataagcatcagccatgagtattttttt
ttttgcttagaattaatttttgctgattatattagtgctctatgctctgtgactgtcaggcagtatatacttcctgaggttcattcacattcaccttgtc
atttacactctatgccaaccgtgtggaagaggcagaggatccacacctctgtgggctctgacaggggctgcttgtgagccatctacacAAGAAATGGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA
AAAAAAAAAAAAAAAAAAAGAAATGGGGGccacacatggcttgaaaacaaatcattagaaaaaatagtattttaaaagctcctgatgatctgtgtgttca
cattcccttcacttctctgggcctcagtttcctcatctacaaaatgaagggtctggactagcctagatgatttccaagaaccccttctgctctaaaattc
tgtcgtttcagttctgaaatctcaacgatgcccataattttaaaggtttttaaataaaaactcaagggatgaatcatcagctgaatttctttctcttccc
tttcttgaaaatcatttttcattgtttgacataagctcaatctctatcttttctgacaccttcactttcttaatgtcccacattcataaaaaaagtttca
agtaatcgattttatga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LOC253724:NR:027249:4/16
0 chr12 121576305 121576621 1000395 0 - 19405; pAlu12-122818682; RIP_Alu_chr12_121_01 NA NA SINE Alu Ya5 ggcctgagaatttgcggtggagaaaggggctggggaagagaaagacgatcaggagtggtctctgaaaagtattgggtcaaaaaggcagtgtctgtaaagg
gtagtgtgggagaagagagcgacttgtagctatttttttttttgtacgctcaatgagatgcttctagttgcataatttcaattagtgttcgtccgtgtaa
accttattattgtgtattaacgagctaggaaggtattgctgaaagggagtgaaaattcaacttaaaaggttgtggaactaccaattctgactgatgcgcg
gtttccgaagtggcccgtgatgtaatcaatttgaagtccgagaagcgttacagttaagtcttgtcactgaccttgttcctttaaattAAACTCTTCGTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAACCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACTCTTCGTTGaccccagaggagctacagttcgtaaattatctattctgaacaataagcctgcgtgtgtataagataccca
attctgacggatccacattattttgtgcttacctcatttttattccgttaaaaggaaaatgtaaagattttgcattcctttttactgactaaaaaattac
atcattttcgataataattatgactcttaaacatagtgatagttttaaagtttgctcttcctaacgattggaatgcctgggattaggcagatgattttct
ttttcccccatacccctctattatttaggtgattgagtttaaacccgtttcttttactgtcttcctttgtttagtgttttgggcctcagtatacttaaag
agtaatactatttttct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RSRC2:NM:023012:1/10
0 chr12 125471070 125471368 1000396 0 + Yb8NBC225; 2166; RIP_Alu_chr12_125_01 GAGTCCAGCCCATTTTAGCA CATGATGGTTTGCTGCAACT SINE Alu Yb8 gcctcccgggttcaagcgattcttctgcctcagcctcccgggtagctgggattacaggcatgcaccaacacacccagataattttgtatttttagtagac
actgggtttctccatgttggccaggctggtcgcaaactccccacctcaggtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagcc
accgcgcccagctcaaattgcattttaaagactgcaagcaaaaattgctttatttgggagtttccattatgatgacacagcaaaaatctcagtgtatccc
ctacagtctggttcaacaccatccatctgactgagtccagcccattttagcatgggacattgagtatgttttcataactgttatcAAGAAGTATTTTTAT
GCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCGGGAGAAGGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAA
AGAAGTATTTTTATatgcttcacactaattaaaagatgataaagtttgatatgagaaattaaatgacatgtttgtgctgggtaatattccagtggcctct
tggcacataatatggttaatatttcattgtgttaaattagagaaggggttgtaagagagttgagtcactaaagcatgcccagggctctagactaactgaa
ctaaatatagcaaacaagcataatggcctcgaccacaatcatattgcaagcagtggacaagtttcagaaaaagcaatactattatcacatttaaattgaa
ctgaaattggtgtgcagttttgttttgcatttaatgtttaaatagatcttagttgtatacttctgtaagggcaataaacataagatatctattcccaat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 449 135 NA intergenic
0 chr12 125765917 125766240 1000397 0 - pAlu12-126923812; Yb8AC749; 14203; RIP_Alu_chr12_125_02 CACAGGGTCAAAAGTGCTCAATA CATCTCATGCTATGGTGTCTCAG SINE Alu Yb8 tagacgtggcttctgatttttggttgcaaatgggtttcctttcctctgttagagtttgcacaagttgttccctcttcatatagcagagaggagattctca
ttctaaagccagccagatcagagcaatgactgcactcccagtggagaatagtgttgggttcacacatgacaggatgtttctaggatttgcattcattttc
tctctgaaagactatgatctagcttcctaatcctctatagagtttgcaaagtgttctaaagaaactttccttccttcctcccttccctcccctcccctcc
cctctcttttcttctttcctccatctccctgcaaaatgttcacagggtcaaaagtgctcaataatggtttacagggtagacttttAAGAGAGAGACATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGACATCCatattggctaaactaactaagcaccaactctgtgctgagcgctgctttaagagtcgtactt
tcatcgtcttatttaactacaacaacctctcattcttatttaacaacaatgaccttcctcattcccgttttagagatgaggaaagtaaagcttggtgctc
aagagcttgttcgatgtatacttagagagatagtggaagggctgggatctaaatcagacaggtccggctccaggtcccaagtgcctgagacaccatagca
tgagatgaagtgctaagatcacttcaagcatgatgcagggagggattggaggaaagtgatgtgagttacatttgcaccacagatgacttgcctgtggtgg
attactgtgccagggagattgttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 667 328 NA intergenic
0 chr12 126226396 126226705 1000398 0 + 668; RIP_Alu_chr12_126_01 NA NA SINE Alu Ya5 gaaacagagtcttgctcgtcatccaggctggagtgcagtggtgcaattttggctgactgcaccctctgtctccagagttcaagtgattcatgtgcctcag
cctccagagtagctgggactataggtgtgcaccaccatgctcagataatttttttgtatttttaatagagatgtggtttcaccatgttgcccagactggt
cttgaactcctaggctcgagtgatctgcctgtgtcggcctcccaaggtgctgggattacgggcatgacccactgcacctggccatatttttaatatttta
atctgaacaatttagaatagaatatagagaaaacataaagaggaagagatatgaatttaagtgggtatatttcattggacgagtAAAAACTCATTGCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACTCATTGCTTCaggtcagtggacatcgtacctatcatcacagatttcttggtcaaagtggcacccaccccaagacttacgtaagt
gtttctattggtcaagtgcagtagttcacacctgtattcccaatattttgggaggccaagttaggagaatcacttgaggccaggaatttgagacgagtat
aggcaacataacaagaccccatctctaaaaaaaaaaagaaaatagcaaaattagctggacaaggtggttcatgcctatagcctcagctactctgcaggct
gaggtgggaagattgcttgagcctagaagttcaaggctgcagtaagctgtgattataccactgcaccccagcctgggtgacagagtaaggccttgtctca
ataaataaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr12 128626257 128626571 1000399 0 - 449; RIP_Alu_chr12_128_02 NA NA SINE Alu Ya5 gcatatatgtttatacacacctatacacatacttatagacacacatatacaaatatatacatatatatattctgttgttctgtttctctggagaaccctg
atacagtcaccattttcatggagctcattctgtgaatctattttaattacaaatccagataattattaattgtaaaacgttatagtaagaaaaacccaag
caacacttaagaagaaattgctacagtttcaacccacaccatttggagttaatttttcgggcagcattatcgcggagatggtcagtgtaggtagagggta
tgcaaagagaaagcggagcttgcatgcaaagacgcatgggccgaaattggctcccacatgtgaggactggcctggaaaatacttAAAATGTATCTATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGTATCTATCTGcagacataattgaattaaccatccacaaatctacaggtttcattccagaaaaaattcattccagaaaaa
cggaatttttgtctttcattaaaaagtccaatctgaccactaggcccgcgtttctccttggtagcaattggtctgagctttctggcatttacggatttta
gcaaggcaggacttctcagtctggcacatggacgcagcgctcactgccttctctttgatacccggtttgtttaccttaccaaccggccccggtaatcact
tcaggtttgaccattgcagtcaaggatatcttcacattatttagtgagagatgtctaacaccagcatgcaagcgagtggcaataaattatttcagcagac
agccgctggggagcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:TMEM132D:NM:133448:2/9
0 chr13 20628918 20629223 1000400 0 + pAlu13-20660817; 20606; RIP_Alu_chr13_020_01 NA NA SINE Alu Yb8 gatgtaaaacgaatgctcaaaaggaaggtcatcaattataaaaattatgaaaggagaacatgaagtatcagctataattttttcatgcataaaggggtga
tatagtaaatataaggcttccttccttttacaaagaaataaggagagatgaagcaaccatagggaagtggaaactatataattttcataaagacagaaga
tgctccttcttcatgcaatttattatatcttccagaaaagcagaaaagacagagaaaaaaggataacaagtactttattgatatcctagcatgagtcagt
tctaatggcatctgagtattttccgaagtgatttatccttctcatgggtctccataagtcaggaagacttctagaatggctattAAGAATTCCACACGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAACA
AAAAAAAAGAATTCCACACGTGtaagtaataattgccaaacactgtaactcctattaaggagggggactgtcaaagaatcagactggttatttagaattg
gcagttgttataagtcattagtaggccaatggtaactgctgttaaatactaaagaatcagatacagtcaggcatcacttaacaatagggatacattctga
gaaatgcattaggtgatttcatcatgtgtgaacatcacagtacttacacaaacctagatggtataccctaccacacacctaggctatatggtatagacta
ttgctcctaggctacaaacctgtacagcatgtaactgtcctgaatagtgcaggcacttgctacacagtgataagcacttgtgtatctaaacacagaaaat
gtacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C13orf3:NM:145061:7/9
0 chr13 21421532 21421848 1000401 0 - pAlu13-21453430; Yb8AC1648; 14345; RIP_Alu_chr13_021_02 TGCAATGGGCATCAAGATT GGAGGTTCTGTGGTTGAGGA SINE Alu Yb8 attagtgatattaatcattgtcagtttatttttcctcctattttttatttggttaggtgctgacatgtataagctttaagtaaatggaacgtccacttgt
attttattgcttgtcacaaaccctcaaaccacagcaacagtcacagtttatgttagaaacagcaaaatcgatgtgaattctggacttgacagtgacagat
ggaggcccttatgcagatgtgctcgctgcttcgcaggacttgaggtccttgggaattctgtgtgttatttgtgagacaggtgactcggaaggcagtgtgc
ccaggcagcagctcccctccagctcccacccacaggactgcagcactcggctcatttgcaatgggcatcaagattgactttctttAAGAAGTAAACCCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAAAATA
AAATAAAATAAAATAAAAAGAAGTAAACCCAGaaacatagaagcctgtggctatgtatcaactgccttcagggtttccgcagtctgtcctcaaccacaga
acctcccaggggaggtaaaagctgagctcatggctgggaaccagaacaggagcctcacgcagtcccagaactgctgggtgacacctggtaagtctcatct
ccctttgggacctggtctcctcctccaaaaatagtcagtagttcctacaatgcacattttaaggttttcatgctcaaaaaacatctgtgagcacttacta
tttactgggagctgagtgacggtagggccatgtgttctcactggggaagccatccaacacactcccttccaggtaccatcctctcacacctgaaaccctc
cacatatccgaggagga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 450 118 NA intergenic
0 chr13 22955657 22955973 1000402 0 - 238197; pAlu13-22987554; RIP_Alu_chr13_022_01 NA NA SINE Alu Yb8 aagaagtcttatctgagattcctcttatggaacaaagttccatcaaagccaatttaaaagcctatgtaaaaataataattatttttgctgcactgcatac
aaatacttaggccaagtataataaccaaaccagccctaccatgatttatctttagtaaaatggggaactggagagagaaaaaaattatttcaaaatgatt
atatatctgttgttagattctagtcttgcctaatgtttttttccaatttttattattttctacagtttggaccaaattctaatttttcttggctacaagt
cttcaaaataatgttttcaatttttttccgtctctttttcatttttcctaatttgaagtcactgaaaactaagttgttcttctttAAAACCCTGCAAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAACCCTGCAAGCTgaagacagacaacttaaacttcggcagaaaataacagtaacctgtttacatacataaggcactttcat
gcctgcctactaatgtatggacttcagagtaatgtggcccatatcaaattttttttttgagaaagggtatctatcactctgtcacccaggctggagtgca
gtgatgcgatcttggctcactgaaacctccgcctcctgggttcaagcgattctccttcctcagcctcagaaatttgagacaggtctcagtctcaaatttc
tgaggctcacactcctatgcaaggaaggaaggcaacatgttttctaatgccacatgaaattaaagcacaaaatgaaacttggatgcttgaaagaacagac
tttctgtaagttattgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 22967369 22967660 1000403 0 + 14819; RIP_Alu_chr13_022_02 NA NA SINE Alu Ye5 tcctgggatctttaaacagccagagtaaagaaggcatccaagaagtttcttcatttcccctttccttaaaagtcaaacatttggactggacacggtggct
cacacctgtaatcccagcacttttggaggccaaggtgggtggattacctgaggtcgggagttcaagaccagcctggccaacatggggaaagcacatctct
gctaaaaatacaaaaattagctggaagtggtggtacgtgcctgtaaacccagctacttgggaggctgaggcaggagaacctgggagatggaggttgtggt
gagccgagattacaccattgcactccagcctgggcaacagagcgaggctctgtctcaaaaaaaataaataaataaaataaaagttAAACATTGGAGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACATTG
GAGTTCCataaaaagtcaacaaagaaaatgagggaagggactcctcaaagaaataatgtaacaaaatctctcagaacgaagagtcatgagattccagatg
gaaagagccagccaagtagccacgcaatttaagagcaccatcataccagggcactttgtccgaaattttcagaattccaggacaaagagaagaggtttaa
aacttctaaaggtaagaaaaaagaaattccatgtaacttcagagatctcaacagcagtagtggaagccagaaggcaatggaacagtggcttttaaaattt
taaaggaaaatgttttccatcttaaaattacataagcccaactgtaaatcaagcatgaggacatataatggcatttttaaatgtacaagttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr13 28789573 28789874 1000404 0 - pAlu13-28821469; 52564; RIP_Alu_chr13_028_01 NA NA SINE Alu Ya5 acagactttatcccctaagtatctgaagttttccctccacttgcctgtgaaagcacatgccacggggctgaccctgccctggccccacagatcagctccc
acacagggaacacgaggattgcagacgcagacggagcaaagcaagaagagggaaaagcaaaggtggccacaacgcaagtgatgataatcactccagtgta
actggaaggaggtgaacagaaaacatgaatgatgtaatcagaaaagacagattctgatgccatttgtaagatgaattgaatgggaacagttcaaggtagg
atttatagggattggatagaatgaagaaaggaaacattatctcgatcagaatatatcaaataaaagaggaaacctggatgagttataaactAAAGAGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAGAGAGAgagagagcgcgcgcacaagcgaactcaggagagttagatgcaaggactagaggaaaggaaatcagttttcagctgccaatagtaatttt
ttaaatattaagaggaatatctgatattgaggcactaaagttaataggagaaacaatctgaatactgggaaggtggattttaacctatttaaggtttgtt
ccatttcaacacacatgtactgcatgcatgaaggtagaaattgtagctaggaatttaagggagaatagggaggtttctgtattcaaatagaggcctagaa
aaattaggcctccattagaagcctaattattacctggataagactaagggataattaattctgaagattattatgaaaagataaggacagaagagtgaac
aa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KIAA0774:NM:001033602:4/14
0 chr13 28852772 28853081 1000405 0 + 30989; RIP_Alu_chr13_028_02 NA NA SINE Alu Yb8 tagagacaccttccattggggaacactggctcagaacagccaacactgacccttatgccagacagccgtgaatctcagtgacattacagaatagtttcag
actgtaaactcccttgtgctactgtgaattttgttatttgaagcaacatatgtaaacacttgcttcatctttaaagacaaatagtttgaagtggggagtt
cccaagaagaagaggattcctctgccctactcatttctctgggggtttgacttggcataaccagtgagtcgtgatgtgttgattgtctcactaacttcca
ttcctaatagattgaattgttcagctagaagaaggaacacacgagaggagatgggttcatgggtcagtccctttatcagtgaagatAAAAGACATCAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGACATCAGCTttggctgctgactctcatgctggagggcagctgtgactgtcagcttgtgcatgcccctctaggaaaatctacattg
attttaggaggatgatgctgtagcaagggaagaaagaggtggaacaacccaaatgagacttgaagctgcctaggatcctttctgcagctgggaacctaca
gctgggctctcaggggcatgtatctgggcttctgcccagatacagatgctggtattgaggaggagagaggaagctctgtgccaggaaaaaacttaggaca
gataaagtagactagatagagtgagaagaaagtttgcaactgtggcaagcaaaggaggaaaatgcccaaaattcccaacacaataaagcaaggtttgata
ttgtgtaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:KIAA0774:NM:001033602:6/14
0 chr13 41053117 41053437 1000406 0 - pAlu13-41091650; 13462; RIP_Alu_chr13_041_01 NA NA SINE Alu Ye5 aaaaagaaacttaaacgtattgtttctgtgaaggcatataaaccatatcctagggcagtggttttctaacagtgtaacaagaacctttgaaggatgtttg
gcagtggaggggggcagtgagtaggcagcactttgtgccccattgccctccatccccaattcaactacaacaatttcacatgtatagataatgcaggatg
tttcataagctgggcttttgtgcagtatttcatttgaaggaagggttccactgctaacaaatttttaaaggaaaggaagaattagaaagccattgtgtta
gggattatgtaatgtactggattattatttctcacaggctctgagggctttctttctggaaaaggtgccattgaccctctgattTAGATGACTCACTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC
GTGAACTCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGACGACAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA
ATAAAATAAAATAAAATAAAATAGATGACTCACTCTCccttgacagaagaaaacaaggcattaggtgttcctaaaactaagagaagcaggctttctcatt
acaattcttaaacataccattaagtttatatagaatttggggggtaggaatggccttggaaattattttcaccaacctttttgttttacagaagagaaaa
caaagattcaaagaggttcaatgctttgcccaaggtcacaccgttacagtgcaaagccagcacttctgacttccacttcagggctcttagttgatgtttc
atccctgtttcttatagctgttttatctctgttcaatttgatttttttaaactgtaattcaggagcaagtgtatcatttatgtaaggtactctgtcttct
cctacccttggcacctcacca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KIAA0564:NM:015058:42/45
0 chr13 72972923 72973240 1000407 0 - 237949; RIP_Alu_chr13_072_01 NA NA SINE Alu Ya5 tctggagagccaccgtttcccagttcatagatggtgccctctcactgtgtcctcacaaggtggaaaagggagaactccagtgctttcagccccttagcag
ggtactcatcccattcatgaggctctacccacctcctaatgccatcacattggtgaataggtttcaacatatgaattttggggggtacacaagcattcag
accatagcactttccaaggatcgctttgcagtttcctattctcagatgaacacattcctaaatgtaacagatctgaaagtgctggataatttgaatgaat
gctggttacgcaaagaaggcatatatctttgtttgataaaaatttgttacaattctctgtgaatggagaaaagatttatcagatacctttAACAAGATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
AGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTACGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACAAGATAGaaaaaagccaaatgcttctctcttagataaatagaaatgaaggtctgtcttacctattagaccttgattgta
agtcattatctcacaggggtctgttttacttaactaggcccaacatccaggtcaggaagagcttttcctctagccgattcatatgtgtattcacctaaca
gatgctttaaacacatattctctgcaaagctgtatggcttcgctaggagtagagaacacagagatgaacacgatagggtctttgtccctgataataactt
aaagatccatcaaagttgtacagtaagtaacaataagatttctgttacagcacagtgccaagtctgagctcctgcctcaactttcacagattaatccttc
atagaaatacattaatca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr13 78559083 78559403 1000408 0 - 6509; pAlu13-78597629; RIP_Alu_chr13_078_02 NA NA SINE Alu Ya5 aagctgttcatgcctaacttacctttctcaatctatttcacctgcttccattttttttttttgtttagtaaacatctgctttctattagattgttttatc
cccttaaccttcataaatgacaattaagtccatctagtctgtcaatagcatgtcatttatttgttgctacagctgagcctgaccttcattgattttattg
gagtaatttgctggaaatgattttttaatgttggatttattgcccaggcacttcattgtcagataattgaagtaaattgtatttttttttcaaaccaaaa
gcaagaagtgcaggaaagagatatatatattattttgaataattatttcctattgggaaatattactattgaggtagagagacattAAATGTGATGTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATGTGATGTCATatacttttcaagtttgcaaacatagattgttcttgagtcgtgcacacttttctccctttttggct
tttccttaaggatagctgaggtagaaataggagttggtaatgaattacattcaaaaatgatgttgcaaattagattagctatatacctaaatctatcaag
tagctacaccaccacctcttacataatgggccttgctattgtgatttaactgcaggttaaattataaatatgctgatgttacatagttaatcttagcttt
tacaaggtattatcttattccctcagtatcagtgttaacaaggcttttttatgttgtgcgtttggttctccaaaaattttgattgtctgcccagatgata
attagtatttcagtccctaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 79097095 79097096 1000409 0 + 22268; RIP_Alu_chr13_079_01 NA NA SINE Alu Yb8 gaatttttttcatattttactggccagggacccactgatgtaggtctcaagaagttatatgtatcagaataactttggagcttcgtcaagttattcacat
tgaccccttgccccagatttgacatatcccccttttcccaggctgggatctactttttctaagttaatacattgtgtgtcttccccaggattttggcagg
tatcccatagtacatatcaaaacatgaaaggggtaaaagaatgggggcagggcaaagttgtatagctttgaaatttctcacgggacattctgatacccca
gccttcaaccctcatttgaagacagttcttctctacatagtgttaggagggcttacaagtaattttcagggactcacgttaacttaAAGAAGTACAGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAGTACAGGTGcctacagattgattggggaaataagctggggacaactaagtaatatggaggccatctatgtagcctgaactatcattg
cgtgttaaagtaacagattcaccatcattaagatttaggcaagaggaagacatgcttagctttcaatgggcaggaacctgctaagttactgaactttcaa
taaaggatatagcgggtctgattttgcttggccgtttttcagattttctgtgctttaaaaagattttgtgaatcacagaatgtcttctgtttcgtggagg
agttgctgtgaaccttccatagaagatggtatgccattttaccactttgtttataaaatttattcatattggtatattcattcaattactcatttaataa
attcttag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr13 81787213 81787538 1000410 0 + Yb8NBC480; 239124; pAlu13-81825749; RIP_Alu_chr13_081_01 CCTCTCTCACAAACAGTGCAG TCGCAAGACACAGGCTATCA SINE Alu Yb8 ctcattattttgaacactgcacactagaaaaatgcttttttctctctctcttttttggtagattgtgtatgaataatgggataaaaattggaataaagag
aaagtatatgatactcaccttcatctgtcttcagagttttagatgatctccagtctgtttttctaaggttagaagacaagacaagtatgaataccttaca
taacacctactgtagttaattttaaaggtcactcttttttttttcaaaaataaaaatgacaaaaagttactggctcatctcgtcttttctgcttttcctc
aagggccaggtctctgagttcctctctcacaaacagtgcagtgatattatgtattactcttaccaatttgtgcatgtgattttAAAGATGGTATCATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGGTATCATTGGgatactttgaataatgatagcctgtgtcttgcgaatttagctaagaatctttcctct
ggaatcatttcagatgaacagtaaggtaaaatacagtgaagacaggaaaactaccgattctttgaaggcagtgtggcagcctctatgtcctagttttgtt
ttctgttaatgtttattcaaaatttaaaaactcaaataaaaaatggtattccaaattttatgcctattacaaattaactacaatagaaaaaatagagtat
tatattctcttctaaacttagttagggtaacataatttaaagtgtattaatttgtcatgaattattcaatcttgtttctactattgtggtgttctcacat
gctgaatattaacttgtagacatcaa UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 65 457 114 NA intergenic
0 chr13 89219385 89219521 1000411 0 + 16768; RIP_Alu_chr13_089_01 NA NA SINE Alu Y? ctattagttgtaccttaaagtttctgagcctgccttattaaattttcttttacatttcatatgcttttgccaatttgcagctctttctaagagaattcca
caattccatattccacatgactaataagttgtatccattttgttctttgacaaactaactagtttatttatgtgtgagattaaaactacatgaagtttct
ggaattataacggttcccagaattacacattttgtgataaaattagtggttctaaagctatatggatagttaagtaagaattcccttcattttcttgaaa
ataataatagagcccatgattttcccagccaactggccctcgggattttcttttggaaatggacctgtttactgaaaattaattAGAAATGACCCACCTG
CGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC
TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGACCCACCTGactttgactaagaaatttgctgaatttggcatctagaatagtatttt
gtttgtcttaaataatattttacacaaggcgagattagaaatcatacacacacacacacacacacgcacacacacaaaaagaattgatactctttgataa
ctttttgtcatctgctaacaaatgcttgtatccatgacagaatcctgcctgagaattttgttctttgtaatatactacctggagggaacactgtagtgaa
tgcagcctcacatccttcacctacctttattagaaggttacaccacacagcaagaagaatctaatgattttgaattaccgaaattgtctttgctgtttca
taacagcgtataaaattaattgtccaaaaccccactt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr13 89348563 89348564 1000412 0 + 5444; RIP_Alu_chr13_089_02 NA NA SINE Alu Ye5 ttctcatctattgtgttctacctttctttgaaagcctactacttagaacaggctaaaggtggtgcagttctaatgagctagaatttgttaattaagtggg
gagtttttcaacaccaactctccaatatggccattgaaaggatggaagcatctgagctatggagaaaagtcactgcaacatacagactttgcagagcagc
aaaatcaaaagtaatccaagcagcttattcagaatcagaaaagacaggagaattaggcacctcaatgagctgactcagaaacaggcacaaatcataactc
tttttctctaaatattctaggaaaagaagaatccttgaaagtctatgatttcttatacctaagggaatgtgtatcaggagagaggtAACAGGAGACAGAT
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGTCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATA
AATAAATAAACAGGAGACAGATctgagattaaagcagttttccttgaaatccattatcagcagatacgaaaataccaattttaagattgcctgtttcatt
ttggggccagtcctcctctttagtcaaactttgtacccctgggctgtatgttatgacagttgtcacacccaccactgatccaaacaaagaatgtctggaa
gagttcaatttaattctgtaattgcaacagaaagaaacagatgaaaaacatagaaaatgcttggttgccatttgccaatttaggcaactgctctgatata
atatctactgttcaagcaaatactaatcacctacatatctgagtactaacttaaatgtacttttaagtttctgataaaactcttatgagcacatgtcaca
ttcttctg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr13 91077266 91077584 1000413 0 - 22344; RIP_Alu_chr13_091_01 NA NA SINE Alu Yb8 aaacttcaatgagtccaagtagacaaactttattttatatttcaagtacctgtttcaagattcaacccaattagagatctccccagtgtgtcattttttc
aggccaaggacaagaatcaaataatcctttttattattattcaaacaccatctatagagatttagagtctgtactactgagaaatcttttcctattccta
atagatatgtctggagagtgacaattacaatctaaggtgtaaaagaaaaatttaagcaaattcttcctcaaagaaaaaagctcctcacactgtcttccac
aatggttgaactagtttacagtcccaccaacagtgtaaaagtgataccatttctcacatacatcatggaatactatgcagccatAAAAAATGATGAGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGCAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATGATGAGTTCatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcagactatcgcaaggaca
aaaaaccaaacaccgcatgttctcactcataggtaggaatttaacaatgagaacacctggacacaggaaggggaacatcacacatgagggcctgttgtgg
ggttgggggaatggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacgtgtcacatgtttacatatgta
acaaacctgcacgtagtgcacatgtaccctagaacttaaagtataataaatatatatataaacaaataaaaaaataaaataaaataagctcctcaatcac
tatgtctaaaaacattatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:GPC5:NM:004466:2/8
0 chr13 97492756 97493061 1000414 0 - 238705; RIP_Alu_chr13_097_01 NA NA SINE Alu Y ttgcagtgagctgagatcaggtcaatgcactccagcctgggcgacagagtgagactctatttcaaaaatcaaaacaaacaaaagaagatgggcataaaca
ttttgatgagatccaatttaaaaaatgtttcttttatggtctgtgtttttgatgtcatgtcaaagagctctttgcctagccttaagtcctaaacacacct
tcacatgccttcttctaaaagtgttttatgtattccattaacattcatgacttttttttttgagacaaggtgtccttatgttgtctagtaggcaggccta
gaactcctgaactcaagggatcctcctgcctgagcatccccagtagctggtcaaagccaccatgcctgaccatggcattttaaaattaATTTTTGAATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATTTATTTTTGAATCCactgtgaggtttgagtcaaacttcactttgtgcctacagatgttcaattttccagcatcatttgtgagatgactatctttcc
tctattgaattgatttgcacctttcctagaaattcattaggcctattgcactggtctgtttctaggttctccattctgttccattgatttatattctgtc
cctcttctgctgccatgctgtcttttttttttttttttgaaagagagtctcgctctgttgccctggctggagtacagtggctcgccatctcggctcattg
caacctccgtcccccgggttcaagcgattctcctgcctgagcctcctgagtagctgggattacaggcacgtgccaccgtgcctggctaatttttgtattt
ttagta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr13 102729654 102729959 1000415 0 + pAlu13-102768190; 12423; RIP_Alu_chr13_102_03 NA NA SINE Alu Ya5 caaggagggaaatttaggtcatcatctgacagaaatatccttttgcaaagaaagttgttttagtggaaatgagactaagttttccaggttgcctgtctgc
actgatgaaattaccttcatcaaaacatgtcttttgggcttatgtcaggcgctcaaagagacttgtttgttgccatggttttgagctgtccccataaggc
tggaacagacactttctaggtattggagtaaggtggctctggggttgagaacagtgacaggtgagctaggagcagcattgtcagaactatgcttcctgta
cccctgctcttctcccctgttcccttcccaagccacgcttcacctaaacaaagcaggtgtgacgttagatggagagaacattactacatatAGAAAACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAACCTaatttcagtaaaccaggatttcaatcctcattctaccacctcccagtgacgtgactttaagaaatgtacttatgattctgaatat
cagtttactcaagtatattctccaaagtgggaataacctttgtgaatcactggaagatgtgaataaaatcatgtggtaagtactttgcatgatgttatca
tgataagtcctctgttaacattaatttcccttccctttttaggttcatctaagcctttttatcctcaaagaataggtaattaggacatgctatctttgat
gcaaacagtttagagccatgtgtaaactaaacaattaaggtgagcagagaccaggtaagcagacacaatgattaggaaacagtaagttttagccatcagc
caattg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 20605985 20606297 1000416 0 - pAlu14-19526174; 55315; RIP_Alu_chr14_020_01 NA NA SINE Alu Yc1 ggggaccctcgagtcaccgacactctccaggttctctattacgagggcccgcgagctaggagagtgagattttgctaccccctggtgtccattccgtaaa
tactgcccaggggcgggttacaggggccagtgtttaaaaaaccttattcacctgtctcaaacctagctcatctattctcggtgttgagagtgtctgaacc
tttcctcaccaggccttccattccttaaactgcagcaaattgtttagggaacacttggtagggtccaaggttgtccattggactccaaggctcactactc
ttaggtagtggaatataaattaatctggctatgggggtccacaaactcctggaaaaagggagtggatcatttttttttttcatggagAAAAAGGGGAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGAGCCactgaaagtttttgagctggtggggtaagggagtttggatagagaatcagggatgcagttaccccttctttcca
ggagttttaaaatctgtgctaaattacaatggtttattttaagtaagtaagtgacatgtggttgcagcagttaaataccactttctccaaagaatgcagg
ctcttacctaaaagtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtacacaacagagtatgtgttgatacgtgtgtttttagtgggggaatatgaaagggt
aaagttataagggagaaattagaggctgggaatagaccagacttagaagccttctcattcacaaacagttcttaccatatttcacccatttaagactctt
tggggcttctcaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 25771459 25771758 1000417 0 + 14794; RIP_Alu_chr14_025_03 NA NA SINE Alu Ya5 ggggctagtccatcccatctaccatgtgaggacacagagagaaggggctgtctaagaaccaggaatccatcttccaccaaacaccaaatttgccagcacc
ttgatcttggaattgccagtctccaggattgtgaaaataaacttttgttgtttataaactacccagtatatgatattttgttagaatagaccaaatggag
taagacaccaaataaaataataaatttgttacaaataatttattttcaaattggtttttgtttatgcaggctaaacagtctaaaataagaaccatatggt
atttgttagtcctgagttgtttgtttttctttttgcctttacaaatttctaaatcttgttgtaagatcaaatgtatttataaataaattGAAAGAAAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GAAAGAAAGAAaagaaaatagaaaaagtaagcaaccatttatagtatatatgttatatataaaataaaattgttataaaattaaatatactctctatttt
ggatttttttcttaatatacgaaaaccattttccttttccatgaaatatttcatcatgtcttttcaatagtttcctagtactatattatctgttaaaaaa
tgaaagcttgacttttttgaaaatttctttatcctttgaaactctgagcttttatctataaaatagaatttgtggggagagagaggcaactaaggctgag
ctatgatggagtgtctatgaaaaagagtatgttcttgtcagtgtaactaattctactgaggactagaggacagtcacaatgtgaaactatgttttacaac
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr14 39662196 39662197 1000418 0 + 31370; RIP_Alu_chr14_039_01 NA NA SINE Alu Y tgcatatgaaacctcttaaagagccaataagattaaaaatagatcaggattaaatagggtattaagatttctactaccagcataaaagtgtaattcattg
tactgtaggcagtgggaaagaggttttatggttaggctttccttttttgatctacacaagtcacactggacttagtgaagttttcacactacatataaag
cagctgaatttatatcttcagattctaaggttttctacatcctggataatgtttaccttttagtgtaatatacagccaccccacttaagaaactggtctt
attaacctttgaaaatctttaagccttaccctgtgtttaacatattcatgcttcactgagtaatgttctgtgattcattctcatcgAGAAAGAAAGAAAC
GGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTC
TCAAAAAAAAAAAAAAAAAGAAAGAAAGAAACtttaaagctagctcaagttcacatttaccttcttagattatgccatgacagatttcagtgcttctgat
gccatctgtttggtaggaaagacatttcctttgagaggcaggtgaaagggcaacaagaaagtcagctagtagataatctttagtttagggcctgtactct
agtggtaaaaagtcattctagaatttaatgattactttgctttttctgtgcttcctttcatactgaccgagttgagcatatagctgggctaggcctgacc
aaaaaagaaaaaaaaaaaaccactttggcactttgcaagaaagacaagttgtctctgtttaaggctgcttttaccatgggaaacaatcagaataaaagat
atatagtagataagaata Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr14 41556086 41556386 1000419 0 + 20305; RIP_Alu_chr14_041_01 NA NA SINE Alu Ye2 aaaaatttaggctccacactgaacatcctcagggaaagatgaaagaataaaatgccgtagagattgagatgcacagctggataatgtagagatagatcat
ttaagtcaaacatgaggtgaaagctgggaaggcttttgcacctgtgcttgactggatgctgaatttcgaacaagttttctgaagggcagagatttttgtg
gaagcatgagttttccactacccaacatagaaaggataaaagaacttgcagttttaggagactagatttacttttttccccaatattatggcctgttctg
gaagtaagtgacagaaagacaaagatcgaacttatgcttacatgaacagctcagggccaaggaaaatgtagccaaatttagcacacAAAAAGACCTGATC
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATACTGGCTAACACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAGACCTGATCttacgcaaatttaagcagaagagaagcaacctgaggaaaaacaacattagttaagcaaaacaaaataaacagtaatattgggtgg
ttagagtgaggtccctgacccacattcgcgtcttcatccataggggagagttagccattgggagttgatttgacatgattgtactccccgcgaagacatt
ggtaatcagaacactgagcttcaaattagggaagagttaggtgtagctctgcagaatcaggaagtaccactggtgtcggctattctccactgttatacac
agaaatagcaagaaccaagacatcccctcttattgttgtaaaaaatgtgaacgtcctctgagtgacagtgccgggaaactggcaaagtctccagaccggt
g UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr14 47896573 47896885 1000420 0 + Yb8NBC466; Yb8AC818; 14503; RIP_Alu_chr14_047_01 TTGAGGCACTAGACTTACAGAATTG CAGGAGCTGCTTTCACCTCT SINE Alu Yb8 agaagtctgagatcagggttcctgtgtagtcaagttctggtgagggacctgttacaggtttgcagacagccacctttttgctgtgttctcacatggtgga
gagtgagctctggtatctctttctcttcctattagggcaagttctgttgagttctattgagtcagggctcaactcttttgacctcatttaaccttactca
tcaccttaaagaccctatctccaacacagtcaaatggagcatgacagcttcaacacacgaaatttagggagacacaattcaatctataagcactgtttcc
ccataatcatgtacatatgaatcttccctgtaccatcaggagctgctttcacctctcccttaattagattcctagattattaaaaatAAAGTACACACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTACACACCTtttcaattctgtaagtctagtgcctcaaaaataacaaatgtttgtttaaccaaaaatttctggttggatgtaca
aaaatcatctcagctatcctgtaagaagagaaagttaactgcatgtgaaattaattgtaactgaagaaattgccaatatagaccatagagcaggccatgg
tctacaagagacatggtagttgaaagacctccagtaatctacgtatttcattaaaatatacttatgcccactggcctcaaacatctctgctatttctaaa
aatctcttcaatttgtcagaataaccaatgacaaaataatggagaactctgccataaaagagcaagagaaaaagtcacatagtccaaaatgaataacctt
ttaatttacctta UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 427 92 NA intergenic
0 chr14 49028207 49028344 1000421 0 - 12195; RIP_Alu_chr14_049_01 NA NA SINE Alu Ya8 ccaaagagcctcttgttttcctggcccctccttaacaatttacccgatatcaatctactgctgataataaatgaaaaaggtaatgaaaaaggggagtttt
ttttttttaaacaaatgtcaaaaaaaccctttaagtatttctgacattaaaaaaaatgttgttggtccttccttatttgcatggagctttatgtggttca
gaaagcccatctgtaatccatttgagtggaagtcccatttgtcactgctgtcaggatggtaaaacacatttgaaacctttttgctttaaagaaaatagaa
ggcttttctgcactttacattgagctgaagactttgccactctcagggaaatgtcaattctgagaaagacttgtgcaaaatgagagtAAAATAATTAGTC
TAGTCCTTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG
GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAATAATTAGTCttgaaaagtgattttactttttgcttaaacacgttccattttccccaaa
gtccccaggttcctaaaacaacaagaagtcatgagagggtgagggttggggttgtcgtcgcaagcagtcttgacttcatttatccactcaatggagggat
cagcagcatgaacattacaaaatggcagagaatccacacagcacctccatttagcattggggtgtgttttatagccgcttttagaataaacattttgggc
caggcgtggtggcctgtaatccctgggatcacacctgtaatcccagcactgtgggaggccaaattgtgcagatcacctgagctcaggaatttgagaccag
cttggccaacatggtgaaaccccatctctactaaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr14 67446766 67446909 1000422 0 + 7444; RIP_Alu_chr14_067_01 NA NA SINE Alu Y? tcctcccatcttggccttccaaagtgttgggattacaggcatgagccaccacatgtggccaaaaaatactttttataaatacctcagttgcataatgttt
tctccattatcaacttgacaggcctttgtttaaggtttacggttataagtacttatttgtgtaaaatttaagatctatcaatatgtctaatttttcagaa
atttttttcttcaacattttagcctttggcccattttcaaattgtatgtaggccaaggcatacacagtggacattgtgcagctgcgtatacgaatatagc
caacattaagaggtcccttgcaataatgctgtttcagaaaggatgtttactgttcttttgaacatagttttcttgtttctgctttaacttatAAATATTT
CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG
ACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTTaaataaaaataatgtttcactgaagaaattgtaaaagtgaactatatg
ttaaaaataatctaggaaactaaattactgctattccactttgcagtttgatattgctcattttttgactcgtaaagtcagtgtcgatgccttttaactt
tttttttaaaattttactggatttgtattttaccatatttgtgcagtgactttgattaggtaccaattgaattcagattaaaaagcataaacctacatct
gaagatagcctagtataatttatattgtgcatcgttctgattttgaaataataattctcctttacaacgttagggctgaataaaagatagaatccttatg
aaatagtgagcccaatgtcattttttttttttttgagtcagagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:RAD51L1:NM:002877:7/11
0 chr14 70507590 70507913 1000423 0 - pAlu14-69427783; Yb8NBC9; 239173; RIP_Alu_chr14_070_01 GTCCCCACCAATCCCTATCT TGCTCAAAGTCCCACAGCTA SINE Alu Yb8 tcaaacctgacaggcatgctcttgctttagggctttgcccttgctgttccctctgcgtggagggggcccctcccctcagatatcctgagagctcactcct
ccttcttcaggtctttgctctcagagaagcccgccctcaactactctatttaaaattaaaatttccctagtccccaccaatccctatcttctgtctctac
ttactacagtatatgttgatcgctaccagtatgattccatattaatagtagagaagccacatgagggtggaactttttgtctttttgttcactgatttat
ttccagtacttaaaacagtgccaagagtactcgacaatatttgttaaatgttaaacatatggaaaaatgttgcatgataaaagcaagttttAAAACTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAACTATAtaaagtagtatagcatagattttaaaaagcataattcaaaactagatttgaattataggactgtcac
tttgtagctgtgggactttgagcaagtttcttataatttctctctaagcaataacatgcttatctgtaaagtgagaataataacagtgccaacttcaaac
gtttatagtgaagattaactgggtaaatgcatataaaatgcttagaagaggacttaaaccaggggttgacaaactaagtcccatgaagccaaatccagcc
ctcaaacttgtttttataaaccaaattttaggatggcacagccatgcccactatttatgtatcgtttatgactcctttcactctacaatggcagagttga
gtagctgagtagcaagagagacca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 55 655 322 NA intron:PCNX:NM:014982:5/36
0 chr14 78723691 78723778 1000424 0 + 2570; RIP_Alu_chr14_078_02 NA NA SINE Alu Y tgtaccatgagcggagtcagagcccctcttgaaagcaggttggtaaatttccagaaccacttagcagttttcataggtggcaaggcattgtattgttatt
tttattattgttaggagctaacatttgtttccaggaactgggctaaatggttcaaattcattatctcatttaatctttacaatatttctgtgaggtagaa
agtattgttatctccattttagagatagcagttatagaagaggcatctggagctaaaacagattaaatgaccttttccctcaggttcagagtaagtgtca
tattgcaccccagaataattctgtgctcaccataatgatttacccttctaaaaggtaatataatgcaatttcagaaattaatgaAAAAATGTGTAAGCAT
AGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGTAA
GCATaagaaaaaatagcgaatgtccttttctagcatcacactagattttacgggtgattacaggaagacccttttgagattttcagcaatggacttttct
tggatgagacggaagatgctctcagctggtgtgactaaattgtttgcgacttgaggacatgggtcatgccctctgtgtgtaccactcactatatcctcat
cacagttcctgcataaagcagagattcagaagggtcagtcgagaacatggatgacaacccaacactgtaacccagcagcttgtgtcttggtgtaacattg
gtaggttttgtttgcctttacatttttaccataagaggtcaactagagtttctatcttgttacaagttcattacacaggtatccctta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:NRXN3:NM:004796:12/17
0 chr15 37307406 37307734 1000425 0 + 14146; pAlu15-37099151; RIP_Alu_chr15_037_02 NA NA SINE Alu Yb8 ataagagttttaagaatactgtgccagatagtaggggcagagaccaaatatatatttcttattatatcacaatatcacagatactaattatatgtagaaa
acttcatattaactccagaagttagaaacgtaacaacagtaagatctcaagaaaaatgaaagagacaataaagacaaaaccagaaattaaggaatgagaa
aataggaacaaggagagtggaaaaataaattcaggacatgaataataaatacgagtttgctcaagaaaaaaatcaaataattacacaaaagtaaaattgt
gaaagacagcataatcaaagacacagaggatatataaggaattactctactcacataaattgaagatacgggtgaaataatttttaaaaTTTAATTTATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAATTTATCaagaaagactatagaagatgtagaaaacctgaatataccacaattctccgttgataaatt
tcaggaagagaacagtggagaaggtggtaagaaaaatataattataagctattagttaatcagacaaaagaaaggcaattagaaactctaggaggaagaa
aaaaagaagctgcacttcaaggttacacaagtaaaatgaacaaaaagagaatttttaaaagttgaggcttgtaacattctcatttgtgtggcataggttt
acaacatggtattacattcccaaatctgcaggtttaattagctcattttgaacaatagtttgaaattaaaacattacaacttctatttattggctttcaa
ttttcaagatccatgtaagggaaagcaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 39805041 39805359 1000426 0 + 2365; pAlu15-39596787; RIP_Alu_chr15_039_01 NA NA SINE Alu Ya5 tatgggaatgggcagtttacttaaagaataaaaccagtagtgctgggcgtagtagctcatgcctgtaatcccagtgactcaggaggctgaggccgcagga
ttgcatgaggccaggagttcaaaacaggcctgggtaacatagtgagacctggtctctaaaaagaaaattttttttctttatattacctttaattaactct
taacaactaaacctttttttaaagacctaaaatttatttttaaagacctatgcaggcatggtggcatgtacctgtagacctagctacttgggagcctgag
gcaggaagatcactttagccaggaggctacagtgagccatgattgtgccactacttgggcaacagagtgagacttgtactcttaaaaAAATAAATAAGTA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAATAAATAAATAAATAAATAAATAAGTAaacccaggagcctcttaacctagatcttctttttaatttagttaagtaatcaatgcatattttccttt
gtgcacattttttgggggattatttattaacaagtaaaaatgcatatattggtctataacatgacattttgatgtaaattgtagaatggcatacagaact
tcttgatagtatgattttacctcagttgggtttcattgcgtctatattgatataagtgtttttactcctgtactgagttcaggctgtcttttgattacaa
tttgttattagaatgcagtagtgacagcttggtctctggagccagatagacagggtttgattctggttctgcctcttactggttggacatccctgcctct
cactggttggacatccctg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MGA:NM:001080541:9/24
0 chr15 41447734 41448045 1000427 0 + Ya5NBC241; 238740; RIP_Alu_chr15_041_01 GGTTCCAATAGAGAGCAACAGAA ACCTTAAGCTTTCCCCCAGA SINE Alu Ya5 gctattgtcttggatgataagatcagaattcaaaacaacctcaacaaattttaagtgaaatggtaacagaaaaaagcatacaacatggagatcaatagac
tacaaagaagaaaaacaagttctacaaaaatcaagtacaagaataatcaactaggtataaaggcattggggaaagctatcagagtcctggaagttaccag
gtgaacaaaaaaatataacaggttgggctatactgatacaagacattgcaagattctgaagtaaaattcttacttagcttctaacagactttcaggaaaa
taataaacataatttagttccccacaattaacatgatatttggagaacttaaaggttccaatagagagcaacagaaacttaggtttAAAGAATGGATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAATGGATCTTctgggggaaagcttaaggtaacaaatatagtttaatttgaagatggaaaacaaccaaaaggaagatgtgccttc
aagtatagaaaagaatttttatctagaaaataatgacctatactatcatcattaccaagaggaaataaaataattccaagttccgataaaaactagggag
ccattctcttgtggacttatcaagaggtaatatgaataccagaggctaaactacatgtcaacaaccacatattctgcaatttccacttactcctgaaatc
cctttcccactcactattcccaaccctacttcccaacttggaatggcagtctatcttcccatatgaatctactcctcaccgctcctttgaaaaggtttga
gcttctcctttg UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Reference NA 55 392 66 NA intron:ZSCAN29:NM:152455:2/5
0 chr15 43855273 43855607 1000428 0 - pAlu15-43647033; 238357; RIP_Alu_chr15_043_01 NA NA SINE Alu Yb8 tcagattttcacagcaagcttgaaagcattttgaaggttatagtgcatccttaataagtagggagggacattctagaaatatgaaaaaaagacatgcttt
aaaaacaaggactgagcttccagtaatggccaaataaagattctaccagaataaacacccttacagacagctactgtaaaatatggacacattataagaa
gcagctacatggaggcacaagagggtgatggaaggcaggtagagtctagggaggagtccatgcaccagggaagacattacatggagtaggtactccatgc
tgctgcttctagcctgggggtaggttcagttagcttgcatggaacagcaggtacagtgaaaaataaacacattttttctggccttAGAAATCTGAGTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATCTGAGTACTgagtccagggcaaccgcagtcactgaagaaaagggaaatttgggaggaaa
aacagccaggagggggatacccaaattctgcctgcccacatctctggctggctcctgaatcacacatgcatggagcagactcaaagcacctcagctagag
gtaaagaacctaaagagagtttggaactggttaaaaaccaaaaatagtttggagctcatatttaaccaggttaattgtgtgctaaaaggaaagaaacatg
actcatcaaaagaaattaacaaaatccagtatctacaacatgaaatttattgtgtacattacacaatcagaaagtactcaaaatataacaaatcaggaaa
agtgggagccctaacatgacagtcccagaggagct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 49685009 49685332 1000429 0 - 238258; RIP_Alu_chr15_049_01 NA NA SINE Alu Yb9 aagaacaaaactcccatctcacatccacacccccacacacacacatacaaaatctctataagtgtgttggtttaattctaggtctctaatgttatgtgga
ttaatcttcaagatttcagtttaaagtgttgggtagtttattggagtcccatcttttgtcagatggagcactttcatttttgttcctctagatccaagag
accatcaaaatgcagctcagttttaccctcactcttttagattagcaaatgctgttaggacaaattggcattcagtgctgagcacagccttatgttctcc
ttttctcttagattttggcccactaattcctcacagtattttttatttttttagctctttgagtgtttttacatctatgttcattAAGAATATTAATCTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAATATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAATATTAATCTGtatgggctgggccgggtagctcacacctataatcccagcagtttggaaggccaaagcaggc
agatcacttgaagtcaggagttcgagaccagcctggccaacacggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcacacgc
ctgtagtcccagccacttgggaggttgaggcactagaatcacttgaacccaagaggtagaggtggcagtgagctgagatgatgctactgcactctagcct
gagtgacagagtgagacgctgtttaaaaaaaatacatatatttatatgtttttttcccccgttgtactgtttttgtcgagttttggtatcatgctaagat
gttttttgtatatttcatgaagct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DMXL2:NM:015263:1/43
0 chr15 62420247 62420556 1000430 0 - 10196; RIP_Alu_chr15_062_01 NA NA SINE Alu Yb8 ccaggagttcaagatcagcttgggcaacatagcaagactctgtctctataaaaaataaaaaaaaattagctgggtgtcatggcacgagctggtagtctca
gctactcaagagattgaggcaagaggattgcttgagcccaggagtttgaggctgcagtgagatctgatcatgccactacactccagcctgagtgacaggg
caagatgtctttgaaaccaaccaaccaaccaacagaagaaataaatgacagtttaataaatatttcaggccgggcactgtggctcacgcctgtattccca
gcactttgggaggccaaggcgggtggatcatgaggtcaggagattgagaccatcctggccaatgtagtgaaaccccggctctactAAAAAGATAAAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATTGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGATAAAAATTagctggacgtggtggtgtttttgagacagtgcctcactctattgcccaggttggagtgccgtggtgtgatcatgg
ctcactgcagtaccaactacccaggctttaagtgatcctcccacctcagcctcctaagtagctgagaccacaggcacacaccaccatgcctggctaattt
ttaaaaaactatctgtagagacaggattttgccatattgcccagtctggtcttgagctcctgggctcaagtgatcctctggcctcggccccccaaagtgc
tgggattacaggcatgagccaacatacatgaccttaaagtggtttcacagaagttctacctagcaacttcattagccctttgctgcaaggtaattaggct
gcccagaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:CSNK1G1:NM:022048:1/12
0 chr15 79179642 79179643 1000431 0 + 280; RIP_Alu_chr15_079_01 CACCTTCTCTGCCTGTCTGCATC GACACTCTAAGGTATCTGTAAGGTC SINE Alu Ya5 tagacctaaaggtaggtaaatcttcctctcctactatcttcctcctcacgtatatttccaaaggttttttttccctatatttatacaagtaattagcttc
cgtccatttgtttcatcacctataaaataggaatgatctttgcctcatagatgcatgagtattaaagtacataagataatacatgtacggcatttaaagc
agtttgcaaacactcaataagtgttataagaggagaaaatttccacttaaaacttcttccaccttctctgcctgtctgcatcccaggtttttggtatagt
ctgggacttttgacaaagtttaatgctcgttaccatactgatgtattttttttctccaagaattatttaacatctgcattattttgaaGAAATAAGTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAATAAGTATTtcttagttctaagtttaaattatttcagtgctgattatctgtcctactgtaatacagtcttctattatagagttctttattttga
cgtacagatcaactgcatagtatttttatggaaaggtacggcagaggcatattgagaccttacagataccttagagtgtctttctattgctttaaataat
gaacaatggatgacttcttggggtttgaaatcttgctttgcaaactttccccctcagaattttatgtagctgctggagtacactgaggctagctccattt
ttcttccattgcctacaattttctacatgcctagataataataggcatcttcctttatccttgaaataaaaaaattatctactttttatctcttaagaat
tct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr15 99270605 99270899 1000432 0 + 5167; RIP_Alu_chr15_099_01 NA NA SINE Alu Yc2 ctagtttgtcatttgggagtttttaatggagtctctgctctacaaaaatagaatttagcattctgtttatggcttttatgttttgtgttttatttaggaa
agattataaaataattcacttattttcatgggttctggaactatttgttttaggaaatgacctaaaaatctcaatggcacctaccattcattttctgcct
aacacatagtaggggctctacatgattatctgtaattgttataattacaaggaggtgatggttttcctatttgatagttgatgaagttgaggctcaggga
aggcaaagaacttacctaagcaacatagttctaagccagtggttctccaacttgagtatgcatcagaatcacttggaggacttgttAAAATACAGATGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGCAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAT
ACAGATGTCtgggccccaccatagagtttctgattcagtaagtttattagtcttttattgctcctgcaagaagttaccataacatcagtggcttaaataa
cataaatctattatcttatagttctgtaggataaaaatctgacacaggtctccctgagctaaaatcaagggcttcattcctttttggaggttctcaggag
agaatctacttccttgccttttccatcctctagaggctgctcgcattcctaggctggtggccccatcctccatcttcaaagccagcactgctgctctctg
aacctgtttctataatctcattttgctctgcctctcttcttctgccagttttggggacccttgtgattacactgggtctgcctggatgatccagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ALDH1A3:NM:000693:12/13
0 chr16 20686059 20686362 1000433 0 + 20638; RIP_Alu_chr16_020_01 NA NA SINE Alu Y aaaaatgtttttagtgggcagaatagtgtgtattctgtgctacctgttgtgtaaaattggtggagaaataagaatctatactcataatttgcttgaatgc
acataaagaaaccctgaaaagataagtagaaataataatagtggtttcctgggagtgagagcaaagtgggcagctttgagactagaggtgggaggcagat
atttttttttccctctgtaccttttacagtttttttgagccatttgaagatattatgcgaaaaaaaattaaaaacagagagagacaagtagtgttgatta
cttaacttctttcagttgaaggaaacctgatgctaattctgttaagaggagagcagccaaaagcataggttgtgacttgccagcAAAAAACAGGGACCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACAGGGACCGGtagttccctctgtacccaatccccaatgccaaacagaatgacattgttagacttaaggtcttaacctgcagggcaactgg
gattcagagtgattttagttctgttcttaagagcagccttttctcctaaagcctgccaagaaatttttgttaattcttcccaggaacataacagacaagg
cccctgctctggtagaacttacatcacagtgcaaagatcagcaaactgtagcccatgggtcaaatccagccctctgcctgtttttgtatagcctttgaac
caagaatggtttttaaattttttaatggttgaaaaaataactaaaagaggaacactaattcatgacacatgaaaattaaatgaaattctagtgtcagtac
cata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ACSM3:NM:005622:1/14
0 chr16 23436055 23436350 1000434 0 - 31594; RIP_Alu_chr16_023_01 NA NA SINE Alu Ya5 aaaataaataagtaaataaataaataaataggccaggcgcggtggctcatgcctgtaatcccagcattttgggaggccgaggcaggcagatcacgaggtt
aggaaatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaacacaaaaaattagctaggtgtggtggcatgcacctcaggggttctga
gggatgagtaggagtttcccaggtagatgggtgttggaaggctattccaaggagagggatgaaaaataaagcttcacaaagttgttcaggactggaccaa
gagtaggagtcaggggagaggtagaagtggctgctgagaaaccaggcagatgtgagatccaaataataaaacccagattcaatAGAAAAAAATTAGCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
AAAAATTAGCTGGgcatggtggcatgtgcctatagtcccacctactagggaggctgaggcaggaggatcacttgagcccaggaagtcaaggctgcagtga
gctgtgattgcaccactgcactccagcctaggcaagagagcaataaatcttaaataagatttattatcgtacttagcaggaagttcattggtaaggtggg
ctgcagggttggttaattacacgtgtggtgacatcagtgaggacccagggtccttctctctctccaccctcctggccacagcatctgcagcagccacagt
tggctgcctgcagcagtcaggcctctgcacttcctccttcatgtcagctggggagagggtggctttctatggctgtctcccaacagcaaggaaact UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr16 47593590 47593708 1000435 0 + pAlu16-48773173; 15362; RIP_Alu_chr16_047_01 NA NA SINE Alu Ya5/8 agtgcctgccctcatggagctcccagtctaggccagtaatgttcaatagaatgttctgtggtgatagaaatacttatctgtgatgtccaatatggtagcc
attagccacatgtggctactgaacacttgaattgtggtagtgacaggaagtgtattttcattttaaatagtcacacatgactaatggttactctattgga
tggtagaggtctagaggagaaacatgaaaatgtttagcacagagcctggcatacagtcagtattcaataagtgcatctttcctttccctccctccactat
gtggcacctggtaccatgtttgttaactcctctgctgctgttacatgttcttaaggatgagtaaggtcatctcaaacagactctAGAAAGATAGGCCTCA
CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGATAGGCCTCAgtgtggattatttatatgtgtcttccaggattttgcacacagtaagtgctctttaaatgcctatt
aaagagacaatatggtgtaagaaagggaacatgctttggcactaagaagaaataaatttatatcttggctccatcactcagccgctgcacaacctgaaca
agttactcaagctgtctgggtctcagctttctctctgttcaatggggtgatgatgggctactctgtgggggtagttgtgaaaacagatgaactcatgcat
gaaaagaacccagcatggatccttacacaaagctgctctccaaacaggagaaagccaaccagaagacaaatgatgatgcttctttggatgttcccagctt
cacagatgtgggccctgta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 60604378 60604695 1000436 0 + Yb8NBC499; 238240; RIP_Alu_chr16_060_01 GGGGAAATCTCCACATCAAA ACCCCCACAAATGCATACAC SINE Alu Yb9 gttaagataattgaaaaatatattattttttctcattttattaagttttacattttaataaaagcatattaagaaaataaaatgcagaaaattatttttt
aaaactcataatccaaccacatatattggcggaaaaaagattgaatatattgatatatttccttacaggttctcctgtattgctttgcggtatagttact
aatctgaatcaatgtcagaaattaactcctcaattttttttaaggtgggttacctggatatcacatactcattagatataatcatgcatttgggattttt
ttatgattctgtgttgttttcaactggggaaatctccacatcaaaacagtgaatagtggttatagacgtgatttgcattctctttAAATTAACTACTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATTAACTACTTAAatcaagagcattggcaatgtgtatgcatttgtgggggtgaaggtaattgaaaaaatagcggtagaat
gactgaaagtattgaatatgggtgtatgggtgagcaggataatgggcactaatggctcattatttttgtaaatttgaatacatacatctatattcatggt
ttgaagatagatacaaaaatgtttaaatgtattttttcatgttcacacacatattttaacagatatatgccaggcactctgactgtatcacacatatatt
ttaataattattttctatacacattttatatcttgcctttgatatttattaagttgcaaccacactcttatgttataaatcttaattttttaatgacttt
atgctattctgtcacgtg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 58 446 113 NA intron:CDH8:NM:001796:2/12
0 chr16 64039690 64039691 1000437 0 + 9449; RIP_Alu_chr16_064_01 NA NA SINE Alu Yc1 ggataacccaagtcctcaaggctctctcttctctaggaaattaggaaggacatacacatgcatgtagtaaaggcagagcatcccagcatagagtccagag
gagctccgaggagaatggaagcttgtaggggcataggggagctgcttcatattttcaagactctcactgcaatagggaacttaggtaaccaggcttgttc
tcccacaccaaagagaagactggaaactcatggaagtggtgacattcccctaaggcacacattccaggctgagcatttaaatcagttgatacttcttctg
tatcttatttaagactttagtacatgagctcttaggagaccaaaagttattttcagtatcagaaactggtgagtttctaacaaAAAAAAATTGTTTTCTG
GGCCGGGCGCGGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATTGTTTTCTGaaaatagggcttacttctggaaggcaggataatgcacagaacacaccacccctttctccaagatgcccaccatcttaattcaaaa
aactgaatttgtcaccttgcatggaaaaaggaactttgcatatgcaattaagggccttgacatgaataaattatcctgttggacccaatctggttacatg
ggttcttaaaagtggaagatgtttcctggttgtggtcagaaggaaatgtgaccatggaagaagggtcagagggatgcaatgttgctgactttgaagatcg
gaaaaaaaatgaactgtgagccaaaaaatgttagcagcccctagaaacaggaaaaaacaaggacatagattctccccaaatgcctccagaaggaatgc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:LOC283867:NR:027755:2/9
0 chr16 65380707 65381028 1000438 0 + Yc1NBC35; 5511; RIP_Alu_chr16_065_01 CCCATTCTCCATGCCGTGAT TGCAAGGCATTGGGGATACA SINE Alu Yc1 caaacatcatgttctcacttatttgtgggatctagaaatcaaaacaattgaactcatggagatagatgattaccagaggctgggaagggtagtggaaagt
ggtgggtatggtaccaaaaaaaaaaaaaaaaaaaaagaaagaatgactaagacttactatttgatagcataacaaaataaccataatcaataataattta
attgtacactttaaaataactaaagagtataattggattgtttgtgtaacataatgaataaatccttcagtggatggaaaccccattctccatgccgtga
ttatgcactgcatgtctgtatcaaaacatctcatgtaccctataaatatatacacctattatatagccacaaaaattaaaaataaattAAAAAAAAATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCagggactatatcttacttatccctgtatccccaatgccttgcacaaagattggttcctaaaaggtg
attttttttttttttttttgagacagggtcttactctgtggtctgtcacccaggttagagtgcagtggcataatctcggcccactgccacctccacctcc
caggctcaagcaatctcccacctcggcctcccaagtagctgggaccacaggtgcacactaccatgcctggctgattatttgtatttttggtagagatggg
gtatcaccatgttgtccaggctggtctcaaactcctgaggtcaagtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccac
gcctggctgatgaagaaatatt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR;C:Reference NA 60 481 162 NA intron:CCDC79:NM:001136505:5/19
0 chr16 65811178 65811482 1000439 0 - 18088; RIP_Alu_chr16_065_02 NA NA SINE Alu Sp caggagagcatttaaaggattgaatgaggccgggcgtggtggctcacgcctatagtcccagctactcaggagtctgagacaggagaatcacttgaaccag
agaggtggaggttgcagtgattcgagatctagccgctgtactccagcctgggcgacaaagcgagactcagtctcaaaaaaaaatacataaataaaggatt
gaatggatgattaacaatgtcagatcccacaaaaagcccagcaaaatgaagaacaaatattgtccatgagatatgttatccaaggaggccaccaatggct
tcagtgatatttggcatctggaaaaataagccaggtggattgaggagtgaatgagagaagtaggaagtgtagagcgtgacctcgctggcAAGAAATTTCT
TGGCCGGGCGTAGTGGCTCACACCTGTAATCCCAGCGCTTTGGGAGGCCGAGGTGGGCGGATCATCTAAGGTTGGGAGTTTGAGACCAGCCTGACCAGCA
TGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAACTACTCGGGAGGCTGAGGCAGGAGAATCGC
TAGAACCCAGGAGGCGGAGGTTGCAGTGAGCCCAGATCGTGCCATTGCACTCCAGCCTGGGCTGGAGCAAAACTCCATCTCAAAAAAAAAAAAAAACAAA
AAAAAAAGAAATTTCTctacagaaagaaggaaataaatagggcaagtcaggcacagtggctcatgcctgtaatcctagaactttgggaggccgagacgag
tggatcacctgaggtcaggagtttgagaccagcctggccaacacggcgaaaccccctctactaaaatacaaaaattagccaggcatggtggtgggttcct
ataatcccagctactctggaggctgaggcaggagaatcacttgaacccaggggtggaggttgcagtgaaccgagattgctctacttcactccagcctggg
caacagagagagactccgtctcaaaaaaaaaaaaaaaagagagagagagagagaaagaaatagggcagaaatgagaagttgagatgggtttgacaaagac
aaagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:LRRC29:NM:012163:2/7
0 chr16 69721879 69722191 1000440 0 - 13768; RIP_Alu_chr16_069_01 NA NA SINE Alu Yb8 gcaccctgaacacatatgttatttaaaaagagttatttgacaatactgacaggagttggaactgggacaggaattcagtgatcctaggctcccactcagc
acttatgttgctaaataatttgtctctcacccctggtaataccagtacaatgatgggaatatggtcgtatgtcctgggaggagataaaattcagtctgca
aagttcaggagaaatgtgaacatagctctggtgggggcaatgagtggattggggaaagctgctgttctctcttatcacgatggatattaaaagctagaaa
aagagagaaaaggaggtgccttaaggcatagcttgagcattttgtaagctgacagcttggcgattgcctatggttgacagggggagAAAACCGGTATATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAACCGGTATATAtggagttgccagctttgtcccaggaactgcactagagccttgattacatttaaccctcaacacatctttctga
tggagcagctcctgtggtctctagaaggagaaggcactgaggcttagaggaatcagggaactgccaaagtcacagagctagtaaacagatcacagaatta
gtatgcaaacctagtccctgccggccccaggttctatgctccaggtaactaacagctaagaaagaattaaagctaagcaaatttaaaaggaacaaaattg
tccttgccatgtgaggggcagaatagatgttaaatatttaaaaagcagcctggaaaacaggattacctgaaagaaaatatttgtccagatatacataagg
gctcaggagtaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:HYDIN:NM:032821:8/86
0 chr16 85371728 85371729 1000441 0 + 12621; RIP_Alu_chr16_085_01 NA NA SINE Alu Yg6 cgttactatcccatttcacagatgagaaaactaaggcccagggaggtaaataacttgctcagggtcttcaagtaggaagcagcagagccgagattccagc
cccaagctggcactcttcagcactgcacagtccgccctctctgcactctggccagcgtcagcatcacctccagggacagtgcatgcaccaggaaggacac
agctttggaaccatctgcgtgaaaatgcgaatgtttaggtttgcattgcaaaccccactgcaaatcagctgtgactttggacaaagcccatcatttctct
aaagccccaacttctacggattgcatccgccttcccttcttcccgacccccacccccagtaattcctgctccaccttcaaacccccGAAAGGGAGTTTGA
GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG
GTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCNNAAAAAAAAAAAAAAAAAAAAAAAGGAAAGGGAGTTTGAaaaggctgggctcacgtctgtaat
cccagcactttcagaggccaaggagggtggatcacttgaggtcaggagttcaagaccagcctagccaatatggggacaccccatctctactaaaaataca
aaaattagctgtatatggtgacgtgtgcctgtaattccagttactctggaggctgaggcaagagaatttcttgaacccgggaagcggaggttgcagtgag
ctgagattgctccattgcactccagcctaggcatcacagtgagactccgtctctaaacaaataaataaatacaaacaactccctttcaagattagctctc
tgcatttctggtcatcagttattcctactctaataggtgttctggttatctcttggtgtata Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr17 13645286 13645574 1000442 0 - 79694; RIP_Alu_chr17_013_02 CTGCTCTCAACCATTTTTATCCTCTAC CATGAACTTGAGTGTTGATTCAGGC SINE Alu Y agagctgacttgaacccaaattttctggtgtacattatgaactgaattctgattcagttcaacatgcattgaccccactgtatactaagctctagaaata
aaatatgagtaagtttcagatctttaaatgcagcctatgagaaaaaacaggtactttctataataaattgaaccatatgaccaattgctgtttttgtggg
ccaaaaatgtcgaatattggttatttcatttgatttaatcaaataatatgtaagtactatgatagcggtatattgataagttactttgttgttttcctta
tatctggaatttctgctgctctcaaccatttttatcctctactttctgaagcagttggccttgacagaggtggctaaatgtctaAAGAATACATATATGC
AAGAATACATATATGCTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTG
CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATACATA
TATGCacgctggatgactgacgaccctagcaatccacacagacttctttcttgcctgaatcaacactcaagttcatgtctaatacagcatttcttcttgg
cctgtaaatacagggaatcaatggctaatgagcaacttcatacaggatctctgaggttgtacataataagttggactaccccagacctaaggtacatggt
atttcgagacgtcaaggactgcagagttctgatggcttaaagagttaggaaaaaccactgatttgccagccaagaggtcatctgtgacctcaagatctgc
agcaatggtgtaagactgataactggcagcaaaataaaacagcagtacatgaaaaagggtggctgtgtaccaagcattgtgtcaaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr17 27460865 27461168 1000443 0 + 9918; RIP_Alu_chr17_027_01 NA NA SINE Alu Ye5 aaaatacaaaaattagctgggcatggtggtgcatgcctgtagtcccagttacttgggaagctgagatgggtggattgcttgagcccacgagattgagaat
gtagtgatccgtgatcatgccactgcataccagcagcatgggcaacagagttagatcctgtctcaaaaaaaaaaaaagttacactgcagaaattagaaaa
cacaacaataaaataaaaaacaaaacaactagccggttgttatagatatttgggtttagtaatgaatttcctgtgacagatagcatcatacgtagaatcc
aaacgtgctatcatctcaaactttgatgtaagtgaaggacctatggtaaactgaaagatacataacaatttgaaaaaatgttttatAAAATGCGAGGGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAATGCGAGGGAAaagtagtttgaaacaaataatttggtttatatgtgatttttagatagttatgtataactatgttaataatattgtatatagt
atatctattcatctgtatcttcaatgtttatatactgaagttggtaaaaactttttttacaacaaaattagtcacttttatttaaaagaaacattacaaa
taagtgtgcaaaattaaacatcatgattaaatacacataaaaggaacatgcatactttacatcaaaatccacatacagagttagttgattacatgacagt
aacagtaaaggaactgaaggaactggcaaaaccgagaactcgctgctatgcagattttatatgtttgcaatctgaaatcaaaaccataaaatagggtttc
ttta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr17 43972221 43972222 1000444 0 + 12784; RIP_Alu_chr17_043_01 NA NA SINE Alu Sq acagaccactcacaattggtcctgacccaagaggaaccctgccccaatcaggatggaataagtgagtgcggccacttggagctgccctctaatctgccac
caccactggggtctgctgccctatctgggaaccaccccctcttccccttactcctccatggccaactgggaaaactcaagctaaaaaggatgacccaaga
gatgaaagaaggaaaagaagttaattcggaacacagggatcctgaattgcaatcctttatgaatcccaaattgccaggcattcccttgaatctgaattgg
gtagggaaattgaagatgggagtcacttccttctgcaaattcattgcctctttgtgctgccgtggtatcatcagagacggtgagtttcataaatttggaa
CGGATCACTTGAGGTCAGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACCTCATCTTTACTAAAAATATAAAAATTAGCCAGGCGTGGTGGCAGGTA
CCTGAGGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACTTGAACCCAGAAGGTGGAGGTTGagaagacagccagcaacgcttttgtgtttcctgt
aaaaagagtttcaactcctctccaataatcagccaaagacaacacctggactaagacctctcacccctaggatatccaaagtacctgaatctaaacaggt
acattgagcctttggttggctcaccactactttggcaggaaggaatcaggactgatgcaggcccaggcaggaacaaagattccctgccatttgagctact
ggtttgggttgggagaattggaaggcaggggccaggtaaagtgagtcaaaaattctgaagcatggaggaaggcagaaagcaaggtggcactgtgatctag
cagtacttctcaaacttttaagtgtacataaatcacttggggagctgctaaactgcaaattctgat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr17 67363750 67364061 1000445 0 + 52865; RIP_Alu_chr17_067_01 NA NA SINE Alu Yb8 tctttaaggtcccctggctgaactttaccatggcccagcactgaaagagctttaccttctggaaacttccatgaaaataagccacttccctcattagcat
aattttctaaatatgacaaagcatctcattgaaaacaaaataaaacaaaagacaaagagtattcatctttttcaagtacaattgccgcttctgagtggct
tagtagaagtgttaaaatagcttccatttaatagtttataataacaatagagactaaaatttattcacgtcccatgtttaaggaaatggtaaatattatt
tattcattaactcaatcacctcaaaaaccaccctaaactgaggccatgagaagttggctaacttgttcatgtttaccccactgttAAGAGTCAGAATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGTCAGAATGTGaacccagataacctgaatccactacctacaatttaaaatcactctgctatatgaacattgtcactccatatgt
gcaaacatttcaaaagggaaatattcttatcacttgtaggtggggaatttggagcatgaagatattaactaactcatgcaagttcagagagctcttaaat
tagtgaagctgcaagtccatgccagatctgtcagactcaatagcctgaatacagctactaaaaccctacagaggctttgcaagagccactactgcaaggc
cttgggtgatggttagctaaaaataagtggtagtggttatcaattctagtatcatttatgttcttctcttagtcctctttaggagaatttatgagtccta
taataacattgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr17 70131814 70131815 1000446 0 + 238963; RIP_Alu_chr17_070_01 NA NA SINE Alu Yg6 atatgtaacggagcctgggtcatccactttctacttgtccaagtttcctttgtgttctcactcatctatttcctcttttgccttttaaagaatgcttcct
aattttaagccttacttagcagaagagaaagggtggcaagagacgtttctgagaatggaccaagcacaaacaggaaaatctgttggccttcatttaatgt
gaacgtaatgtttgagtcaccccctgagatttcatgactcggaatttcatgaaagtcagtcccagtttacgaaacctctccaacagagaaaactctgttc
cctgcctctttcactcttcttcctatctgggattacttcatcgatctaaggagcttcccttctctatggctgcctacttttgaatcataAAAACACCCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
CACCCTCtgtggtgatcactccccatgtctttctcaaccgttatctccatgcggatgacttcacacctcttcctctaacccaatatcccaatatctctcc
tgggctccagatcctactttctaacttcctatagggaagctccacctggttatacactgttaacctagttcagtatatgggtcatggtcaacagcataga
ttctgaagtcacacaaactcaaatctcatctccatcatttattaatcatctgaccttgggcatgttgccaaatcactctcctcctcagtctcctcatctg
taaaatagagtactcatgacaattctttctcaaagggttgccacaggaaataaatgagttaatgtaagtaaagtgcttgatacagtgcctggaaca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA promoter:CD300E:NM:181449
0 chr17 70551895 70552194 1000447 0 - 238400; RIP_Alu_chr17_070_02 NA NA SINE Alu Yb8 acaggctgtcctgagaaagaaaggaaggacaggacaggtgtttgacaactttcttgaagatcctgagaaagactgcttccgcctcccttgcattccactc
caagcttatagagatttttgactttgcagtcttttaatatctgaccctgatcttacttaaagaggactattttcctatattctgactttttttttaagtg
gctgtagtcgttttctgtatttttctcacattttcacatgtgttgaatacctcttaaaatgcaggccgggcgcggtggctcatgcctgtaattccagcac
tttgcaaggctgaggtgggtggatcacctgaggtctggagtttcagcccatcctggccaacgtggagaaaccctgtctctactAAAAATACAAAAATTAG
GGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATACAAAAATTAGctgggtgtggtggtgggtgcctgtaatcccagctactccggaggctgaggcaggagaatcgcttgagcctgggaggtggaggt
tgcagtgagccaagatgatgccactgcactccagcccgggggacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaagtgcacaacgtgtgctggt
gctgctagggtataatccgatgtgaataagaaggtgcaggtgtattaccaatctagttggaaggggatagcccttttaagtttgtaaaactctggagcaa
gttgctgtgcacaatttcatgtgacacttttagcagccctctggggcaagcaggactgataatgcccattgtacacataagtaaattttagcctagagag
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ATP5H:NM:006356:1/6
0 chr17 72499126 72499434 1000448 0 - 2265; RIP_Alu_chr17_072_01 NA NA SINE Alu Ye5 gggcctgaacccttgcttggtcatatgtgcaaaatgtcttgtgcagcaaaggtgcaacgaatgggggcgaaaacaagaagcaatgccttgagcagaagca
gctctgatggccagggcgtgaactagggctccagggccacgctgtctccacatttccaatcctcataggacctgctcctggctaagggcaagaacagact
tgggagaaggcagggagctgccccatgatgggtcccttcctggccaccccagagccgagccggagagttagaccaaccagctgtgtatagccagccctgc
ctgccttctccctgcccacctccactgacgcagggctgtggttacagaatgcaaaaagcccttgtattcctctgttctcacattgctattAAAAAACGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA
AAAAAAAAAAAAAAACGCCttgagactgggtaattcataaagaaaggaggtttaattggctcacggttctgcaggctgtacatgaagcatggcgctggcc
tctgctcggcttctggagaggcctcaggaaacaatcatggtggaaggcgaaggaggagtcgacgcctcacatagggaaagcaggagctgggccaggaagg
tgctacacacttttattattatttatttatttattttgagatagagtcttgctctgtcgcccaggctggagtgcaatggctcgatctctgctcactgcaa
cctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccaagcctggctaattttttatattttt
agtagagac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr17 73499894 73500192 1000449 0 + 238600; RIP_Alu_chr17_073_01 NA NA SINE Alu Yg6 cagtgaagaatatatgctctttagggatacagcgtggtatggatgcagcgtatgcttgaaactcagtccgacctcagttgaatgacgacagctctgtggc
tctctcacttactgtctgtgtctgtacgcagaggtcctctgagcttcatcctctgatcctctccttgaagatgcaggtgatacctgtctcaacaagatcg
atttgaggagcgaatgaagtcatctatttgaaagaccttccgagcccagtgctgagtaaatgacagctcttgctaccattagtttttccaaagactgtca
cttcacactgtctgctgccctagtatctttgcagttggaactcggtatttatggaggattgtttgattttctaagttttatcttAAGATTAAGCAAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGATTAAGCAAAACCactgggaacgttcacacttggactgtgttgccttggccccccagataattgctgactttttgcaaattccttgagttttcccgtc
atgctttttggctgtcaagaggctgcagaagatgatttaataaagcctaccctggcacacacatgctagcgcaaaaaagaagctgtctagtgcatgacta
cgtcgcctgtgtgaggtacccactaaaataacttacttttagacctgaatgctagggaaactttttcttcccttgtagaacaggtgggtgttcttatggt
tcatgagaatccgtaaaggacagagagaggaattgaatcaaatagtaaaataacgtggcaaattttaggttacctctgagtacgtgttaatccattagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr18 827119 827419 1000450 0 - 19444; RIP_Alu_chr18_000_01 NA NA SINE Alu Yb8 ccattttacaaatgagaatcagaagaacagagatcaaaggactgagaatgtgagcctaggtcatctggctgtaaaacctatgttcttggtcaccagtgcc
atgtggcctctggtgactgtgcctgaagtgccacttagaaaatagaagctctctagttctagatccctgaggaatcgccacactgacttccacaatggtt
gaactagtttacagtcccaccaacagtgtaaaagtgttccagccatcccattactgggtatatacccaaaggactataaatcatgctgttataaagacac
atgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattAAGAAAATGTGGCAC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAGAAAATGTGGCACatatacaccgtggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacgtggatgaaattggaaaccatc
attctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaataatgagatcacatggacacaggaagggga
atatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgca
ccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtacaataaaaaaaaaaaagaaaatagaagctc
t UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr18 9375405 9375715 1000451 0 + pAlu18-9375306; 7480; RIP_Alu_chr18_009_01 NA NA SINE Alu Yb8 gggggttatggtgagagtatgagtgacctttccggctaaaccccaaagaggctccagttgcagctttatggagtgtgggtgtgagaaatgaatttgaaaa
tagcgagattatttgaagatctgtctgtagaacagctgtatgatttgataaccaattccctcctccattcgtcagaaaaagttccaagtaattaagaagt
ttctctaggaaaaagaaattggagaatttctttctagagaaattgaagggaactagctgaaaagaagtagggccactgatgtgttattggtacccaggca
aggcctcctcattcaggcattgtagggagggaaggtgtctccagcctaatgactagatgcgaaagaaaaatagaataagtgtagcttAAAAGAAAGAACG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAGAACGaagtaaaaagcagaccaaggaggaaatatttaggacataaaagaaatcttttaaaaactgattgttatcttttaga
aaaagttaacaaagtatcatgtctgtattatgaaaaacaatcagaataagaaagcttttgcaaatttaaaattcaaatggggccgggcatggtggctcac
acctgtaatcccagcactttgggaggccaaggcggatggatcacctgaggtcaggagttcgagaccagcctggccaatatggcgaaaccccaactctact
aaaaatacaaaaattagctaggcgtggtggcgcatgcctgtagtcccagatactcaggagactaagacaggagaatcgcttgatcccgggaggcggaggt
tgcagtgagcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TWSG1:NM:020648:3/5
0 chr18 12841197 12841511 1000452 0 + pAlu18-12841099; 3347; Yb7AD188; RIP_Alu_chr18_012_01 TTTTGGGGAGAAATTGACAAA TGTGCATTTTCTAATTGCTGGA SINE Alu Yb8 ggcacaatcttggctcaccgcaacctctgcctcccggattcaagcaattctcctgcctcagcctcctgagtagctgagattacaggcatgcaccactatg
cctggctaatctttgtatttttagtagagacgaggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatccacccacctaggcctc
ccaaagtgctgggattacaggcgtgagccacagcgcccagccaggcattcttaaattttaagatttacttgacagcctagtcaatggtccattttttaca
aatagaccatgtcagtcctagaaaaatgtgcattttctaattgctggatatagggttctatgtatttttcttcttatattaaggttAATAATATTATATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAAAAAGAATAATATTATATAaatctatttctttacaaatatcttgtcttattaagaagcccatgaacatggatttgtcaatttctccccaa
aattctattcatttttgcttaatacatcttggggctactttattagctgcatacaaatctcagagctgatactgacatctgcattcaaagtagttatgcc
atttgctaagatcatgcagggagcgtgccgaaagcatagaagttttcccttccttcttccccctctagtaactcatttaaaaagtatgtttatttgagaa
tctttttgttttgtagagcaacaaaccatggactatgtaacctgacactaccagaatcatgagtctctgtgttaatttcctttaaaatctgactgtttca
catggatgaaccttg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 NA NA NA intron:PTPN2:NM:080423:2/9
0 chr18 24125818 24125819 1000453 0 + 2606; RIP_Alu_chr18_024_01 NA NA SINE Alu Ya5 gcaaagtcagcaacaatcaggagaaatgctctttctttaactgtaaggagtacataagcttgaaattactgggacctgtcaaatggagaaagtccgtctg
taaagtaaaacaatacaatcaaagaagagctaggagacaaaggaatagctgatcactgataaaatagttaaatcctcaatttagccatagttgttctatc
atttaatttgtaaatcaataaatgcatgttattttgtttaaaatagtgggaattcttttgttatgtaaaaattagagaactaaaatagaaaagaaacaca
aatttaaaaagaaaaataataaggacacttgcaagagaaataaaaaataaagtcatttctctttgtgtgtaggttgataaaaataacagAATCACATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAT
CACATTTTtaatcttcaaattttctgttcagctaaatatagttaagaatacaataattataactgcagccaacatacaaatctgttttttgagaaagaag
acaagacttatattaagtaattgaagagtgttctggaaatatcctcaatgttctcaaatttttaacagcaagggcctaagacatgaggaagaccatgtgc
aagattgggactgcaactcctggcagataagtctttccctgctaatattcttatgctatagtagaagtcctggaagacacaactcatttctcattttctc
tttatgtaacttttgactttttttagtctttaacatcagcattaattatgttctagtataaattattgactccaaactggggcaaggaggattaaag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr18 29787208 29787209 1000454 0 + 3640; RIP_Alu_chr18_029_01 NA NA SINE Alu Y accgggaggtggaggttgcggtgagctgaggtcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaaacaaaatgttctaac
atgacagagtttcacattatcaaagccaaaattgaggaagactactctaggagcaaaggcagatttatcataaagtcaataaaagtgaggcataggatgc
ctcaattggatgagcctcttaagtgctggagttcctggatgttgtaagcattctaggtaggaagggaaagccactttaaaatctggaagcatttatatgt
aagtgtgtctgaaaattgtctaacgagatgttagaagaaaagcgttttaatcttcaagatttcagtggtttctaaatttctttAAAAATATCCTACACAA
ACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA
GCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAGAT
CGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATATCCTACACAAcattttttctacctaa
ttttttgctcataattgtgtattacttttcttttcaaaaagatctcaagtcatataatcttcaggttttacaaaccctatttctgcctctgcctaggcat
aatgtgtgtgaagagggtaagaggaaagtagggagttgagttaggattatgcaagagtacaggtatgaggtatgaaagactagaactaaaataagaacac
ataaaattggaaactgtaagatttatttgggaaacagaataaaggaggaataagcagaattcattaagtggtaggatacaagacacaaaaatagtcaaat
ctcattctacatttttgagcaatggtaaaaatgacaatatggtgctattaacagcaggcaagtcaag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:NOL4:NM:003787:8/11
0 chr18 39707441 39707753 1000455 0 + 3902; pAlu18-41341334; RIP_Alu_chr18_039_01 NA NA SINE Alu Ya5 gcacaccagcatggcacatgtatacatatgtaactaacctgcacattatgcacatgtaccctaaaacttaaagtataataataataaaataaaataaaat
aaaagttagcattaaaaaaagcaaaaacaaaaacaacaaaaaaagaaaagttagcataaaaaaaaaacaaaaacaaacaaaaaaaagaatacctacattg
ataatatgcaagcggttattgaaacacaattgtattgatgacggtcttataaaagatcagaagaatatataaaactataattactaaaactaattggtct
ggcacatataaattaaaaaaatttttagtttagaaagcatagtaataattttgtatattataaacttacattagctaattaaattAAAAAATGATGGATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGATGGATCggccgggcacagtagctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcag
gagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctac
tcaggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagatcacgccactgcactccaaaaaaaaaaaaaaaagatgg
atcattaaaaaataaatattggtaaatattgggtcaattgttatcatttaaagttaaaaaatatctttaaagccaaatcaaaaaaacctagaaaacatta
tattatctcaatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 42592432 42592753 1000456 0 - 31575; Yb8AC1796; RIP_Alu_chr18_042_01 GCACGTTTTTATGTGCCAGA CCCCTGTGCTATCCATGAAG SINE Alu Yb8 tacctcataatttggcccagtgcaaagagaaatgcaaacccccttgttcaaaagtttgaagacagcaagagtggagcaatcagtcaaaatcaatggtggt
ggtggggacaaatgaacaagtcccactcccaagaagccagcctgcctgtgtgtgtgggagaaagaacctcatctcagaatcccaagacttgttgctaggt
gagttactttgggcatctgttgctttagtcctttcagctgtaaaatgggttagccaggggctaggaggtgaaaattcattaatatatgcaagtgaagcac
gtttttatgtgccagacagcaaacaaatacaggaattattataataatgggccctctaaatgttggagtttttctttaattggttAAAAAGCCTACCTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGCCTACCTGTgaccttgcagagaaatacagaaactcttcatggatagcacaggggccacttctgccttatgaa
ttaacacaaatcccgaattcttggtggaacccttatcatgagattttactgtgcattatttgatctttccagttcaaagaagaaactactaaatgccaag
gtcgagagtattggagtctgggcacttcccccatcaaagttcttgtgctgaggtttgagtttcggtcaggttcgctgttgaatccctggcctgactctag
aacatcccggagtgcctgctggaacctgggaaggggcaccctagaatcttccaaccggcctcagtggcgagcgccgcgggcacacgactcccagcgcttg
gagcctctgcggtgttaggatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 485 152 NA intergenic
0 chr18 43353907 43354204 1000457 0 + 14275; RIP_Alu_chr18_043_01 NA NA SINE Alu Yg6 tcccttaccagaggcaattgccatctgaatttgccctgcccttattaaattataatttttattttgagaaattataaaaattcagaaagtaccaagaatt
cctaacaaacacctgtgtacagttgtatagcattgatcattgttaacaagttgtcctgtttgtttctcattaaataaagtaatgagggcattacagataa
agctagagctgtcttttaattgctggccagctcactccactcccaggtgctcagctgtatttctgcagcaaggtattagtgtatcctcaaatgacaacta
taaggtcagccacttagctgacaccaggccccagagggtatagcagagattctcatgagcacatacctccaagaaaaagcagatatAAAAAGTAGCTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGTAGCTGCAatctagcatggcccaattactttatggaatcattgaccttagttgtggaaaggccattagaaatcagttacaatggaggccagagagg
ctgagtgactgatatgaagtcaccagccaggtatgtcagagcctggactgcacctgggtctcccatcaagcactgaattcaaggtgagctcagttgccag
ccgtgtgaatcatctgaatcatgatacgcttcacgctagactttccaggataagtgagtggaactggggattgagcttcctaggagtggaaggtaaagca
gaaagccctttcaggttgttaagaaacatttttcaaatatctgggtccacttcccttgacaggaagtccctactgcttgacatcacacgtctttcttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr18 53952591 53952901 1000458 0 - pAlu18-55586484; 14586; RIP_Alu_chr18_053_02 NA NA SINE Alu Ya4 aaaaaagaaaatgtgaaacccttgatttgaggcactaaagggtatagtccaattatagaaactctaatgtcactctaaggaaaatctaatgtccttctag
aatgttccttcgctttccattgaccttaaacctgaaaggttttacttaaatccctcctactccatcaccctttccctcactacttcacactgtactaaag
gtcttcctttgtgaatatccactgtaatcacagtcagtagctcccaggttcctccccttcattcgcctcaggttccctgaatatcaaaaaaaaaaaaaaa
aatgaaaattgcttgaagacaaaagaaaaaagattaaaagaaaaaatagaaggggaaaaaagaaaagaaattctgattttcacttAAGAAATGGAATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAATGGAATTGCtttaactgatttgggtgacaaccgacagccaaattaagaatattaggccaggtgcggtagctcatgcctgtaat
gccagcactttgggagcccgaggcggatggatcacctgaggccaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaataca
aaaaatagctgggcattgtggcacgcgcctgtagtcccagctactcaagaggctgaggcaggagaatcacttaaacccaggagatggaggttgcggtgag
ccaggatcatgcctctgcactccagcctgggccagtgaacaagactccatctcaaaaaataaaaataaaaaataaaaataaagaatattaagctcacttc
ctttcatacct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NEDD4L:NM:015277:1/30
0 chr18 55409175 55409496 1000459 0 + Yi6AH29; 19421; pAlu18-57043068; RIP_Alu_chr18_055_01 AGTTGCATCTGGAACTTGAT CTTCAAAGGATCTGAGGTGT SINE Alu Yi6 taaaacaccaaaaaagaaaagccacaggaggaatatcccagacagatattaaaacatacaaccgcatcttaagttaaaacagggttgtatcgcacatgag
taagaggacagagaccaatggattagagcagaaaattcagaattagacctgactactttggaaattttgtatatgaaacatggtaactcaaatcactggg
gcaaaaatgggttttaataagttgtattaggacaactaaatagtccattagtaaaaagataaaattagatacagacttcactccatacataagaataacc
ttcaaaggatctgaggtgtaagtgtgaaaatttaaactacaaaagtgctagaaggaaacagggactcctctgtaacctgggcatAAAAAGCTGCTAAGTA
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGGGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGCTGCTAAGTAtgatcaagttccagatgcaactgttaaaaagaataaacttggctacataaaattacttttgc
atagtgaaaaatgccataagcaaagtcaaagaacaaaagaaaaactgggagaaaatatttgcatcatgtatcacaaattaaaggctgatatccctaatat
gtattaataattacatatatcacatatacatcgtataaactcaacaactggagggactccaaaagcccaagagaaaaatggacaaaattcatgaacacac
agttcataagataaaaatgatcttaagtgtgttaagagatttccaagtctacccataagaagactggcaaaaatgaaagagctcgaaaacactctgttgc
tgaggctgtagagaaacaggca UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Reference NA 60 461 123 NA intron:CCBE1:NM:133459:2/11
0 chr18 57879650 57879740 1000460 0 + 31724; RIP_Alu_chr18_057_01 NA NA SINE Alu Y ggttctcaagagaaacactgaactcacaccagtagtttcagctgaatacactgactgtagtgtatgcttcctgagtctcaatttcagtttggtaaaatct
gctctgaagatgcatttgaaacacagagtactatgcctataaacagatatactatctaatgccctaataatacaatctttattatttaagaaactatact
tattaacctgcaactattaataacaggtgacaaatctctcaaaagtgttctgaaaatccatggcaatcaccacaacactataaacattacagatacatgc
cagactacattcacggggcagtcagctcccactcctctctcaaattctgggacagattcccgccatttcaggaataaatgcAAAAAAAAAAAGCAATAAA
GGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCATTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA
AAGCAATAAAaatagtgaggacaaaagggcaacattccattcccgtgaataaaaagcatggaatggctgaaatcgctaattatactattaacacaaagga
gtttaggaataaaattcgtcatgaaggggaaccagtgcaggagcacaattccaataaccccggcacctgtgaagggagctctgccggtcagtttataata
tcagcgacatgacaagaaacaccacagcttttcaaatgtaccttcacacaagaataattggaaactcaaaacttaaatgcaacattctcacaaacagaaa
gcagaaaaagtacaataatgaagttttgacatgtgaaccctatcgtatggtgctttagttttgaatcttgacgtacatttccccctacttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PIGN:NM:012327:29/30
0 chr18 64723475 64723476 1000461 0 + 9510; RIP_Alu_chr18_064_01 NA NA SINE Alu Yb8 atccttttactttcatattctcttatactattcactgctatgttttgctaaaatcatgaattttaaatctcagtccctactaaatatagtgtttggcaca
tcctcataactgtgtgttaaatgcataagtttaagtattgatgcttctgttattactatttgaatttaattatgtttcctgatttgttttcaactcttat
acttttattctatcagtaaggcaaatataaggttattggaagtttatattattctttaaaatctccttcatgtgtatcaaacaggtgatatgttaaccca
tatccaattaaaacaaagatgcaaaatttgacaatttaaatcacttatatttaataaaataccatagcaaaaattatgacatttacgaatgtATAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA
TAAATAAAAATAAAAATAAAAAAAAATAATTTCtattttttaatgtttgatgtaactagcatactactaataatccactatattattacaaaataatgag
ataaataattatttaccttcctatttaaaaggacataaaacactattgttacaaagattatttaaaattaaaactaaaatgcaagtttgagttaaaatca
taagattagtgtaaactcagattaatagatctgagccattcactattcttttttcttctctttttcattaaagtgaaatttcataacataaaattaacca
ttttaaagtgaacatttagtggtatttagtagattcacaatgttatgggaccgccctgtctagccctgtctatttaattccaaagcactttcatcaccct
ataaggaaacaaagcaagcgtgatg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:CCDC102B:NM:024781:6/8
0 chr18 66997721 66998038 1000462 0 + 22399; pAlu18-68631614; RIP_Alu_chr18_066_01 NA NA SINE Alu Ya5 ccctatcactctaccctacagagatttgtaaagagctaagaaagtaccaattatattatttgagtacttgctggagaggcaagtttctctggacttccca
gatatgtaagccagtaaatttaaactttttgcttatgtttatttgaattagatgtctattacttgaaagactgatacagaaattggtaccaggatatagt
atattgcaagtaataagcagaaaaatattgacttccctgaggtaaagtaaagcttcttcattcccagcaaggatgctgtcaatccttgctatgggcacta
aaggagtgaattaagctattccctactgtattttagaactcagattatgagtggactggaggatagagctttagctccagaagtAGAAAAATAGCAAGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAAATAGCAAGGTgttgtagtgtgttaactaaatcctgagtcattccttacactgcaaggaagcaaaacagcttccatt
caagcttgactctttgagagagctaagtgcacagcacacgattttcttaaaagagggtacatcttcctatgaccagcaattcatgagctttgagattcag
actacgatgcatattgtgagatcacaataattgaattctctgtcccacattgaagctaaatttagtaatttaaaggaagtgcaaagcaaaagatgagaca
ttgttaagaaagaatcccaagaaataaacatgcagcctcagacttttcccaaacccctcctattttgtattctctacctgatatggtaatgaactatcac
attttaaagcatcatgca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 70303423 70303748 1000463 0 - 13456; pAlu18-71937323; RIP_Alu_chr18_070_01 NA NA SINE Alu Yb8 ttcaagtaggcagttaagaagatgcaaacaagcatacagaattaagcccttaaagtcttgtaaatcactactttgaaggaactccaattattcccatgac
taccctccacccaaaacagcagcagcagcagcaaaacctagtctaaacattttctatgagtacttcttgctctctggttcagaacaattatataatacct
taactctaagtatgttaaagaaagttaatttaatgaattcaaaaaattggctgcaatctcctccaattcagtgaaatctttctgcactatgccacagatt
ttcacattcaaaaagctcaaaagagcttcaaaacataaggcatcgctttttccactagtacttacaggctttttacaaaggtcaatAAAAACATCATGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCATGGAatgagagtaaatctcaatgtggctgtggttagtggttagatctgtcgttctggttttttg
tcctgtgctgtcatgtctgcgccttccggacagtatgttctctgttttactgccgttatttttagccatacatatattttttttactagagatagagttt
ggctgccatgtgtctgaataggagtcttgtgatcagcttaacactgcgtttttcttttttaacgtttgtcttttagagatgcattactgttgatgtgtta
gtgtggcacatagattttcaaaatatgacattttgaaagactgttctgaaatatcactgtacgtcatgccagcacaaagcaccagccaacaccgaacttt
gacctcaaatactgaactagccacat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 71699010 71699319 1000464 0 + pAlu18-73332903; Yb8AC1776; 238778; RIP_Alu_chr18_071_01 GCACCACTCTGTGTAGGCAA GGCATACATTTTGCCCTTCT SINE Alu Yb8 tggcacaagtcagcttctgggtaaggcatgcacattttatggcaccttatatagaccagtgaaataaatacacgagatgcaaagctcaaagtgatatatt
ccagatctgacatcttaccatggctttgagcttcaggcactgacaaatattccacacgtaccaactctcccagaggaggaaatataatgatgtttatgtt
atgcaatatgtaaaatatttatacgttgacttcaacacaaactgactatcatttaaatcaggaggtgccgctcacaataaaggcaagtgacattatctgc
accactctgtgtaggcaaaggggaactcagtacagcaaatgatccatttatgtacagaataagattccaccaatgtcagtgttttAAAGAATAACAGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATAACAGTTAtgggaaaggtttttaatgtgcttgcttcttctagaattgttaaattaccaagaagggcaaaatgtatgccttcct
gactattgcccttatctttagaatgggaaagtcttttcttctgacaaaccattttttcatgaataacctcttcaatagcatttagttatcattattaata
aattgttacagtaataaattatattttaaacattttattaaatgcagttctcatgtacttaaaataaattgcaaagccggcttttttcatggtatttaat
atatatagtatgacacaatgtgcttttaatatatttaatgttatatactttaaaatctaagtgtgttgtacttttatggaacttactttatattcctttc
tatatggaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 497 172 NA intergenic
0 chr19 41738036 41738337 1000465 0 - pAlu19-41722139; 31012; RIP_Alu_chr19_041_01 NA NA SINE Alu Yb9 tagtaagggctggagtctaacagcacagtgtccctcctgtgtgcctctattccccaaagaatgttcaacactcctatgtgttcagtcctttgtcaagagc
agatataaagcaaaagttgaatccctagacttttccttgtcatattcttggatagggaaaaagcagatggatctgtttgataattgggcatactctgacc
ttctccacagacttgagtttccaggtagattgatttgatgttgaatggcctcaagtcatacaaaatgatgatgattgtagacgcagcattggagaagacc
ttctctaacctaaacgttggaatataattaaggctattatatttttaacaagaaaactactctgtagccactaaaaaacacttactAAAAACTTTATCGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAACTTTATCGCtggaagtaataattgttattatataatgtgaaataatatgtcacatagtaatgaacttggagctacaagaaatctttaatttta
ttcataccccattttcaaagttagatatttttctcctgtacaggggaatgacggtatagaaacttacctttattgatgattcatgaggcaggcacatagc
atgaaatgtgcttgtatatagtacttcttttaatttgtaaactggttattaatttccagacatggttggctaaataagagatcccataagtatgcagaaa
gatttcagtggatcaaagggagtcttgaaagatgatagtctggtttggaagcactaatttccttacttcccatgtcacagtcttcttttggcctccttgt
tt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZNF529:NM:020951:3/5
0 chr19 56468220 56468513 1000466 0 + 238246; RIP_Alu_chr19_056_03 NA NA SINE Alu Ya5 aaggggaaagttaatatctgccatgtgttgtcagatctaatttattaaaaagtagctgggagttcagacttttatgtgaggatcctgatttttaaacatt
gcaactaatgaaagaaagtctgtatgcagttttcttaatgcaggctaaataaaaccccctgcattttaactacctcacaaagccactaatttgcaaactc
tagactatcttaaatgaggaagcagttccctagtgagggaagggcctggcccagaaaaacctagaaaatgggaggcaaagaccaagcctttggactgctg
gccgtccactcacagaagaatctagaacccttcctttgaactggcttcacatccaagttgtatgggtttcctgttgctttcatAAGAATTACCACAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAT
TACCACAACTTtagcagcttttttgttgtttgttttgagaccaagtctcactgtgtcacccagactggagtgcagtggtgcaatctcggctcgctgcaac
ctctgtctcctgggttcaagctattctcattcctcagcctcccaagtaccaccacacctggataattttctaaaaatatttttagtagagacagggtttt
gccatgttgcccaggctggcctggaactcctggcctcatgtgatccacctgccttggccttccaaagtgctgggattataggcatgagccactgggccca
gcccaattttagcagcttttaaagtaacactcatgtatgatctcacagaaggtcaaaagttctggtgtggcgtggttcccctggttttctgctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 24801400 24801668 1000467 0 + Yd6JX352; 16745; RIP_Alu_chr1_024_01 ATCCAAGGGAAAGCAACACA CACACCTAGCAGCTCCCTTTAT SINE Alu Yd8 tcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccatgctgggtga
cggagcgaaactccgtctcaaaaaaaaaaaaaatcatatatatatgtattagaagtgcactgattaataaggaaagctgtttccaatatattgtcaaagt
ttacaaaactatatatacatggtaatctcaatcatacacataggttacccatacacatatccaagggaaagcaacacagcaaggtcttaacaactggtgt
gtctacatgatggcattgttagtttttgctgggagggggatgttcctaatttttgaggaatggtaaacacgcattgtttttatAAGAATATGAATATTAT
CCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCAGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAG
ATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAGAATATGAATATTATttataaagggagct
gctaggtgtggtggctctgcctgtaaccccagctagtcaggaggctgaggcaggaggatcacttgagccccagagtttgagaccagcttgggcaacatag
caagaccctgtctctggaaaaaaaaaaaagtttttaaaataaaggtagctaggccgggcgtggtggctcacacctgtaatctcagcactttgggaggctg
aggcgggcagatcacggggtcaggagtttgaacattgtgaaaccccatctctactgaaaatacaaaaaatcagctgggcatggtggcgggtgcctgtaat
cccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctga UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 452 166 NA intron:C1orf130:NM:001010980:3/4
0 chr1 27676716 27677028 1000468 0 + 19972; RIP_Alu_chr1_027_01 NA NA SINE Alu Ya5 cttctatatgagtacagattttttttaaatgtctttttaaggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgatgctggcaga
tcacgtgaggccaggagtccaacaccagcctggccaacatggcgaaatcccatctctactaaaaatacaaaaattagctgggcgtgttgacacatgccta
caatcccagctactcgataggctgaggcagaagaatcacttgaaccaggcaggtggaagttgcagtgagcagagatcatgccactgcactccagcctggg
tgacagagcaagacttcgtctcaaaaaataaaaaataatctgttgcaatgagcaagtattacttttgtaacttcaaagagatttTAAAAATAAATAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA
ATAAAAAAAAAAATAAAAATAAATAAATCtaggatattagaaatgggaggcaggccgggtgtagtggctcatgcctgtaatcctagcactttgggaggct
gaagcaggtggatcacttgaaaccaggagttcaagaccaacctgaccaacatggtgaaacccccgtctctactaaaaagagacttgggaggctgaggcag
aagaactgcttgaacccgggaggcagaggttgcagcgagccgagatcctgccactgcactctaacctgggggacagagggaagactctacctccaaaaaa
aataaaaaaggaaagaaagaaaagaagtagaaaataaatttcatgcaaatagcaaagcaaaaaaaaaaaaaaaaaggatatgatgtaagaataagcaaat
tagtagctgtggt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:WASF2:NM:006990:1/9
0 chr1 28120395 28120695 1000469 0 + pAlu1-27480751; 238884; RIP_Alu_chr1_027_02 NA NA SINE Alu Yb8 tgtaatcccagcattttgggaagctgaggctggcggatcacttggggtcaggggcttgaaaccagcctggccaacatggtgaaaccctgtctctactaaa
aatacaaaaagattagccgggcgtggtggtgggcgcctgtaatcccagctactttggaggctgaggcaggagaattgcttgaacccaggaggcagaggtt
gcagtgagctgagatttcgccaccgtactccagcctgggtgacagagagagactccatctcaaaaacacaaacaaacaaacaaacaaacaaaacccatat
aagtggacctgtgcagttcaaacctgtgttgttcaagggtcaacttattgttcaatgctaaatttattaaactctaatagctaataaaacttGAAATCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AGAAATCAAacctttgggtatttaaacattgtttacacatttaattaaatatgcttaaaattttaaagtgcaattaaagttttaggatggctgattctta
taaatacttcagatatcttaaagagcagacaaaacatacagaaacaatggtttactgggaagctggtgaggtttaagcttcagggcccctcacttgcaca
gcctcttccaagggtctacattcatacttacttttgtatcttactttgcattctttttcttaaagaaagccacccaaattatgtaagcttctggccacac
aaaatctagatcctcatgtcccatacttctttggatccttgctttatttattttgttatcctcctaaggcttctgtaccattatttatttatttattttg
a UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 36247283 36247284 1000470 0 + 52475; RIP_Alu_chr1_036_01 CTGTGGAGAGAACAGTAGCGCAG CAGTGGTTACATTAGAGTGGTAGG SINE Alu Ya5 aaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacgtaagaaaagtttgtca
gagcagcgatggtgtgaggcagcttgctctagttagtggggttgggagtttttctggctcataatgggcaagaattgttcatgtgtacttttttttcctc
agctttcctttacagttagaaaacggccaaactgtggagagaacagtagcgcagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttc
cctgtctgcaagtcgggcaggaacagaaacacacctacctgccactagaagtaatgccttcacactgctaattaataccctgttgAAAAGAATCATGAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTACAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATCATGAACgataacttacctcatacagaacatttattttggaatatgaactgtttttaagttttaatttattctaaattttctgtaatgaa
ataacacgaaacaagttcatccataatcctaccactctaatgtaaccactgttaacattttggtatactatacttctttcagtcttcatctggtgtacat
tttacttaattatacttaattactgtagagctgtcttgtttactacttttttacttaacatattgaaaataagtggtttaatgaagttgattttaaattt
ttatttacatgtaattggcactaagtaagagctaaaaaaaaaagatatatacatgtagtacaaaacttttttccatttgtaggtctgtaatattgtggca
gg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:EIF2C3:NM:177422:6/17
0 chr1 43630058 43630378 1000471 0 + 1438; RIP_Alu_chr1_043_01 CAGATAGTCTAGGACAACACCGTC CTACTATATGGGGCTACTGAGCAC SINE Alu Y tgttcttaaccatattgttcatggtataagtaataaagtagccacagaatggtaaatctccagttcactgggatttggtgtggtaagacccaacattgaa
tatggtggtaggaaactatgccttatttaaaatagtcatgttcacagaggtggtagaatagctcatgcatcagaaatatcaatcaagatcaatcagaaat
attaacacaagaaaaactatgaaacagtttagaggatgtttcattatagattaaagtgaaaggaggtggagggatgttgtggggaaatgcaacatacctt
ttaggcagatagtctaggacaacaccgtcctgtagaaatctaaagcaagccacatgtgtaatattaaattttctgatagccacatAAAAAAATGAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGTGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATGAAACAAatgaaataaaatgtaattatatatttaacccaaaactcccaaaattttcaaaatgtaataaaat
acaaaacatcgtgagatatttaacattttttttggtaccaagtctttaaaatctagtgttgtattttacactgatagcacatcccatcttggtctagcaa
cattgtaagtgctcagtagccccatatagtagtctttaccatatagagcagtacagatctaaagtaatttcaagtcaagacacacaatcctgggagtctc
agccaaaagttaagcttttttttttttttttttgagacgaagtctcgctctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctc
cgcctcccgggttcacgccat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:C1orf84:NM:001012961:1/5
0 chr1 45568297 45568298 1000472 0 + 14332;1104685509304; RIP_Alu_chr1_045_01 NA;NA NA;NA SINE Alu Yb8 taaaaatgcaaatctgactcctctctcctccacctaaaatgagtcagcagcctagggctcacaccctgactgacccagcaggccctgctgacctttccag
ctaaaccaactgctcacagctccttgagcactgcagcctgcactgggctccacctttgctcacactactcttgggactggaaagaacatcgctacggttg
attcccctcccaaacctgaagaaaaggattcatttctaggacgaagattaccagctgcttcctccaaacagcctttcctgatccgtctcccaattagaac
tgatagctcccatggatgggtgtggtggctcacgcctgtaatcccagcactttgggaggccaagatgggcagatcacttgaggtcaAGGAGTTCGAGACC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GGGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGGAGTTCGAGACCgtgaaaccctgtctctactaaaaatacaaaaattagttgggtgtggtagcaggcacctgtaatcccagctact
tgggagactgaggcaggagaatcgctttaatccagttgtgggagattgcagtgagccgagatcgggccactgcactctagcttgggtgacagtgagactg
tctcaaaaaaaaaaaaaaaaaaaaaaaagaactgatggctccacaattcatatcccacaaaactcagtacaggcatttcacacacctgtgacactggaga
gtcctcatcatttttttcctttccctctaccctgcaccccacaatggaaggtctccaggtcaagaactattcctccctccagtgaagcctggagtggaga
atgttcacccaga Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:MUTYH:NM:001048171:15/16
0 chr1 56173882 56174191 1000473 0 + pAlu1-55758902; 9984; RIP_Alu_chr1_056_01 NA NA SINE Alu Ya5 ccacccccatgattcaaattatctcccacccggtccctcccacaacacatgggaattatgggagtacaattcaagatgagatgtgggtggggacacagcc
aaaccgtatcataacactaatgcctagcacaacatatggctcattttatcaataaagactcattgaataaataaattcatgagagagaaaaaaacagcta
ggacaattccaggggctgaattgagcctggacattcatcactcaagatatctcaagggagtgcagccaggaaggaatcattgttgaaaaactgaaggtca
aagtcaataaatccagaccacatgtcttgtccaaagacagaatatcaacctaagaatgagttggcaaataaagagtttggtgagtttatAGAAATATAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAATATAGGacaaggtacaaggaatggctgaaggagagaggttgtcctgttcatttgggctgctgtaacaaaataccttagatttggt
ggcttataaacatcagaaatgtattgctcccagttctgaacactgggaactccaagatgaaggtactggcagagtcagtgtctgtggagggctcacgctc
tggttcatcattagcactttcactgtgtccttacagtggaaggggcagggcaactgtctggggactattttataagggcactaatcccattcatgagggt
gtcaccctcatgacctaatcacctcccaaagtcctgacttgataccatcgtcttggggattaggtttcaacatatgaattttgaggtaacaaacattcag
accatagcag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 63234540 63234541 1000474 0 + 11594; RIP_Alu_chr1_063_01 NA NA SINE Alu Yb9 ctgttggggtcttcacattccttcatctcattaatatatatgggagtgtgcttccgctgcttcgctccctgatgcagactgtcctcaggttggcaaggag
tgggcaggccctgcagagtcccgcctgaggcctggcgaggctcagatgcaagctcaggatccaagcaggtatcttctttgtaatttccaatgggttttct
ttgacttgagaagagacccttcgctgacctctcaccatgggtcaggcctgctgctaagcaccttcttatgctattttgctttatccttaaaacaaccctg
caatgtaggttctattggcttctctaagtcacacatgtaacaatttgctcaagcttactcagtacagctggcattctaattcagccAAAAGGGAGACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGGGAGACATGaacaaacctctcgcaatctccaacatacttgctcttttagaaaatttgaggccaccatcttctacattaaaaacaaagca
aaccaggcacaggggcttatgcctgtaaaaatcccagcactttgggaggccaaagtgggtggatcacctgaggtcaggagtttgagaccagcctggacaa
gatggtgaaaccctgtgtctaccaaaaatacaaaaattagctgggcatggtggtgcctgtctgtagtcttagctactcaggaggttgaggcaggagaatc
gcttgaatccaggaggcagaggttgcagtaagctgagatcatgccactgcgctccagcctgggtgacagagtgagactccgtttcaaaaaaaaaagataa
aaaaat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 66036512 66036830 1000475 0 - 14541; RIP_Alu_chr1_065_02 NA NA SINE Alu Yb8 taaataagaagtactaatatttttcaaatgcattaagataacttgaaaaaaaaatgttccatagagtaaacgtcacataccaagatttttgtcttagact
ctacagacagggtatgatttgacatttaattctgtaattacagtaatattaattaacttaatttaaataagctatcttgaactaaggtttaaactatgtc
tccacacctaacagatatatattacagggaaatacaatcaaactagtattttcaatgatagtaatggataatgtggttgaggatttaaactagagtgttt
ttaaaaagccgggtgcagtggcttacgcctgtaatcccagcactttgggaagccaagacaggtggatcacttgaggtcaggagttcAAGACTAGCCTGGC
ACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGACTAGCCTGGCcaacatggtgaaaccccatctctactaaaaaaaatacaaaaattagccaggtatggtgttacacacc
tgtaatcccagctacttgggaggctgaggcagaagaattgcttgaacccgagaggcagaggttggagtgagccgagatgcaccactgcactccagcctgg
gtgacagagcgaaactccatctcaaaaaataaataaataaataaataaatttttaaacatttttaaaattaaaaaataaaaataatgcaaggggcatccc
aaggaggactgagaatggtggcaagagggaaatggactgcttagtgacctctaggctggaggaacagtagagcaatagagcagtggatgtcttccaactc
tctattcaacagcagatta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PDE4B:NM:001037341:1/17
0 chr1 71513921 71514217 1000476 0 - pAlu1-71125971; 21214; RIP_Alu_chr1_071_01 NA NA SINE Alu Yb8 cctgagaacccactcactttcagaagaacagcagcatgggggtaactgcccccatgattccattacctcttaccaggtccctcctatgacacatggggat
tatgggaatgacaattcaagataagatttgggtggggacacagccaaactgtatcagctacattgaacaaaatacctttttaaaatatctaaatgttatg
atgtgatatgatattattttgtcatgtattaactcaggtttatacataaagttttcaccagatccttggtaactacagccaatgttagatacaatattta
taatttcctaaataacatcccttctatgtaattaattctataaaaataaatgcattgatccagtaagaacagaacttttattcagttAAGAACAAGGAAC
CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AACAAGGAACtctccagagagtttagaaatcagggttaaaggcctcaaagtcatattaaacaaagtataaagtaatgtaacagactttacgttaaacatg
gaacattaaatctgtacatatatgtccatattatctggaaatcctactaaatgattgtaaaagaagaaaaaattttataaaataaagataaaatgactaa
gaaaaaaagacaacagccaataagcgtgccaacaatatttcagaaggtaagatgcaacaagatggctagtaactgagtataatctgtgttttctgtggtt
tcagtgactattaaaggaaaggagtgaagttggggtacaaaaatcaaaagaagcaagctgattcataccactaacaccataaggatttaggccttta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 75784470 75784783 1000477 0 - 55223; pAlu1-75427689; RIP_Alu_chr1_075_01 NA NA SINE Alu Yb8 gatcctcttcagacatttttataacaagttagtatgagtttattttggtgcaaagtttttaaaatccatgcatggttctttttttcataatacacacttt
ccatgaaccttctgaagacccttaatataatcaccagattcctaggtaggagttagacattttcgaggactgattaaggagcattggaacaagacagagc
tagtcttcgattttagttagaagtttgtggcaagacttagaagtttcaaagttttacaaagtagaaaatggttgagtaacatagaatgtcggctgtaggt
gtccttaacatgttacattggaaatgtaaaaattaaagaaaaatgcgattaaaatttaaaaataggtttaaagataccacttttAAAAATTTTGAATTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAGGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAATTTTGAATTTGaacagtcttatgaagaataaaaatacaaactaaggagaagaactttcaaaaaaagaatgggctgggcacc
ttggctaggagttgtaaccccagcactttgggaagctgaggtgggaggatcacttgagcccaggagttcaagaccatcttgggtaacatagggagacccc
atctgggcaaaaaaaattagcttggtgtggtggcacacacccatcatcccagctacttgggaggttgagttgggacgaatcacttgagccgaggaggttg
aggtttcagtgagccatgcttgtgctgctgcaatccagcagcctgggtgacagaacaagaccctgactcaaagaaaaaaaaaaaaagaaaagaaaaaaga
atggttaattaact UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SLC44A5:NM:001130058:1/24
0 chr1 81124118 81124119 1000478 0 + 8258; RIP_Alu_chr1_081_01 NA NA SINE Alu Ya5/8 tactggtcatattatatgctagctaattctctaagatttgtcagttaaacatttgcccatatgtaaattttaacagacactaatatattcctttccaaga
tgattttaatagtctgtctccccattggctttacttacacaagtatttttcatgctactctgtgatagtactgaaaatttatcagtactgctcacttatg
cttatctgatgaattttgtgtttttctgtcatcagtcatttctgtaaacctaaaggatctattaaatactttctcgtttctcagcacacactcttagtaa
tgtttcccacagagattattaaaagaaacaaatagttactttatacatttaaaaagctataatcccatcctaactttaagagagtctaaaaGAAAATTGC
GCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAG
CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTGCttatcctcataatcaggaaagggggattagatggttaccaagtttatttaatg
aaaaaaacaaaccttaagatgaaccaaatattcttagcaaaaagtaaggaaatcattaatgtattatagttatgattttgagcatctacttcatgccaga
cttcatacacatatctttccttatccttacagcatcactgggaattaaatagttgacccattttaaacgctatggaataggctctcaagagagtaagttg
tataaagtcataaaactggacattactagagcccagtttttaaccaagttctttctgtgaaatgattcgcattttcttcccagaaatgtatacaatttac
tctgctgcactgttaacaatcacttataccacctggct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 82815243 82815552 1000479 0 - 545; RIP_Alu_chr1_082_01 NA NA SINE Alu Ya5 atcagcagatgtatagttaccatggcagcagacaagatatggatgatattaggcaaataaaagtaaacaaagataataatatttaaaagatagaattttg
ggcagaaaggtaatttgatcaacactttagttgatgggttttttcaactttaagaattatagggattatatcttaatttcaagatatttaaataattatt
attttaaattaattggattatttttaataattagtcacagactaaacaagaaggaaaattctaccagatagaaatataaagattccattttataatgtct
gtcaatatagcagaaattaaaatgtaagtaaataaataaaatagaggttaaacaattttctcataaaagttgacaaaaaaatttaaagttAAAAATATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATATAAatacaagctacataggaattaatgagagtaaaacattttgataaaagttaagcaatgtaattaaaatcaatatttaaagt
tcaattaaagatgtgaattgagagccaggacagcaacaaaagcaattgcaaggaaaaataataccaaatataaagacaaattaatgaattagaaaaataa
aacatgacccagtaaattataaagaagaaagtatagcaacaaaggtggagtttttgttttaagttatacatttgctttttgaaaatatgtgttaaatatt
tgaaattttcaataaacagagtcattttctaggaaataaatatttattcaagaaaagcaaactatactgatgaattatcatggaggagactgaaaacatc
atcaaaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 94024056 94024359 1000480 0 + 10372; RIP_Alu_chr1_093_01 NA NA SINE Alu Y aatgtgctagctataccaaacatgtctgtgaaccatatttggatgtatacaaaaagatctagctatatcacaggattgtgagaaggataaaatgagatgg
aatagaaccaacaataattaactagtgaatatgcatcattaatgcttttaagaaaaacccacagatataatacaaaataggtcagggtctggtgacaggt
tgtactttccaaagatggctgcaataacatttcccatccacatgctatttttataaggtaaccatgacactttttctatcaaatggtggaggttactttt
cctcccctgaatctgagtgggactttatgaattcctgaaacaatagtatagtggaaattatacgatgtgacttccaaagctagtaagtcatAAAAGTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCCGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGTGCCatgcatttctgccttgctccctgggaatgctcatacctgtaacccagcctcaatactatgagggagcccaaggcccctgtggagtgc
agaggaccatgttgacaggaaccaaagcacccagctcacacacttagctgggctcttagccaaaagctagctctaactggctagctatgtgagtaaacta
tctcgaaagtgggtcctccagctcccatttaagtagccccagctgagaccatggagagcagagacaaagccattcctgctcagtcttgcctaaattacag
attcataatcaaaataaatgaatgtcattgctttaagtcactaagcttaggagtgactttttacacagaaatagataaggggaacaggatcaaatgttga
attt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 95463113 95463417 1000481 0 + 7377; RIP_Alu_chr1_095_01 NA NA SINE Alu Ya5 gccattctataagatttcatgatctcagaaatcaagtcatcaaggaaatgacaaaataatgcatgtacaagccatcttgtctgctgcctggctaatgcca
aggcgagatgccattgatgttttggagcttcttgatttcagagacgttaaaatatatataaaaaatgcatctaaaaagtgatatacagtctgggcatggt
agctcacacctgtaatcccagcactttgggatgctgaggcagaaggatcatttgaggccaggagtttgagaacagcctggacaacacagcaagaccctgt
ttctacaaataataataataaaataaaaagtgatacataaagaatactagactgcccatatcactacaggtacctcactttgtcaaAAATAAATATAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
TAAATAAATAAATATAATTataaaattatttgaaatagcgagtttgtttaatgcattaaaaattatttgaataattgctggctgcagtggctcctgtctg
taatcctagcactttggaaggctgatgtgagtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaa
tacaaaaaaattaggcaggcatcgtggctcatgcctgtagtcccagctactcaggaggctaaggcaagagaatcacttgaacccaggaggtggaggttgc
agtgagctgagattgtgccactgcactccagccttggtgacagcaagacttggtctcaaaaaaaaaaaataaaaaatttgagtaactactcagtctgtgt
aaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 102820281 102820596 1000482 0 + 7148; pAlu1-102338773; RIP_Alu_chr1_102_01 NA NA SINE Alu Yc1 tcccacccttgacacctggagattatttcaattcaaggtgggattttgatggtgaaactgagccaaaccacgtctgtgagccaagatatctacattcatc
atcaaaatgggaccttcggaatttcctcagtgaggttactaaccctagccatgcatatccacgccataccacactgactagattcactaaggtctgtcat
aaggaaggcatccaaattgaatagcattttataactgaggagcactagagagaaaaggtgtgatcatagcataagatttgttctgcttcaccccagaagt
ccacaaatgggaaaaatgagggcagctttaatttgctagaaaaaagcaacacctgtattttgagtatatatcaaaccctgaggattAAAGTTCTTGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGTTCTTGTTTCagctctccatctaatggattatagtatacaaagttcagctttttcggttactgcttttaaagttttctaa
tatgattaatagctttaacaaaaaggtatctcttaagtgtgcaatatagttgctttctctcacatagacagtcttgtttggaaacaatttcttttgatgt
agttctaaagaaatatttacctttaacaggaacactagatattttttcaatgcagaagctttttttctgttataaagagagcaataatctgtagtataaa
gaattaaaatttaaaactaactactgtattgaatgaagactttgatttatacctaataaattttagaaagttttaaaagctaattttataaattatttta
gtcaatttaagggata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 102868669 102868973 1000483 0 - 53299; pAlu1-102387157; RIP_Alu_chr1_102_02 NA NA SINE Alu Ya5 acaaaggttagctttctcgtggttcaaaaaataggctttaatattttttctttttttaaaatgaatccagaaactataagaaagtcttggcaaatcatgg
aactagactcttctttttatttctaatatatcagtgtcaatatttttaatagagtctacatggcattaccctagtcattattcatttaaaaataccaaaa
caaacaaacttgctaatccaatctgtaaaatggccatgagtttaattttgcaaatgttattgagatctatttagtaagagtgggatatccatcaagagtc
ataatgatatttataaaatatgtatagctgcctagtctacttaaaaggaacatccagcacaatcagggcaataactacctttttatAAAACATTATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAACATTATTACTgttctattagtgctataaacaaagtattgtgctactccagtgaaatgaacattattcaccaattggaaccagcaaagattc
catgaaatgctaattgaaacttggattttgatgggcatatatgagggatagtagggaacttcaagaaaaaaagcgtggtgtgcaatctgccacaaaaatg
ggatgaaccctagcaattgttgctgtcagcaagatgtctaggtgatgactactactttcttctcttgctttggcctgctaactggttctgctgccttctt
gagagcacacaccttgaactgctgctggctggctatgatgctcatcagctcatgttgggcttgcactttgagcactattcccttgtgctgctttgtgctg
catat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 105229844 105230162 1000484 0 - 5866; pAlu1-104585259; RIP_Alu_chr1_105_01 NA NA SINE Alu Ya5 cagtccttaagaatcttggcatgactaacataagtgaatttgtattaactatgagaaaatatcaaggaaaaggattatagatgtccatgttagataatcg
gagctcatgtttttgtctctaatgactcattattctttacaaatattcataactaatttatctgtgaccaaaaactatatttcatcaattctaagatgca
taatttttacattttaaaatatcttaaattatagtgcatatgaaaaagcaaaggaaaatatcaacagagtaaacagaccacctacagaatgggagaaaat
attcacaaactctgcatccaacaaagatctaatatccggaatctataaggaactttaacaaatcaacaagccaaaaaaaacaaaccattAAAAATGGGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA
ACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATGGGCAaagtacattaacaaacacttatcaaaaaaagacatacatggagccaacaagcataggaaaaaatgctcaa
catcagtaatcatcagataaatgcaaatcaaagccacaatgaggtaccatcaaacaccagtcaaaatggctattattaaaatgccaaaaaaataacagaa
gctggtaaggttatggagaaaaggaaatgcttatgcattactggaggaaatgtaaattagttcagccactgtggaaagcagtttggagatttctcaaaga
atttaaagtaaaactaccattcgatccagctttgccattactgagtaaatacccaaaagcaaacaaagcattctaccaaaaacacacatgcacttgcatg
ttcattgtagcactattca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 112793519 112793520 1000485 0 + 32729; RIP_Alu_chr1_112_01 NA NA SINE Alu Ya5 ctatggaaaatataacatcagtgatcctttaatggctctacagagagattttgaaacactgaaggagaaaaatgatggcgaaaagcagccagtctgcaca
aatccactctctattcttaaggttgtgatgaagcagtgcaagaacatgcaggagcgcatgctgtcccagctggctgctgctgagagcaggcaccgaaagg
taggttcacctcagttgatgtgtaaatctttgtgaagtctttataaattatgcctgatactttcttgtcagctgccagtttttcacagtaattcaattgg
gacatctcacgggtatcaaaaagccccttagtttatgtaagagccaggagataaaaaagaaaacacagcttattgcaaatgttaagAAATAACGTGTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATAACGTGTCTGaagacagcatttcttcttgatatgtcactccaaaacactttgtatgttttttcagttcttgatcattcaaactttggggtttgg
ccaagcttgtagctgacgggagtgttctctatttgcttacttaagagataaataaaaagattaacaggtatttgaggcatgctatatccaagggagagaa
agaatttacctgaggataaacacagaagccaatagattattttcatttattcctattattcctagttttgagtttcattgcattttgttgctcatgaaac
cataaacagtcccttggtttatttaccttaaaggtgttctactctattagtgaggggtgtgtgtgtgtgtgtgtgtgtgtgttttccatatttaacaagc
cc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:CTTNBP2NL:NM:018704:4/6
0 chr1 114845054 114845355 1000486 0 + 14400; RIP_Alu_chr1_114_02 NA NA SINE Alu Ya5 agtttttaaaatgaactttcacaagataatacattttagtataagagtgagcaaaaggtgaatggccaaggtttgtcttggaaaaagaaattttttaatt
aaaaaaaaaaaaaggagcaaaaggtcaagatcagtcgagataatcttgaagatgaccaaggtatacgtagagagggcagtgaaattaccttaatgaacaa
aacttactgcttattattataaagctactaagaacagcaaaaaaaaaaggaggaaaaactattttaatataaaaacatgaaaagacagctctctaaaaag
tgtatcagttatctattgctatgtaacaaattacctcaaaaattaatgacttaaaacaacaataattatttctcacagctttcttgaaacAAGAATTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAATTTGGgagggacttggcaggcagttctggcttagtgcctctaagaaggctgcagtcaagatgtcagccaggaaggactgcagtcatctgaaag
cttgattaggatagagaatctacctcaaaagcggctctttcacatagctggcaagttggtgctgggtctttgcagaagacctcaatttttctccatatgg
cctctttaaaggactactagagtatctttcacagaatgacagctgtttttcacccagaacaagggattcaaagagcaaggaaaaaactgtatatatggct
ttaatgactttttaataaagtcactattaattctattatattctcttggtcacggagaccagccttgagcaactggacagcaaccatacaacggtgtgaa
ta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:TRIM33:NM:015906:1/20
0 chr1 204599779 204600096 1000487 0 - 17726; RIP_Alu_chr1_141_01 NA NA SINE Alu Ya5 atagaagctcccttaattggtcttcccttgctgcttccaccctactcctcctaaagcactctcttcacacagaagctggaataatcccatttaaacagaa
gtcagactgtatcatgcctctccagtcctccagtagcctccaaggcccttcctgaagaaacctgctcgctgccccagaccacatctcccaccactcttcc
tcttgcctactctgtacaaggtctccttactgtttctcaaaccagataagcgcattcccatctcatggccttagatgtgcactattatctctgcctgaaa
taccttcctcaaagagctaaacagcaaaatccctcatttcctccaagaatcagttccaatgccaatttatcagtgaagccgtctctAAAAGAGCAATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGCAATATCcttgtaccccatcctctttgccctgtttcattttatcatcatctgatatattatatatttacttttttatgtattatctgtt
tcaactattagaatataagctccatgaaggcaagaactttttgttatctgctatattccagtgcctagcacagtgcctggaacatgggaggcacactgta
aatatctgctgaatgactaagtgaactgctgaatgactaagttgaatgacctcctcccacctcatgtcaggccactcagtcctgtctataatgtctttcc
tctgccttctggtaaatctaattcttttagttcccattgtcattatccaagtttctattatccctctgaattattgtagcaggctcctatatagtttctt
ccat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SRGAP2:NM:001042758:1/18
0 chr1 145124845 145124846 1000488 0 + 11425; RIP_Alu_chr1_143_01 NA NA SINE Alu Ya5 tgactgtgagcctagaaagttgaaagtaatttctttattgagaaaataaagacatggttcctaaggaaaagggctaaaaatgaccatgtttcaagtacac
tagtgaatagcaagtgaaacaaaatgtcttaagcatctatatgtcttatcttagatacatacaactattgtaggaacattatttctcttatctctcagga
aacatatttagttataatatgaaaaaaaactaaaattgagcttctaatagaaaatcaaaccctatcagaagaagagttacgtggagtaagcgattttata
ccgatgctgacttactctccctaccataaaatttgataaacaacaaacatttattaagcacctaccacatgtcaagaactctgctaAAAGACATACAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAAA
AAAAAGACATACAAAGcctgagctcccagtctagggattaccacaaggaagagtgacggatcatgagtggaagggagatgagttaatacaaatggaaaac
aggtttcattgtaggaaaaaggaaagtgaattaatgctttcgaaagagacattaaagtagatttctgggcaatatgaaactgagagtcaatctcgtcaga
ttctgaaggcatctgtagataagcttcccaatgaaaaacagggcagtgacaataggacaactagaagtaagctataattatagcaaagaaggcaagagct
agcataaacttgcctattgtcattgttgaagtcatagaactactcctttcaactactcttgtcatcagaggcttcctgatgcgatcatctgtggtgagga
ta Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA exon:3UTR:FMO5:NM_001461
0 chr1 181218647 181218931 1000489 0 - 238935; Yg6AH108; RIP_Alu_chr1_179_01 GCGAAGCATGTGCCACACCATG GTTAGGGCTTTAAGAGTGTATGAG SINE Alu Yg6 aatggcaaattttgttatgtatattttacaacttttttttttaggaaagtgaacaatgcacgttggaatctatagtgcaactgctagaagaatagtaaaa
gaatatataacaagcaagctattcgaggtgaaaaatcaaatagaaaatgattcctttttacctgtctatgtacaatgcaataaaaagttattaataaaaa
tgtattcaggtgaaaaatatactgaaaatgttcactaaaataatagtaaaaattgtgtgttagggcattaagagtgtatgagatttgttggcctcagttg
tctaaattctctatactatggctattggctcataatatactgctttgtcataaaaccacctctatcatgtaaaaaatcttgcttAAAAAAGTGATTTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGTGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGCT
TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGATTTAC
Tgtttcaagtggatatcagatctgagctgtttgtgagacaattattaaaagaaccactaatagaagtcacagtttctatcaacttagaaatctttcaaaa
cagaatatctctggttttcctaaccatggtgtggcacatgcttcgctatagcaagttgtacttaggcattttagataaaaagtaggtaactcatctggat
aatttactcataatatgttcactttcagcaaaagcttaaccaatatctgatcagtacttggatgaaaattaagtccatgcatcaacacattagctacaaa
aggacaagttcttgttgtgtctaatataaattctctgttagttttcagttgcagcacacaaaaaaagttcagtttgttctagaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr1 195045816 195045817 1000490 0 + 2978; RIP_Alu_chr1_193_02 NA NA SINE Alu Ya1 aaccctcgggggtccagttctacactgttctttccctctttgcaataaatcttgctgctgctcactctttggttccacactgcatttatgagctgtaaca
ctcactgcagaggtctgcagcttcactcttgaggccagccagtgagaccacgaacccactaagaggaacgaacaactccagatgggaggaacgaacaact
ccagatgggaggaacgaacaacaccagacatcccaccttaagagctgtgacactcactgaaggtctgcagcttcactcctgaagccagtgagaccacgaa
cccaccagaaggaagaagctccaaacgtgtgaacatcagaaggaacaaactccagatgcatcacctttaagaactgtaacactcaccgAAGAATGAAGCC
ACGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAA
AAAAAAAAAAAAAAAGAATGAAGCCaagtcagtgagaccaagaacccactaattccagacacactaccattactaaaacaaaatgccatggatctgggaa
gcagcaggcttgagcaacatcattactggagtgatgtatagcatatgcttcagtgaaacaaaggaaattcaggtttctcacacacacacatgctgatgtg
gtttgtatctgtagaaaaaatgcatcctgtatgacccagtggtggtaggacaaagaagtctgcgtgtgagttctatggatggatccctcaacgaacaacc
ctctcctactgctgctgtgccctttgcctgtgatacagcctttttgtgagcataagttgtttgagtcctgtgaattccttcagcaatccaacaccaacat
tcttaccacctgg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 215820714 215821000 1000491 0 + 18079; RIP_Alu_chr1_214_01 NA NA SINE Alu Yb9 tgaaacattagtaattatgatgctgatctctagtaagctaacctttcaacttacaaatcaataaaagctaataggtaaacaattttacttctagaaaaac
aaatctgtatcaaacaagaagtgcttatatttactaaagtatatatgattatggtgaaaattttccccgttatctcaaaatggcagcaaagagaactgct
cacctcctactataatttttctttataattagtgtacagcattaccttcggtaatctcaatcctttcacttttatcatcctcctcctttaaaatctttcc
tttccccaactatcttctcaagctttgctacttactaagagtgggtcccaggccagcatcatcagcatcttctgggagcccattAGAAAGGCAGAATCTC
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA
ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTTGAACCCGGGAAGCGGAGCTTG
CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAGGCAGAAT
CTCaagttcctcccacgacttattaaatcagaattgacattttaacaagatccactcccaccagccccaagatccgctgggagattaaatttaagcatct
ccgctctacacttggtggaaaggatttctagcctcacggtctgtgtctcttgttcttaccctttatatgttttcattggtcctcaggttaataaggttag
taagcatcttaaaaactattgatttcaaaacttccattttacagataaactagaaataaactttaatgcctagcacaagaccttacaagaaaaggccctt
aataaaagacaagttggaagacaaaggcaagatgacagagaagttgaagctaaaagaggttaaggatttagacggtttctatagcta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:GPATCH2:NM:018040:5/10
0 chr1 217989947 217990249 1000492 0 - 865; RIP_Alu_chr1_216_01 NA NA SINE Alu Yb3a1 tggcaaatcaaggaaacatgtccattcacctcttttcatctggtgatttgcttcttcaagctaaaaatctcaagttgcagttctggcattagtttcttta
ggaaaactgagattgctttacaaggtctcacatcttcagttgaaagtcagatcagtttccatatccagaaaagtagcttcctctaatctgctgttttgct
ttctgcagtttcagttacctgcagtcaatggtggtcagaaaatggaaaattccagaaataaacaattcatgtgtttaaaattatgtgccgtttgagtagc
atgatgaaatgtagtgccatcctactctgccttccccagggaatcttccctttgtacagcatcaccatgctctaagatccaagttAAGAATGAGTCCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCAGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAATGAGTCCATAaaattgtgaagaagggaaaagaaattctttccggttttgctgtcacacctcagactgcaagttacaaccacggtgtgtgatg
agagttaagatgaagaaggcattaaatttgtgtgtggaagacacaaatagaaatgcattctggttgatagcaatcagatttggtactatccatggtttca
gacatccactgggagtgttggaacatatcctcctggagaagggagcaactgctgttcttaaccgggtgaatctcacacccagagcttgctatttgcatat
agttctctatcactgatgcatttattaacaagatataccatcaagagggtttttgattaattgtttggcagtctcagtgtgtcctggctcacaagagcta
atc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 222459458 222459757 1000493 0 - 8542; RIP_Alu_chr1_220_01 NA NA SINE Alu Ya1 tggctctgtgagctctggtctagtgtctacgcagaggacaccaagcaggccctgggacacagcaatcctgagtgtgtttggagcagaaagcagcccatgg
tggctggaccacagggagagatggcctgggagagtcaggcaggagcctaatcatatggtttacagccctgcgtgtgtgtgttggggttgggggggggggg
ctgggtgtgtgtatgtgagcaacgtgtgagtcatgtgggatgggaggcccccttgcactttccttctcagccccttgccacctgacatccacactcacac
atcctcacaggcagttccgttttgaaaacctgatttcatgtggccagtccagtcttaggacaaatatatattcatagaaggcaatttAAAAAGCCAAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGCCAAGTCatctcaacccgagctacactagatgcacggctgtgtcagttaccagagtccagctcggtgttggctaatagtggaagcacaacttcc
attgccaaagctcagagacagaaactccggagatggagcaggcagataagtgtgtggctggcgcagagccaggccctcggagatgacgagcatgtctctc
accagccccttctgcagtgagtggctgtcccacgggtctctccagctgccaggggagaatgaattagggtgttgagaattacccaaacccaaggctgggg
agggtgtgactccatctaggccagtccttgtctttgctaatccagcatgacccaggcctgctgtggaatattttggaatatattggaatatttggaatat
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 226090730 226091023 1000494 0 + 33258; RIP_Alu_chr1_224_01 NA NA SINE Alu Ya5 ggcaggacgatagcttaaggccaggagtttgagaaaagcctgggcaacatagcaagactttggttataaaagagagattttgtttgtttgttttttactt
ttttttttttcgagacaaggtcttgctctgttgcccagactggagtgcagtaatatgaacacagcttattgcagcctcaacctcctaggctccagcgatc
cttcttcctcagcctcctgagtagctgggaccacaggcatgcaccatcatatccaggtaattttctttattttttgtagagatgggggtctcattttact
gcccaggctggcctcaagggatcctcccgcttctcaaagtgctgggattacaggtgtgagccaccacaccaagccaaaaaagtttttAATAAAAGCTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAAA
AGCTTCCcttccataacagaattttcattggaaactctcatctttcatgtgagaatgcctttattttatactctacatttttatttgagacattgtttac
aaactctaaaatccacaaatattgtgtacagctgaattatgttaacatattcttttttcattttttaaaatgttatttcttgtaacattggagttacaat
gaatttttaaagcaaattccagatactatatttcatccataaatatttcagtgtagacaaacattttatttatatatttatttaatcttattttattctt
ttagtggcagggtcttgctctgtcacccaggctggagtgcagcggcacagtcatagttcactgccgcctctaactcttgggctcaaatgatcct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:MPN2:NM:183062:3/5
0 chr1 229151786 229151787 1000495 0 + 16963; RIP_Alu_chr1_227_02 NA NA SINE Alu Yb8 ctgttcactgtatggatgtcagccattcattccacaattatttactcagggcctactgttagctatctcaggttccatgtgctaggaataccatgcaaag
tcatgctattcttgccacatactaggaatagcaagcaaaaaccaacacagaagacaaagatttgcctatcagatcaaagtcagctctgctaagcctattc
ttcccaaagggaagcaagcaggacaacatggctaataatagtggggtgcaggtcaatggaaaacaagagcccgatccagggtaacaggaaggcaaagctc
tatgacagatgtgccacagtgaatgacgtatggtggccctccagctcttgcagctggaacatttttatagtaataaaaattttaaattAAAAAAAAAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCNNAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAaatttgcaacagctgaaatatccgaacactgacaacttcctaaaggtagccatcatcatcttgactgcaggattggatg
tgtgccccacacagaggccctcgcacgggcctcccctcaagtcaccccatggtctcatcattactacagcactgaattgattactgtgcttatctgtaaa
gtatttaggttttctctattcaatttattctttccttttttttttattttttatttttgagacgaagtctcgctgtcgcccaggctggactgcagtggcg
cgatcttggctcactgcaagttccacctccagggttcacgccattctcccgcctcagcctcctgagtagctgggactacaggcgccagccaccatgccca
gctaatttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:TTC13:NM:024525:4/23
0 chr1 230489757 230490069 1000496 0 - 10270; RIP_Alu_chr1_228_01 NA NA SINE Alu Yb8 ttaagtaaacacctaaatgtcatcccaaggagaattgctcaagaatttttattagtttggatgaattcttccttccttcctttctctctcttgttttaac
ttcttcaaaatttaatacacattctctgtcctggtttagtctttccactttccactgggcaataacagaaaacagcttgcattgtacactttgtttaaaa
aattgtttccaatgaagcaccaggagggaacattaggagtctgaggtccaatgactgcagttggcttatcaggccagttgcacaagtcagctccagtctc
tggacctcggtttcctgatctgcaaatggaatcagagttatagtctcccagcttcaccctcagagaaagcataaaacatgggtttAAAAAATTACCCTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTACCCTTCatcgagtgtttggaggttaggactgcagaaatgcatcaactgacatcatcttctttgagaactttaggagat
ttaatgatatctaattcaaccttactaaatgcttgcaaggtacatgaacaatagtgttacacagtgagagatcaccagcttgatttatttatatataaaa
tatattattgtaattataatacattaatattaacatattatgaatatattatatactaatgtattactaattatatactaatgtatgatgtaatatataa
caatatattaatataacagacattaatctacatagcattatatactatatattaaaattatatataaaaatataaatatataatacataatatatataca
ttaatatagtgta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr1 232653835 232654135 1000497 0 + pAlu1-230962376; 239259; RIP_Alu_chr1_230_01 NA NA SINE Alu Ya5 taccctcctcacaagtttattttctatcatacgtgcatattaaaatactgcatattaatttaaaagagaaacactgtccgaggccttctccattacatct
cttagaaggtttgcaaataaaagtcacataatttcacaactcatctttggtcacgtataatggtgaaacttttgttttaaaatctaaatatgttctcaat
ttcctttttataatatctgtcttaataagcaaattcaataactgagtttaaatatgaagaaaataattatgaaatgagtctttctaaaaagtaagcattt
ttgaaaaattattttttgtgtccattagggttacccaaagtttactataaggaggcaaaggaagaatacatcacctgaccaaagataaaacTGATGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
ATGATGAATGactggatcatcgaagtggtcaggactaaaagacaccacacaggtacaatgagtgagcaagtcaatgacgctaaaggaggttgttctgtgt
aggtctttatcaagtcggataatcttaagatattattgtctaacagtgaggtcagccggtatttatcttttaacagtatacacttttctttgcattcctc
taaaactggccagactgcgttgcctaattattgctacaaaatacgtgaggcttttcgaatcttgtatttccacaggcatgattctgctgtatcaaaatta
tttttgacaactaaactctaattcatatttgatttttttctttccctctatcaaatctgtcacaaaattcagaatattttcccttcaaagacttttcatg
t UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TARBP1:NM:005646:9/30
0 chr1 234121215 234121536 1000498 0 - Yb8NBC485; 238508; RIP_Alu_chr1_232_01 TGTTCTTGCCAGAAAGTTTGC CCAATCCAGGACTCGACATT SINE Alu Yb8 tttgaatgataaacaccacattctggataaggatgatctctaggaagaggccatgggagaaacatatcaatgaagtctcatatccataatgttgtcattt
taaatgcaagtcttattttgggataatttatggaaaaattgcaaatgtagtccaaagagttcccatataccccttcgtcccattccccccagtgttgaca
tcttacataaccatggtacagaaatgaacataactcagaaattaacactggtacaactaaacgttagattttattcagatttcaccagttttttcacaaa
cgccctttttccatttcaggatccaatccaggactcgacattacacttagcacacctatattgttttatatgtttgaaaagtttGAAAAAATGTTGGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAAAAAAAAAGAAAAAGAAAAAATGTTGGCAAactttctggcaagaacagaaacttcattatattgctttctggccattattggagggaacata
gtgcttatgagggaggctctggagataagacaagcaatccagcttcaaattctggctcaagcactctctagctgtgtgcttaatctctctgagcctaaat
ttcctcaactcaaaaatagggatgataacagtatgtaccacttaggcttactctgagatttacatggattaagtcacacaaggcaactagaaattgtgat
caagaaatgttagctattattattaattgcatatgtaattcacaacacaatttttctaaaaatagctcctttgagagtctctggagtccatcttaataag
aaatcacaaccttcattgtaaa UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 58 433 95 NA intergenic
0 chr1 234661563 234661873 1000499 0 + 52547; RIP_Alu_chr1_232_02 NA NA SINE Alu Yb8 ttgagcttcctttttcgagtgatgccgaggaaaaacatcatagtgtcctagtgtcaaaaattaaagtctaagccaggcatgcttgtggtcccagctactc
aggaggctgaggtgggaggatcgcttgagaactggagtttgaggctagtctggcaacatagcaagacctgtctcttaaacaaaacaaaacattaaggtct
gacatttcaagtgcaatttcagaaagaaccctttacttttagttatttaaaatcaataccccatctactagaactattcaacttctacaacttattacaa
ctggtatttattgaggatatactctaagaccaatctgaactgggtattcttggacataaaaaatacaggaggaggaggtggaagttAAGACCCCAGGCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGACCCCAGGCAGaccttatagacttgttggagaggcagtgcacacagtttgattctcggatgtgtgtaaggctcagatgtgtaaaca
atttccatgatactttaaggaaaacatttcctaggacctttatcaatcaataaagttttaattactttaacgacatgcataagcatatggcaaatgaaga
taaagcaaaaatttgttccagctgggtacggaggctcacacctgtaatcccagcactttgggaggccaaggtcagcaaaacctgaactctacaaaaaata
caaaaattaaccacacctgtggtcccatggtcccagctgctcaggaggctgaggtgagaggatcgcttaaacctgggaagcagaggttgcagggaatgga
aatcgtgccac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:EDARADD:NM:145861:4/6
0 chr1 239216497 239216804 1000500 0 - pAlu1-237446358; 15544; RIP_Alu_chr1_237_02 NA NA SINE Alu Ye5 gctgaaaattatgaaaatacttgagttttgtaaaggatgcaaatcaaatgtgttctattttgcttgcttacagagtcctcatatcttatatttacaaata
ttttgcaatttttttcatgaatgcttaatatttttgtgcacctctaattcagatttagtttgtggatagctgtaggtgacacttgtagctgaggatgtgc
tctaatcctggggaggggtgcagacgtggaccgtaatggaagtaatacaggcttaggacagagcctggtccaggcctttgcactctgcagggggcacagg
taaggaagctcgtttgccgttcagatccgtggcatgggtgaaaaaataatgttgaagtttaagatcaatttaacatcatgtttAATAATAGTGGTGTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATAATAGTGGTGTTTAaattacatgccagtagaatattctttgcatgaaggatactattctttttaaactctgtgaaaatagaatttgggg
aggggagtcttgctatttattcattcaatcttttgttgaggggtgggcacaacaggcttcctggagtagataatgtttgaattgaactttatggcctcag
ttgggattcaccacaggaaaaagagatgaagatagaagagcattagcaaaatcatggaaggaagaaacagtatagcaggtagaaaactatgagcagtgtg
atgaggaagaattctgcttgtttgtttttgcttgttttcattttaaataatatactgctaggattcgacagtaataaaacctctactgcttctgctgagc
agacggag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RGS7:NM:002924:3/18
0 chr20 2462992 2463089 1000501 0 + 19981; RIP_Alu_chr20_002_01 NA NA SINE Alu Y? gttcagtatctgacttccaaacttggatttttgaattccttagaaataattgtggaaagcagggtttgttgtgagagagaagaaatctgccaattcctag
atcactccttcagacaccaagggctaaacccagccaccagacagcaaaaacacatcagcccctgaggacaagggtctctgtttcatttgctgatgaatcc
ccagagccgagaactgactctgaccccagtgggtgctcatttttatctgtgaggagaaaagtggagttatcgactgtgtggacagtcaggtacaagggaa
tttgatagtcctatctggagggaatttctctccggagatgaaggtgttgtagaaagcctttctcctctggcaacagagaacaacAAGAGCAGGGTAAAGG
CAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
GAGCAGGGTAAAGGgctgctgggggtcctcactcatcaggggagagcgcttggggcacccccagcagaaaccttactcaccagtcctctgggccacgctg
tcctgtggctgcacagctgcccgtgctgcttctcacatggaccggggtcctgcactggcatggccctggtggggagagggatttgcggctgcagtcctgc
agtatggatgccagagaatgcaactgagatcctcccactgccctcatgccccggggactggggcggccctgcaggaaccagttgggtcggagatcaaggt
gtgggacaaagagaaaagcttcaaagcttgagatgaaccgttgcacgtgcattttagaggtagctcctttgccccttccctcgccaagcttgcatgag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr20 11465279 11465588 1000502 0 + 79712; RIP_Alu_chr20_011_01 CATCCCTATATTACCCACTCCAGAGC CACTCACTATCTATCGTCATCCAGC SINE Alu Sx agagctgtgatcataaaagctaactaaatactgccatgaaacagctaggatttggatgcagaaacagagtgccagagaaacactaaacaaaatgacaaac
cacagttaggatctcaggaattgagaagatggacctgtctggcagctgaaaacattgatgtccatcattaatgcagagtcaggacttcccagagacgaaa
ttcttctgcaggaaaaagggtgcaaccatcagcctctgcccttcctccatgtgagatctctttctcagtctccagggaagcaatgtccttttgcttccta
ctaaatacctggacctctccatccctatattacccactccagagcaatttgcacagtgctccacactttcccctaattccttctcttCAAATTCTGTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACAT
AGTGAAACCCCGTCTCTACTAAAATACAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAATCTCAGCTACTTGGGAGCCTGAGGCAGGAGAATCGCTT
GAACCCAGGAGGCGGAGGTTGCAGTGACCCAAGATCGCGCCATTGCACTCCAGCCTGGCAACAGAGCGAGACTGCCTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACAAATTCTGTCTTacgtgcaaacttccaggatttagctgtccgctggatgacgatagatagtgagtggattaataaaagctatactccta
gcaaaatgttttgttagatctcagtagcaatgcctcaactgtacaaatgtgcagactttcataattgcccttaagtattcactaatcctggaaatttcaa
gcaaagtagctatctctctgtgtggagaaaagatgttaagttatttgaggttttcagcatgctgaagtttacattataaaaggaattgctaattccacct
acacccttgaaggagggccatccattaacaagagaaagcaataccttagggcaaagtttctgcctatctgcaagggaatataccaattactaagacaact
ttatccccta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr20 22603338 22603650 1000503 0 + 15678; RIP_Alu_chr20_022_01 NA NA SINE Alu Yb3a2 actggtttctttatgctgtcaccatcatatcatttcatccagtaaatgttttgctgtgtaccactaaaatataagaagtcatcttaaaaaatataatcat
atcgactggataaagaaaatgtggtacaaatacaccatggaataccatgcagccataaaaaaagaacaaaatcatgtcctctgcagcaatttggatgcag
ctggaggcccttatcctaagtaaattaaggcaggaacagaaagccagtagttctcatttctaagtggaaactaaacattgggtactcatggacataaaga
agcaacaatagacactgggcactgctagaggtgaggggtaggcagggggtcaaaattgaaaaagcaactattagataccacgctcAATATCCAGGAAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATATCCAGGAAATGggattatttgtaccccaacctcagcatcacgcaatatacccaggtaacaaatctgcacatgtaccccctgaa
tgtaaaataaaagttgaaaaaaatacaatcttaatactattactgtatgtaaaataatgagcaacaatttcctcagtatcatcaaatatccagtttatgt
ttatatttccaattgtctcataaatatcataatctttttttagcggtttctttaaattaggagctaaattacctattgcagtgagttgttttcaatctcc
tttaactggcaggtgtcctccccaactctctccctttctttctctttgcctcacactccactgccctgacctccttttctccctatctccccgtctccat
tctttgcaactca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr20 37771062 37771183 1000504 0 + pAlu20-38975973; 15950; RIP_Alu_chr20_037_01 NA NA SINE Alu Ya5/8 aaatttttataccattcagcagtagaggagaaaaatatctcttaagaatgaggtgtaagaggtagacagcgctgtattgaggtggtactgccactctgac
agcaactgagtatatgaagtttggcaaaattcccatcccaattggggagctaccaagtcatcacacatgcatttctgttggaatcattttatttctaccc
taaatgataatagaacatatggatttggggatagcagagatgaaagccatttcttccttgtaagtttccactgagggattgtactcgccaaagaagtaca
aatgcattttagatctacaatcatttatcaattatcaaacacctatcaaaatcatagggttggctctatattatgttggaagaatAAAAATATGACTCGA
GAACCCGGGAAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATATGACTCGAacaggcccttgaccttggtggactttaagtgagggagaaataaattatcccagatatttgcaa
tgctagaaagagatgcaaagctaagatgggtaaagaagaagtagtaattaacaccttgaagactatttagcagttctccaagaatataagtagaaaacat
acacgagagctctagggatacagaaagggcatgaagttagtgttaaacaggcctaatcctggtttctggagtctgccctttggcagagacttctgtgttc
cactgaattgtctgttttccttttcttccttaagaaaaaaaaaatctcaattttatttagaataacactgaccactagaagtcaacattttccaaattcc
tttgcattttggtgtggtcatg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 52726073 52726372 1000505 0 - pAlu20-53930983; 55626; RIP_Alu_chr20_052_01 CAGATTGGTTGCTGGCACTGAAC GCTGAGATCCATAGACATGTACATG SINE Alu Ya5 ggcagagttttatagtgaagattagaatatttgatataccaggcactgaagggaggttttctgtgctgagatccatagacatgtacatgattagcctcag
aggggtctgtgatcttgtagatcatcttacgatttaatgtgcacagctgaatttttccaaagagtgtgttcgagaaatatttgccaacaattcctcagtt
gtggagaagtgggaaatgccttcatgaaggttcaagtctaatgaggacaatggaaagtgaagagacaaaaaaaaattgggttcactagacaaagggggcc
atggcaagggactcccactcaatcttgagattcaaggaattaacttttgagacaaaacacaaggaatggttgggacttaaccaggtGAAATTAGGAATCA
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAATTAGGAATCAaaaaggttaatatctagtgacctagaagactctatctaagaacagcagaagaggatgcaagatatggtgtatgcccataacagccc
acctctgcagccaggacccaaactctcaagggccaactctctttgctctgagaggtcagaacaatcattttcccataagtcagagcttgacaacagtcaa
gataccaaataggcctacaagagcagcgtccacaaaaatgcatcactagtgttcagtgccagcaaccaatctgtccttgtgcaagttattgaggacatga
aaatatcacagggagacccgagctccaagcgcttgaagcagtcacattattatgcactgttcaaagccttgcagaaacaaaactgagaccattctttgcc
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 53896642 53896944 1000506 0 - 31590; RIP_Alu_chr20_053_01 GTCACTTCTGTCTTGGGGCTTATGG GACTAGGAGGTCATGGGCTCTCATG SINE Alu Y ttgggtggaactctgccacgtggccacatctaactgcaagggaagctgggaaatgtagtctggccatgtgcctacagactaggaggtcatgggctctcat
gggcacatggcagtctaagtaatctatggtcactcttctctctgtgcgctaattgtccttaaaggctccatgtgtattttttcacagggccattgctatg
aacctatagacagaacccactgccctgatctggtcaactgttacttttctttggctatcagttcatgtgtcactcccccagggaacacttccctgatcgt
tcccccagacatacctcaccaactagactcttccttgttatatgctataataaaacctcatttcctccataccatctatcttcattAAAAAGAATGCCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAATGCCCAcatttatgtgatagttttattattgtctccttaaccattagaccataagccccaagacagaagtgactgttttgctcatattg
tattcctaagaatctaggcaatttctatagccacttaataaatatttgttatatagatatatgtgtatatatatatatctctgtgtgtgtgtgtatatac
atgtatgtacacatatatatatatgtatattagaatcccatcagtagtttcaagcaatgatatataaattacactcttattctgggactgctttacaaac
tgtcactgagtttctctggagacaattgagaagtggagttgaaaatattcctttcaacacataaacagatttctttttgtagatctctctcattatgttt
ctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr20 57219307 57219515 1000507 0 + Yb7AD42; Yb8NBC479; 2907; RIP_Alu_chr20_057_01 CATCCTGTTTCAACATCAGCA GTTCCCAGCAGGAATCTGAG SINE Alu Yb8 gccctgagcatgaggctgtgtcagctgcagcagggacacctgctcctctctccccctccacaggggacacagttcccaacgtgttccatggaagttggca
cccctgcctcatctgcagcttatcctgcatgctcatggtgaccctgggggcctcagtgagcagagagcccagaatgaaaagccctttcaccccttcttcc
cttcagcctcagggaagggtcctgcacgctcaccccatggactaatggaggagtcccagagatcctgagctccctccatgtgggggaaatcccacttcca
taaacatcctgtttcaacatcagcatttcattgctttcttcacacctaaatcccaagagcaaactgggggcaccaatgaatggtgaataaaacCAAATCC
CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC
CGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAA
AAAAAAAAACAAATCCaaggagaaaaaaaaattcagaaacaaaacctgaatatagatctaagaaacaagtggctttccatagctcagattcctgctggga
acacagctccaccaccccatccccttacataggtaataaggccccagcaacagcctggaatggtgacaaatatctatgctttcatgtttgttatttgagc
atccagttgaaccaggggcctaggtccctggctcccattttcaaaggccctcctctccagcaattaggaaggacatggagaatgtccactgcagggcagc
tgtgagctgcaggatgtggtagaagccctagcccagagaatatcaatcactgcctgctccttattgaagtgtcagagagggaaccgggaaggctagtagg
gcaaaccag UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 NA NA NA intron:ZNF831:NM:178457:3/5
0 chr20 60004034 60004338 1000508 0 + 13096; RIP_Alu_chr20_060_01 NA NA SINE Alu Yb9 caagaaagtgtgcaaggccgaggaaaacagcagtcgagagaaactgaatgtgagatggcccaggtgttgaacttgacaaaaaccttataaaacagcttta
ataataagctcaaagaattaggggaaatataaactgtaaaaaagaactagatggaaatcttagaattgcaaaataagttaacaaaatggaaacttcaact
ggagatggcagaaatccatctgccaaggacctcgtagacacatcagtagacatcttccagtctggaaaacaaagagaagacagactgaagtccaggaaca
caggctcaaagacctgcagggcagcatcaacaggtctaacatacatgtaactggagccccagcagaagaaagtaagattgaaatggAAAAAAAAATTTGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAATTTGAagaagtattagccaaaatgttccaaatttgatgaaagacactgacctacagatctgtgaagttcagagaacctgaaacagg
ctgaatatcctgagaaccacagcaaaacacaacacagacaaacctctaaactgaatatccagagaaccacagcaaaacacaacacagacaaacctctaaa
aaataaagaacatctcaaaacaaagattgaaagtcatgccagagacatgaagcataccacgtacagggaacaagcttaaaaattatagcaggaccagccc
atgctacatggtgagaccctgtctctacgaaaaaaaaagaaactacaaaattagccaggcatggtggcacgcacctgtagtcccagctactcgggaagct
gaggc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:TAF4:NM:003185:14/15
0 chr21 29523697 29524027 1000509 0 + 54074; pAlu21-29522172; RIP_Alu_chr21_029_01 CAGTTGTTAACCTGGAGTGCACAC CGGGTAGCTCTTTATAGCTGTGTGAC SINE Alu Yb8 cttttgtaaaaacgaaaataagacataaacaaataaattaattacaaatttgctgtgagaccaaaataccacacagcccccaaaagctgagatagtcact
gcagatattgaagatctgcattctaaaccacatgttttatccccaatgttcagctcaatgtattgtgcttggtagattcttaattattatttgttcagta
acaaatataatgatcaggtctttgcaggagtattaaattaaaatttgtctgttacactttaatggtcagttgttaacctggagtgcacacaaataatgat
agatcagcaaggagggtctaaaaaccacatactaggaagtccaatggaagaattaggcgtgtacagaagagaaggttaatttattaagagaCCGGCTATT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGCCGGCTATTttattatagattgtcttattctgtcccaagggaagtattctaattgatgttatagggagg
caggtttaaactcagtattaagaagagctttctataattaataaaagacaatgatatggacttgtattagtttgttgtcacacagctataaagagctacc
cgagactgggtaatttataaagaaaggagttttaattgacttacagttccacatagctggggaggcctcaggaaacttataatcatggcagaaggtaaag
gagaagcaagcacctccttcacaaggcagcaggagagagagagaacaaggtgggaagtgccacactttaaaccatcagatctcgtgagaactcactgtca
tgaaaatagcagagggaaacccgcccccatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intron:C21orf109:NR:027072:3/4
0 chr21 31014759 31014992 1000510 0 - Yb8NBC208; 10869; RIP_Alu_chr21_031_01 ATCACTAAAGAGACTGTTGGCGTTT CCATGGAATGACATCTAGGTTGTT SINE Alu Yb9 cctcctgagtagctgggactataggcatgtgccaccacattctgctaatttattttattttattttgtagagacagggtctcattatgttgcccaggcta
gtctggaactcatgcccttaagtaatcctcctgccttagcctcccaaagtggtgaagttacaggtgtgagccactgtgctcaggtaccaaattttagaag
cttttttcagattgtctaagattcaatcctcactgagcatcttaaatatagattttcaactctcatgggcaagaaaataccatatttaggttgagttgag
actaattttgtaattgagtcccatcaaaggtttattttcaaaatattcagtttaatctaggcaaaactgcttacccaatggttattttAAAAGATGACCT
TCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGG
GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCG
AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATGACCTgtttgacttaatgtggcctatttgcttgtgctgtataaaaacgccaacagtctc
tttagtgatttggaaacttgaacactcataagattttcatatttgaacatatactctaagacgataactttcaaaagaacttaaaagttatttctcaact
taaaaagttattttgttacacaaatatgttagtttattgaagaatgtcaagctggttttctttacacagttgtcctcctaaggataattaaaatgctatc
atggcgttccagtttgtactcctactacaatacctggcatttaggtgcaagtaaaacttacagcgcatatgtaaattgtgaatactctgaaggtgttttt
attttatagtgtttgatagcacattttaaaatct UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 357 111 NA intergenic
0 chr21 39266187 39266498 1000511 0 + 19513; Yb8JW664; RIP_Alu_chr21_039_01 CACTGAATTGTGGCATTAGGAA CTCTCCTGCCTCTCTACTTTGCT SINE Alu Yb9 ctgactgaatctttggatgcccccgctccatccccatcttggcacattggatacacaccagtcccgtcattgagtactgtctctcttatgagacggaagg
caccttgagcacagagcattggcctggtcatcttcccacccctaagagtggatgcttcacaagtattagcaagataaatatctatgattttaaattccca
tcgtaccgccaacccatcttgtatgcatttctaaaaatgtattatcttgacattagaataccttttagggaagcacctgttgctgttttccaaaatatct
caatacagctgcttggggtggaaattaagaatatgaggatatggatcagtgtaaaagaaatcactgaattgtggcattaggaattatcttAAGAATTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATTTGAgaaaggggcccggcacagtggctcatgcctgtaaacccagcatgttgaaaggcctaggtgggaggatcacttgagccc
agaagttcaagatcagcgtgggcaacatgacaaaaccccatttatacaaaaaatacaaaaattagctgggctcggtggtatgcacctgtggtcccagcta
cttgggaggatgaggtgggaggatcacgtgagccccaggagttcagggctgcagtgagccatgatcacaccactgcactccaacctgggcaacagagtga
gaccccatctcaaaaaatgaaaccaaacaaacaaacaaaaacagaatttgaaaaaaggaaaagagcaaagtagagaggcaggagagacaagggggcagag
agctgaaaaccg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 725 403 NA intergenic
0 chr21 41324767 41325073 1000512 0 + pAlu21-41323632; Ya5NBC243; 528; RIP_Alu_chr21_041_01 CCATGATTCGTCATTCACCA AGGAGACCTGCCAATGAATG SINE Alu Ya5 ttgcatctccctaatgattagtgatactgagcattttttcacatgattcttgcccacgttgtgtcttcttttgagaagtgtctgttcatgtcctttgccc
attccaaaatgagattgtttgttttctgcttgttgacatgcttgagttccttatagattctggatattggacttttgttggatgcatagtttggaaatat
tttctcccatttgataggttgtctgtttactcttggttaatcctcctacatcacacgcctaccttcaaaagtgttctgaattcagggcctccatgggatt
ctactgagcacatagacagctgcagagttgagggtcttcctttccatgattcgtcattcaccatcactctacacagttttgtctttAGAAAATACCTAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAATACCTAGAaagctgtcattcattggcaggtctcctccgattctctttctggttgaaagagaatacattttttattctcttactttcc
ttataatagcaacttcagaggaagagataaaaacacatacgttccacctctcattctaaactggaagccactttctgaaggaatcaacttcccaaagaag
aatttcatttagttaattattcaaaagattcaactaaaataagaaaattccattcaatgacattttcttgggtatcactttgttcaaagtacagtgcttg
actaactcaggaatttacaagacagtaggatttggttcttgcccccagataatttatgttctgatagaaataacagacatttatcaacatgttgtaactg
tacattt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 406 86 NA intergenic
0 chr22 16663916 16664218 1000513 0 - 19250; RIP_Alu_chr22_016_03 NA NA SINE Alu Ya5 gcgcgattttggctcactgcaagctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggtacccaccaccccac
ccagctaatttttgtgtttttagtagagacggggtttcaccatgttggccaggctggtctccaactcctgacttcaggtgatccgcccgcctcagcctcc
caaagtgctgggattacaggcctgagccaccgcgcccagcccgcatctcctgctttctttacccgcccttgctcgagtgagaagaggtagtgagctgctt
tctcctctgggttcccggactgcagctactagctttttggatttagaattccagcaagttccagggggaaatgaaataaatAGAAAAAGGAAACTCAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCGGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAAAAAGGAAACTCAGGAtgccttgtgaatcacacagtgccccaccactgacactcataaccctttgaaggtgggctcatcagctcatcacttccc
ctttcccagaccattatgctgcgtaaattcaagacttctcgggttctgcccaccacgtgggggctgctgcttgaaggggacgttccccactgcagggagt
ctcttgtggactttaggccctgttctcgccacgcccgtgaggacgacggcaatgccagaattaggtttcttttctgtttctgctcttgtgtcattcttag
agcacttagtaatattcgttaattggagggaaaatcacccttttgagatctggagcctcatatgtaaaacctggttgcccttgcccctctgtgcctgcat
ccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:MICAL3:NM:015241:29/32
0 chr22 31625773 31626076 1000514 0 + pAlu22-31620226; Yb7-Yb8NBC125; 1089; RIP_Alu_chr22_031_01 AGCCAGAAACCCTGAACAAG AAAGGCCCCAGAAGTATACCA SINE Alu Yb8 taggagaagaaatccttttgtaagcaggagtgggactggggaacggaggcgttaatcaagtgagactttcatacaactgagaaaaggttaacttccccct
aaagaaggagcgtgtgtgcagggaatgaggggttggtccatgatggaggttatgggcccaccagtggcctctatatggctttatctagagcatttctgaa
ttcatccacttaaaatttaattaggaaaaagggttattctgcttaaaattaaattagcttggaaacaccacatataataaggcctggagttaaaatgctg
ggttcttgtcctggccctgaaactcactagccagaaaccctgaacaagtcaatttccctcttttgagccttcgttcttttacagttAAAACAAGGAAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATATAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACAAGGAAGTCagatggtatacttctggggcctttattagctaaaatattctgagagagcgtgaccttctagtactgtctcccatggaactgt
cctggtgaaacccagagatcagctcatgaagatggacttgaggcaagagagagctgaaatgaaattgggcttgagttgccactcagcccagcaccatctt
ttcagatccttgttctgaagcagcagatcctcttcatcttttcagccctgaaggaatcccttacatccgggtcactgcaaagttccgggcaaatttcctg
acaaacttctgttcattttttaaaacccattgtaaatgttatggtcatttgttcattcaataaacatttattgaataaatactctgtgccaggtgttctt
ctaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 NA NA NA intron:SYN3:NM:001135774:4/14
0 chr22 35457036 35457193 1000515 0 - 20709; RIP_Alu_chr22_035_01 NA NA SINE Alu Y? ttgaggtgtcttccagccatccctgtgaggtgtcaagaaggctgttggagaagccagtctaggatgcagaagccagctgtactggagatagaaatcaggg
agttggcagggcacagtggctcatgcctgtaatcccagcagtttgagaggccgaggcggtcggatcatttgaggttaggagttcaaaaccagcctggcca
acatggtgaaaccccatctctactaacaatacaaaaattagccgggcatggtggcgcatgcctgtagtcctactacttggagggctgaggcaggagaatc
acttgaacccgggaggcagaggtggcagtgacctgagattgcgccattgcactccagtttgggagacaagaatgaaactctgtcAAAAAAACAAAAAACA
CACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAG
CCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAAAAAAAATAAAAAAAAACAAAAAACAaacaaaaaaaacccacaaacaaacaa
aaaaacagaaatctgggagttattgatgtgtagccagcatgcgtgaggatgttcccatttgtccccaaggatctagacatgacacagggaggaggaggtg
aaggccctgtaatataatagagtcaggaatattttgtaaagagcaccatcaaagccatattaataggaggactgtgtgtgtttctcatgtcgatcaagct
gtgctgtcttggaaaatcaaatactttcgtgtttaccttgaagtaaatctaaagaaaccagccagtgccactgctgaagttgagacaccaagttgaaccc
aagcaccttccatgttttcccagcaacgtccctcggcctcaatttactcgtccataaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr22 40470438 40470746 1000516 0 - 14672; RIP_Alu_chr22_040_01 NA NA SINE Alu Ya5 cagccaaagtcctctttgccatacagcagagtatcagaaatcaagtgttgcctctagaacttcacccattgtctgaatcccttccacccctaccttccat
gctattacttcatacctcagagggcccctcacctgcaggcacttctaaatccctccagagtgctgaggaggaactttcccctttgaagaatggccttctc
tgaatctctactggaggcatggccctgaggtgggaaggagagacaggaacctagtgatcaagtatatgctgtgtctcagtctatgcttggatgactgtag
acctcttcttctcacactgcagtctgacattcccatacacctaactttccaagagatcttggctatatccttgcaaatagctcctttaAAAAAAATCATA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGAGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATCATAgcaaagctgggcatggtggctcacgcttgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggag
atcgtagccatcctggctaacatagtgaaaccccgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggcacctgtagtcccagctact
agggaggctgaggcaggagaattgcttgaaccccggaggcgaaggttgcagtgagccaaaatcgcaccactgcactccagcctgggcaacagagcaagac
tccgtctcagaataaaaaaaaatggtagcaggggcccagcgcagtggatcatgcctgtaatcccagaactttaggaggccgaggtggaggtcaggagttc
gagaccagc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:MEI1:NM:152513:12/31
0 chr2 5405234 5405486 1000517 0 - 238888; RIP_Alu_chr2_005_01 NA NA SINE Alu Ya4 tgattctccatggccttgacaggtgcatggcctctgccctgggcagtgtggagtcagttcccttccctcactctaggattcccctacttttccaatcact
tccaatcctgcctttcaggtgtttagcagtgtacagagggctgggtgggatggcagaacccgggcactcctgttgacgatgcatccttcacttcctccgt
ctccttccctgtctcctccttttccattactcaagccagctgacctcagaacttcagaaaatgaatgtaaatgtatattgttctcaatatttctactttt
tctgttgtggaaacttcctttgtatcataatattctttttctttgattctccaaatgtagatccttactattttaaaagaagcattAGAAATTCAGAAGA
CACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTA
GTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCG
ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATTCAGAAGAaactaagacttttttgtttagcaagatttgact
ttcagcctattgtccactatagaattagtagatcaaatttaatatacaaagttgcataataacttctttgctctggaatgtttctgtccttttctagtga
cacagatgtcctgatccgtttgtctggggaactgtagtgtaacatgattttggaaaaaacaggtcatataacatttaaatatcaatatatttttatgtta
tttatatagtatgtatatattatatataatacatatgaaataagtataaacatatattatatatatttatctttttctatctcaaaattttaaattcaat
gttattttaggataatatatatgtttatatattatatatcttaggtatttaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 21426299 21426588 1000518 0 + Yc1RG72; 665; RIP_Alu_chr2_021_01 GTAATCTATGGAGGGGCCATTT TTTGGGGAACTTAACCTGTTAGC SINE Alu Yc1 ctacaaaacggctgctgttttccctctaccctctgtccaaaatttcctgagaatctcccttgtgcctattctatccagacatgtacaataaagggaactc
tgggaagtgtagttcagcctacccaagtagatacatcacaaagccattttgccttcttttttttctaagcagcagagttcttattctgataacattcact
gactctgctgtaggactagatataccagcacaaaagtaggctggtttgtgagagatcattcagtcaaggcattgtacataattaatcttagtagtttgag
ggcagaaagagtcagtcatcatttgcacaaatgaagaccttgtaatctatggaggggccatttcaattgctattctaatcacagtAAGAATAAAGCAGAA
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT
GCAGTGAGCCGAGATCGCGCCACGGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAAAG
CAGAAattatgtgacttgtgccatttgatttggctaacaggttaagttccccaaatcagggcacataaccacttaattttttccatagaaaagtgaatgg
acatttttgatgacttggatacctgcttttgaatcaaaacacatagattttaagtatttgtctcaaatattctttcctcagaagtcattgaccatgcctt
ttcttgaagcctagttatacagaactaaagaattttcataggcataaacaaggaagaatttaaattaatgtgtaaaattgggtatcttaacttaggtact
ccactgcagtatgtaaatatcaaggtagcaaatatataactggatagtgttaggtatgagactgcaaagcaaaatgatgtatgtgctact UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 61 414 109 NA intergenic
0 chr2 34887959 34888186 1000519 0 - 13032; RIP_Alu_chr2_034_01 NA NA SINE Alu Ya5a2 aagagcttcaaatggcctaacaacatgttttcctcctgactttgctcccatggatcacgtctcttgtcaagcaaccttccttatcatgggaccagcaccg
tgcttgcttatccctgaggagcaggtttcaattccttcccagcctgcagagctattcaaacaagctaatcacatccttccctgggattcaggggtcactt
tgccacagcttctacttgtccactgttcctaaatgcaatatccatgtggttcttcatggcatgcactgcccttccccccagactgtgagtggatgtgatt
aataattgctatctcatcttcctagtgtctagtgtagtgtgtgtgccattctctcatagccagagggtgtgaatccctctctcatcAAAAGGGTAAGTTA
TCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGG
GAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCC
GTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGTAAGTTAttagaggtgattaaaacaatggacaattttttttttttttgagactgagtttcgctct
tgttatccaggctggagtgcactggcacaatctcagctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgg
gattacaggcatgtgccaccacgcccagctaatttttgtatttttagttgagacagggtttcaccatattggccaggctggtctcaaactcctgacctca
ggtgatcttcccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcacctggcaacaatgaataattttttaatggagaaaaaaaaagg
aataaaactacgataatgcaagtaaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 38704938 38705232 1000520 0 - Yd6JX90; 20509; RIP_Alu_chr2_038_02 TATTTGAAAACTGACCAGCCAAT CATCATCCAGGAATAAGACCAAA SINE Alu Yd8 ccgaggacaagaagtaatttggagatagccagttaaacgtttaccagcacacactgaatagaggcatgtgctgggacaaagagccgtgtacttagagact
tcaggatgaaaatgcaaatggacaaaaccatcaactccatcagtgggggcagcagaataccatgagtggcagagaaaggaacattttcattcaggggtca
tcatccaggaataagaccaaactagtccttccacagcagagaccagcaaagatcctggataccaactggatctgaagcccctccccctactgccccagaa
tgctgcaatccagtatcactgagctgccatcctgaggatgccactggacatctgtccccatgactcagtcatccagaagactgtttAAAAGCCGAGACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
CCGAGACTAtgagacttttgattggctggtcagttttcaaatagttggaatctagaatccagttctcatcttagattcacttttccaccttgacttttac
tcccccttagcgaggcacacattgtcttctggtgctcacaggccatagcagttaaagtggtagacatctatttgtttctgtctttttctccatagtgacc
agtcctgatggactattcacaatcgctcctccttggcttatcaggcctcatgcaaatcacatgctgtcccaaatgaccagtgaactgcctccgaaggaac
caaagtgacaggggctgtggagctgaggacctctctctaatccctccaggctgaaaaattaatggcccactttttctgatggtaaaataataatt UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 545 236 NA intergenic
0 chr2 40831655 40831975 1000521 0 - 9004; RIP_Alu_chr2_040_01 NA NA SINE Alu Yb8 aggatactgtatttggaatcaaaatcctgggtgagaatttttgctttaccactaataataaaacctaagggagtgattgaaccaattcagcctgtatttc
ctatctgtaagagggaaaaataatgccttccctatgttactttcacagttgttgggtagatgtaacttagggccatggaagagccctaactctaaatcag
aatatctaagttccattcctgactctatcactgatgcccttcataaccttaattacaacacttttctgatcttttcctcatttggcttacttctaaatga
aaggctaagtcacatgtgtcttattgatattagtactttctagttagattctaaagtaatttcaaacttacagaaataatgtgaatagcAAAAATAATTC
CCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGCGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCGGGGTGACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATAATTCtcatactttatgcagattcaccattttttaacattttgtcacaattgttttatcattcttccttgcat
atatatatacacacacattgtgatatgtatatatgatttacatagaaatatatatttgagaacattacatatatcatttccatttatacttcattatgta
tttcctaaggtataaaacttacactaacttcactgaagtattcaggtttttaatattttaactataagcaacacatgtgaattatactgtgaaatctaaa
gcactactaaaattataaattgtttttcttaagaaactagcccaaaaatattttataaaagagctagctatttttcaaataaaagattgaacctacattt
ttatagatttggaaacattgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 44637106 44637412 1000522 0 - Yb8JW684; 3922; RIP_Alu_chr2_044_01 GGTAGCATCTTCATTGCAAAGTG CCACTGTGCCTAGCGGATTA SINE Alu Yb8 agtggacatttctctgacaaataatacttggaaaccacattatcattaatgatgaatgaatcctatgtctagaaaagttaataaacaaggcatttcctca
gtgaaaagagttaaagcaaaccacataggtgaaagtaaaaaagataaaacttttgcatgctgttgcattccagcagggagtgggtagttcctgtgcattt
tctccctgaaataaacttacatcatcctcacttgtatcattttgtaaattttttttgtagagacggggtctcattatcttgccaggctggtctcaaattt
ctgggttcaagggatcctcctgcttcggcctcccaaagtgctaggattacaggcgtgagccactgtgcctagcggattaatcctttAAAAAAAAAAAAGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAaagaaaaattggctggacacggtggctcatgcctgtaatcccagcactttgagaggccgaggcaggtggatcaccagag
gtcaggagttcaagaacagcctggacaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggcagccacctgtaatcccag
ctgcttgggaggctgaggcaggagaatcacttgaacctgggaggcggaagttgcagtgagctgagatggcgccactgcactccagcctgggtgacagagc
aagactccatctcaaaataagtaaataaataaaaataaaaaataaaaaaaattgtaggtatttttaaatagcctttcactttgcaatgaagatgctacct
ataacac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 740 420 NA intron:C2orf34:NM:024766:3/11
0 chr2 54546999 54547246 1000523 0 + 13482; RIP_Alu_chr2_054_01 NA NA SINE Alu Yc1 actgagtggttgtttgaagaagctttcaggattaattgtgctttgacatataaaaataagatgttatcaagattgctttaaaactgacccttgtttatag
gagtcatacgtccattcttaagaaactctcaactgtgacagtaaacatctgagtgatttttagaaccattttaatatctctgctctagaatcgagaatgc
cctgttagttctgatttttaatatacaaatttgaagccactagttaggcagtaaaatatgtattagaacataactatagatttttacccaatagatcaat
tagtatgaaatttaggatgatatataagtacaacagaatttattcctttgaggtatgtattttcaaagtgtaatttgtgtaattAAGTATGTTTATTCTT
CGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGG
AGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCG
TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATGTTTATTCTTagaaagttcatgagcctattaacattggttatcttg
ggtaatggaattgcagaagatttcatctctgtatatttttttctccatattttttaagttttaggaaataacaaattcttgttctttatcaaaaatatcc
taacacttctgaccaaacctcattttagctggatacaaactaatcaaataatttaccagctaaatatactttctgctgttcaatttttttctaccaaact
tacggaaaagcagtattaataatgaagatataaagaacactgaaatttttgaaagatcttttcattccttgtttaaatgttcatttttgttacagccttg
gcagttcattacttatgcagagtgtgggaaaagctctaagaactggcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SPTBN1:NM:003128:1/36
0 chr2 57196248 57196560 1000524 0 - 18879; RIP_Alu_chr2_057_01 NA NA SINE Alu Yb8 tttctaccaacagcctacatataacaattaaagtattctctgagacaataagtttttctcctgtgctcctcacttcctactgcaccctcactagaaaccc
tttgaatgcccataaactaactaacattctgttcaagactccccaggcacttctataatgtttcttaaacttctttcagcctctacccattacctaattt
taaagccacttccacatattttcgtatgtgctatagaagtaccccactttctagtactgatatctgtactagcttcctattgctgctgtaacaaactgcc
acataaaaagctgccaggaagtaccccactttctagtactaatgtctgtactagtttcctattgctgctgcaaaaaactgccacatAAAAAGCTACTAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGCTACTAGCcccgggagaggggctgatgtatgcaaagtgcagagaaagagagaaagagatagatagagagagacagagagag
agagagagagacattgcctggtgttcaaatcataaggtggatcttagcactactgcaaaactagttatgaggctttaaaaaagaatgtacaatgagtcat
gtgctcttataatttaaaaattcataattagaggcatttgtgattgtgtgttgcaaaggaatccctcaattagtcttatgtacacctcagtccatctcat
aaaaacattagggaaacatttctaccctactaaatgattctataaactgaaaactgaaagttagtttttatatttttttaatattttatagatctttaaa
aagttaagtgtgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 65661024 65661321 1000525 0 - pAlu2-65765124; 18653; RIP_Alu_chr2_065_01 NA NA SINE Alu Ye5 gctttcccatctcttctcctcatgaaagttcccaatatgtatttcaagtggcacagggctcttgagaggtcaacgagttgcctacagcattggtcaaatg
ccaaatcaaatatgcatccttcttctgaaactcccctgccctacctcagtcccctgtccctcaccccagcttcctctcgggctctgctttctggtaaacc
caggcggctgagctcagattatctgaggtggcacattttaatggtcggttcttattgctcttcctttcccttttctctattttctaattattcttacaat
aaacacatcttaatctcacaattttaaaaccttttttttccccctcaagcctataatcacatctccaaggctagtttacctatgttatAAAAGTAACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGTAACATGatattaggattaggggaaagtgcaggcatgtgacattaaacattgctagcaaaacacatacccaacacaggtatgggtagtggggagcag
gaagtcggagagagggagacagttattcttcctgattgtttctggatgttctacagccagctctgaggctgcttctcagaagaggaaagaatcctgtgga
gaaagaaaaggaggcagggaggcagggatggagggggagaaggaggatgggcatcctgtcttcctttgttctccagcctggttccctgagacagtgggga
ggagggccccttctgctccaggccttttgttcagcagaggtgctaactggttggcaggcccaggaaaaaggcagactcagaggggagcggagaaggct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 78911167 78911491 1000526 0 - 9831; RIP_Alu_chr2_078_01 NA NA SINE Alu Ya5 atgatggactgtgtagatatttgcattgtggaaaatgaacttaaggaaatcaccaataaaaatacaaaagatctgataggattgaaattgtaatcaatgt
cggtaattaattcaccataaaggaaataccaggagagctaaaatcaattaaagagatgtctaccttattgataaatcagagaaatcaaaattatatcaac
cctgaaataccacttcaaactcagagtgggaaaaaaatgtattgtcaactattgagaggtagtagagaaatggaagttctcttgttatgctagtgggatg
ttaatgagtgtgttcaatttataaggaatgtggcatttcctagacaatgaagtccagtgttgtcaaatctatcctacatgtgtaaccttAAGAAACTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACTCATacactgacgcatggagatattcacgagagtgttcattaaggatttgtttgttctagcaaagttg
aaatacgtcttgtccaccaaatgaaaagaagaatgtgcctgtccttgaatatgacacagtttttcctgaagtaactttaaataaatcttgttaaacatta
taaatatgaaaagtaggcaacaaaaggagacatatagcacaatcccaattactaaagtatgagtattcaatacagagtgtgggtctataagaaaactggt
gatgttagaaatggacctgcaggtgcaggataaatgagaaacactgataaaataatgatagtgacttattaaataaggataatcattagcacaattctca
gtctctggaatccttaagcaaagga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 84611965 84612244 1000527 0 - 238297; RIP_Alu_chr2_084_01 NA NA SINE Alu Yc1 aaactatgaaaacattttcacatatgaatcaagaattatgttttaaaatcaccaaataacccactttccatcagtttccacttaagatctacaagttctt
caccaaaaacttacaaagaactatacaagcgagtaaagtagtggtaggaatgacaatattattaagggttttttttaattgaagggctttaaattacatt
atatgttaattcttccatcttaaaaaaatgaattctctcatgttggaaaaatcctctttttttaccccaattctccttcgtctaccatctcttctccttt
tgacatcccaaaattaatgtatccgaacccaaacatgtatttttccctgatgattctgctccattcagtcttctatgtctcagttgtAAAAGGAAAATAA
GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC
CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAAAAAAATAAAAAATAAAAAAAAAAAGGAAAATAAatcttga
ggcccccaaatcactaaacgaaaggtaaatgtcaagctgggaactgctaatggcaaacctgcctcccattctattcaaagtgacccctgtgctcactggg
ataaatgcatatctcattgcctcatttggaaaggctaatcagaaactcaaaggaatgtctctcatctacctatgacctggaagccccctcctcgctttga
gtttttccatcttggccttgagttttcccacttctccagactgaacccatgtacatcttacacatattaattgatgtctcgtgtcttcctaaaatgtata
aagccaagctgtgcccgtactaccttgggcacatgtcatcaggacctcctgaggctgtgtcatgggcgtgcctccatgat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DNAH6:NM:001370:4/77
0 chr2 102688929 102689250 1000528 0 + 2565; RIP_Alu_chr2_102_01 NA NA SINE Alu Yb8 atttccctttgtagagatctccattccattctggaagggatttaattatttcaagttataatagttatagcccctcacaaagtaattttggaatcagaaa
ttaaaattctgatttttaacatgaagttttgctatacaatttttaatctttaatatacaataagtgccatttgtatagtttaagtaagattttatatttc
ttttacaggcttccacttcaacctcccgatatttatccttacctaaaaatacgaagcttccagaaaagctacaaaagaggaggactatttctattgcagg
tagtgaatatagttggagcagaaaaattttaaatttatttgccaatgtttataaactagacaaattttcctattatttttcttcattAAGAATGAGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAAAAAAAAAAAAGAATGAGTTCCaatgagaacacttggacacaggaaggggaacatcacacgccagggcctgttgtggggtcggggga
gtggggagggatagcattaggagatatacctaatgtaaatggcgagttcatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgc
acattgtgcacatgtaccctaaaacttaaagtataataataatttaaaaaaaagaatgagttcaagagtttgcaaatctaaaataataactgggtgaatt
ttaattcgcattgcaaccttttggaatggcattctgtgcagattctaaagaatccaatcagttattttccagcaaatattgtcatcatggggcccaaggg
caggtaaacaaaaagttgtaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SLC9A2:NM:003048:11/12
0 chr2 116903597 116903598 1000529 0 + 16722; RIP_Alu_chr2_116_01 NA NA SINE Alu Yb8 gtagaaaaggtataaagtcattaatatcagataaataaggacagaaaaactataacccaaatatgacaagtgaagagtggaaatccacaaagcatgagag
agagtactaagtcagctatcatagtaattaattaaagacaaaaatcctaaccagctggtcaaatgagtccaactactttctgtccacaatccctaatacc
caatggcaatctaaaaaccaaaagctgtaccataaatgatgtgaactacttgcttggggtcaggtttagttcacacacagattaatgagaaagaaggaga
gagcttcaggaaggtctagacaggataagaaatggagtggggaggtgggagagaagccatttcattcatggatgaaatttacttatgtAAAGAAATTATT
CCTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAAATAAAAATAAAAATAAAAATAAAAAAAG
AAATTATTcttattttagctgctagagggtgtcctaagctttgatgcgagcctcatactaatagaccttgagtgaacttaacaaaaccattcttcatttt
ttacacatagcatttgattatcccttctacttaaacaaactcatatcagcaatctaaaccaatcactaagaatcataggctatttgaaggaaacaaatat
tgttaaagaaaaaaaaattaagaaatcagccaaggtgccaagaaaagatgctaaaaggcaatccagggaataaaggagattttaataaaatatatttgct
agttatgagaaatttgagagattattgaaaccagaaaacaactataaggattaagaaaatgaaacaatcagaaagaattatggacaaattgataaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 118622615 118622751 1000530 0 + 17954; RIP_Alu_chr2_118_01 NA NA SINE Alu Ya5/8 attcaacccagtacacttacaggtctctggaatatggatctattactttttgtagggactcatatctctgctccctaactcaggttttacaagaataaag
ttttacagaagtacatcccccagtctgaaatctggaggagttcagaatttgagtaactgggtctgtccctggtattgctataattaggttacctttattc
ctttatgaatcattaactttgaaaactgctggttctatctgtgacaaccagtgatacatcatctttaaccagtctgtaccaccataaaaaaaaatgttgc
ttaagtcctaatttattgctccacgacacaaatggtgcatctcttacaaactcagccaattttaagggtgatttctgggctgcttAAAAAGGCTTCTACT
TGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC
TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTTCTACTgccagcttttggaaaatcttgctttagagattattattttctgtttca
ggacaaatccacgaatttggcctattcatgttagctatagtgagatgatgcctctcttgtccataaaacttgaatacccgggtgtcataagtgatttttc
tgaagttaatttttcccatactttgagttatcagtttctgacgtgctggtgtgcatttcagttgaggttttattacattgtgttggcagcacattatgtt
ttttacacatggatttgattgagaaatgaaactggaataagaatgaggtagcagcagcatctgctggaagactcaactattgctgttgtcaatcagcctg
attgattaaatatggtgatacacatctttattaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 134260762 134261076 1000531 0 + 7365; RIP_Alu_chr2_134_02 NA NA SINE Alu Ya5 gatagtgtccttgtggggcaaggatcaccattccaatcaataagtatcaaccttggctacattttgaaatcagatgaggagcgaggggagacatactgcc
attccacctccaagaaattctgatataacaggtttaggctgaggcctggacaggaaaactttaaggactgcccaatgcttctcaaatccagccacaatta
aactctgctgatctcaatagtactgaccgtataacaggggttctgaaaatgcatgtagcctcattacatgctgctgatttgagcctttggctccattttg
acattgtgtgacacataataggtactcagtctatatgtgttaactggcatcctagcaaatgtttgattaatgaataaattaatAAATAATTGATGATTTA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATAATTGATGATTTAactaaagtatagaggagtttagaggtggcagaggtcagcatggattggtttagataggcagacataag
ctgagcctgaggtcaacttctccttgttatagaatgttctggaattctggaacatctaggctggaatgggccatagggagcgtccagttcaatggttcat
aatattttcctgctcacagaccctttagaatttgatgaaagttttgaacactcatcccctcccctccaaccaaaaagaaaaccatagttatgtattcaat
ttgagcaggttcagaaggctcctggacaatggtttcccaagctaaattcctaaggtccagctcaacatgtcccttgataggaaatgcaactgatgcccag
agacagtgagtgatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 142067474 142067793 1000532 0 + 10306; RIP_Alu_chr2_142_01 NA NA SINE Alu Yb8 tctgccaaaatttgggaaataagaaaatttggctattgtacaaacaaaactctagagaagagacaacataacaggactagataatgatatttctgcaaat
ggataattagggatttcagagggtgaagaatatttacattccagggaaggcatgaaacctttaagggcttttacaaaaacaaacaaagcatagaaaaaac
ctggacccatgaaagataaacagcttcagtgtatttctaccaggaaaacatttcatttcattactcaaaagtaccccctcgacatatatatgtatgaatg
aatgatactactttgttgttgttagcaagaaatgtgtttattcttctagtttttatatctgtcacaagtgaggtatactgaatactttttttcttAAGAA
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAacatttctgattttcttaaatgtggaaatagaagaaaacagtcacttggtgagagcagcaggaggcagctaaatg
tctaggcagatagggacgtgtccctagtgaaaccctacctccaaagcctgtcatcagctgtcattagcttgaaagccaagctaaaagttacgtccttgga
ccagattgagaactcatcttcctgcttggcatgctttcccctgattgatccccacccttcaccttttttatatttatataccctttcctaattggtcttc
tactctgtcatgcccacctttgagtggtgtctttgctttgaccctttttgcctactcacaagccaatcagcatgcactctgagtccataagaggccccag
acctagccagatgggggact UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:LRP1B:NM:018557:2/91
0 chr2 145063239 145063240 1000533 0 + 238613; pAlu2-145369095;1104685265294; RIP_Alu_chr2_145_01 NA;NA NA;NA SINE Alu Yb8 atttagcatgatatgtgcattgcttgtattgattgctcaagagttactcaattcagaaaattaaaaatatacaccctatagtatacagtatatactacat
agatgctgtgtatactaaagatactgggtatccgtagtatgtagtatatgtagtatacacagtatctatgtagtatacactatgtagtatatactacata
tacacagtgtctatgtacggtatacacacactacacacactacatagatgcatattgggcaatatggaattttaaaacaagaaacaaaaagatagtattt
ctactttgaggaaaaccaacatatttgtgtaaaagaaataaaactctttaaaattagctgttttagatttgacatttattcatcaAATAAATATTTACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAACAAAA
AAACAAAACAAATAAATATTTACAAagagatgaagaaggcaccatgatgccctccgagagctgttaatgtaatgggtttaagacaaccacaatagaatga
agaactttatttttcacaagacagccaaagaatgctgaaatgaaaatgacaaaaacatctaacgttgaagagtccttcttacgggccaggtgatatatgg
tctattttaggtgtgttgcctcccgtaatttgcacaatgacttcataaggcaggtactcttacttcctctgccttgtttcaacctggccttcccagatga
agcaaccaggagcgataagttgtagtaagttgctggagggcacacagctagcacatggcagtggcgggcatgtgaatgggggcagtatgaccgtacagct
gaagatgcca Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr2 150472499 150472500 1000534 0 + 13570; RIP_Alu_chr2_150_02 NA NA SINE Alu Yb8 attttaacaaaataagaaagattcttagcattttacaactcagaagtcctctgtacactggaattacagctgaatagtttgcagagatgagaaagctgac
actaatgcaataaattcagtagatttcaggaaaactacttggtgcacacagtattataatgattgaatttttcaaagttttgccttaactgtgtgatgaa
agaatttaataaagggaaggctgaaagtaacatggctttttaaaatgtagtttcaattgtattcatttctaggacattgattgctatgtatgtactgaaa
ggaaattcctcatgcctcatgagaaaataaattttgtgtgcaaccaatcttggccaacatttatttagaaatgtctgtagcttagagAAGAACTTACATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAACTTACATTatttttagatacaaataattaaagaattagcttaatttcaattatttttaatgcagccatgctttcctaa
tgagcagatttctttaaaaaaatcaagcaatttaggaaatcctacaggatagcaaatatttgctaatttaaatgtgaataacatctgtagttatttggaa
tataagggagataataaacagcgcttccaggaaaacccagagtacaactactattcaaacataaaactatttttttaactaagctgtatgccagttggtg
cagcagatttggaatgcaaagtttgcttgcatttagcttaaaaatttgtttttgagtcaattttaaaattgccattttaaaattaatatatactcaaata
agctttttcatactcat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 152325548 152325849 1000535 0 - pAlu2-152581221; 17093; RIP_Alu_chr2_152_01 NA NA SINE Alu Ya5 tcttcacatggcattctcctctctgtctctactcctcctacaaggacaccagtcatattggattaagaacccgtgctgctctaggatgacctcattttaa
ctcactgtatctacggtgaccctatttccaaatgaggtcacattctgagaccctggagattaggacttcaacatatcttttagggggacacaaacccgta
acacccttaggtccagtttgtttcaaaggattttcaaagtttcacaggattcatctcctagcttattccacttcctctttgaagcctcctgacttactaa
aaaataatttttaaaaaatgctgtagcaagatttgtgggattatacatattgtgggatacttcaaatgttttaaccatctataacgcAAAAATAGAGTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATAGAGTGCaacacaactatgttattcacaagataattacagaatttactttgaaaatattaatttacagtgtactcttggaagtaggatccaa
gttttcaactccctaagaaaagacaatttattttaatcctgtgggtttatctcaggcagcaatcgtgtgcctcattagtcatgacttcagactcctacat
ttgaggcctgttgcgatagtgaggctgggccaagggaccggctccccacagataaccctgctcgcacttaggaagaagccatttttgaattgacatgtgc
cccattccttcccttctacctgctgagccaacacacgctgcctttcctctgacatcactctgttcatgtcctcatgctcctgactcagagcagtgcctgg
ct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 160564110 160564420 1000536 0 - 12521; pAlu2-160819787; RIP_Alu_chr2_160_01 NA NA SINE Alu Ya5 gtaaatcccactaggaaggtagtttggctaccatggttcatacttttacttcatttgcaagctctatagatttgtttattttgtgccagctcagccatac
atttataaagatgttttcaaaatgttttatccagcatttcaactagtttgaccaaaagaatctttcagggtacctaatctgctggttatttctcatagca
ccatttattttaacacatgagattttaggatagagaagagataagcacatgtattcagtctactgctcaatctttgagatgtctctctctgtgtttttaa
aaattttttctttctataaccctattgcataattaaagccattcatttaatgaacttttacaaggcatttgtatgacaagggacatttAAAAATTACGTA
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAGAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTACGTAatgtgcatgccttcatgttgctataatctgggagtggtgacagcaaatacaataaataactcatatatagattctta
gtcattcctgttactataacaaaatatcacatattgggtaatttataaataacagaaatttatttctcacagttctagaggctgggaagtccaagattaa
ggtgctagcagattcagtgtctgctgaaggccttcttgcagcgccctcacatggtggaaaggcaaaagagcaaaacaagactaggacactccctcagcct
cttttataaaagcaccaatcccattcatgaggatggagcactcatgactttattacttcccagaaggccctgcctcttaatactatcacatatgcgtttt
ggagggatata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PLA2R1:NM:007366:11/30
0 chr2 163374668 163374969 1000537 0 - 238625; RIP_Alu_chr2_163_01 NA NA SINE Alu Y aaggtaatgcggactgagagcagatctaaaggctaaagataggtgagaaatgcaaatataaacatacctttcctattaatattagctgacctctactcaa
accaaatgcagtataaaacatttctctttcctatttcatttggtttctattatgtgtgttgcatgtatcctatgatgtgatgccaaattcctgacggaat
ttctgctgacacccagtccttatcttcattcacttgttcacttttctctccacttcagaagtgtatccccagtgtaataaacttattttgtatgtgtaaa
gtataacttctattgttttcaatttatttgattgtaaaatgaatatcatattatagatgttatttgatcataaatgtatattatattaAAGAATAGGTGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCCAGACCATCCTGGCTAACATGGT
GAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAATAGGTGAgaacatatgattacaaaagaattctgtaatctttaaatcgatagcaactaaaattataaaaacttttacaaatcaatgagttaatg
ttattctagtgtcagagtacttctgcttctatcagtaatacggaaaatttgaaaattatctcttgcttatatatttactacctttagaatatctagaaat
gtttacatgagatgaaaaagttatacttgtgttatccttgtcctaaaagaaaaatattttttaaaactttaattcttgcaagatccaatggtcttactct
ccccaaatatatttctagcaaaatgtatttctgatatttcaagtctgacatttattttttactaaaatgcacaatgatagttattacaggaatcaaaagt
ac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:KCNH7:NM:173162:2/8
0 chr2 163386874 163386875 1000538 0 + 52571; RIP_Alu_chr2_163_02 NA NA SINE Alu Ya5 taactgtggtgcttatatttggacatttacatctacatactttcttcaaaagataggtttacaattatttttacatctttactttcaatacaatttatct
tggttctcactaaatcctggggagtggagggttggactgagtttacacctcactgtgtgaattgaggaacttttactttcagacacagtggtttctgaaa
caccatactgaaattgttttaatatagctgaaagacagctgtacacagagaaactgggagtccaagttgtccaaactgctgatattttcaatatagccac
acctaaattgagtttcagtgttcaaaattaaaaacaaattaaattgtccagaatttgattgaggccataatctccacaataaagcccctaaGTAAAATTT
TTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAGTAAAATTTttcaaaaaccgctgctaatttcttctttgacctatgatgtaaaaatttgttttacattattttactcagccacagatgtgggtgcaa
acttcattttgagcacgacactcaataggcatatcaacttaatatgtattttaaacccaattccttatcacatttttaaattattttatttagcacttct
attgcatttactgggtacctggagctgttttaagtgcttttacaaatgtaaacacggtcctcacaaagctgaataagataggttctattataatcatatt
tccatttccactgatgaagaaagtgaggacagggcagaaaggtaacatatcacacaatgtgtatgttccagatttggacctaggcaacatgactccagtg
ttca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:KCNH7:NM:173162:2/8
0 chr2 189667668 189667669 1000539 0 + 9148; pAlu2-189923457;1104685651546; RIP_Alu_chr2_189_01 NA;NA NA;NA SINE Alu Ya5 gtaaatatcaaaagcaaattagaatttgggagctcattaaaagtatctatttttatatctccaagtgagctgaattacataattcttatattaaggtaaa
tgttacatttattatcattcccttccatttccaagatactcaaatacctccgcagtaatctacaataaaaaagtactttgaggttgccactaggtggcga
tgtttaaacatccacaagtagaaaagacgaatgaccgggaactgttaaagaacttcatttctctcgtttctctctctctctctttctctctgacacacac
acacacacacacacacacacacacacacacacacacacacacacacacacataaatgttatagatgttaagatctagtatatttcccAAGAAACATACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAACATACCAtagtggttaagtgtcatgtgcaactagaacttagcacatcattgacggtccatctcctgacagtttgctagcttgtcactatgaagttat
ctgaacaatacacttaaaactgaggacgtgtgatgagagacagtcatgaaaatcattggctaatcctgaaggtcttgtaggagtatctcatactgaacta
ctgacatactagttctcagtccagagctattttgcctggatttggcaatgtcaagaaacatttttaactgtcacaattgtatgggggatggcagtttcaa
ctggcatctagtgggtagataccaggaatgccgcaaaacttcctacaatgcatatggaattatttggcctaacatatcaatagtgttaacagtgaga Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:COL5A2:NM:000393:6/54
0 chr2 191389040 191389119 1000540 0 - 1789; RIP_Alu_chr2_191_01 NA NA SINE Alu Y aattatgagtagacattggtaatccaaggagaggctaaattcaaggttggcaggatggtaaatgatgatgcatgttcagaagtctagagcagacagtatg
gaagagtcaagcagcacaggacatttccaagaaatctttgagaaaacagggcaggaagacagggaagacccagtgccaagggactacaacgttgataaaa
ataagaaatgggggctggacatggtagctcatgcctgtaatcccagcacttcgggaggtcaaggtgggtggctgacttgagctcaagagttcaagaccaa
cctgggcaatatggtgagatcccatctctataaaaaagaaaaacaggaatgaaaaatggaaaaacacatcagtcaagaagaagttAAAGAAGAGAGTTCC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGAGTTCCtcctt
gagtacctgtgaccttgggaaagacagagaaacccctggcagaagatgccagagaggtagctcatctttctcacagtgatattagggtaggtgaggaaga
ctgtttttcaatgatcacagatgagcgtaattatttgcaaacgccattgatgtgtgaaatgaaaaaagattattaaggcaaatgtattgactattttttt
taattccaggagagagacagcagcaggctaactagttgtctgttaagaacatccagagcaggaccagaatctgggccaggaactgagagacagattggga
caacggaacaaatctaccagggtatgctggccaacttagtcttctattatgatcaaggaaggatggcgcctgagaggtca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 195185884 195185980 1000541 0 - 13848; RIP_Alu_chr2_195_01 NA NA SINE Alu Yb8 aaaatgatgagacatataaagaaaaaaagaatgtatggtcaatatgtggggggggggggagggtggaaatgtcaatagaaactttccctaaagaagtata
gatattggacttccaagacaagtattttattttgttttgtttttgagacagggtcttgctatgttgcccaggctaatgttgaactcctgggatcaagcaa
tcctgctgtgacctcacgagtaggcgtgaacacaggcacatgtcaccatggccctgcttacaagaaaattattttaaatcaacagttataaatgcatcaa
agaaataaaggaaagtatgtctgaagatcaaaaggaaagtagaagtatgatgccccaccaaatagaacatataaaaatatagaagtcatAAAAACATCCA
AGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA
AACATCCAaatagaaatactgtagttgactcatctaataaataaaataaaatatttattagagaggctcattagcagatttgggctagtagaagaaagaa
tcagtgaacttgtggaaatcagaacagttgaaattatacactttgaacaacacaaaagaaaaagaaagagaaaaattaaatactgcctcagcaatctgta
gggtaccaacaagcataaaaacacacacatagggattagacaacttagggagaggctgaagtttttgaagtttttatttgcttcagtgcacttagaccag
ggttgtccaatcttggcttccctaagccacactagaagaataagaattgtcttgggtcacatgtaaaatacactaacactaacaatagctgatgagc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 202429910 202430214 1000542 0 + pAlu2-202685587; 10606; RIP_Alu_chr2_202_01 NA NA SINE Alu Yb8 aagaacaagtttcttgtggagccgtggtccagtctgcaaattgctcctatctccagttgccatggtttccaggagaacgtggctctcatcttttcctgcc
ctgcctgtacttctccctgtccactctgttctctattttccctcagcttcctaactgagaatgccagcagaagtttagagtcacagatggattgtaggaa
acaatttggatgatgccaatacaaagctactgtggtgggcatatgctgctcccccaaacttcagacatttgggtttcaggttggtccaggcaatcaacag
tgatccttaatacaaaatgtcttggtgagagcaataatcaagaaacttggccaaagtgcttccctgccagattgtgtgcttaatAAGATAACTGGGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAGATAACTGGGTTCCaataaaacagagaaaatatgttacattttaaaaaattttctgttgtttcaaaacaatgtgcagtttttctatataagaa
gaaaagtctccaggcccaacatccatagggctcatcatccattgtttttcttttaagttttcaatttaatccaaataagtcaaaaattttcaggtaccta
ctatctgccaggtgctgtgccgtgcgctggggctacacagatggagagggtgcattcttggatctctagtgtttgggtttggattcattcacccacactc
tttcaccagttctctttgttactggggtgctcatttgtgagccctgcttccatggcttggagagtttgtggctgtgggccaggctgagcttatggagcaa
aggga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PFTK2:NM:139158:10/14
0 chr2 209159977 209160289 1000543 0 - pAlu2-209415649; 13791; RIP_Alu_chr2_209_01 NA NA SINE Alu Yb9 atcttttcaaaataaaatattagatgcatacaataatatatttatgccagttataaataaagcacaataatgtagtttacatctagggacccagcaacca
aaccaaaaattggaacaccactaaaacatgcatcaatccatgagtttcttcactattccagatccctgctaaccccagaagtaatcatattagtgatgtt
attgataaatcatatgacttattagattatatatacacattatatattaggaatatttgatatatactatgtaacatattggcctgtatattacaaaaac
tgtatgtataaactattatatatgtataactaaatacttatatttcaaatatatcatgtttagttttgcttgcttttttgctttatAAAAATCAACAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATCAACAAACatgtttctaatgtttgtttttggtgttaaatacagctgtaattcaaacattttagtctgtgtttcataatatt
gcagttcatgaacacatgactttattcaccattcttttatcaatatttttgtttccactttaattataaaccaggctgttacggctattccttccttcct
tccttccttccttaattgccaagctcatttgatataatattatggctattcttacaatgcacaagaagtttctagaatgtacactcagaaatgaaattgc
tgagtcataggccatgtgactattcaaacttacatgattaatgccaacaacaaatttttacgcctatcaaaagcatataagcattttcattggctcacaa
cttctccatcact UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 214483462 214483756 1000544 0 - 12563; RIP_Alu_chr2_214_01 NA NA SINE Alu Yc1 ggcagagtgagactctgtctcaaacaaaacaaaacaaaaacttgtttctattgaaaatgactttagttttgaaaatcaaatatattacaggtgccagatt
gatggtaatcactttttttttaaagaaatgtactgaagtgtttttatgagagggggtggaacaggaggactcaatagttcttacatcactaagtaggaag
tggaaagtgtagaagcaagaagacttggttggcttctcattctggctctgcataaatgtccccacatgatcttggacagtttatttaatatttacattta
ccatctctgaaacttactgtctttatttggaaatatggataataaattctggttgatatacttttaatgattgttttgtagatctagtAAAAGAATTCTT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AATTCTTacaaaagcaaatttttaattatttccacctttcaaatttgggattattttgtaaaaattctcttgttatctctagttaagacttttgttttgt
tttgtttgctgaaatgagttgttcctctcctagaaaatcttcagtaaaaagtaatagatttatatgatctgaagagaagtcagaatataagttcttatgt
agaatagtttatcactatttccgtaactagtggaataaaataaattactatcgttatattgtagtctcattgacctgtgtctatctattcaatagaacta
tttgaattcataaaaaggctattagtcacaatgttctgttaccatagaatatgtatgtattaatttcatgcagcagaattacatacaaccaaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SPAG16:NM:024532:11/16
0 chr2 216801055 216801356 1000545 0 - 17889; RIP_Alu_chr2_216_01 NA NA SINE Alu Yc1 ataaggctattgtaaccaaaccagcatggtattggtatagaaacagacacatagaccaaagcaacagagtagagaatccagaaataaatccacatattta
cagctaaatgatttttgacaaaggcatcaagaacatacattgtggaaagaatactctcttcaataaacagtgctgagaaaattggatattttctcagtgc
agaaacatgaaacagtgcagaaaaatgaaaatggatcccaatctcttcccacatacaaaactcgagatgaattaaagacgtaaatgtaagacaccaaact
ataaaactactagacaagaaaaatacacaaattgggctcaacaaattaaaaagctatcttctgcattccatatcatctagtggttAGAAAGAAAGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAGAAAGAAAGAaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagcttctgcatagcaaaggaaacaacagagtgaagagatg
acttaataaatactcaaggtgatggataccctaaatatcctgacttgatcattctacactctatgcatgtaacaaaacaagtgtaccccataaatacata
aaatatcatatcaattttaaaaaccaacaactttgcatagggcatgacgcatcacctctgtgaactgatgagtccaagcatcttgccatgcatctgcttt
aagaacacatggcgctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctccctctccctctcccgtctc
cc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 223505612 223505919 1000546 0 + 238378; RIP_Alu_chr2_223_01 NA NA SINE Alu Yb8 gataccagaaataaacctgttcagaagaacatacttgaagccctgctaatggagtccattaagtagaagttaattgtttttctttctttctttttttgag
atgtagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcagctcactgcaacctctgtctcctgggttcacgcaattctcctgcctcagcc
tcctgagtagctgggattacaggtgtgcaccaccacgcccagctagttttcgtatttttagtagagtcggggtttcaccatgttggccaggctggtctcg
aactcctgacctcaagtgatgtgcccgcctcggcctcccgaagtgctgggattacagacatgagccactggacctggcctgtttttcttttAAAAGCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGCATGtatttagcagtacaaaaattagggcctaattttaatatgtgcttttaatttcagcataaccattaatgcttaattttgcaaag
ttttaaataatttgatagcaaattacttagagaatggccagtatttatatatgtattaaatgttactaatattattactcattgttttcccctctccacc
tttctttgttttgcagatcgtaaaaaggaccttgtaaaactacaggcaggggaatatgtttctcttgggaaagtagaggcagctttgaagaatcttccac
tagtagataacatttgtgcatatgcaaacaggtaagaacgtggaattcatactacttttacttaaaatatttgatgtccatagacatttcctacctgtat
ggaccttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ACSL3:NM:004457:14/17
0 chr2 226725818 226726050 1000547 0 - 570; RIP_Alu_chr2_226_01 NA NA SINE Alu Ya5a2 gagtacactcattaaagaaacaaatattcagatgtatatacatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatacacacaca
catgtaaaatagaacggaattttgggacaaaccaagaaatataataaatatgcacaaagagctaagagaaaatagacagatacatgtgtgtatgtgtgtg
taatctccctctgactttattaggaataaaatataatacttaaaacaaagaacacatagaagggataaacaccaggatggatacagctaaagaaaaagct
gggaattagacagctgaaaagtcacatggaaaaactccacaggaacagaaactgatgaagaaaaataaaataataagccaggctAGAAGATGGAGAAAGA
GACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTGCTTGGGAGG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGATGGAGAAAGAatcaacatatagtaatgggagtctcagaagacaaggaaaaaaacagaaaag
agaacatgtctttagaaataatgaatatacagtttaaaaatttcaaaaagattacataccttgcattaaaaaggctcttagagtatcaatttggagagaa
ttaaaaacctacatcttgacatattgcagcaatattttaaaacattggagggaaatatattattctaaaagtctctatagaggaagaataaatcatggca
aaataataatcagattgatgccaaatttttcagtaccaatgctggatataaaatagaaacatagaaatatttttaaattatgaagaaaaataaattctac
cacacttttatttcaagccaaattattatttaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr2 231033554 231033881 1000548 0 - Yb8JW659; 14218; Yb8AC1527; RIP_Alu_chr2_231_02 GTGGAAACAGTTAATGGGAAGTG AAGTGGGTTTTGAATGATCACG SINE Alu Yb8 accagtcgcacagaacaggaattaatttggattccatggttgtgtagctctgcctctgggcctaattgtaataaatgaagaattttcatttgtgtcccca
gtgaacctccttcactatcattaataactccccctctctgcaatttcactgctggggctagaccttcaccccacctccgtgtttttccttttgctcaact
ctgtcccttcctttgtgcctctcttggctctgttttgttttttacctttccctttacctactcgtctcattctttgatggttaatattttgctttttaaa
aaaaataaaaattataattgcagtataagacacatgaataaaagtgggttttgaatgatcacgaaggaagtaaatcactttgatcAAGAAACAGATTACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAGATTACCaataccccagacacctcctggtgacacttcccattaactgtttccactaacttgctc
aaagacaactaccattgaggtttccaacactaaggttaattttgcttgttgtgtaatttataaaaatggaataatctcttttctctccactctttctttc
tccctttacctctctctcaatatatatagatctcccaaaagaagccaaatcccccaaaattgtatggatattttactcaacatgcttgtgaaagtcatct
gtattcgttttgtataattattttcactactagatagtattccattatagaaataagccatgaattatttattcatttgtacaatttcaagcatttggct
tctatgaataatgctgccttgagcattc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 449 106 NA intron:SP100:NM:003113:8/25
0 chr3 636726 637017 1000549 0 + 238103; RIP_Alu_chr3_000_01 NA NA SINE Alu Yb3a2 agggaatctggcagcagactgccttagacttgagctgcaacgttcattctttcctgggtctccagcttgctggtctatcctgcagattttggacttacta
gcctccacaatcacataagccaatttcttaaaataaatctatttctctctctctctgtctctttctccatccattcatccattcatccgtctacacattt
tttattgtttatttttctctggagaatcttgacggatacaccatctgtttatcaatcattcttgaaacagaaaattctacctgtgtatgcaccttgactg
gaaagagtttttgccaagtctgtactgtacctagttaaggcatatttagaaacatggccgtgggaaaacaaaaaacagcaagattAAAACATGGAGATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGCGCCTGTAGTCCCAGTTACTCGGGAGGCTGAGGCAGAAGAATGGCCTG
AACCCGGGAGGCGGAACTTGCAGTGAGCCAAGATAGTGCCACTACACTCCGGCCTGGGTGAAAGAACAAGACTCGGTCTCAAAAAAAAAGAAAAAACATG
GAGATATattatatatcctaattctacaaggatgtttctggctttacttatgtgtgtattaaggtttttcttctcttcttccacactattttcttatagt
tgacatatggtaatatagtaagaaaaaatacacatatatttcttcttgcaatatatattcattgggatgtttaacactgagtgtcaacctgattggattg
aaggatgcaaagtattgatcctggggtgtgtctgtgagggtgttgccaaagagattaacatttgagtcagtgggctgggaaaggcagacccaccctcaat
gtgggtgggcacaatctaatcagctgccagtgtggccagaatataaagcaggcagaaaaacgtgaaaaggctagactggcttagcctcccat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 1581423 1581424 1000550 0 + 239286; RIP_Alu_chr3_001_01 NA NA SINE Alu Ya4 tgtgaactaggaaagtgtgacctccttttggaggtgaaacagatatacagattacatgactcgtaaaaggtctaatggtggatctggaactatctggctt
ctacttccttcttcattgtcatcctcatcatctatgcttcaggatttgggtatctgtagaaacttcaggtggatttttcctattttcttatgtgagctgt
gctgaagtttctacctttgcctatagcagagtcatttgaataacaccacacagcgctcctcctctaactacctttgattgaacaccattggtgctttgac
ccattgtacatgggggtcagcccaagttaattggcaattccaaaccaccattctctgttgagctaataggaacaaaaggatctAGAAATTAGTGCCATAA
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAATAA
AATAAAATAAAATAAAATAAAATAAAAGAAATTAGTGCCATAAaggcaacctggctgttttagaaatttctcccttggtaactgccttctcaccatattt
cattagctttaaatttgcagactatgaaagatgaagttttaccaactgaaaacacatctaggaaatttttccatgctcatgggtaggaagaatcaatatc
gtgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgcctttcttcacagaattggaaaaaactactttaa
agttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatacta
caaggctacagtaaccaaaacagcat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 2608042 2608347 1000551 0 - 15487; RIP_Alu_chr3_002_01 NA NA SINE Alu Ya5 acaaaaaattttaaaaaactagccaggtgtgttggcatgcacctgtagtcccagcatactagggaggctgagggagggggatgccttgagcccaggagtt
tgaggtttcagtgagctatgattgcactacttactccagcctggtctcacagaacgagaccctgcctcaaaaaataaaaataaataaaaaaataaaaacc
tttcaatgattgcttcttagtctcgactcaaataaagagcagactactacacctggcattcaacacttacttttctttacctcccttacatgagagacaa
gttgggatctcatttttcttcgtttaggcctttcaaaaattcacctcatattttttttcgcttagtttcagaaggctacaattttAAAAAGTCACAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCCGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGTCACAAATCtactagttcttcaaagggcagactacatcaaaagtatctaagcacttgacttgtatttctttaagggactttatcagct
tataatacaaacaattattcatatattcaaaaatttattgaacatctggacaatgtgatcatggagatgtagcaatgaactctacagacacattttctct
tcaaatggagctccagtctagatggtgagatgcacaagcgagttactacaaactgagatgaaagcaattagcaattataaattgtaagaaatattgtgat
ggtctaggcactgtttccaacttggaaaataacaaggatcctccacaaagggacctcctggagtgatgcattatttcgaatattgatgatgatttcacag
ttatat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:CNTN4:NM:175607:3/24
0 chr3 15269348 15269349 1000552 0 + 17005; RIP_Alu_chr3_015_01 NA NA SINE Alu Ya5 acactaatgagatttcactttggtaaatacttcatgctttcagttttagcctattaattttaggtggacaaatttaacaagttttctgttactttttaaa
aagaaaaaatccagaacataagaactatattatgaacacatgatttgaacctgttgtggtaaagatcttgtacaggatgcaaactaaaaacctaatccct
gccatcaaatttattagaagagacctatatatgaacaacttaaaggcactgatttctataatagagctctaaaaacatgccaccagtgtatgaataaggg
aaagattaattttggctggaccaatataaaaaattgtatttgaagaattgatactttaacttggaccttgaaggtaaagcttcaaAAAAGACAGGTTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGACAGGTTACTtatgtacccaatgtgtatatttttctttttaatcttcccaatagctgaataaagtatagatactattatttgtacttcttac
aattgaggaaataagcctaagagattaaaagattttgcccagggttcacaagccttcttccctgagccctgattgagctgctgtgtgtgtctaatggcac
ccacagtcacggccgtctagtcgagggagggacaagatctagacccattgtagagggaggaaaaacaatccaggccttttggaggttctaaataacagac
agaccagttgaattgttagagaggatgactcaagtttctaattcagcacatggacagatgctcatagcttcagtgaaaggtaagttttgacacattaaat
tgc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA exon:3UTR:CAPN7:NM_014296
0 chr3 23739078 23739391 1000553 0 + 239048; pAlu3-23613773; RIP_Alu_chr3_023_02 NA NA SINE Alu Y ccagcctgggagacagaatgagaccctgcctcaaaaaaaaaaaaaaaaaaaattaaagggtgaggtgctggggaagtctgcagcattgttttccaattgt
taatatgttccattaattttcccaaggtgttcaaaatgagtttctagatgctatgcctacatgcagtgtacaaattacagtgtttaggggaatgttgaca
tttgttatactagttgtgtgacacttctcagtgagtaaactcatctaatcatttgtaaatctcagaactgttgacttctgtattcagaaacaatttattt
attaactctgaaaaatgttcagttgttttcagagaagagttcagtcttatatgtaattattctggagaagagcaacatttctttAAAATGTTTGATACAA
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG
TGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGCCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATGTTTGATACAAatatcaaatgattctccaaatatatgttggagaatataatttccctttgaaaatgttttctgaagactgg
aaaattaacttgcataatgtctccatccaacaagtcattaatttacagccttccaaacacgtttgtctgaatcttaaaagtaactggttaactttcattt
ttcctctcataactgtgacaaaatccctactcgtggctaccaatggctggaggatgcacttcatacatttctcagagtctacatgtatttagatctacac
agaaaaattgaaagatcccaaattttatttccgtgtaataccacaaagcttcttttgggtgaaacagtgctttttctggtggtcctcttgtaagtgcaaa
tttgcctgagagac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 35026676 35026989 1000554 0 - 239280; pAlu3-34898171; RIP_Alu_chr3_035_01 NA NA SINE Alu Yb8 acagaatacaaattagcttgatggggactctttatgccctttgactggtgcagagggcattcagtgaaggtgacttgaaacttgaaggccttactgtttt
ccagaagaaggttgataaacagctcatggagcccgaaggtgttagtgtaattcacctacaactcttgtcagggcaggtacctcagaggaacagcataatc
aggggagtacctactacagagttcagcagaagaggagagagaaatagattctctgtgacaaatatattataaattgaaattctgtatgagagcatttgaa
gttaaagcttaagtactattttttaaattgctcgaaaaatatctaaatcctgtacttgttaatcttctttgtgtatttagggaaatAAAGAATTTAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAATTTAAATAtaccttctttaaatacctcgaaaaacatcttcccataggctgaaaattgcctaatatattttttgatttttt
aaaaaaaaattattctcaaaaatatctattgagggctttccgtgtatcagacactcttctggatgctgagaagacttcagaatacaatgcatccaaagac
catggcttcatggagtttagattgtagaatagcttgacaagcagtaaacataacaaatgaataaataaattatatagtatgttagaagatagtaattact
atgggaaaacaaatatagagaaaagttaggaaaatccaaagtttgggatgatgattgaaatttaaacaggataaaaagtaaatttgataattgatttgaa
gggtgcaaggagat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 43006111 43006424 1000555 0 - 315; pAlu3-42850242; RIP_Alu_chr3_043_01 NA NA SINE Alu Ya5 acccaggctggaatgcagtgacatgatcatagctcactgcaccctcgacctcctgggcccaagcaatcctcccacctcagcctcttaagtagctgggact
ataggcacacacctttttaaacttttgtagagatagggtctctctctacataagtttatgttgcccaacatagacaaaagtctatgttgcccaggctggt
cttgaactcctgaaccaagggatcctccctcctcagcctcccaaagtgctggaattacaagcatgagccaccacacctggccctgcacagggactcttga
ccatgcagacctcccagcaggtgcacctgtctatgctgtgagtctaacgctgggagcaccacacagagactcctccaaagagacccAAAAGAAAGCAGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGCAGGTaggattttccatgataaacaggtattgctcttacaatttacaaaagacagagataaaacaatagagttgcaa
aaccctaacaggcccaaaaggaaaattgaggaaaacattcccctataattaggtcaggaaaagaagcagtgacaatattcaaaagaacaagtttctaaga
atcctacctcaactctacattcaccaaaaagaaagatcaacggcattctgaaccctaaaagggaagtccagacagacagaatgggacacctagaaggaag
agattgcacagacctggagacagaaagcaaatgtgaggacccaccccatccattaatgcaccttttcccaggctctgtaggaaatgtgttccttgctcct
ccctgcaaccctct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LOC729085:NM:001129908:1/5
0 chr3 67772615 67772616 1000556 0 + 21484; RIP_Alu_chr3_067_01 NA NA SINE Alu Ya5 taatagttcctggcatgtttttaaagaaagctctgtcaaggctttcttctgtgtaatttattgtaatgtacattcgaaaaaaatgtatatgtatcagtaa
tttaccaagcccatactttcatggacactattacttatggaggggctcaaatgtggatttaaatatttttaatagtgaatagatttagaagaaaaatgtg
aagtcaatgatattgatacttaaacatcacaaaaagccctgaagaggtattaccctagatgaggcaccgaagtgttaaaccagttgtccgaggcacaaag
ctagtaagtggcttacatgtcacattagccatggaagagccttgcagcagatgctctcagtgctccatccgcatggcctcagatcgcgccAAAAATGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATGGTGctgtgcactcttactcccaagagcagccccggcaggtctttgtcttaagatgctgaagacaacatgcccttaaagaacctt
gaagagggtatataaatacttcaactctcttgcccctaactacaactctgaggtgtaacctacacagtttccatagctgtcctgtggaattaagcaaagt
caccctctttgggattcagtttaataacacacccttctcagcctccttcccttcaacttctctaaacccctttgagtttttcctgagaatgcctccccga
aaagccactttcacatgaatccttttctcaggatgtgtgaccagggaacaataagaaaagtcttggggttactatggtccaaggttccccaaacaagaat
cactcatac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SUCLG2:NM:003848:1/11
0 chr3 68953182 68953456 1000557 0 - 17560; pAlu3-68694102; RIP_Alu_chr3_068_02 NA NA SINE Alu Ye5 ttaacatgaggctcaataggattgcaaaattaataccggtagagattttctacaggcggtttccattgcagaattaccggagaagcatttgcaaatacct
ttttaagtgatggatttggcagcacagtctttaaatagaagacagagagctgctagttacttatcatggtttaaatatgtcaatattttctcatttttct
ttgaataaaaagtaacataagggtaaaacacctgaaagaagtatagtacttgggaatgcacccttcaggcttcactctttatggcaaggttgaaaatcca
gggtagcagtggtgtttattgccaaggtagtgccttgaagaactcatataattcacaaagcgtatcattcaggacttgttttctcttAAAAAAAAAAAAA
GCACACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGTGGAGCCTGCAGTGAGCC
GAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAagcagggaggtt
gtctacatagtgtataaatctacagccatcatatcttattgttgttttgatgctgtgtttatatcttaggattatctctaatagctgtgagtcctcactg
aaattaacagcgtggtatattttggcagtggttcaaaagttattgatttttggttatgtttttcagcatcactgaatgtatggaagacattattatagaa
tttgtaaaagattttaacctgggagtattggctgttaaaacacacagcacattagtgactaaaatgatttacagaatgcatttccatactactaagtccg
tgggtatttgtacactacatcatttggtaccaccttgtggtacagcataaacacagtttgtaattcctttggttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FAM19A4:NM:001005527:3/7
0 chr3 88692358 88692359 1000558 0 + 22109; RIP_Alu_chr3_088_01 NA NA SINE Alu Yb8 acagctaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcgtaagacagggatgccctctctcaccactcctattcaacatag
tgttggaagcatttttttctttgtcgtgatttacttggtggatcagaataacttcattcttgtcagggaacaaaaataatggtcactcttagagttgaca
aagatgtacatgtacatgtttgaaggaatggtgtgatgctaagaagtttgccgacagataagttttagtgtgatatggaacacctcaaacctcatagtct
caagaattaattatctcatgagctggactcagctagaaggccagtaggtcagtaggatatagaggttccagttgcagttaaaaggGCTCACTTTTGGAGC
CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGCTCACTTTTGGAGCtgtgtcac
catgtgtcatctaattcaacagaaatttcccaggctcaagacatcttacctaggaaactactttttttagcttgtgtcccctgagggtcgagtgtattac
actggcaaatctgtagcttgaattttactcctggtcgtagattcctgggtttgcagaatctctgctcagcacaacctttgttcaatagagatgctaatga
attttcccaagtcaggagaatttataagcataacaaagacactccttggaaatagccaaaatatctatgtaaacaaatagaacatttttcatgggtctgg
agttcctgcataaaaggacattttgacttgagatttaatggttactatggcattagttgtataggcacaagctatta Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 103766478 103766802 1000559 0 - pAlu3-103564923; 6153; RIP_Alu_chr3_103_01 NA NA SINE Alu Yb8 gaatttgagatggccattagaatccctgaggggagattggatgaaactgtctataaaaagtatgagtagatagagaaaagcagaggacaagaagaggaag
tagagccaacaaaagcctacagaagaaaagccaggaagtagcagggaaaatcagagacttgaaggttttgagaaaccccacatatgcacatgtaattttc
tgcgagagaagggagcagtgatatgggctggactccctccctcccactgccaaatttatgtgttgaaatcctaacccctagtatctcacaatgtgattgt
atttggagatacggtgtttaaagaggtaactgagttaaaataagattgttagagagggctctaattcaatatcactggcatctttatAAGAAGAGGAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGGAAATtagttctggaaggagttgtactgcacatctagtgccccaattatctggcttctttcagcttc
tccctgggagttgcacaacatatccagctgcccaacttttctgcctgctacccaagggactggcttctaacttgactatccctgagagccactgggatct
ggcatctgctaggcccctgggagctgcagagagcaaaaacacagtttgaaagagtgtgcagaatgaacgagagtacaggcattgctatagctcttctccc
cagctcaaaggggagtaagtgggtgataaactccagctttcagcttctctctgaggagagaagggattggaccagccatctaatgccccaatttttttac
ttgctactagatggactggcttctg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 113950092 113950402 1000560 0 - pAlu3-113748530; 16468; RIP_Alu_chr3_113_01 NA NA SINE Alu Yb3a2 tttaagatgattctcacttacaagaacactgagtggtaagttgagaaaactatgattctcatgttcaagactattttccaattgttcaccctatatttcc
tgttcaatgcccctttacccactttctctgccccaacctgttttcccagataattctccccatctagtaactcccctttccttttgctcattatccccaa
cttttagtactttccagagtgccagctctggaccctttatccttcaggctcaaagccctgtactattttattttctctggtgcaattatcctccataact
gaaatccagagctcaaatcactaacaactaaaagctaacttctaaggatgcttagtcatcatacacttcctagaagggaatAAGAAATATTTACCTTCCC
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAATATTTACCTTCCCtcctgggtgtggggagtgatgggaaccaagtgggagcagagaaagttccctccctcctagaatgggttta
attactccttcccttgcaaagaagcaaagagaaacagaaaacaggtagtgatgtcaccatatcaaaactggttaaaaactcatatgctgttacctttata
ttaccatatgctgtgtcttgtatgttcagaataatttcttataattaagggaagaaaattatgatgcccttagagcttcatgtgtgttggcttctgttcg
tcctctgtttgatcatgtcccagtgggctggtggaaaggatctggtgaaagtgatttctttataaatttctcttttattattacattatctgggccctgg
tcaccaaatct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 115336724 115337037 1000561 0 - 981; RIP_Alu_chr3_115_01 NA NA SINE Alu Yb8 accaacatggtgaaaccccatctctacttaaaaaaatacaaaaattagccgggcatggtggcatgcacctataatcccagctactcaggaggctgaggca
caagaatcactctaacccaggaagcaaaggttgcagtgagcagagatttcaccactacactccagcctgggcgacagagggaaactccatctcaaaaaca
aacaaacaacaacaaaaaaaaacaaacaaaaaaacacaccataatctctgttgtaaataggcattcagataaaatgaaatatgcttattttaattattag
aaaatgccatcaaactaaaaaccaaaaaatgttaaatatgtattctcttaacttgacgtcatgttaagtgaaataagccagacatagtAAGACAAATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGC
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGACAAATATCacatgttctcaatcacatatggaagctaaaaaagtggttatcgtgaaaatagagagtaggttcatggttaccag
aggctaggaaggagatgggggagggggcgagaaagagaggtggattcaggggtacaaacatacaattaaatagaaggaacaagttctagtgtctaatagc
acagtagggtgactacgcttaacaacagtttttatatatttcagaatacctagaagaaaagatttgaaatgctcccaacacaaagaaatgataattgttt
gaagtgatgactagcctgatttgatcattacacattgtatgcatgtatcaaaatattgcatttgccccacaaatatgtaaaattattatatatgaatttt
taaaatcttcaaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DRD3:NM:000796:5/7
0 chr3 117757975 117758285 1000562 0 + 30973; RIP_Alu_chr3_117_01 GTTGTGCCCCATTTCAACTACTG GCGTCTAACATCCTTCCTAGATTG SINE Alu Ye5 atgtatatggtatataagaaacaaatgcatatcatgtttagacttaggtcccatccccaagaaatctcattatatatatgcaaatattccaaaaatttta
caaaaagatctgaattctgaaacacatctggtcctaagcattgcagataagaaatactcaacctatatatatttgggtgaaaaagtttgatgggtttacc
catttatgtttgttgtgccccatttcaactactgtttgtcctagaaaatgagatgaacaataaaatttcagatttaggttttataactttttaaatatac
acttaaatgcacgcgcgcgcacacacacacacacacacagagtagctaataaatggctcctacttcaccatgttcgaattcctttataAAAAAATCTTCA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATCTTCAgaagtatagtatgggcctttcatgaagggtatacctaaaaggtacaatctaggaaggatgttagacgctgtcctgat
taatacttaggaaacctgaactaacttttctgtagaataaaaagataaaaagaggctggccttcatctgaaagagggttataaataaaatccatatcatc
attttacttatgacaaaaatcacaatttttttctcctttaaaatggcataccttattttgtcatttttaaaaataaataaatacagacctgggtagttaa
aattgccaagggaatggaagtgggtagcgatgtgcatgcagtgtgatggcagaccagagctgtaggagctcttcacactgcttcagtgaggttgctaagg
gatatgagccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr3 126051364 126051365 1000563 0 + 2237; pAlu3-125850277; RIP_Alu_chr3_126_02 NA NA SINE Alu Yb8 ttatgccacatcacctgtgtttgtttctatttctctcgccatttaccagactagtatttatttggggggcatatttgatgttttgggacatcacaggcac
aactcattatcattggaaactacatatataaatacaggaagacagattccaaattttagctctatcgaaaaaagaaaacaagaagaaagagaaaagacag
cactagatttgtctaccagctacaataagatagccaacaggcagagaaaaggggaattaattcagaggaaaagaacaaagagaaaagctagtgtctggca
ggtgtggccttttctgtctcaccctatagagttcaaagagaggctcaagtcagggcaataactggaagacccaggccacgataatgaTAGAAATTATGAA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTTAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAATAGAAATTATGAAaaacaaatcacttagaaccaactttaaggctcaactcataccagatcattctatctgccttgggcttattaacct
ttcaggagtgccaagagatgccctatttatcctgcagtagaactgtctacacatacttgaaatttggatagattctttgtgtgtgtagaggcacaacagc
aaaggtggcctcactcctgcccagcgggtctacacctgacttgccggcagccacatctcagagcaaccagtctttcatctcaagctgacaactagcaagc
tgaagccttctttaacttgcagggaactcaatcctctatgcttcctctcctcctcccaccgtgacaacaaggcatatttcactaactagatcacgaagaa
tccaatgatcaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ITGB5:NM:002213:3/15
0 chr3 145187975 145188283 1000564 0 + 4020; RIP_Alu_chr3_145_01 NA NA SINE Alu Ye5 gtgtcagttgaaaatattgttatttgaaatatatctaacctacgggacatcatagcttagtcttgcctaccttagacatactcagaacacttacattagt
ctaaagttgggggaaattgtgtaaaacaaagcctatttataataaactgttgaatataattatattcatgtaatatattgaattctgtactgaaagtgaa
aaacagaatggttgtatgggttcttgaaatatggtttgtactttatttttaaccattttgatgatccctggcactgcagctctgagtttggtttgacatt
ctgattattacatctcacccaaaactttgctctccatttacttttgagttcttcatgggatagatgagtagtgtctgaagtgttttGAAAATTAAATGCC
GGCCGGGTGCGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AAAATTAAAGAAAATTAAATGCCatagaagttgtaaagcatcaagaacaaagcctgtaggtctagaaccaattcagttagcaaaaccaaagggttgttgc
tccatggtgagggttttatattttttaatcccctctttccccctgataaaagtaatatgagtatcttttgacaaacaaaggctgaaaatttacggcacct
ggggaaaagtttatgtgacagccatatattaggttgacatttactttttgcatgatcttggcatgatcctattaaatacttgatttttcccactcccttt
ttcagattttatacttaccagaccacttttctgattatttcttgacttgccatgtagatcctcctacaggaagtgaacaccctgctggagtattctactc
tctatttac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:C3orf58:NM:173552:2/3
0 chr3 149689178 149689484 1000565 0 - 12662; RIP_Alu_chr3_149_01 NA NA SINE Alu Yc1 gtgtgtatagaagggaagttaatcagaggaccatttaaagccattttctggctcaggttgtagaataagctattttgtttttattggagcagagtaggac
acaaataagatagctgtacttaaatgagtcttcaatcagagcaaaaaagcccatgtatatttgtttttccatttttcatctacttttgccaattttgagc
aaagttgcaaaacacactaacaagtgttcgggagtatcatcaatctcattaactgtggtgaaagtataaattggtagatgattttaaagaaacctgtcta
tctatctgtatctatctatctatctatctatctatctatctatctatctatcatctatctatccatctacctacctatctatcatctatAAGAACTTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAACTTGAGaataatatctattccatttggcccagtaattccaacttttagaaatttatactaagaaaattagatagagatttatttataa
agattttccatgcattgctattcttaatcatttattttaaaaattggcaaatataacacaaatgatgaaaactacataaaacatacaacaattataaagc
aagcacatatatgaatatcacataaatcaagacagaatggggccaacacacaaaaaacctctttcctacttgccccaaaggtaaccactatactgaattt
tatttcaacaccaagcatgcatccttaaataatatgggttttcctggtttttaaatcttatatgaatggaataattctgcatatatgtgtttgtgtcttg
cttcttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 150049493 150049800 1000566 0 - pAlu3-149848310; Yb8AC1126; 238424; RIP_Alu_chr3_150_01 CTTCCTTTGACGGTAGTGGC CCCATTTGCAAACTGCTTTT SINE Alu Yb8 tgcaagacacatgccctggattggcacctttgtgtagtgcgctctgctttccattttgttaatctgtggagagggacaagatacttgttggctggatatt
cttctggcttcccatttttcactttgaagttgtattattattattattaacagtgtcatgtagacatctttgcaggggaggtgcaccaaagattgggagc
ttcttcctgcccaataagtgcagccatatggctaggtttgagagccttttctcccagttttaatttctctgacaataacaaggtcacagaattcaatatt
tcattgtcctttagaattttggaaatctaaattcattgtttttcttttaagtctcaaaacttcctttgacggtagtggcaactttatattAAAGAGGTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT
GAACCCGGGAAGCGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAGAGGTCTacactgagagactggacagtttatgaggccattagaagctcagagtgcactttgtattcttgctttaaacaatatagtatga
gtaaaagcagtttgcaaatgggaaagcattatatgtgtaagatattcttgttattccatctactttctactgctctgctaaacatatcttagagaaacat
tgtagtcttctctgcaatccatataatacttttcctgttctttacttcattggtcttttgcattcttatctctgcctttctttcttctgaaggttgtctc
atgatatgagcaattattaggcaagctacatgtaaaatcattcagaaatgaaggcacatacatttttatcatgactcagatatcaaaggactgctgttta
taggatgt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 463 145 NA intron:CPB1:NM:001871:9/11
0 chr3 150327077 150327390 1000567 0 + pAlu3-150125897; 9502; Ya5ACA1086; RIP_Alu_chr3_150_02 NA NA SINE Alu Ya4 cttaaaggcaaggataccctctaaatgcagcaagccaggaaaactacagaagtggcctgcctgtgccactttggcaaagaaaactagggaagagagggga
gagaagaggaggctagggaagagagaaggagggccatttggagctgtcgtttccacctccttacaccccaccaactgctctatctgaaggctgagggctg
gacacctcaatgctggcacctgatttccccaagtgccttgggcttctctgacagtagtgatggtgttgtttagagatgcagaaaccacttcatccattgc
tctgagagagtcacgttctattcttcaggaagcatgcttacaacaccaacctaatttttaaaaaatctttcagaggccccttttttAAGATGCAAAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGATGCAAAAATAatggagccacctatgcaaatagtggtcagctaccttttgggaattcctatacactttccttgtttgtttttt
gtgacttttccagaaagaactttgaggaaataaagaaataaaaaatgagaagtaaatggtattttgtgagtgactttctcaacacattctctaagaccaa
tgcagatatcccgaggtacctcacagatgggataggaaatcagtgctccagagatccagaatccttcttttctaggctggttgagtagagctctttgtcc
atgttgttgcagaaccatttttgtagccatccccagtggtgttgtcacctagaagaaacttgggggagctttttacccacatagcaccctcaatctcccc
agcaaatacagctt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 164946870 164947167 1000568 0 - 238904; RIP_Alu_chr3_164_01 NA NA SINE Alu Yc2 actctgaaagataaatataagaatatatccgtgacattgattgaactttttaacagaacagaaaaattaataaccataaaataatgtattggtaatttga
caaattatagagctatttgtttattgaaacaaaaaaggaacaaaatcaaaacaaggacaagctacatcagtgaagaataaatgatattgattctttcaat
tcatgagtatgggatgtttttccatgtatttgtatcatctctgatttctttgaaaagtattttgtagttcttctaggagagatctttcacctccttggtt
agctgtattcctaggcatttaatttttttgtggctgtcataaaagggataatgttcttaatttgactctcagcctgaatgtcactgatgtatAAAAATGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATGCtactgatttttgtacaataattttgtattctgacaccttgctaaaaggtttacacagatgttgttctagaaccaagaaactattaaattagaag
tagaaaaaaattatgcatttgtttagaaattaataaaaacacttctaattaactcatgaatataagaaaaaatttataatttttaattatttattttaat
ttttgactcttgttatgaatatacaccagtatatatttattgtatacatgtgatattttgataaaaccatacaatgcataatgattaatcagggtaattg
tgctattcatcacctcaagcatttatcatttctttatgttagtgacataatttggatatttgtccccactcaaatctcatgttgaaatgtaatctcca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 167872918 167872919 1000569 0 + 21709; RIP_Alu_chr3_167_01 NA NA SINE Alu Ye2 aatttgtgtatttttgatggagtcggggtttaaccatgttggccaaactggtcccaaactcctgatctcaggtggtctgcctgcctcggcctcccaaagt
gctgggattacagttgtgagccaccatagaggtggaggcaggagaatcacttgaacctgggaggcagaggttgcactgagctgagatcatgccactgcac
tccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaatgctgactctcacatcactggtgatcttcctttgctaaaccccaggtct
aatgtgcttaggtattcatacaaacctactagtcatcaaataaatatggaaaacatcccacataaaatatcccttttatggagttttataacAGAATCAG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATCAGaatcctctaaacaaacctgtggtaaagaaatctgcttaactttgtttcacactctctctcaaagttattttaccctagcatt
tttttgttttctaaataatagctcataaaactatgattctatagaacaaattctaagaaataccgcattcactagtaaatcgagaggtttaatttagggg
aaagaaaaatttggaacagacaatggaataatgaagactatagaagagtagtgtgatcagctaaaaaaaactcacacattcaactcttccatccttttca
tttctttgcaagtctcaccctgctgctgcccagcagatgtcaaaatgagcaggaaaaccacattgctatacagagattccttaatggcaagctcttgctt
ccctaagact Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 175893432 175893433 1000570 0 + 239031; RIP_Alu_chr3_175_01 NA NA SINE Alu Yb8 cctcatgctgctgttctggaagctgtattttaagtcttttggcttagggccactatggatatatttctgagatactaagggtaccaccaaaaaagaatgt
tcggaaacctctatactaggacaaattactaagcccattcatgtttcagaatttacatctttaaaatagatgaagtatatcctgacacataagaaaccaa
taacaaacttggctatgtgttgtttatatttcatatgcttgttaggaggaagtatatatgtaaaaatgctgtgtaaaatactgcaatcattattgtctct
tttaaacaagttttcatattttacttcattttgttcctgaactcaacttgataataaaattattggtataaaaggttctatttgtaAGAAAGGTATGAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAGAAAGGTATGAGTgagattcaacatacagaatataaataccaaccagtaaaataataaatgataattaattcctctgtatcactttaagtc
tgtgatcaaagtagaagtctaagttcatgatatctcttgtggattaagacccagtaggcactgttcttccagtactgctcttagggccatcaggagttaa
catccaatcactattcaccaggatgttcttggctttaattattattgcttaactttggttcatttagaactgaatgctaaagtccatgcagcttgagtgt
atgaaaacctgttttatgacatggagagtttactgcattcacttttcttaattcatgtcaaactttcaaatgttttacttggtagaagtggaccataggg
tgttgcat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 182444597 182444910 1000571 0 + 32944; RIP_Alu_chr3_182_01 GAGATGGACTGGGAAGAAAGCAGG GCTGCCACATCAGCTGTCTGTGG SINE Alu Y tcccttcagcaacctgtttagcctccctgtgcctcagtttcctcatctgtaaactgcaaatgttggtgctcatcttatgtccctacactgggttatagtg
cgatttgaatgaaagaactttgtgtaccacgtagaacaacacagttctcactatgattaggattaatcttaatattattgtaggtagttaagttagaaca
atagataaagaagttaaactttacctaagagtagaactggccttagttacctgactgaatacatttcaaaagttttatcaccccttattttaaataaatt
gaatagtacagagagatggactgggaagaaagcaggacctagaggtgacagagtcaaaccttattgcctgacccatgtagacacttAAGACATGCAGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGACATGCAGCTTacatgaatgagccatagagatatctaaattatttgaaatttctgcattacactttttaatttctttctaagt
ttgatacaagaagaatatatttgttttaaaatgaagagcatcattatttaaaagaaaatacaacaaccaaaataaaccatagataatcagagtgccacag
acagctgatgtggcagcagataataggggaggaaacctggggagggatagaaagagctcaaattcattgggcgcttatgttctagacactgtgataagtg
ctttctacacctggttgtatttagtcctcttgacaagtctaaagggtagatgctggtagtatcccattttatagattaggaaactaggacataagagaga
ccaagtgatttccc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr3 183477553 183477554 1000572 0 + 239223; RIP_Alu_chr3_183_01 NA NA SINE Alu Yb8 acaggccctgatcccgaggagcactgagtgctgtccagctgctagaactggccagtgctgcatcttcattgcccttcctctggttcagttccctgtccag
aagtccagggagtgacagctgtgtttgggcaccgcgtagcaggctccagaggggcctgcactgcaaaacctccctgccagggctcagtggggaaggcact
tcttatcacagcagatttccatccacctgtttccttggccttcctctctcagcagagtatactatacagctttttaattttgtgggtgagaaggttcttg
ggacctttttcttattcttccctaagtttctcatcattttggatcagcatctccctactccttactgggattctcctatttcatccatgAAAGAAAGGCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAGAAAGGCAccacagaacaatatttgtattttcagagggctgagtttaattttgaggcaaaaaaattatacagtcttcaaaagatgtctat
gattatgaaattctcaccatgttgtaactcagatttttcttaaaattaaaaagtatacatttaaaatgttcatgtttttccagcaatcaatcttagcatc
actaaagataacctgatatgatatgcctcctgggaaatgcaatacatacattgattcacctaatttttttccttccatcatggtattacttatgtactgt
aaaagtcaaagtagttcaatgagttttgaaaaatctatgcacccatactactgtccccaaatcaagatacagaacttttccatcacctcaaaaattctcc
tgtgccc Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr3 189787544 189787858 1000573 0 + 511; pAlu3-189706776; RIP_Alu_chr3_189_01 NA NA SINE Alu Yb8 atatgtgacagttccctgggagtttctcccctcctcgtaggtatttttagcaaaatagtccttaaacattgttttttttttttttaagttggagtctcgc
tctgtcgccaggctggagtgcagtggcccgatcttggctcactgcaacctccacctcctgggttccagcaattctcctgcctcagcctcccgagtagctg
ggactacaggcacgcaccatcaggcccagctaatttttgtattttttagtagagacgggggtttccaccatattggccaggctggtcttgaacacctgac
ctcgtgatcctcccacctctgcctcccaaagtgttgggattacagacgtgagccaccgcgcttgccccttaagtgttgttttAAAGAAAGTTGGCGCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGTTGGCGCTCTactgaagactggagcccaagaagacatttatagggattgtttattttcatgttgttactacactcca
tggtctgcaaaaccagagtgccagatgttaaattctatcagcataatgcatctttaattaaatattatatacgccatacaattaataatgtggtctgttt
ccaaaactttattaagaaattaccataattttgtataataggctaataaaaaggcactgtactttgaaacagcctttcgtaaagtggttatatgatttgt
atctgttgaatttggaatttagattaagagattgtgggccagaattatctgatgcaatgtactcaggactttaaataagttgcgaatcttgtagggtcta
ctattatttggcttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LPP:NM:005578:5/11
0 chr3 193338792 193339117 1000574 0 + pAlu3-193258024; 22416; RIP_Alu_chr3_193_01 NA NA SINE Alu Yb8 gtatcttgggggacaatccaacctccaggtcttggttgacttacactagtcaacatatctcaagtctctggccatggtcagtcactgaagtgtggacaga
tgatctaaatcaggccaacgaaatgtaagatgtcgtctgggggattctaatagagaatagatgatataagcatgcaggttctgaaactactaaaggaaat
tctgcctctaagggagaagttatacatggaggtggacagagctgagagaactacaaagtaagcctcgatggtgatgctgtgtacctagatattcgagatg
aagcgccagtttggtttggggattctgtctgagcaaccagaagcatcctagcagatacagatgttcaaacaaatacaaaggctgtattGAAAACCTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACCTTTGAgtaacttttcgtttttattgatctcaactcagtttttcttccacctccttttctgaacattc
ttcccaaccaagccctgttttccaagtatccatctttcattcaaatgatttcctctacttgagaggcctttgtcgtccccctttatcactcagcaaatat
ctgttctttttcaatcgctgtcttgcctctaatccctgatgatgcctttgttgcctcctcagtggtatataaaatcttttttgcatttatcatagcacat
acttttaggtattgcattatttatttatgtgtctgcctttgttgttgttgttttgagattgcaattcagtgtatgatgcctaaactcaactgagcctcta
gttggtatgttatgaataaaagaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 193545889 193546185 1000575 0 + pAlu3-193465121; 13748; RIP_Alu_chr3_193_02 NA NA SINE Alu Yc1 ggcagaaacatcttccaagaaatctttgcatgttttgaagcttttagatttgcatcctctataaacctttcatcaaaaactatgttgccaaaatcaatac
tatggcctactaggtttattcattaattcatcacatatattccagacattgtgccaggcacttgcaatacagtggtagaaaggacagagatggtacctgc
catcatagtagttaaagtctaaaatagataaaagtaaccacatgtgtaatatgtatccatctttacagaccaggaaactgatactcaaagatactgtttt
cccaaggttataaagtcagctagtgaaaaagctaagctgtgaacctagattctggtggctacaaagctgtaaaatattgttgctcttAAGATATAACATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
ATATAACATAaaattctaatgataacaattcaagtagttgtgaagaaagtaggaaaaacagactataataagaaaatgtgaaaaccttacaaggaatgtt
ttagccaagtagaaccatcctgctcaaaaggtaaaaaatctttagtttttcttagataaaattacacacaggcaacacaagcacacttatttgagttgat
ttagatatgctcaaagctttgcacgttgttatcattaatacctaaataagaaaatatgactgcctaattccaaaaatattaagtggatctatagaaataa
acataatgtggaaagattttttttttttagaaattagggataaaaaaggacttgaaaaataaaatgattattttgtccttactattctctacttcaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FGF12:NM:004113:3/6
0 chr4 9561408 9561638 1000576 0 + 2013; RIP_Alu_chr4_009_01 NA NA SINE Alu Yc1 ggaaataataatgagatgaacttccaaggctacaacactcaccacacaaaaagtggttttgagaattggatgtgagagaagcacccacatagagcccccc
catgggtcatctttcaagaaatgctccttcccctattcctaaaacattttctatttttcaaagggtttggatgtcctctgccttgcttggttctcaagca
atcttatgggaaaaaatgctcaatatcactaatcatcagagaaatggaaatcaaaaccgcaatgagatatcatctcacccctgtcaaaatggctattatt
aaatgacagatgctggcaaggatgcagagaaaaaggaaaacttaaacactgttcatgggaacgtaaactagtatagctgtgAAAGAAAACAGTATGGAGA
GATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCTCAGCTACTC
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACGCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACAGTATGGAGAtttctcaaaaaactaaaaatacaattaccattcaatccagcaatctcacc
tctgggtactactcaaaggaaaagaaattcatacgtcaaagggatacctgtactcacatgtttattgcagtactattcacaatagtaaagatatggaatc
aacctaagtgtccatcaatggatgaataaagaaactttggtatatatacatcatggaatactatttagccattaaaaagaatgaaatcatgtcatttaca
gcaacgtggatggaattggggggcattaactaaagtgagataagccaggcacaaaaagacaaatattgcatgttctctctcacttatatgtggaagctaa
aaaatttgatcatatggatgtggagagtgta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SLC2A9:NM:001001290:6/13
0 chr4 9565933 9566237 1000577 0 + Yi6AH16; 10548; RIP_Alu_chr4_009_02 AAGAATCAGGGAGAGGAGAC GTTAGAGCAGGAGTGAAAGC SINE Alu Yi6 atggtcaggcagttgttaaactgtctctctaaaataatagttggtcacagctggcaattattgggaaaggcagtcagtctcccaatagaaaaaaacctaa
aactggtgatcataagcttcccgacaagatctcaggagttgggcgagtgggctcaagcatatgcacgaagaggcaaaatggcagagtttacctggtatat
ggccttcctctgggaacttttgactggtgagggaaaaacgcctcaagtcagcatgtgcacaacgtcagtaaacacacggcgtgtgcggcccctcctaagt
gctggcaggccactgtgcatgcaaacagcccaatccaaggggaagaatcagggagaggagacgcaaccccctggaagcataacatatAAAACTCCAAGTC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAACTCCAAGTCaaagttcaaaccgtgcacttgatctctcaagtcgctcccttggtgctctccaagtgtactttacttcctttcattcctgctg
taacgctttttaataagctttcactcctgctctaactcttgcctcagtctctccctctgccttatgcccctcgtcaaattttttcttctgaggaggcaag
aattgaggttgctgcagacctgtatggatttgctgccgcggacacctctgtctctcaaagattccagatttgggtcagtattaaccttttgagccccact
ggacattctctagggattcttattcagaaagtctgaggtagggctcaagcatctggatttttttttttttttttttttttttttgagatggagtttcact
cttgt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 494 176 NA intron:SLC2A9:NM:001001290:6/13
0 chr4 16811864 16812164 1000578 0 - 689; RIP_Alu_chr4_016_01 NA NA SINE Alu Yb3a2 tcacctattctttctatattgggaaattcaggaatattaattctacaaagttcattatcattagtgagacgtttagaggctatctcataccgcttattct
ttctatattgggaaaatcaggaatattaattctacaaacgtcattatcacttgagtgggaaaaaggtgtaaagtgacaacaacctatgaatattgttgca
aacttaataacacctcaaaattcagcagaagcacagttgttggaaaatgacttccactggacccaaaagaacactagaaatgttttggaatcctcaataa
tgtcaggagaacatggccttcacaggagatcaggaactgattagagaggtaataggatgggaaataatatgacattataaattcaaaaggcAAAAGGATA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAGGATAagacataaaggcaacaaaatgaaataaggagggatcaggatgaggaaagggatgattaaaagaaagctaatattgcaatcagagaattaa
aatctgtatttgaggaagtaaagagtagaccttagtaaatcaaattaattatgtggaaattaaacttcagatgcattctgagacagagagagattatata
taagtggaggaaaaaaaatcatctgtatatagttaagttataggtaattttattttcttttttgtttattagtttcaaaaacatttcttctataataaat
aggtattaattttgaagcagaaaagttttttttctttccttcaaaattgtgtttttaatatacatttcattcctgggtacctatccaatgcaaacttcgt
t UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 23330781 23331083 1000579 0 + 238456; RIP_Alu_chr4_023_01 NA NA SINE Alu Yb8 tcgatatctaaagaaagctggggattgatcgaaactaagtagttgaaaatgcatctctatccatgacttgaaccacaaaggtggtgggaggcggggtaaa
ggaaagagggataggaacttggagcaggggcaagaaagagagaaaatttattgaagtagagaaagataattggtatctggaatttcctctgcaatttaag
gctgtcaggccagcatcttgcacatcttcccacattgaacacatcgctattacggaagcagagctctattctaggatagattaaagagctgataggtgaa
accagctgcagagagcatctgttttgtttttgtttttgtttttattttttttttatttcagagcaggagtccttgcagaactAGAAAAATACAGATTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGACGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAGAAAAATACAGATTCCAgagttcttaggaggttgtagtctaggagggagttttcacaaccttccaatctttaaagtgcactgagctcaatgaatcc
ccatgagtccttccaacacgtgacttgccatagcaactttatcttccaaaatattactggggtgaaaagacctggagcacagcttcacttttacccaagg
tatttcctattcattgccttattatttgactaacgcctgggtggctatgtttgcagatcctgtcttctaggctaccgtgaggagttgctccattacttat
ttcctaaatgaatagaactacctcttctcagtcatcacagcctaagcaaatggtttgaaatgataaacctgccaaacagcttgtggtcacacagctgact
tgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 36146317 36146632 1000580 0 + pAlu4-36304466; 238945; RIP_Alu_chr4_036_01 GAGGTCTTGGTTGTGTCAGTGTTG GTCACTGTCCAGACAGACTTATGTG SINE Alu Ya4 aatgcttaatgtcttattcaagccattttactacagtctcaattagtgaatatattcataaatggtggttgtacggaggtcttggttgtgtcagtgttgc
tactaagttatgagatctgttcaaagacaaagaaatattgattttaatgtttcagagcttttaagactaaaattttttggagctaaacaatatattttaa
caagcaaaattttttaatttttaattcagttttcaatttttggtcaatttcatattaacaaatatcttctatattaattcaaaggattaaaaatattttt
caaattctttaaaaataatttttgcttattttaacaatttggtctttggtcctgaaacagtaaataattgagtaagtggctatAGAAAATATAACGGGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAAAAAAAAAAAGAAAATATAACGGGTAggtaaaggaaaaatgatttacttcttgtactagaaaagaaaagcttttatgaaatagcacataagtc
tgtctggacagtgactatttaagtctatcatcagaatatttccagtgccattgatctaaaaattagagatctagctttatttgtgaacttcgacaatttt
tagcaaatgtgttatattttattcacaaagtttatctgagagttacatacagtaagaaatacagtaaaatcagttttgtcaaagtccactcttggtcttc
caaaaagatatcatctctggatgtcaagcatcctcttatactttgtgttcaagtgaatattagttcaagctgacactaaggccagagacatatattgggc
agaaaaataaaaggga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 36519156 36519484 1000581 0 - 16933; RIP_Alu_chr4_036_02 NA NA SINE Alu Yb8 acgttgggttagtaacgagacgagtactctagagaacttttgcatttaggacctctatcatgttaccgtgtgaacaagcatgggctaggccccatgtaaa
tgagatgagccatctcagccacacgttttggggtggtttgttatgtgacaaaaaaataatatgcttggattaagtagaaggaacaaaccctaccatacta
taaagaagggcactacactaaaaaaaaattcattttcctaatcaatattcaagcctttatatactttcaaggtcaatgatagcttagtaatcatcaacct
actcttgtggttactacttaacaaattctctaagaatggtgaaatttttctttctagaatgttcaggcattaaacattctccatttAGAAGATTCATCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGATTCATCCAaaagtgaagtaaaagggaaaggcaacatcttttttttttttattatactttaagttt
tagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccgtgctggtgcgctgcacccactaactcgtcatctagcattaggtatatc
tcccaatgctctccctcccccctccccccaccccacaacagtccccagagagtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccac
ctatgagtgagaatatgcggtgtttggttttttgttcttgcaatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaa
ctcatcattttttatggctgcacagtatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 38707486 38707753 1000582 0 + 238899; RIP_Alu_chr4_038_01 NA NA SINE Alu Yc1 aaacaagttgctttatttttaacttaggacttcagagggcttattatttcgaaatcaaatctattaaacatcatgagtatattatttctcattaagattc
cttttgaattcatttcacatgttaaagacagggtatcagtgaataatttataagtaaaaattattttataatatttatcttagaaattaaagtgaataga
acatgagaaaaaatgaaaaaaaaggacaagaaacgaatggagtaagactaggcaggggaatttcacaaggttaattgcagcacttctagagcactcttag
cttaccatcaaataattttactagctattttatttagcattagttgtcaatttaactcatttcataggtcaactattattgtgattAAGAACTAATTTTT
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTAATTTTTaaaaaccaagacaattat
gtccaagttttcttcatttaatcaatatgggactatattaaatgaggctataaaaagatgttactggtgatccataaaccattagaaaaaaataatggtt
tttattattattattttattattattacacaattgcatgtgtataacattttgcctagtaatcaactttttgtttatggcagctctgtgcaaaattcctt
ctaccactaaataatgtaaaagaagacagtggtttttgaacatttttgtttgttggccccaagtagggttcctttgaaacaaaattccccaataaatcca
cctgagtgtggtggtatgtgcctgtagtcccagctgcttggggactgaggcaggaggattgcttgagc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:TMEM156:NM:024943:1/7
0 chr4 40706022 40706023 1000583 0 + 238217; RIP_Alu_chr4_040_01 NA NA SINE Alu Yb8 aatgataagttaatggatcatgaggcgcattgccacacccatctagacttgggacttggttttctctgtgtataattctgcttttgtacactttagcaat
gaatctgattttgaaacagttactacacaagatccatctagtttcatactctgtgtcttcaattttattaaatcccaaactaaacataaaattacatgtg
ggtaccactgaaacctgtacccaggaaggttcaaaatgatgcatcttttcaacgttttcataaagcaaacatgaaacactaagtgattaacagagagact
atatacagtgtgaccaacaggtatttatttatctgagccatcatgcttactacctggggccactgagggaactgtatctttgaAAAAAAACCCTAACTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTGAAAATACAAAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCANAAAAAAA
AAAAAAAAAAAAAAAAAAACCCTAACTAGgcagtagcaagatacaacctttcttttagaatcagggccaaggcactctttaacttttctaaactcctatg
aaaatagtcatttcacagatgcttttcctttttcaaatagcctcttgttttcttaaaggacagactacagaggaggaaaagggcagccacatattgtata
catgattgattgtacaaaaagaagttactaaacagctggagggggcgattcagtagtaaaggaaaatagaaagtagtcagtctctaggttagccattgca
ttttattgtataaatagcattctaacttggaaaggatgcccctgaggtagaaatgagtctatttttctaggctccccaaagtgcagtctacgatccaaag
ataattgcatca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:APBB2:NM:173075:6/17
0 chr4 41139970 41140051 1000584 0 - 13233; RIP_Alu_chr4_041_02 NA NA SINE Alu Yb8 gtttacagaaaagagtttagccattgcttacaaatactgtaaattaacagatcttcgtttctcctaggaaatggtacttttggatcacatgtgaaggttt
aaaaaaatacagctgccctggcttcctgaaatctggaaagctttacagcatgaaagaagaatggtttcattggataataatccatctgcaataagagcaa
agtccatactactattaaatgtgtttatccactgattcatctgaatattccttgatttgctttaagtaccataatcaaatgttgttatttaattcaacaa
cgattcaggaaaagcaatttggaatctcacaggtggtctgaattcactgtgttggttacatttgatgcacttcccagagcagAAAGAAAAAAAACATCCA
GATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAACATCCA
atatgatttttttttctctttaccttggagcataagacatgaagcttttatgagggaaatcattccccaaaagtgaaactgttgcttgctagcttatgtt
tccatttaaacaaatctctaactaaacacacatgaaaaatgataggacctttcctttgataaaaatctagcatctaatattggcaggcaaagtttaagtc
acttcctgaattgctaaacaaacagctacacaaaagaatcacacagtacatttgtatgtttccctttcatttacttagcaattcctttcttcatattaaa
aatcttagttttccagcaattattgtttaccctggttaaatgactgatgtataataatgtaattacatgtgatacaatagag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:LIMCH1:NM:001112718:1/26
0 chr4 44204152 44204452 1000585 0 + Yg6AH44; 9369; RIP_Alu_chr4_044_01 GAAAATTCTGGGATGATTGA TGAAAACTACCAAGGGTGAG SINE Alu Yg6 acccacaggataggagtcaggggaggaaggtattgttgttccttaaaaggtgtctatatattactcaaattgtgcagcactgttctagtttgaagcagaa
tatggtctcagtgtgttttagccttgcatgaccttttgtttttaaaatgactctttttcttttcgtctttgctatttaccttggaataccttcctacaat
attttacttttgtggctctcatgatacagacatggacttttctctctctggtatataccatctataaatcctaggattttttactcatagaggctgggca
ttaagagtacacaccagatttaatagatagtgaaaattctgggatgattgatgatattcagaaccagaagaacttggatgtgtAGAAAAAACATCAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAGAAAAAACATCAATATcaggaaagcagggaagccccagtgaagacctcacacttaatttttttattcctgctcctcacccttggtagttttcatggca
ccttcaggtgatgaaaatgaagaaagacagataaaatatttaatcatcaaagtttataaaacttgtgtgaaagtttgctttactgattcaggcttaagac
aggatattatctacttcaattagtttggaatacccatgagggcagtaaccacatataccttgtttacagttgattccaacactaagaacaatgaccagaa
caattgctcagtaaagactgtatttatttacctcattatttctagtatattcagcgtatgagggtaagaggtggaagatcaagatatcggtatctgtaaa
g UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 464 146 NA intergenic
0 chr4 52917199 52917200 1000586 0 + 17800; RIP_Alu_chr4_053_01 NA NA SINE Alu Ya5 gtagaccaatgtgttgatgactcacctcaggtttgtgtattgcattgttttaaaatatttctctttgtgcctcaaatttagaagggaactcaagacagca
gtgaggaaacaagaaataggagaaaatatttgtttgcatttggcaaaagagaagccgaaaaagagcctgggctgttgcactttacaactttgctcccttc
ctccacccctcgaattggggttcatttataacagggaagcagcttgacaagaagcaaatatgacttatctgtaatattttatttattttaaaaaagaaag
aaagactagaaccaaatctgactaaacttaaaacttactaattttgcatggtagaaagatgaatgtttgtcatgtgggtctttattAAAATGTATCTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAAAAAAAA
AAAATGTATCTTTAaaaaaggttctaaaggaaaaagaagaacagaagattcaaaacatttgatcagaacatttggtaccagcccttgcattaccatgtca
gtctatgtgtccctgagcaagttattgaagttctctaagccttgtgatcataagacctgtcttttaggatgtggttaatattaaatcagaatatgtatgc
agaacacccagcattggacctagattcatatgttcttaattcatggtggccactatggctactttctgatttcccaaaatgtgtctgctacagttttaaa
tgtatattctctccgaaattcctgttgtaacttaatccccactgtggtggtgtattagtctgtccttatactgctaataaagacatacccaagattgggt
Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 57842788 57843099 1000587 0 + 238724; Yb8NBC71; RIP_Alu_chr4_057_01 GTGCTGAGCGCAATCTTGA GGACCAAGGGGTGCATTTA SINE Alu Yb8 gatttgaaaatgcattttgggttagcaaccccatttccccctgatggggggataagggacgtgaataccacttttgcactcactggctgatcgtgtgtgt
atgtgtgcacctacatgtgtggtggagggatgggagggatgggagaaggccatgcaggaggaacgtgagaaataagaaggaacataaatattctcccagt
cctttggaaaatgcttttgtttctgatttttacccttggtgcccaatccaagcaggagtgaggaaagagaaatgggcactgagtgggagaatgatgaaaa
agatggaggaccaaggggtgcatttactctttgtctttatcactagcatctaatatttgcctctgaaggctaaatttcaattctttAAAAAATATTCAAC
CTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG
CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATTCAACttaattttaacttttatcttagaggactcagctgtacgccacatatttaatctaatcaagattgcgctcagcac
tgctttcagtccttgctgagagctctattgagtcatttattaactcgatgacttaaatggaattcacaggccagacacaaatctaagagagaggaggagg
ctaggctcaggaaggaaaggggaagagagttggcttatttcaccttggtaatagaaggccctggacaatataacaatggtctcgagacccaggaatgttt
gttatgaaaaggatggagaccactgtttgccatcagtatagagtggacaaatagttcattgttttattttgttgaattttaacagtcccttagaggctgc
tcctgatcaagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 61 493 167 NA intergenic
0 chr4 68719503 68719809 1000588 0 - 16457; RIP_Alu_chr4_068_01 NA NA SINE Alu Y aatgtgtctatgtctcttttttctatgccatttttataaaattatgagacaagcagcctactcaacacagtagaagcttaatatgctgaatcaagtggca
cactgatagtacaagcgggggatctttatacttgcatgcttgttcatttgtgctatgcactgcttacatccacttcctcatgagaactgcactggaagag
ctcaggtttatatttaaaaaatttttaaagatttatacaaactttaaggttttgcccagaaaaaatattgtcttttaataatattttccaggttaaggtt
tgttaaggaataataaaatacatgaatgagtgaaatccttcttagtaaatgctaatgaaaagaacttttcaaaaattttattgtttAAATACTTTTTCTG
GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATACTTTTTCTGgattccaaaaataagattttcagattatctcttgtataaaagtaaatttgaaggaatagaaaaaccccatacctctaaa
agtagctttttcttcttggttctgtcatattttctttgactaaatattagctctggactaataaaatacttttctggtacatcttccctgaagggctcct
aagggttttataccacagaggaaaattctaactgaaatactgacatggggattaattacaaagagacattagtgcttgtatgtaatatagtctggtaaac
aattcaaaaatactactaggtcataaaaattccacttaattttttttgcaagtatattatgtttatgaacacctccaggctgcttataactcacccacct
cttttta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 70448264 70448265 1000589 0 + 5298; RIP_Alu_chr4_070_01 NA NA SINE Alu Yb8 cagcagatgccaaaactgctggtatcttgatctaggactttttagcttccagaattgtgtgaaaataaatttctcttctctatagattgatgaatctctg
ttatttttttgtaacagcaaaagtaggttgagacaatatgtgaatctccaaaagagaatatttgaaataaaataagaatgtgagggtaatagatactaga
tccaaaatccgattaggaaacaaaatgataaaagatataggtgagatgttaaattaatttgaaataacacttgaaagaattgataaataaattagaaaca
gaaatcaaggcttatggcattaaagtgaatttactaattgaaattatttaaggcaatctcaatgagctaagaatagtaaaaattaattaaaacaAATTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTAGataatacagaatgaggatagtcaaaatattttaacatagggacaactgaaatctgatgtcccaaaagcagagaaaaaatg
gaactgaaaattatcctaataatcaaacaaaaattaatttctagcataaaaaatgaatatattaaatcttggattagctgtgttataaagacacactatt
agcctggaaaatgtataaaatatataaaaatatattaaaattaagcttctgagtttaaaatgtaatgatttttttctagtcaaaatggaaactttaaaaa
aaaaatatttgacagatcttaaaaactctttagtagcatttaaagctggaagactgaatattatttacgcagttccgaagggaagaacgtgagagctaag
tatatgatattaag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 73048508 73048820 1000590 0 - pAlu4-73230177; 238850; RIP_Alu_chr4_073_01 NA NA SINE Alu Yb8 aagcaaaatataaacaatacaagaaaatcaaactcacagtcagtcccatgtataatcataaacaatcatctaaaaaaaattagaaaacttttacaaggaa
tataaatttaggttaacatacaaaagtaagaaaagccatgttaaaggtgagttaaaagtgcaaacagtattcagtaaaattcagtacttttttattttaa
aaactttgcaaatttacacaagaagaaaactttcttataatgtctaagggtatctaccaaaaatgaaaacacatattacatatagtcaatagtaaaagtt
aaaaatacattgtttaaaatcagtcacaacacagagattcagtttttatctctactattgtacagaggttctaatcaatgtaatAAGATTACAAAAATAA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAGTTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAGATTACAAAAATAAgttacgatgaacaaaaatcacaatgacgtaagaaaaatataatttgtagattctataaagaaaatcaaata
ataacttctatggagaaagtattagaattaatagagtttagcaatgttattgtgtataaaattaattacaatagagagttactataatccaaactgttta
ctctaaaatctaagtgtactttgaaacgtaattcagaaaagattgcatttataataacaaaagttagttccgatcctttataagttgtactacatgatat
aaaaggtaaataaaagttattcagttcatttaataaggctaggaaactgttgatattgagctcacatcagaacaattcacacacaaaaaggatcatttca
cacacatatatag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 80424767 80425080 1000591 0 + 238695; RIP_Alu_chr4_080_01 NA NA SINE Alu Yb8 aattactaatcatattaatttgaaaggctctacagaggttgtgaccctaagtaacaatcccatgtccctctcagggctatagtgtcccaccaaagtcaat
gcttaaccatggctctggagtaatggaaggcaatatgaatcagtataaaggagtctcatcaacaaaatgcttttctatttacttcttaaatcgaatcttg
actgtcatagggtatcttcctctgaggtagagcataaattttgatatccatgtctatcaatcaagtttgattcaagagtatcaggttgattatttttaaa
aaatctaccattagtcatcataggtaacagcctctagcataacagattctagttattgttgtttcttgaagaatgattgatgtcttAAAGAATGATTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAATGATTGAGgtctttaagaatgtgcatactcagtattaaagtattggttaggaggtaggtgactaatttagcacatttttt
gaaagagtgttggtagattctttagtggggtgcatttaaaatcaatcagatattacactgtagcttttgcagcattggacagaaccagtagatggtggtc
ttaagttgcaagttgcttttacgctaacacctgtcagcatgtgaaacaactactgctttcaacaaaatgttgaaattcacctttctatttatcagatgcc
ataaattggatgaaggtggcacatgagagcattttgaagtgacatgttaactgttgtttatttttcaaaagcactgatctgaaagaacacacagactatt
catcacagcacttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 82210555 82210860 1000592 0 + 3330; RIP_Alu_chr4_082_01 NA NA SINE Alu Yc1 gcttgcttattgcatcctagctactgcgtggagccagtgacccctcccaggttaaccagaatgtgaccttgctactgtgcagaaatagtttttaggcagc
cctctcttccagtgattccagagaaggttgaagaccatagagttttgtctttctctttactgtgaactaattatccattagtgaggctcttcagtggaat
tttgaagttacatttagatgttcacataatctctctctctttctctctcctcctctttattgttctctaagagaaaataatctgcacatccctgttctca
gcgtcatttattcctgcccaaaaagaattctgaacgattgcatttgtctggtgacggctgttgctacactgaaataggaaacatcAAGAAATAGCTTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAATAGCTTTACtctttaatctaatataaagtattaaatgccaaatggttctagaatggagttccttttgatcttatgttcgattaaaact
ttttcaggaaatagattcagaggtaccttttgtcacattatttgttgttcagtcacagaggacataggaaatttagcatttgtcatctttttctatgctt
tgaatacttcttgaatttacacagcttgtaacaaacccatcaaaccctttgaatctagaaatatttgactgaggacaggaatgtttagaacactctttct
gcttaaaagcaatacagataaaggagaaagagacagagagagagagagagattccatcaatatctaagcacagcttcaaaattccactgaagagcttcac
aaacag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 84440744 84441017 1000593 0 + 290; RIP_Alu_chr4_084_01 NA NA SINE Alu Ya5a2 taattggtttttgaaaccaaagtgtatgagaatctacttaagaagtatactctagctattctttttcttactctaaccaataaaaattaatgctgtaaaa
gaatcacactgatctcacatggtatgatattttataccaacccacatacctttgatagcaattatataaaggtatattttgctttagtgaatgtgttacc
aagaattatgtctttttagagtaaataatttaaatgcgttgagtggatcttgatatgtcaagttattttgaaatgcaaacttattctctaagataactgc
tagtttgtgttcacatccttttgctttagactcttagggtgagttatactcatattagtaagtattcatacataaatttcctgaatattAAGAATTATTA
CACTTTGGGAGGACGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCCATCCGGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTATTAgaacttgatatagtt
gactttgtcttttgctccctgtccaaactctctattctgataaacaccaataaatttattgaaagtttggaatgaacaaggaaaattacttacttggaaa
gtaatccatgaggtcccaaaggtcttagaaggtatttatccacttgcttgttagaaaaaggatagggtaaccgcaagtacttggtgacattatggaggtt
tatggcatacagagttaaatctccttctttataccttggactaaaagcaaagaggttaacttaatagaaatatgtatctaatttaagcaattaaaaactc
aattacaaatgtgatcctaagtattagtatccataatgacaatccataatgcatcctaagtattaggatccata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:HPSE:NM:006665:12/13
0 chr4 86879794 86880102 1000594 0 - pAlu4-87053447; 238106; RIP_Alu_chr4_087_01 NA NA SINE Alu Yc1 gcctgaacccaggagtgggaggttgcagtgagccgagatcaccgcactccagcactgcagcctggacgacagaggaacactccgtctaaaaaaaaaaaaa
accccaacaacaacaacaaaaagaatatcccagatcggaggtaggtactttcaatagaagttctcctctgagaagaaagcatttaaatagagatttgaat
gataagaaatagccaaacaaacaaacaaaacaaaacccaaaggcatgtactctgtaaggaggggatccagcatgtgtgaaaggccatcgatctgaaaaat
ctgtggacattcgtgaactatgtggcaagtctgtgtggctggagcatgggagcaaggggcgataggggatgggatcctgtaggctatAAGATTGAACGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGATTGAACGTGgagttttcacgatatggagagtgtaatgggaagctgttgaaggctttacacagccagttagcacaatttaaaatgatc
tttctggaatttggaagaaaatggattctagaaggattaagtgcagaaatctaacagaaagatgatttggtatacatgagaagaaacaggagacagagag
aagaaaaccgagcagagatatattttggaagcagaatcagcaccactggttgatgattggatgtcaagtgtgagaaacagagaggatgcaaggataatgc
cctgacttatggcaagtcctaagcttttcgttcagttaaatgcatattgaccacctgaagatggaaatgcatagaagggttctgggtagactcaaattac
aaagcctac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ARHGAP24:NM:001025616:3/10
0 chr4 87285393 87285559 1000595 0 + 15570; RIP_Alu_chr4_087_02 NA NA SINE Alu Y atccagaaactccatgtttgctttcaggacaaaaataaaggaatacaaatgttaaaaacttacagtgagctgctaaataagtacaactctatgaacacaa
ttggataaatttgcacactatggacacagtagctaagtctaagtttctattccctacccggtaatatgtttaccaaaaaaaacccaaaaaaacaaaaaag
atatcaatgataaagcacttctaccaattagttttatcctccttaaaatacaacgaagcagaaaagtggcaattttacaaaaattactctgggtccagtg
atcttttctagtatttttttctacttttcctttcaattgctttttcctatgtagcacaagggtcaaaagatttcttggtccattcAAATTTCTATCTCTA
GCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGAT
CGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACACCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATTTCTATCTCTAtttgatgattttagaaaa
ttagtgatgaaatattatacagcataccaaacatgtgttattgtaagcaaaaatagtatttctcaatgtttctgtttcacaaagaattactgcttctttt
caaagctacttctatatgtaccatcctgcttcctccgaaattgttctctaacaattatttttggtttcttgagtctctccatttctctctgggaatctct
cagctgcctgcttgatgttcctacatctctctgtctgtgtgttctctcttcctcttcctcattgtgtatctgtcatctatttctctctttcttgctattt
ctgtgtatctttcttcttctgtctctctgtctcattctcctcttttactctgtctcagagcctctct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:MAPK10:NM:002753:4/14
0 chr4 89256711 89257028 1000596 0 - pAlu4-89430373; 238956; RIP_Alu_chr4_089_01 NA NA SINE Alu Y aaccccccgcgctcaagccatcctcccacctcacccaagcagctgggactatagacacatgccaccatggctatctaatttttgtattttttgtagagtc
ggggtcttgccatgttgcccaggatggtctcaaactcctgagctaaagcaatctgctgtggcctcccaaagtgttgggattacaggtgtgagccactgtg
accggcagacactacttaattttctggtaactatagattgcagctttagcccttgagtgggtatcggtcaatagagtggttagtcctaaacctgacttag
atgggccaaaatttctaacaatcttggacagcatggttctttttatttcaaattgaaatgtgtgatttttaaaattttagatAGAAATGTGTGATTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGTGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAATGTGTGATTTTTTttaatggcttgtgcggtctgcatcattttagatatatttggatatgattacaaatgattcccta
tgatcctaaatataattttagatattcattggccatgtttcttaattaggttttaataaaggggatgaactaagagtcagacttcaggccacgctgagtt
cagatgatctcatcatccaaagctgaatggttcaggtgtgctgtgctggccatgttctatcgagaatactgctcaggggatttgttctctatttggaatt
acagcagcacagcagttgatttggatttctgaattaattaattaattaatttacctttgagacagagtctcactctgtcgcccaggctagagtgcagtgg
tgctttcagagctcactg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ABCG2:NM:004827:7/16
0 chr4 91601233 91601541 1000597 0 - 7235; RIP_Alu_chr4_091_01 NA NA SINE Alu Ya5 tcctgttacttagtagagtgccaggcacaaaagaggcactcaataatctttggtaaatgaatgagagactgaagaaaagtgaagtgaggcatgggggaaa
agaaaagatgctagccaagcacaggaaagagtgtgctaaaaggcattgagatatgagaaaatgttatatatatattgagaaatggaaataattcaatgtg
attggggcctagacaagacacaagacacaagaagttaaggaagactgagctggaggcataggtcatcggcaataccttaaacaccttctaaacttaaaaa
cttaaaaacattagtatttgatcctaaagttaatgggaattgataccgatcattaaacaaagagcaacatgatcagctttatatatttttAAAAATAGCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATAGCCtgggcaacacctaagtacaggaacaagactgagtgaaaccactgacagcactattgaaataaacaaagtgagaaatggtga
gggcttcttattatttgaagtagcagtgtagtggactagaggggaaaaagtcgagtgcagagtattcagaaatgttaacacttcatttcaaatatatagt
cacagtctatatctacttattttctttattaagatgaaatacaattctcagcacattacaaaatcagaaaatacagccacagtacagatgggtgtgagag
aagagccatcaaaagaagaaagcaaagaccttcaaattattaggagacaatttagtttacaatttaaatttaaaagtattctatacaaccatattattta
aggctaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:KIAA1680:NM:207491:4/8
0 chr4 93612102 93612407 1000598 0 - 12299; RIP_Alu_chr4_093_01 NA NA SINE Alu Ya5 tatgcacctacaataatgtctaaaattaaaatgtgtaaccacaccagtattgatgaagatgtggagcaactgaaactcttatacattaccagtgggaaag
taaaatgttacaactcatttaaaacaatttgaaactttcttaaaaagttaaacttataccaaccaaatgaactcatcattccattcctaggtatttaccc
aaaatttcaaaacatatgttcctatacagacttaagtgtaaatgttcatagcagctctatttgtaacagccaaagctgaaaacaacacaactgtccatca
acgtgtgagtggataaacaaatcatagtatagccatccaatgaaatagtataaatttataacaagcaatgaactattgacattcatAGAAATATGGATAA
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGAAATATGGATAAatccccaaataagtatgctccgttaaagaaacaaggccagaaatgcaatgtagattgtatgattctgtttatataagcct
gtataaaatgcaaactaatacagtgaccagaaaaaaaccacgttttcctgggtatggaattgcagtcaggaagtgtgggtgagaagaattacagagaagc
aagggagtttggggggaatgatgactactttgtgtttacaatttttaagtatgtcagtatttatcaaagtgtacaatttaaatttgtttaagttagtata
tgctggtcatacaataaatattttaaaatgcatgtgtaaattatttttattatttcagttggttgtttatgtttattattaaaatgttaacagttagagt
taaaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:GRID2:NM:001510:1/16
0 chr4 98116234 98116554 1000599 0 - 12119; RIP_Alu_chr4_098_02 NA NA SINE Alu Ya5 gagaaaaataaaaacggacaaaacatctttttagtttaatagcagtattgtgtatatgagagatgaaaatagagagggtagaggcaaatgagagagaaag
gacctatttggtcttaaattttacatatattttataagtaatcataatctttctgtttttactctagaaacagaaacagaataggattaatcttttattt
ttgtaaatgaaatattttcttaatcttttattataagaagtcattgtataatgtttacaagacttcgactgtttctaagaaatgttctacgaatatgtat
tttaacttggtcctacctgtgtgtcaaattatagctaaaagggaggaggaagggttagaaaagaaaaagataacttgtgaagactAGAAATGAGAGACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAATGAGAGACTTgcgtgtactttggattcgtattaatagtctaaaagttaaattatttacacatatttcgaactct
ttaaccatgttctattatttgaactcaattatcatcgggtttaagttgggttcttattaataaaataggtcccttcagaaggcacattagtgctttaagt
caagagtatattaatagttttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaatggtgaaaccccgtctctacta
aaaatacaaaaaattagccgggtgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggagct
tgcagtgagccgagatcccgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 98329680 98329993 1000600 0 + pAlu4-98503335; 54298; RIP_Alu_chr4_098_03 GTCTTTGCTCAGGGCAGTTTTGG GTCTACGAGGTATCTCCACTTAG SINE Alu Ya5 gctcacagtgtaatttgatcctgatccgtaacatcaaaggtgcttccatctaaaccctgaactctgccttctgatgaagatttctgcaattactatagaa
gagggtgtgcgtgagtgcgcacgtatgtgcatgcatgtgtgtgcacttctatttaaaaattattctaatgtaattttaatgattacatagattgcctatg
aaataacaagtgaggatttttttactaaattttataggatacataaccaaagtgagtgttctacttcaaagagttcccttgggggaacacaatttattcc
atttcactgtctttgctcagggcagttttggaatgaaattcctctgaagaatttgccttttaaaaagaaaaagaatttgcccttagaaTTTGCTGTAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAGTTTGCTGTAGAGgaaaattgtcaacctcattactttgtagtcataagacatgctctcttatcctgaacctttattttctcttcttt
tcccttcctctatcctaattttttgatgttaagttctacaatttcctctttacactcaattgttttttgcaaaacttattagaaatctaagtggagatac
ctcgtagacaggtagataatgagagatgccatgggttttaaatgtaaaactgggagtcagaagcatgccaggtatttctgagtcatgagactgccttaga
tcatcaagaagtcaatgtatagacagaaaaagacatgagactgtggtcaaaaacttgggaactttaagatttagaagacatctgcgagaagagaaacaag
ccaagaagactgag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 98352414 98352712 1000601 0 - 12977; RIP_Alu_chr4_098_04 NA NA SINE Alu Ya5 ctgcagcaaactgattgtgcactgcaaactgcaaactgattgtgccactgcaccccagcctgggtgacagagcaagaccctgtctcaataaataaacaac
aaacaaacagacaaacaacattgatacaatatgatacaatatcgagcatttggtgccaaacagcaggcataattctgaataacagaaactgtttagtccc
aatactactgctgacagtacctctagtgtccttattcaaataaataatcttttattagatgataatagcaaatcctaatacagtaagtcttcacttagca
ttgtccataggttcttggaaactgtgactttaagtgaaacagcagaaaaggaaaccagttttaccacaggctaattggcataaacAAGAATTAAGTTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTAAGTTCCTatggcatatttatggttacaaaaacatcaccaaactaaataaagaccaaaacactactaacactgaacatagaaataattgtaacc
tgtatgtacatttaagaaagattaataaaaacaagtaagatgattatttaagttcaaggtagtagatggacagtgcctatcccagcatctcaggacacca
ggtggaaactgacccttgacaggatgccatcctcttgcagggtgcacacacacacacatacacacacacccatactcactcacttggactgggaccatgt
agacatgtccattcacccaacccagagaaaacctatgcagacatggggagaatgtgcagactccacagggtcaatggccctggctgggaattgatttct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 100242074 100242400 1000602 0 + 238927; RIP_Alu_chr4_100_02 NA NA SINE Alu Yb8 tcacaatggcaattaaatttccccatagttttggagggaacattcaaatagtaacatctagctagaacagcctgtctgttggcagaatgaagtagaacag
tttagtgggaacaaggatacaagtgtatttttcatggaccaaatacagactctggaaaggatacggttgtggatcatcgggaaaagaacttcacgaaaga
gatagatgcacagatggatagtgaaggtcaccctggtgaaagccaaggactgaatgcaggtcttaaatggccagttgtggaaagaatcatccttataaaa
gaattgagataggagatctctaatagaggaggagttctctaatagaggaggagttctttgtgaaacccacagaaatcccccaactcaaaaaaAAAAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACCaaaaaacgtagtatctaaaaggtagggcaccaatatcaaattgcaactgtactggccatatgcaa
tgtagagcaccaatatcagatcgcaactgtactggccatatgcaatgtagtctttttctccaggtttcccctctcttctaggctggacaatggaggaggc
ttgaaacagtagctggcaagtggtagaagagatggagcagagaagcaagaagaagcagactcctcactccttcaccagggtggatttgctggtttgaagc
agacctgagttgggagaggagagaggcgagaagttttaattggatgaaatatttctttagactggtctatacttttttctttatatctaaaattcactgg
aagagctatgaaatctgtccaagattt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 103352381 103352382 1000603 0 + 1387; RIP_Alu_chr4_103_01 NA NA SINE Alu Yb8 tcttaaactcctcacatcgtgatttgcctgcctcagcctcccaaagtactgggattacaggcttgagccatcgcgccaggccaagacgtgtcattttcaa
taaatcattgaagttgtacggacttactggtaaaatgaggttctgtcttgtccccatttgccctgctgggtgcgtctatcgaagttactttgatctactt
tatgcttcctccttccttggtgcttttcagagtgcaacacaaaacacactgggttatcacagttcagctctaattctgtgagaatgccaataatgaggat
gatcgattgatgggtaatagaacaaagccttgcatttgaaatgtaggagacaccttacaatagtaaaaacttaagaggactcaAAAGGTCCTACAAGATG
CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC
CCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG
GGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAAATA
AAATAAAATAAAGGTCCTACAAGATGtagaaaacataccatattatcatcagttttaattacaaaataataaatattagcgttattataaattgttcaaa
tttacaaccattctgttaacatgtgataacttgagcctgacacatagctgtagttttgcagcaacatagatgtggctggaggccattatcctaagtgaat
tactcagaaacagaaaaccaaatagtttataagtaaaagttttataaaatataaactattttatagatagtatacttcattgcaattacaacaaagagta
tgttttctttaaatggagggaatatcattgcagttctcctttcaaaacaaaggcttcagagaaatgattaaccaaaagatctatataatagaaatcaatt
gtttcttaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 110718207 110718514 1000604 0 - 237808; RIP_Alu_chr4_110_01 NA NA SINE Alu Ye5 tgagttatcaaattttcatacatcaaccagccattcagatttcaagaactatattcccatatattggtttatgagcacttaggaggataactttaaaatt
taagatactggattttttgtgtgtggggggaagagagagagattggttttaagcaacaaaagagatagctatgtactaaactctaattttgctacagata
cgatactgagccaaactcttttgaagttccttgcccaatattcttggattatttgaagtcatatttgacatctgactatgcaaagaatcaaactctcttt
taattaattgaagttttccacataaaactgatgtggctaggtcacttttgtggtcccttttaatatttaatctcataggtcttAAAGAATTCAAGTACCC
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGACCAACATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCGGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATTCAAGTACCCattttaggctatgaaacgatcaagttttagcaatattcaaagctctacttcaattaagtcaggtgacaggctggg
tctgagccttagttgctttatcagttgatcaataaatacagggtaatatcagtacctatttcccaggactcccagaagtgagggggactgagtgagacaa
agctcatgatagtgtatggcacatgctaagcattagctatcgttttacatgtattattaatgaaacaaaaggagtgctgacttcaaaagctgctggtatt
aaaaactgcacaggatttacttggaaaaaattagctctgtcattaaaaatgattgaataaagcacctgaagttttaacctggactgaggatttttccatt
tcagtttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:CCDC109B:NM:017918:1/8
0 chr4 112028219 112028508 1000605 0 + 6172; RIP_Alu_chr4_112_01 NA NA SINE Alu Yb8 cattctctgcttttttatgttttagagtctgtgtttggtgctaggttaaatattattcttttcttgcatttctccatgaatatctacttgagttttgaat
ttgaacatatccagttttttaaaaaaattaaaagaggaatattttggaggagaaggcaactgcttttcatctcagtaaattcagaaaacaacactaacgt
gttttgtaaatactgacttaaaaataggaatgaaggaataaatttgagagatttctaaagactctattaaaacatttgttaacacaagccttgtttactt
cacacaattaatgtataatttaatatctatttttaaaaggtaaaattattactctcatctgatataagatgaccatacatcAAAAATTTTACTTAACTAA
CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGCGGAGCT
TGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATTTTA
CTTAACTAAaacaatttatttaactgattaatttatgagaaagccagtgggatatatagcaagattaaaagagaaatcaaagtaccacactcttattgtc
agattaggaatgctgcaataaattcgcaaatgaatgccaaactggcaaaactggtcaatatctatagaacaataatcaactgcatttcacagaaacaatt
tacatttctataggcaggaattatttgtattactatcaaatttctacaagtgttctacaagttaatgtccatcactacagttataaaatagcctgctcaa
agactaaaattgtgtaaaattttgcacatccctaaaattgggcatataaaggtacacaactcaaaagtatcagactgtatcattctatta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 120233248 120233249 1000606 0 + 30866; RIP_Alu_chr4_120_02 NA NA SINE Alu Yb8 gcaatttatgggttaacttgtctttgaagttcttttttactcatcacccttcctctgccccaaatagaactgactttttttccctttatgtccctactgc
ttccaatacaggctatttttcatagcccttttagtatagtaagcccacaagtctagcacaatgcttgcttatctgattctttgatagacacaaacataat
tcatggaccgtgaattatggaccatgagtgcctgtggctaaatgttggaaaagtggaaagggtcatctctgccctcatagcttacttatagtcacaaaat
aaaaacttgcagtccaaaagtcaaaagcactcccaagcccactctgtgtcacagatgtcacagatgatatggatttacAAAAAAAAAACTACGTCAAACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAACTACGTCAAACTttgtttttttttttttgagacggagtctcgctctgtcgcccaggctggactgcggactgcagtggcgcaatctcgg
ctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgcgcccggctaatttt
ttgtatttttagtagagacggggtttcaccttgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggcctcccaaagtgctggga
ttacaggcgtgagccaccgcgcccggccagtttgacgtagtttaagggatctgatttatagacctcctaaagtcctgtgcttatttaatattttcaaata
ca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 122028393 122028696 1000607 0 - 237878; RIP_Alu_chr4_122_01 NA NA SINE Alu Ya4 gtttatcataaaatggaatattataaagattttatgataatatttctattatgcttagcaacatgggtgaatctcagtaacaaagccttgagtgaaataa
gctagagaaaatggaatacatctgtttgattccctttagctaaagtttgaaagcaggtgaagctaatctataaaattataaatcaggattgtggttacct
cactgtgagggtagtgattagaagtagatatctggggagactgtttcttgatctgtgtgatagctatatggctgtgtttactttgtgagaattcattgag
atgtatgcaccaagtttctgcgcctttcagtaattgtgtgacacttcaataaaaagtttagttaaaataataagacagaacaacaatAGGATAAAATGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGGATAAAATGTCtaggctgtgggtttctgctttagctgggctgtcaagttgtggtaggacctaaataataagtgtagcggccatctgaagaagaa
ctaggtgaagaaaccagattgtagcagagatgacaatgaagtcagattgttcaaaggacagaaacaaagcagctaggctaatggttagtggatgagagac
cagtagtggtgtgtaggattagagaggcaattctagattagataatgaggtttattctggtggtagaaggaagtcatttaagggatttgagcaggagact
gatgagatttgatttatgtcttgagaaggtctttgtgtctgcctcgtggagaacaggtagagaggcaagagtggagcagggagaccacctagatgtctgt
tgct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PRDM5:NM:018699:2/16
0 chr4 125891202 125891507 1000608 0 + 238661; RIP_Alu_chr4_126_01 NA NA SINE Alu Yb8 ttaattctcttacactctagacttgtacatccacgagtgagcacccagttcataccaaggtgtccaagaagctctagtcagaaagcaagaggcatgtgtt
gtagtcttggggttgctgtttgaagctcgtggaagtttgtgtggaactggttgctgcagaagggcccgtaataaaagttgaggctataaagatttgatgt
ggcctacaaggttcctaatttgcaagggcctagccacatgaactgaaattactcaataattctaggcttctgcttccataccaccacccatcacacatcc
atatatttagctgggctgcttagacacatagtcatgcaaaacaattaggggcacaattagcacaaaagaagcttttgagtgaattatAAAAGTTGGTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGTTGGTCCTgcccagtggatgaattatagaaaggtgtctttttacatggaaccaacccaaatgcccatcaatgattgattgaataaagaa
aatgtgatacatatacaccatggaatactaggcagccataaaaagaatgagattatgtccttcgcagggacatggattaagctggaagccatcatcctca
gcaaactaacacaggaaatcacatgttctcactcataagtgggaattgaacaatgagaacacctggacacagggaggggagcaacacacactgggtccag
tcggggggtgaggggcaaggggagggagagcattaagacaaatagctaatgcatgtggggcttaaatcctagatgatgggttgataggtgcagcaaacca
ccatgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 129426700 129426701 1000609 0 + 9011; RIP_Alu_chr4_129_01 NA NA SINE Alu Yb8 ggaaaagcttgaactaggtataaaatgctgtctaaatccttgatttaaaaaaaatttacttcgcttggcctgtttaaatactgtactttggccctgttct
cttgtcccacgtgtgcttaagtaaacaaaaatgtattaaccatttcagttgatataagtaggcagacaccttgtgttcacatttatgtaaccagaagcaa
aaactctgtaagctatgtatttacttggttggattaaatgtgtatatatacacagaagtacaaacaactaagaaataaattacataattcaacaccaaaa
atctcctatttcttatccctattccaatgaacaaactacaaaccaaagcacttctaaaatatcttccagctatcaagcactgaaatcaATATATACTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCANAAAAAAAAAA
AAAAAAAAATATATATATACTTCTtaaatcttatacacctacagattaaattaaggagaaaaccagcttacttccagactgccaaccctatgactttaag
gcttggaggtactctctccaataacaggtcactttaggtctctaatttaattatttattcttattgtagtcaccacttttttttaaagcttagtattaat
cagtgcacaaccaggatgcacaatgttgctcaactgtatgatataccaacaggttccatgagtctggggtttattaacataatccaaaatgtatgctaca
accacactgtaaaaaaagggcgtctaaatcaactaccctacacaaagttccctgaaaacaaagttctctcaaaacaaagttctaaaaatctttaacttgc
ataactggcaca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PGRMC2:NM:006320:1/3
0 chr4 134515011 134515313 1000610 0 - 20624; RIP_Alu_chr4_134_01 NA NA SINE Alu Yc1 catggatgggattttctcacaactgcatcagagactgaagctcttcctctctaatgtttcttctttatccctgtcttttcagaggtgtcaaacttgcatc
acatgtttaaaaaccctccctattactactcccactctcctttgactttaactgatttttattcccccaaatctctttcgcttccaacttagattgagta
tctgcttcccagtaaaacatggattcccactgtatatataacaaatgtcaatggtattcaaaatatagtcttttctgtttataaattattaaagaaaaat
ataaagaacatgcgtgaagtgaaaaagaaatgtattagatttctattgctgctataacaaattacaaaaaaacttaattgcttAAAAAATACAAATTTAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATACAAATTTATtctcttaaaattctaaaaatcaaaagtccaaaataagttttatgaggctaaaattgaggtgttggcaggcctgtttcctt
ttggaggctccagggaagaatccatttccttttcctgttcagcttctagtgggcacctgcattctttggttatagaccctgcttccatcttcaaagtaca
tcactccaatttctgcttctgccatcacattgcctttttctcttaactcaattttgaaggccatttgtgattacttttagagccaatttagataatcaag
cataatatactcatctaaagatcctttacttaatcacaactgcaaagttccttatgccatataaggtgtatgggattagaatgtaaacatgttggggaaa
agg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 150380507 150380831 1000611 0 + 13443; pAlu4-150627143; RIP_Alu_chr4_150_01 NA NA SINE Alu Yb8 tttcattgataacatatcaatgcatctaatacattggcaaacttttatttagtaaaaaatctttaaagagcaaaaagcaaattttgtgaagaatattgcc
atgattataaacagatgaagaaacacagatgttaaaataacagtgttgatgcagatgtttcagagaaacaatatgtagtcaataattcctaaccaaaggc
ctgtaatggataacaggcctaatatattcacgtagggggacactaaactcaggttagacaaaaaccgctttccaggaaagggttatctaagattggatga
ctgacttcataaagccttctgctttgctttattaagtgtcttcatatcttttgcttgtaatttccctataatcggctatggttAAAACTGGGCTGCTCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGGCTGCTCTAactcaaaatatcaaggccttgctgattttcttgtcttaattgtttcctgtgacacagc
catcaagtaaagtcaaagcatcatagtattgttgccttctagaccaatactatccaacagtaatataaagcagtcctaaagagcaagccacatatgtaat
ctaaaatttcctaatatattttgaaaaaggaaaaggaacagaagaaattaattttaataatgtattttcatttaactcaatgtccaaaatattacaattt
taatatataattttttatagagatggggtctagctctgtcacccaggctgaagtgcagtgacatggtaatgagtcactgcaatctcaaacttttaagctc
aagcaatcctcctgcctaagcctcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 151170491 151170799 1000612 0 + pAlu4-151417127; 9448; RIP_Alu_chr4_151_01 NA NA SINE Alu Y tcttgaattgtagctctcataattcccacatattgcaggagggacccagtgggaagtaattgaatcatggaggctttttccccaatactgttttcgtggt
tgtgaataagtctcatgagatctgatggttttataaggggtttacccttttgcttggctctcatttctctcttgtctgccaccacgtaagatgtgccttt
caccttccgccaagattgtgaggcctccacagacatgtggaaatgtgagttcattaaacctctttttctttgtaaattacccagtcttgggtaggtcttt
atcagcagtgtgaaaacagactaatacagctttaaaataaacaaagtgtttctatagcctggggaaagaggaaatggtctacgttttTAAAGTATTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACAAATAAAGTATTTTTAaatgttggtttgttatttcttttgtttatgcccagtactcagaatggcttttttattttattttattttattttattt
tatttttttagcgatggggtctctctatgttgcccagaatagagtacagtggctattcacaggtaggatcagagcatactacagcctgaaactcctgggc
tcaagcagtcctgctgtctcagcctcccagtagctaagactacgggagccaggtcactgtgcctggctcagaatgacataattttagaaggaagtgaact
taacatttattttcttattttctccatttttccccagctctgtaacacttactttcatcacaattagaatgatttgctctgccttttctgtaggcagaaa
tttaaatct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 160847926 160847927 1000613 0 + 238918; RIP_Alu_chr4_160_01 NA NA SINE Alu Yc1 aactgatcatgtgcagtgcagcaacccagtttaaattggcctacttcacactgatagtgtcactatgggaactatcctcacagacccactagagacctgg
ggtcactatgggaactatcctcacagacccactagagatctgggggcttttcttctagtgactaatatccctcatctgatattttgctagatggaattct
aaatagggaacttctttacatcaggctaagcaggtccaatgtctaaggcagaaactagaacacataatatgtcccaaatatttacggaacaaacactgat
ctatcaaagtgctttcagaatttcaaaatacatggattttagaaaataatttttttattgttaaagatttatgttcctgtccacttaagAAAAAATTAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATTAGTagaggtaagtatgcattgccaagttaatctttggtaatgttagggagataggttttaagcatttgaacacacaaaattt
gtttctatgtttttttcattttgttccacaaggagttaatgatggtaggctgggaggcttgtgtcttccttttagtggcgcacagattacgtagaaatgt
gctattcaaagtataacctgtggacccacatttgcatctccacaaatggcttgttacagtctgcagaaatataagtagagagacttataagaaccagtga
atagaaacattttatagcaatttgatattgtcaaaacaccctactattcttgtagacccatttttatgaacgtgatatagaccaacaatatcaatcaata
taaaaatgaa Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 163451865 163452164 1000614 0 + 53704; RIP_Alu_chr4_163_01 NA NA SINE Alu Ya5 ataattgctattatacagtttagaaaacttttaaagagaaaatattgaagctagagttgagtagataaagtttttcaaagttctgagcaaatttggcaaa
ttggaattttgaattggccaaagtatcattcagctacaagaaatgggctgaaagcatgcttggacaaatagtatttttgttcaaataacttctaaagaat
gttctagaagaagaaaactgaacacagataatatgtgagataataataatgactaaattactcaaaaaaattggaattcaatactggaaaaccctaacat
ttgaatggcaatgagtgatatcatttaaatgattctaaggtatatatgttactcagatggaagaaaaaaattgtgattaacttttaagtatAGAAATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAATCTTatatatattttaagttgtaaaatctaacagaaagataatgagtatcttccagaaaggtaaatcaggtaaacagaaagcacaaaagaaatct
aagtataacaagagacaaactatattagaaatggtctaaatgtctgtcttaatgatcaaaattattacaattgaataaattaaaaaagagagagaaatag
caacgcattttactaggtgcactcaatcaatataaagaagactggccagggacggtggctcatgcctgtaatcctagcactttgggaggccgaggtgggt
ggatcaagagttcagaagattgagaccatcctggccaacatggtgaaaacccgtctctaccagaaatacaaaaattagctgagtgtggtggcaggcgcct
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 167327554 167327879 1000615 0 - pAlu4-167574198; 8359; RIP_Alu_chr4_167_02 NA NA SINE Alu Yb8 attttcaccaagacagagacaagatcccaggttaaagaaaaataaaagcagaaagagggtagcataggggaagaggcaaaatgtagctctagtttatgtt
tctactgtgtagctcagagcaatgaggcatagccatactgttgactcctgtactacacatacgcctaaccacacccataaacacactgctaaccagtaga
aaagactgtattattttcacttggtctacaaaaaatgaaagaggcatttctatggagaattttcctttatgaatgttggatatgtataccagaataaaga
caaaaaaaagattgatttctttagatcaatacaatataatctttatatttttaagtgtacaacaagtgaaaaagaataggatgtAGAAAAGGTTGGAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGGTTGGAAGAtaaacatttgggggcaagaatctagaatatggtaaataagagtaagagaaaaaaattg
gaaaatttcagaacaaaataaaaatgaaaaataacaggaaaatgtatacttcttggtcttttacacagaaaatgaatgtaatgttacttttaagactgaa
tatttaacttctaaagaattaatgcaaatttggataaatggggatatttacctccatgcttaatgctgcttttatttttatatcattccttaaacttgaa
attcttttattctacaatttcatttatacactcctttcctggtttgtcttcattttgaaatacacctcagttgtattttgggggttcatcctttatcatc
ctcctttaaatattggagttctctaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 167631494 167631589 1000616 0 - 52971; RIP_Alu_chr4_167_03 NA NA SINE Alu Ya1 agaatagagagaagtagatgaagacacaataatctcttttctaggcatcctaaatggattgtctttgcttctagtttagacttatgagtaggctgctgct
taataccctgcaggagtttcaggaaacccaacatgcctcaaattacactttcttcatttacttgctgacccttgaaataattttaacaccggtcattgat
tttagttctataattaaaatgtaaaaaattaaatgataatagcctagccatagaagaaaaagcacagtgatagtaaagactcttaagtgccttacatctt
tcttgaaaattaatcctatctgagtagaaagaaaaagataatgtactaagattatatgagggaaatacaggtacatagaaacatagAAAGATAAGGTTCA
CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAG
ATAAGGTTCAgggtagagaagacaaaaatcatgtatttcatatcaagtagatttatttaacattagtaaatatatacagaaagatatataatataatatg
aattcctgggttgccttagaatagaataaatatatacagaaagatatataacataatataaattcctcggttgccttagactaaattcctggttgcctta
gaaaattggaatcctttcttgtgccttaaaaagaaaaaaaaaagcctgaaatcaacacagaagagccaataaaaacacatataacttactcctttagcat
aattggaaaacagagtaccatgaacacaaatttgtttgtaaatagagaaataaacatcaagctgatatcacatgactgttcagagagggaaatgga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 171071174 171071175 1000617 0 + 4651; pAlu4-171419045;1104685737045; RIP_Alu_chr4_171_01 NA;NA NA;NA SINE Alu Ya5 tgtttttgcaaagctctggaggtaagtattgctttacattttaaaagggttgcttaaaaattttttttaaaaaaaagctaagaagattgggcagcagaga
cttcgtgtggtctgcaaaactatttactatccagtcctttacagaaaaatgtgctaatccctgggctaaaacaatggtctccaaagtgtggtatgtacat
tccaaagattgtgcaagataattcagtaggttcttaattatttattcttttgcattcatttattgcttatgttttataatgcacataatttttagtatag
taatagatacatataatttataaattaacatatacatacatgttttgggaataatgctcagaaattttttaataatgcactttatgataaAAAAATTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATTTTGg
ttaaaatacaaaatttatgagggcaagcgccatattctctccttccatattcccaccatctaatacacactcaatgtaatgctttttgaataaatgatag
cagtagacttaaacatttattgagcacatattaactaagctctcggaatgtaatatcttctttaatgattagagccaccctatgagttagatcttgttac
ttttattttacaaacgaggaaactgaggcccagagaagtcaaacaacttcctgaagctctcacattactagtaaaaactggaagctgagtctgatgccag
tctgactccaaagccagtgtttttaaccatgaatgacctgtctctaatttcattctttttttttactctttatgtgtatcagaatgcaa Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 172125446 172125749 1000618 0 + 7126; RIP_Alu_chr4_172_01 NA NA SINE Alu Yg6 tacaacctaaattaatgtaaaatttcatttttccttgaagtgattacacaatggtatgttggcaaatcctaaataatcagatctctagggttttactttt
gcttaaaagctctgttctatagcatttcctgattttcatgttgtaaatattcccacaagggctgatttagagctatcaatgtaacatcactaaatatgca
atgggaaagccagtgggaaccagctttaccacaccactataacataaggtttatctttcatccttctggtaattatcatcttgaagcaactttacttgtc
agttattaatatttggttctggggaaaggtaagtagagcgtcacacaataagaatcattaatactaacccagaatatctcatctcAAAAACTGACGTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAAACCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTACAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAACTGACGTGCAgagtatatctgcaaaatattttaatgagatgatgtgaatatttctaataattttataattagaattgtttgtttttgaaac
taatgcaaatacataatccaatgcagagtttagggccagatattgtgtattaaattattccaataattttttataaaatataagaacaaattatattcat
cacaaccacagtcaaatactattggaaatgtgattttcctgaatctagtattcctgctttaaaaatctctttggtccagtgataatctctgttacgcact
gtaactaatacttaaaacatactttcacaatgatttcaaatccctaaaatagaaacaatagatgtatttgccaataaagtaaactgtttccagtttgtca
atat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 178393832 178394150 1000619 0 - pAlu4-178741188; 238465; RIP_Alu_chr4_178_01 NA NA SINE Alu Yb8 ctttacctgttgcagaaggcaggattatagagttaagagaactaggactgagtatcctagctgatgaagcactgcatgttatatcttttcttttcttgga
aattcactatactcattaacatttcaagactctaataagtcctgcagtgaaaaaaaaatcaatactttctatcaagattttccaggcatatttgacacag
aatacatttttgcgtaccatctattaatatttaggaaataatttaatagaatataacatctttggataatatattctgccactatagaaagttatatttt
taaaaatttgttttaaatattatgagaatatcttgaatctttacaattctagtgaatatagtcattaaacatagatattgtataacatttAAGAATACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAATACTTatgtggtcttgtccttaagagatctacaccagaattaagattagacttagatatctcaaattcaatcgacc
atttaagttgaacttcagttctttgatttacttctctagattaaatcctttaaaggctgtttcttcctcgatattatttgggaatataaacccaatctta
taagaccagaaaaaaatatcaagtagttatttctcctttaatcacaaaacccttgcaggagataaaagattagcctcagactttctgacctataatgtta
acatattttaaaagaccatcatttcaaatgctctagtttcttttttgagcaaactgtgaaaaaacaaaaaactcttctagtatctgtcttctgtggtctt
cactacatatctcctgaat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 181554284 181554448 1000620 0 - pAlu4-181901637; 16436; RIP_Alu_chr4_181_02 NA NA SINE Alu Yc ggtttcaccatgttgttcaggctggtctcgaactcttgacctcaggtgatccaccagcctcagcctcccaaagtgctaggattacaggtgtgagccactg
cgcccggcccaagaattaaatattgtcaagaagaacgttgtagaatcagcaattagatgtggaaatatcgcattcttaaaataatattcattaatatgaa
ttatttagaatgagtaagagactatatcaattctatgagaagattctaaatttctggcataatacaaagttcttgattttactgactttttttgaatatc
acaactaacattacaactgttaactaatatcattttagaatgtaagacctatgaaaataatttgataaaagatgaacattgtAAAAAAAGGACAGCCTGT
GGTAGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT
GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGACAGCCTGTtctgtagaataaactaa
atctccagggtataagcttttggatagtttggctcatataagcataaatgaatttttgtgaaatttacatggaatatggttttaatttacatttatgtta
agctgatttgaataaaaaatttaaaaacacaagttcaaaaacaaaataatgtgcattaaagattgaaaaaatcaactttaaatcatttgtttatttgatg
tgttcagtagaacttgactctggtgctagacaacatcactttctgctataatcatgctttcttaaactatcatttattgaatattgattttttgtgaatt
gtgattacatatacatgtatataatcatacatgtgatatatctataattatatataattacaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 184991848 184992145 1000621 0 + 2532; RIP_Alu_chr4_185_01 NA NA SINE Alu Ya5 cgcttaggtctggcatcatcaaagaatgtctaactctgcttggtaatgatgaaactggtgggggtttttgaattactcttaaaaagttatttccccaggt
aagttcatagcctggatatttccccacataaaagatcaaacattccttaatctcttctctatatcccaccctttaagaccttcaggttagagaggagaca
ttctgaaaaaatccaaatgcaaacagtggtatgtcagaagaaatggtttcaagtggtcgcaacagagaaatagcgttggcaaggcgggatcggggctgat
gaaaatgatacaggcttttatatttctgcaggagttttttttttttttcattccaagcataccagagtttcaccaaagcaggtagAAAGAATGTGAGAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATGTGAGAAGgtgttgtcacaaaatccaggcatgagtgtatttctcctccttagagccagcctcttctggcaagccattggatctcttcaagcctca
gcttctccatctatagaatggctacagcagtgttacttgcttcccaggagaggagcattccatcagcagtaaagcattcattgatcttccttttgtttct
ctgtcacagcctggcatggtcccaaaatattgtagtaatcaatgtgttttgaattaatgggtttctaaatattcccatgcttcacacagaccgttttgga
tctctgaagttttgcaccgtgcagcctgttaggcagttgatcaacctgtgactaccttgtttgtggcttattttccccagccagagcagcccggatct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 190030249 190030552 1000622 0 + 8061; RIP_Alu_chr4_190_01 NA NA SINE Alu Ya4 ataaaatattaaatattctttccaaaattcaaatgtttgtatttgtaacatttattcctgatgctgtatataaagtataatgctaattaaactacagtcc
ccattctcgagtgggcatttttgttttgggttatgactggaatagtctctatttcttatgaactacgtggatttatccagtgaaacttccttcagaaatt
atataaggctgttaggatgcaggactcactgtagcaccagtatcatttcttccctaaacatgaattatcatttaaatttacttcttaaacaacgcttttc
atgagtgaaaaatggcatatgtcatatggataaagaatcaccgaatgacatcagtgtatccaaaaccattgcggaaagataacttGAAAGTACTGGATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCAGTGACAGGCGCCTGTGGTCCCAGCTACTCGGGTCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTCGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAAAAA
AAAAGAAAGTACTGGATTAagtctaacgccttaagaggaggcggatggtttacatagtccttgacactggaaacatgtctcaatgacactgtatgttttc
tctctttagttttcacttcattttgatccatcgcttcatgtgaattaaacaatgggagcaggtggtatggaagtcctgatttgaccacattcttctctat
gacatgtcttaaatttcatgagtttcctgtgtaaactctctttggcagaccctctggatacttcgtgatggcaaaaacacatcttactctggtaaaatat
taagggtgttcctcgaatctgaataataaaatggcattgagatgaagtacattaatgatgcttggcagaacaacagtcagggtgttttcaaggtattcct
cctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr4 190206690 190207024 1000623 0 - 237921; pAlu4-190554038; RIP_Alu_chr4_190_02 NA NA SINE Alu Yb8 ggatctgtgggctttagttttctcaataatgaaatcggagggtaagtcttaaaagtgtgtaacttcacttttggtttttaaattatggccaaataatatt
atgagaaactttatatcatataatcattagatttgaaagaaaacagatattatcgagtaataagatctagtctctatattgatttgattcttgtttaatt
ttgcacagactatacctatggaggaaatgaaatggcttttgttgtaggcagatatttatattattttaaactgcagggatttgcagtaaatgagggatta
taaatatgtacgtgggaaaagactggatattaaaagaaaaaagaactactcaaagataaaatggatggcaaacatttttttAAAAAAATCTAGCATGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGG
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTAGCATGCTCaagaacatatgtgatagacaaatcagaaatcaggaaagtcaagaat
ggtgaagcttgtaaaagaaaagagaaggtcctgtttaagaaaaaaagagaagaatgagtagtttcaagagctagtatatcatccaaatgaagctgcgtga
ctccaccactggctaggagtgtgaccttgtgacaaatacttaaccttcctaaacctcagtagtttgttgatgatcatgatctctcatgaaaattctctgt
gggacttgcacaaacttgatctttaaaaacatagctccattgttatgaatttctcctaacactgaaaacagaaaggtaaagaaagaagagttctgaatag
gcaaaacagacaatacacctattttaggagataaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 190528426 190528731 1000624 0 - 4965; RIP_Alu_chr4_190_03 NA NA SINE Alu Ya4 ccttcacagaaggggagactgaggctaactgggggcgtgtccttcccacactctcccaaacccacagacctgaactcacacgggaatgtatatcttgggg
gtaaccaaaggcttttcaacaggtgcgagacttcgtataagagagatcactttcagatcctagcttcattttagtttctcctaaaattaatctccctgag
aacaagcctgacatgaaagaactggcctttcctttcctgcctccccgttcccagttggaaagcacgtcttcccaggtatgaatctttctgggagcctgac
ccaagttataaaaacctggagtagccctaaaggaaggacgagggatatcactgttgagagagttcatggctctgatgacgactgcatGAAAATGACTCCG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAATGACTCCGatgactgcgtgaaaatgctttcgtgggccaggtagggtccacttctttgctctggaggagaagctgctagataattaccta
tgattgttgttaatgtaaatgattatggaattttcagcatatacttcaaaaggatttaaaaccattgagtgacgttgctataaacaaactccttcaattt
ccatctacttgtttatgggaacaaggttttagaaattacatctataaaagtgaaaagtaggaataaaacggatgttgaatccgacctcattgtagcagta
acatctgtggaaatgtgacccactggaaaaaataagctccattcatctcatgaagagatgcatttccaataataactgacttcaggtttatcaatcactt
aaaatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr5 9464774 9465074 1000625 0 + 20788; RIP_Alu_chr5_009_02 NA NA SINE Alu Ya5 atttagctcagccactgggctcaagtagacaaataggaagtgagttttccatgtgtactctgttccttatctgcacagtgggtgccctctgaactgagcc
tcatcagaggctatgtgtctcagcccacacgcaagcaacgtgcatgctgcctgaagtggaagcaaaagtgtgttgttagttgcgcacccatagaagcaca
cctgagcctccctatacagtgcccaactagaagaggctgagcacttccctcctgtcatttgtagactgatagtccagtcccatcattaccaggtctcacc
cactgccagaaggatggctcgtcctcagtcccatgaactcagctgtgctcatgagttaccaatgaggaagggatgaaaggagaaaatAAAAATTAATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTAATCTTgtatccacaaaacataaaaactcacattaagtatcccatcatgattataaaatatcaccactcatcacctataggaggataaacta
aggctagttaagggtaaatgatattgtgactgtcaggactagggcatttgtttagaatgacatagaaggtcttagctaaatccatgcaaagtgttccccg
aaatgaacgttcagtctcctccaggaaggtgattccccgtctcagtaaaacataggtagaaaaatcagtcttatcatgggttacagaataccctttcctt
tctacctcccccttctgcttgtcctaattaagtcctcgaaaattaattgtataaaaacaaaatgtagtctaccacttattagattatcctatacccaata
g UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SEMA5A:NM:003966:2/23
0 chr5 25813079 25813387 1000626 0 - 5105; pAlu5-25776807; RIP_Alu_chr5_025_01 NA NA SINE Alu Yc1 tgcccggctaattttttgtacttttagtagaggcagggtttcatcgtgttaggcaggatggtctggatctcctgaactcgtgatccacctgccttggcct
cccaaagtgcctggattacaggcgtgagccaccgcgcctggcccctttgcctgtttttaatcaggttatttattttatttttttgccgttgagttgcaaa
gtttttaaatgtattttggatataacccttatcagatgcatggtttgcagatttttttttcacatttaatagtttgtgtcttcacaccggttattgtttc
ctttgctgaactgggcattttagtttgatgcaattctatttgttcattttttcttttgccacctgtgcctttgaagaatacgcttAAAGTTCTGGGAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTTCTGGGAAAAacacaagaaaacaaaaacaaaatccttccaaccaagaatattaatttgtttttagtttaagtaaaaccataagatt
gacttcagccacagacaaaataattacttaaaagctttgattcaatttccaataatatagtttctctctacaatctgtgtaaaattaagctccatttaac
ttttaatgtaatcatactgtacttggccacaaattatgagtattcatgcagatatttgcaatgagataaaataattttggctatcgaaatttttgaatgg
actgctttgcattgtttttgtaagctcagactttcttattataattttatagaattaatgcataggttttggaatctttgaatcactgatcacacctata
gttttcttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 33391333 33391651 1000627 0 - Yb8NBC419; 16571; RIP_Alu_chr5_033_01 CATCTCCTGGCAACACTGAG ACAAAGCAAGGGTATTTACAGC SINE Alu Yb8 gtaagagatgccacatactataattctgatgacatcaaaaggttcagtggatgtattcttgaatattctctggacatatgtaaacattttgaatatatca
caactttcatttttcctaataatggaaaattaaccatgcaattaaatatatgacagtcatggatgacttcataaagggattttaaactgaattatagcta
ataaaaaatacaaagcaagggtatttacagctactatgaaaaaattacaaagaaaacaataaaatcatctttagggctttcttattaaaattagtttttg
ctgtctaaatgtaaactttatccttaatttaggttttgttattagcaaattatgttttaaattaattggtggtgtcaaaagtatcattAAAATGTGTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAAAAAGAAAAAAAATGTGTTAAaaagatattattgattgagcactctgtagtctcagtgttgccaggagatgtatttggtttaactgaaat
ataagatatttttgcctttagttatttatagccttcttaggtaaacgagagaaaacacatgaaattatgaaaaaagagtcagtggcgattaagtgacata
ctgtgtcttacaatcactacttggataaataattgattggtatgagctgaggtagtttgtcttgtggttcctgatagagtttctaaaattaaattactat
tccagtatcttcttggacctaaccatttggttaaaggtcaaattccttctgctacatatcagaaattccgtctgtaatttttatttgaacatttccctac
ctttttcaataatgtattc UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 572 241 NA intergenic
0 chr5 37329577 37329887 1000628 0 + 238457; RIP_Alu_chr5_037_01 NA NA SINE Alu Yb9 ctatgcagatttagtctgacatcataaagagactaaactagcagtaacagaaacttaattctaggtctggcttcaccagttactagccatgtgacttaag
caggttatttaacatctctgctcttgttttttgcaatataagatggagatactacagttacctgctcatttccatcacaggctaatgttgtaaagcactg
tgtgatgctgctataaaagacacaatctactttgacaagtttttatttggatcttttatccttagcataaaaattacaaaacatatagtctgataaggtt
cagcagggtgagaaggatctttaagcactgatattttagatgaggttatagtaaataaatacaatgtaatcttgttctttTAAAGCAAATGATGATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACGCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATAAAGCAAATGATGATTCTTaatgtaatgagtttagcccacaccttggtttagcctctttcaccaagagtaaagcatatttattaatat
tcaaaaataatatttcattttaatcatgatatacaggaaagcaactctcattatcagtttaaaaagtcaaaagcataatttccaagactcaaccaagtgt
aattagactaagtgataggatacaaaaatgcaatcaaaataccccactctatatctacaaagttactttaattaaagaaaataattttatgttatttaat
attttccttacccgtgatttgaacaactgatcataaacttctagtagtctaggtaatggtactccaatttcattcattgtctgtattacgaagcccacat
cccagttcaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:NUP155:NM:153485:33/35
0 chr5 52267546 52267862 1000629 0 - 3878; RIP_Alu_chr5_052_01 NA NA SINE Alu Ya5 tgaactcactatccagaggtccttccctgcttaaaaggtacaactgaactgggacaaccagatgcagttgtccccttcctactgctgaagcataatctgc
aggcctgaaacctatggcatccctgtgcagcttctttagctgggtagggaacgccttgatctacatagatagacccaaggaaagccagtgatctacccaa
ctgagccttccagactgagagctcctcagatctgaagcagtttcctgggtttgtaaagacgaaatacatcctttaattctggaattctggaggttcctga
ccagctgcacctggacccttaaacatgctccctaactcttatcttcttgatttccagtcaaattctgtttcctgatattcagttAGAAATCCTGTGTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATCCTGTGTTCTgtaattaccatttttttctgattaaaaaatgttccttgtagaaacattggaaaatactgaaaataaa
cgtttcctatacttcaactaccttggtaacattttagtgtaggttacctgtcctatttgcatatatgcatatttataaaatttgtaacacaataaaatac
agttttgtaccctgtctgtaaaatgtattatgctatggcattttcctttaaatgtataagtttattgagaatatgactgttcataacaaccacaatatca
atattgttgactatgtgccacatgctgtgctaatcttcttatatgcattattgcttttaaccctgttaacaactgcaggaagcagatcctcatattatct
ttgttttatctatgagg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ITGA1:NM:181501:23/29
0 chr5 64058899 64058900 1000630 0 + 16397; RIP_Alu_chr5_064_01 NA NA SINE Alu Ya4 attgggaactatctgtattagaatttggaagactatcagatatcatttcctgtgagcaatccatcttcctgtgctagaataaatgatttaataatacatt
aacagaaaaccctgagctctaaattcctatttgtttttatattaaagattattagttaactcctaacgcttgaaagtgggctacttttccaatttataag
atacctgaaatattaaaatacatgtattaaatgctctataaaaactacaaagtggcagcccctggtttctacaacctattctgtatgagaactgggtcta
aactagaaataattatggttaagtgcttttaaaaaatgcctgtatgtgcaaatttatgctagtatgaatgaaactgcacgcattaaGAAAGTAGTAAGTG
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG
CTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAAAGAAAGTAGTAAGTG
ataacttctttaaccagttagtttttaaaagagttaatagtaaaaatgcacaggtggccgaagactggaaggaagttgtgatgctaaaaattccttcagg
tctttcacaaccctcatcagccaccatatatatatatatatatgaaactgtcaggctaaatacatataaatacaaaggtgtgtgtatgtgcatataatta
catatatatatatatatatatatatttttttttttttggtgggcggggggcagatagggtcttgctgtgttgcccaggctggagtacagtggtgtgatca
tgtctcctgggctcaagcaatcctctcacctcagccttccacatagctgggaacacaggtacatgccaccacacttggataatttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SFRS12IP1:NM:173829:4/5
0 chr5 75471437 75471537 1000631 0 - 52811; RIP_Alu_chr5_075_01 NA NA SINE Alu Y tcctagaaggtcaaacaaagcaaaggggcatgggaggaatgaattctgtatatttcaaggaattccagcatccaagtaaaaactacagaaagagaagctg
aaaacatgctcaagatctaccagagatattttctgttttattactattatatttctagagtccaaatagtgcttgtcacatagtagatgctcaataaatt
ttggttgagtgaacactctagctatcaatggaagatataggaatgccaagtagtctgacttggtacagttgaaaggaaagttttaagtaaaacaaaaaca
actactccatttctatccaaaaatatatcccagatttgtaaatatctatatttattctagaattatttagaaatattttaaaaACTTTCAAGAGCTTCTA
CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
TACTTTCAAGAGCTTCTAaaaatggaaaaaagtcaagtaaaattccagttatatgtaaaagtattgtctttttaatgctttgatattattggtctagctc
tgttttcgtccagtataccaattgactctagctaatattgcagatgttttaaagaaaacctagtatctatgaagttggaatatttctccaggaaactagg
tgaacacccaagtaggtctcccaggatgcaagactggtttggacctcagtcttatatgttcagaaacccgatatgtcagcacactaaagacagatctatc
tcttagaagcagtctcccaatggtcaacctcaccacgactgatagaaaaaaacagaatgccagttggccaattaaaatgaaaaacaggactcccaagaaa
a UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SV2C:NM:014979:2/13
0 chr5 79049468 79049765 1000632 0 - pAlu5-79052320; 4235; RIP_Alu_chr5_079_01 NA NA SINE Alu Ya8 ttagatttgcatgatgctttattctctcaagcaatcacagtgcactaacgggaagtatataaaacaaaagaatgtaataggtcggatatctttctcatga
agtcttttagaatgcattaaatatcaattgttattaaaatgggaaagtcacctatgatcctgcttatattacaagctttgaaagatatattttaagccat
aaaacaccaagaaagcttgtgatcttttaatacaaactgttagtgttttatatgagtcttttaaaaaatggaattcttaaaagcaatcattaactctaca
attaatatttcaccaagaattaatttaatattaatgtgtttagctgaaaaaaatatgcattgctgaataacagttcagcaaactataatatAAAATAGCT
GGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AATAGCTtaggttaaaaggaacttttatgccattagggagttaagaaaaaatttcatgaaaccatgaatgaataaattgttacacagcataattatgccg
taatagaaagtgttcattttgtagatatactaaaggccattcaacatcattgtggatggaaagaataaggatcctgttatcacaatgatcaggtacttta
gaagcctggaagttagggccctctactatttgaaacctggttatcttcccattcattaactctataatccagccaaacataggcttcactcttcatgcct
ttgctgatatctttcttttcacttagaatgaatcatctttgtatattttatctcttatttattttagagaccagctcatatatcaacttctccatgta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CMYA5:NM:153610:1/13
0 chr5 79592955 79593258 1000633 0 + 12749; RIP_Alu_chr5_079_02 NA NA SINE Alu Y aggttgggagttcgagaccagcctggccaatatggtgaaacctcttctctactaaaaatacaaaaattagccgagcgtcgcggcacatctttaatcccag
ctcctcaggaggctgaggcacaagaatcacttgaacccaggaggtggaggttgcagtaagccgagaaaacaccactacactccagcctaggcgacagaat
gaggctccatcttgaaaagaaaaagaaaattaaaaagaaacagtctatacaggctcattccctttccccactcagagttttttcaaaggaatgtggccag
atctggaggtttacctgccttctggctctgaggactttgcagttactatttaaggtctggttaatagcttcctttgcatcgtggttggttAACAAGAGTA
GGCTGGGCAGAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCGGGCCTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCGGCCTGGGCGACCTAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAACAAGAGTAgaggtaatgttagcagacataacacgaaacagtggcaccttaatttttattttaagtactctgcagactttttcaggggagacttg
atgttcataacacgtagataattttacagtcaagctcttttgatgtgactttttcagtaaccagcagtaacagacctgttttaataagactgtatagctc
ttggcagaccatgtgaaatatttcccccacaaaaattttcttaaattaactgaattagctccttttatacaacataattatatataagtatatataacat
aaatatctagcttataatttgcttttttctcctcctgaatttgaagatttttttggtagagttcaatgttgagtttaaaaacaccacacactggctgggc
gtgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr5 80786913 80787227 1000634 0 + 17409; pAlu5-80789769; RIP_Alu_chr5_080_01 NA NA SINE Alu Yb8 tgcagaatgagaataaagaattgcaatagtattcactgaggaggacaagaaaagtagctaaggaagagtgaaaaaaacaaactgctggtaaagcatcagg
gaggacctggctgaggctgaacatcacagatcctaattataacgtgttaagtataaggatagaaatacgcattaggcattgtggaagaatcaaaggtgtc
ctacaaatatttcaaatttaacgttcaaaaaaaaacaaaaaacaaagcccccaaacctcattgcctacctttacacctgcttcttttcctgtgatcctag
ctcagttgtgttattcccattctcccagctacttggattcaaagagttgaaatcaccttcaaaactcttaccttctctttatccctAAATCCTCCTTCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATCCTCCTTCTAaccctaccctatactttatattaaatactcattaagatgaaatgaaaggtaaaaatgaagatgtagaagat
aagcaaaattagaggattagaaagtcaaacacagaatttgaagaacttattatttgacagagaataaaattaagggccacacatactgtctggctaatct
agacagatcactcaaaaactgtgatgagaatccaaatattctgaaatattctgagtcccaatacccatgattgtggtgctgtggtagagggcagagaagt
aactagaggactttcattttgttaaatgatctgtaacattttagataagtgcctttcttcaactgtgaagtttaaagctatcttacaagcactggtttac
tagaaataagggaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SSBP2:NM:012446:10/17
0 chr5 81218247 81218578 1000635 0 - pAlu5-81221117; 19522; RIP_Alu_chr5_081_01 NA NA SINE Alu Yb8 ggtcagtttattgttcctgatcttctcagtgatgtatagatatattgcatagggaaccccggtgactagcttactattccgtgcagttagcggggatccc
cgcaagcagctctgaggccctaagagaagtccagcattttactatatcttctgccattagcaagttttcttaaaatctgcatataatctacttaaagatg
tcaaggctgtttctgctttattctgcaagagacaatttttggttttgcaagttctagtatgggtgggtggtggctatgggagagactgcacatcacaaag
caaacctatttctggataatagcagaggaaaattttgcagattccatactggctggtctaacattgcacagctctgtgtaactgtaaatAAGAAAAGCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGCAGtactaaagctacagatatgcctttatttcccccagcttttattttgaaagattacaa
agctacagaaaagttccaagaatagtgagatgaacctccatataacctttatctagatttcccaattactaaacattttgttacatttgctttctctctc
tgtacatatgtataggtgtatttgtttatgtgtgtatatatatatatatatatatatatgcttttatatgcatacacattattttgctgacacttttctc
ctaataataaagacattctcttacataaccgtaagactggaaatttaacattgatatgataacattacatattacaggccatattcaaatttcttcaatt
gtctcttcaacctccacctcctgggttcaagc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 82192489 82192787 1000636 0 + pAlu5-82195345; 401; RIP_Alu_chr5_082_02 NA NA SINE Alu Ya5 ttctgtacatgtttacatgttccctacatatccccttaggaggacacagagaaacacttccttgttctgattcttactttgattaacatttgttaagcac
tcaatttgtgcagagaactatgtgagacactggagttgaagagggagaaggaagaagatgtacaaggagacaatacaaggtccaaccatgcaaagaagtg
ttgtatagttttaatgaaggagataaaattgtacacagatactacaagaggcaatgaaaggaggaattaagatattctgaatgatgtaataattatagaa
atcactagcttcaaattgccaaatcagaacattacagttctaatctactgggatagggcaggagagcagtacagagggaatgttAAAGAATTAGAGCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAATTAGAGCTCTcaaatagaaatgaaagtgggtatgacagcattctatacattccagccttttcaacatcatggtgtatgtgcatagacagataaat
agataggtagacataattttatttttacaatgcctcgaggtgtaaaggatttgtgtcagaggaaaacaagtcaccagcgacctaggccttgtccagctgc
ttccaaggttaacaggactggtgcctctgaggcccaccatacccactgggaagctctgcatatttgagacatgctccttacatggattttcccactagag
agtcagaatctcaaatataatatgaaggaatgttggcccaacatagttgaccatggtacatgtgatgtggcatggttagcaaggcgatatgagccggga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 90610459 90610742 1000637 0 - 5344; pAlu5-90613324; RIP_Alu_chr5_090_01 NA NA SINE Alu Yb9 gaccgcctgcatcaaaagcgccgcggtaaaaatgcagattcttgaagctcacttcaaattacagactcagaatgtcctggctgggtgggggcatggaggc
acctgtctgaggtcggggcctagaaataatccatcgtattaaccaactacctatcagtgattcttaggtacatttaggtttgacaactatagcaagaggg
cgaggatgtgagacattatactgggtagactctaggactccttacgatatagaacactgtgttctaaaattgatgtttaagttttgatggaaggaaaaaa
tatttccaaatttggttttatatattatattgtttgctttaactgtatatttatatagacaaatttcttttctttttttttttttttctttAAAGAGAGA
AGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG
CGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC
TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAgtctttc
tgtgttgcccaggctggcctcgaactcctgggctcaaggaacccttccgcctcagcctctccagtagttaggactacaggcgtgcaccaccactcggctc
tttttctttcttcctttttatttttatttacttattttgagacatggtctcactctctcgcctaggctaaagtgaagtggtgggatcttggctcacttca
gcctcaccctccccagaatcaggtgatagtcccacctcagcctccccaggggctggggctacaggtgtgtgccaccatgcctgaataatttttgtatttt
tttaagagacagggtttcaccatgttgcccaggctggtctcgaactcctgggctcaagggatccgcctgcctcggcctcccaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 95369083 95369421 1000638 0 + 32645; RIP_Alu_chr5_095_01 NA NA SINE Alu Ya5 ctagtagttcctgctcaaagcaggaaatcttggaggtggtacagagtgttcttttcattgtatgtgcagattaagcttccctaagaataatgctatttct
gggtgcaagactggattaaccatccttgattctgttgactttcactgtgtgaagaatgactaaataaatttcatttctttggctatttctttgacttttg
aatttagttataactcttttgcaggcttttatggacagaatatttgtatctccctaacattgctatattgaaactctaacctccaatgtgatggtatcta
gaggtgagccccttgagaggtaattaggtttagatgaggttatgagggtggggctctcgtgacgcgatgaaattagtgcccttttAAGAAGAGGAAGATG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGGAAGATGtgcggcactgaagaaaggccatgtgagagtgcagtgagaaggtggc
tgtctacaagccagaaagagggccttcaccaaaaactgaatcagctggcatcttggtcttggacttcccagcctctaaaactgtaagaaataaatgcctg
ttgtttaagtcacccagtctatggtattttgttatagcaacctgagctaagatgcagaccttctccaacttctccagttttttgattaaatgtaaacaga
actgggcaattatcaaacctttatcaatattgagaatatggaggtgaaattctcctacttcctttatatctatcacctgttcacttttcctgttactata
ctctaaaaccaaatccaaaaatatatgatttttgaagac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr5 97871851 97872150 1000639 0 + 8484; Yc1RG194; RIP_Alu_chr5_097_01 GGGATTAGAAATGCAAGTTTGAGC AGACCAGAGAGGATTTCATAGGG SINE Alu Yc1 catttctctgatcacagaattaattattttgatacctttctttaaataacagcatcatcaaaagctgcatattttggcaatcacttatagattcaattat
tggttacctttgattgaacgagtaaccagaatgacaacagccaaggttgttttgttcctattgcctttgtgagcctttcctgggttttacatggtgacat
tcaaactggccgtaacaaggcaagtacagttactgtacccattgaccatggactactcttacttagaagctgtttttgagtaaattccaatgtgctacca
aactttaattaatcaatttcctgttatatttttgccagctatataaaaaagggattagaaatgcaagtttgagccacctcccttaAAAAATGCAATACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGCAATACAAttgcaacttgccacacaacattaccctatgaaatcctctctggtctcaaaattatgaatattaattgtttcatccagtaccttat
gttcctaaaatattttacaatcatgtttagttaatcctcataaaatcccatttaggcgtgccagcatttatattctcatttcataaagcgaggttcagaa
aaggtaaataatggtataagtggttgagcaagccagttgaaaagtgagattgaaagtctgtgtagccattctcctttcagcagctcactgtcttccctac
aacatttccatgttaaagtgctccagtggacaaattttctttcctgtatctccagggccttattgggccccaaaacctttatatttgcttggtaataggt
UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR;C:Reference NA 65 411 95 NA intergenic
0 chr5 99202229 99202527 1000640 0 - 16142; RIP_Alu_chr5_099_01 NA NA SINE Alu Yc1 aatttgttccatattaaactgtagcttgattagtgcaattgaataaaatgatattattaattacagatggaattctattctacaaattttataaagaaat
taaataaaatctttctgttattattactgtgcttactatatgtcattaggtctttatttaggaagattagttttgttaatatcgatttaacaagctgtct
catgtaaattaaaatattttcgtgatgtcatctctcactggcatcaagaagggtttttatcatatttgacactgtaatgaattttagaaagcttagagat
atttagaattactgatataattttaagaaatcagacatagcttttgatgttttctctaagatgagtatttttattttgttttgatAGAAAATGATAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GAAAATGATAAAGAaattttcaggtggttttaaagactgtatgaacaatgtacagcaagtccacttgttttataaggaatctcataccctggatgcttag
ttaatttctatttgccactttagatactctcaaacttcagtaaattttttcacccagtaataggataaatacattatgctttggtagtaaatcacatgct
tacaaataaaattaaaatcaactgaacccccttatgtaaaataatttttaataataatgtacactaaagatgcttactataaataaaagtgtagtgtttt
gaggtatgcttaatggccagcctaccctagtttcattctttagtcttaggtgttttctcactattacagtgtttgtcaaactggcattcctaatgagga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr5 99951447 99951737 1000641 0 + Yc1NBC50; 12923; RIP_Alu_chr5_099_02 GGTATGGGGCCAAATTTAATCCA TCCAAGAGAAGCCAAACCTACAGA SINE Alu Yc1 tttcacctacattttattggccaaaacaaaccataaggctgcacccaagttctacaaggcaaggatagataattctttcgcaaggaagtaaattggagta
tttggctatccacaatgcaaacttatttttacctatatgccaactggctttccatagtgaatcaagtcaccatgatgtcagtgtatatatatatatatat
atatatatatattgtgtgagcagagactaaagtggaaggtatttgttcttctaaaggaatcggcctctcttcagatcccactaatagttaccatgagaaa
gtccttgcctgtgttgttagctcttagtttttactttccaagagaagccaaacctacagatattgtgtatgaaatatccctaatttAAAATGTTATTAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATGTTA
TTAGCacagaacacatatttggattaaatttggccccataccttatattttatgacatggaaaaaatcatatactgtagtatcttggaaataataattta
tttaataactgctgtcatttataagctagctttttcattaacactcattagaagtaagaatcaaagaataagaattctgataagtggctgggcgcagttg
ctaactcctgtaatcccagcactttgggaggccgaggtgggcagatcacgagatcaagagattgagaccatcctggccaacatggtgaaaccctgtcttt
actaaaaatataaaaattagctgggagtggtgatgtgcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacctg UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 406 101 NA intergenic
0 chr5 101011953 101011987 1000642 0 + 32574; RIP_Alu_chr5_101_01 NA NA SINE Alu NA agtagagcagttgtttgtagctgctaatggattaggacaaggaaaggggagaataatgagtgtggtctgtgcctccagtttgttggaacaacattgcagg
aatcccaatggctttatgctttctgacatttggatttactttaaagagatttgtcccaggatatctgccttccagctgcagctattttagttcagcagtc
ccaaactattttggaaccagggactggtttagtgggagataatttttccacagatgcggggcagaaggggaatgatttgtggataaaactgcaccacttc
atatcatcaggcattagttagattctcatgagtacacaacctggatcctcacatgcgtggttcacaataaggttcatgctcttAAGATAATTTAATGCCA
GACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATTTAATGCCAtggctgatctgaccagaggcagaactcagcccaccacccacctcctat
tgtgcagcctggttccctacaggcaatgagcaggtacaggtctggggcctcagggttggggacccctgttctaatagaaatgctgaagtgctagtggtta
ggaatataggaggccatatgagaagttatttaaatagagcattacttacaacaggtaataagttcagtgcagcagccctcaaagaaagcatttcaaaaaa
taagcaaaagagtttcatgcaagagatagacaaaatttggtcatataacatacagtgccaaattacatcagctccaaacaaagaggaatttaattcaccc
tgactctaggtgactctaccccgatccctttctgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr5 109078905 109078906 1000643 0 + 2455; pAlu5-109081855;1104685722827; RIP_Alu_chr5_109_02 NA;NA NA;NA SINE Alu Yb8 ttctgtgaggtttggctttatttagttttttgttgagtacttcttgagtacctagccttgttgtcatccatgataagggaacagcaaaaaaaaaaaaaaa
aaattatttttgttgtgtggtctaaatctgggctggacagaaaggagttgcagagcaaccatggaagtcaggcagagcaagtcaggagggtactgggaga
gctgcaggactgaaggaagaaacagacactgctaacacatcctcctgcccagcttgtttccaaagatttgtcagcttatccttgagaagattttatttta
tttattaaactcatatattccatagggagataaatattattggcttaaaatactttgtattgactttcatataatttgtttggcctttAAAAAAAATTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AACAAAAAACAAAAAAAATTTAggatgtgatttttgcagtctagttttaacataatttaaattttacaaaaggttgtttggttgtgttgtcacatttaat
attatagagactatgaagaacaaaagtaaagttttagtttttttcccaccgttttttcctttgcatcccaacattattagccagaaggaatgctgcattg
aaaagctagaaaacaataggatacataaaagctaaatctcaattttaaaatttttctcaatttttagatgattatgcctggttgaccctgttgtagtttt
acttctaggataagataggtagatataacatatgctacatggcagaatagctatagatagatatatttttgttcaggcatagatttttaatatacatgag
atttactata Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:MAN2A1:NM:002372:2/22
0 chr5 112909330 112909635 1000644 0 - 239016; RIP_Alu_chr5_112_01 NA NA SINE Alu Ya5 tgagaagtgaatgattgagctactgtaacattttagttttcctcacatggcttaaaacattagaatactggactctgggaaatgtacaaactgtacataa
gagcagaggagagacctgagtctacacaggatgaccataatcaaattaacagtctagtattcactaaagaaatatcaggaagaaagctaaggataatact
taaatacttaaaatgcatcataaatattttaaagtcactgttttcagaatttaaattccttaactttcaagtaagattgctaaactcttcagagtaaata
ttttttaaaataatggaaaaagaaagaacgcaagaaaactgcagatgaacaaatatctacactttcaaatccaaaaagttacttttAAAAATGGAGATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATGGAGATCAattatttttcaaaaaatcaataatgagggcccagcacagtggctcatgtctgtaatcccagcactttgggaggcaaaggt
gggcaggtcgcttgagcccagaagttcaaagccagcctggccagctcttcaacaaaagaagagaaacaggttttgcagaagagatgaagtattcagtctg
gggcatattagaagtatctaaatccaaagctctggaggctgaggtgggagaatcacctgagcccagaagtcaaggctgcagtgagccacaatagcaccac
tgcactccagcctgggtgacaaagtgagaccctgtttcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaagaataatgagctttaa
aaaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:YTHDC2:NM:022828:10/30
0 chr5 114119982 114119983 1000645 0 + 20676; RIP_Alu_chr5_114_01 NA NA SINE Alu Yc1 taaggattgtttgatattttaaaaccttggtaacttacaatatcaacaatatattccttggttgatatcactataaactctctcactggaagattgcttc
tattccttcaaaaacacacttagaaccctgcttcctggcagatagtagggacataaaaagctgagtcagcccggtagactttctaccaggagaataatta
ctaactggcatgcagcctgcagaaaaaaaatctatgagggtggaaactatcatttacagggaacctaatctcaggagtaacagagttaaacatggtgttc
tacatttctattcttgaagcgacccagggctaacacctgccaaggttttaaaacattataaaaggatatttagtaatggagAAAAAATAATAGAATATGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATAATAGAATATGTtaatgtcatccccattttattttttaaatgtgatagagattgataatatctagataactagacaaactaatggctaaaag
aagcatacaaactcaaatgccaagaagcatgcaaacacaaatcaaaatttgaggatgaactcaccccttgtgaagttttcttcctgaaagacctggggtc
cagaattgttttttccacaacacttaaaaatgtggctaaagcttccctatttatttccggggcaaagctgcatcctgtcccatgctatatctcaaaaatg
agaagcagaatccgtacttcccatgtttggtggtcacagtccacctctaacaagattgtttataatgatgagaggtgttccaccaacaaggctcttttgt
a Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr5 115922048 115922356 1000646 0 - Yb8NBC597; 238944; RIP_Alu_chr5_115_01 TGAGGTGTTGCAGACGATGT CGCATGCTTTAGAGAATACCC SINE Alu Yb8 ttgggaccactcttcaactttagggaggttcataccataatatgaggtggctaataggaggaagacggaagcacattcattgcatctataaaaaccactg
ttaaaaatgggcaggaggaccaagcgctaaatgatctgttcatgtaaaaatcggggcatatatggagccacctagttcctgtttatttcattccaaacaa
ttttactttatgaaagtttttaaattctgaaattagatatacatgtgttctccctctccccccggctcaatgttgggcatatttatatgagtgtttgtct
cttaaattgccatgtgcaactgaggtgttgcagacgatgtaattcacaaaacaaataacgcttaaattgtgttgtttttatactatttAAAAGAATCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATCCTTaaatgatgggtattctctaaagcatgcggggcttaaaacctagatgatggattgataggtgcagcaaaccaccgtggca
catatatacctatgtaacaaacctgcacattcagcacatgtatcccaagacttaaagtaaaagtaaaaattaaaaaagatgggtattctatatttatctt
tcatgttacatttttctttgtggggtttctaaataaaacttgtaacatgaatgttttattctcattctgtattttaaaaagaagctgagtaacaaaagga
aaacaaaacaggattggaaaatcaactattttcagggggctttaacaaactgaatatctagaaaggttctagagaacctttatgaaactgtttgtttgga
tgtcttatt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 429 108 NA intron:SEMA6A:NM:020796:1/19
0 chr5 119043057 119043363 1000647 0 - pAlu5-119045917; 4754; RIP_Alu_chr5_119_01 NA NA SINE Alu Yb9 taactttttaaaaagcaaatatttaagggccagtagaatccacatatcttccatacggatttatctaatgtcaataatctacatttctttgcatcttagg
aagtagtattctcaggctgaatcgcaataagcctccatggtaatcacatcagttatcaataatttcaattctgtggggattttttttagcttagttaact
caaatataaatccccatattaaatattctcaaacactatgttctctggctttatcactagaagaaagttgtaccatgctttaaaatataatgaaatacaa
ttttttaagagtggcatttttagcaccacttttatagagcacttggtgcaggaatcaaaattattagcagtgccttttttgcttgttAAAGAGACTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAGAGACTTCTCacttttggctgatggctgcatctctaaatagattttacactccctgctcagagatggaaaagcacatacagctctcttca
cattcaaataacaatctcttcactcatcaccaccgaagtccaatacccatccagaacctatcaaattaattaccaaagcttttctgctctcaggttctca
cagataaagcatgcctgtgagggcattttacacgttttatcccactattccacaggatagtcttacattccagaatgtacctaaatggacttaaaagttc
ctctcctgtgatcctgtgaattaatcataatgactgccctggggaaaaaagagagtcctcgataggagagatccaaaaagaactgctgcttggtaaaagc
tccaggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 122302253 122302562 1000648 0 + 7013; pAlu5-122305116; RIP_Alu_chr5_122_01 NA NA SINE Alu Ya2 agaggaggaccctctccccagtgagtttggacagttcttagctattcatggtcaaaaaaaatcctagattttccaggattctctcttctctcagtttctg
cagctctattaataattttacctattcttataattatataatgaggtctactagcattaatagaatagaaattcacaaatctctcaattttgaatattgt
tggcagccttgttaaaatatttgagacaactttacagggacatagagataaaaatagctttgtggagcagagttttatttgggatacactgtctaatttt
atgtattatcaaggggatagcagctgctagaagtctcctttacttgcccccttgtgattgtattcgatttggcaaaaaggtaactttAAAAGGCAATGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGCAATGAAatacaaataacaatggggtataaaaataaacataaatctgtaattttgactgtaagattgtgtgctaagaagggttg
aaatgggtcaaaaatttaatcagagtactcaggcttgactgactgctgctgccacatcaacaaccttacccttttattgcagttttggtaccctcgattt
ccatatttgaatcttgtgacatgctttgaatgttagagtttaacataaaatattttccctttaaatgtagttaaatctgttgttacttaattctcttgaa
atatttaactatattacccctccaaaaattagatttgtttattagcaagcatgtatgttgccttgttttaataggtgtttcttaggtttgtttaggagtt
gtagcccctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SNX24:NM:014035:2/7
0 chr5 128342755 128342756 1000649 0 + 238115; RIP_Alu_chr5_128_01 NA NA SINE Alu Yb8 aggtataacttaaaaatagaaggcaaaatcattataaagccaataatagaatgcatacatgatgatggtcccataagattgtaatactctattgtacctt
ttctaagtttaaatatatttaaatacacaaacacatattactgtgttagaattgcctgcagtgttttcagtacagtaacatggtgtacaggtttgtagcc
taggagcgataggctatatatcatacagcctaggtgtgtagtgggctatatcacttaggtttgatcaatgattatcattcagtcttgtgtgaattaaatg
taaagaactcaacagaataccaggatcataaagtatattcaacaaatggatgcaatcattatttttaactgcataatggcagagacAAGAAGTCACTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGATTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAAGTCACTTTTctcaggtctcttcatttgagatttgttgtatggagggaaacccacgtagtgtgttacacaaccttagtgagttggc
tttaaacagctttcttgtcctctccagtagcagtacatccataactacttcccaaccctcagtggccaaggttggaatgctctcagacacaagtttggag
tgaggtcgttagctcttctctggccaaaaagaagaaggttcttctactgttaataacaaagaggtcatgagggagataaccctgatggggtctgagtctt
gcagaaatactaccttagtattcactgcgttttaaaaatatatatatcatttacttactaatgagtctgtctgtagattgctttggtctgcatttactct
tctaatttca Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:SLC27A6:NM:014031:2/11
0 chr5 142335197 142335198 1000650 0 + 16830; RIP_Alu_chr5_142_02 NA NA SINE Alu Ya5 atcgtttcaaatctccattggccctcccctacagttctgaaagattctgtcttacacatggggtggtcgaggaggggaggcaggtttgtaatggaaatga
tggtagactgagcaaggagatgtagcatctgcttcccttgtgctgctaaacggcatggacttggaaaagctgctcacccctcctaggcctgtggttctgc
agctttaatataaaaggggtaggactagagaactgcgtctacagtagtgattttcaaattatgtttcaagaatctttgggactctacagttgctgaggtg
aaagaaacctttctcccagcttcttccagagctgccctgctttcatcttgctggtgtactggggtttcacattcaatttttatcAAAAATAGACAGACAG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAGACA
GACAGactaatagttttaaaaccatcagattaaatgacctgaatgtggttattgtttcttacacatagttagctacttaataaatagttttaattcaact
tagctttgatcatttagcaaactataaagatgatccctgaaagtttagtcttagctttgttctttagatgtttcttgtgtgtatcatctcccaatcgaca
gtcagtaaacttcatcattcccagtacctaagattgcagtgtgtatacttgtgtatactttattacccagcgtccctgagattacttaataaaggatttt
ataggataaaagtagctccagtctttgtgtcctgggttgcctggagagtattaagaaaacataataaaattggttgaggtgtaccatac Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ARHGAP26:NM:015071:11/23
0 chr5 170790116 170790422 1000651 0 + 13564; RIP_Alu_chr5_170_01 NA NA SINE Alu Yb8 ccagcactttgggaggccgaggcgggtggatcatgaggtcaggagttcaagaccagcctggccaagatggtgaaatcccgtctctactaaaaactataaa
aattcactgggcgcggtggcaggcgcctgtaatcccagctactccagaggctgaggcgggagaatcacatgaacccaggtggcggagattgcagtgagcc
aagatcacgccattgcactccagcctgggcaacagagtaagactgtgtctcaaaaaaaaaaaaaaaaaaattgtaccaactcatagggtttgttctgggc
attacataggaagacatccctcaagagattcctagcacagaggaagtgctcaacacacaatgcctgattaagaaacaaaactaaactAAAGAAAAAAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGTAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAAAAAGAGtaatgattgttactaatataatctttttctgagataaatattatcaacagtccccattttgctgatgggaaaactgagag
ctaaagaagtcgaataagtgggttgactgggggtgaagccaggtgacagctaaggtcagccagtgctggttcctgtgtgagtgttgcgtgtgtggtgtgt
gtacataggtgatgtgtgatgtgacgcacatttgtggaaggtggaaatgggggccaggaagaaagaggaaaatcccaaacatgcttttcagccatgagtg
ggctggagaggctaaaatcttcaagccagagggagtgatggaggctgctggatgctctggtgtgaggtggtaccttggttgatctctggaagctggtact
aggctgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:FGF18:NM:003862:2/5
0 chr6 3995257 3995559 1000652 0 - 404; pAlu6-4040151; RIP_Alu_chr6_003_01 AGCCTGTTGTTCCAGTACATATGAC CAGTAATGTTGTACGAGCCAGAG SINE Alu Ya4 taaacttaacacttatttccaacatttcaaacacattaaattcattttaataccagctcagtgtgtggtattaaaacacacagatatggcaattaacttt
ctattggaggaaaacaggaacaaattaaaaaaagacagattctcatcactctgataaattttcacttttttgcaggtcaccatagtgacagctaatcaac
atgatcctttcatttctcaactcgtcttcagataaagcaaaggacggcataagacagacaatagagggaaggagtttaagttgttattggtgcatacagt
aggtactaaaatgcactgaattaaaaataatcagcctgttgttccagtacatatgacatatggctataattttaaaatccagtcAAAAACAACTGTTTCC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAACAACTGTTTCCattactttataattgcaatacttgttttacacattctatcatgtatcactttaaaaaaatagtttaaaaatatgttcttct
gtaagtatccgtactgttaaaggtttcctcacgtcttctgaacttacatgagctcattgtttctgatgatctttacagccacttcttggttggctcttgc
attatctctggctcgtacaacattactgaatacaccttgcccagtgtagccatacacattgtaacgtttatctaggacttcacctatgttcacacctaaa
aaggcaaattgaaaaattagaattctgactataataaatagaatcagaaagtaggaaacacagtgcagtcatttaaaaattgtgttaaatctctactatt
tgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA 596 291 NA intron:PRPF4B:NM:003913:9/15
0 chr6 8172939 8173240 1000653 0 - Yb8NBC589; 3936; RIP_Alu_chr6_008_01 AGTCTTAATGGGCGCTGAGA AGTGCCTCACCCAGTAGCAC SINE Alu Yb8 agcctgagcgacagagcgagactcaatatcaaaaaaaaaaaggaaagaaaagacacacaagtcctcagctaactccagcacactttctttaacatagtaa
attactttaaaataaatttactaaaatatatccagttagctagtggaatttcgttggggtttgaggtttttcctgagttgtttaaattgactcagtcatg
aatgactttgtaaattaaaaattaaatggactttcaaaaaataaaatacatttactcaaaataaaattacttaaaaagaaattcaggagtctttactatt
aagtctcacgtagcttggactaatagtctccaagttcagtgcctcacccagtagcaccatcactcagagcaacagaagtctcttAAAAAACTTCACAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
CGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACTTCACAGTAaattaagtacaattagcagagcaaacatcaacactaccagcccaggaaagaagtaatcgctcagccttcattctcagcgccc
attaagacttgaaccatttctcaaatcagtgatctttttaagtgatcatcatcatgaacgccctcctgaattagggcctcctcattatggggcacataat
gatattaaacttcagcctttgttaagaagtggaggtaataaagctttccaagaagcgacagcttataattttgatccaaactataaaaatagctaagtgc
ttcctaatgctttcataagctaggctttttaaaatgttcctttaagaagcatttccttgaatgacagacataaacggctggaagagacctttgaaagcag
at UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 472 154 NA intergenic
0 chr6 8959832 8959923 1000654 0 + 33366; RIP_Alu_chr6_008_02 NA NA SINE Alu Ya1 atatgaaaatggcataaaaataaatatagttatgataacgatgtataatacatttattggtttattgttttttcctttaatattttctcatgaaccctat
tcaattgtacatttctcacaacaatttaaaacaatgacaagacttcattttatttgttgatatttttattcattgttaaatatttagagtaactattttt
aaaataattttgataaagttttcataaatgtaatgattcccatcaatgacttactattaccattgtagtggtactacagtgtgtggtcatttcaggtttg
tgatgcacattgacagcttgtttcctgatgttgtcccaactacattcctactggcagaatatgagtgagccagtagggcagggtAAAAAATGCTCCTCAC
AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATG
CTCCTCACcctaaagatacatatgtcctaattcctagaatctgtcactgtcaccttttgtggaaaaatggtctttacaggtgtgattaagtcaacaatct
tgagatgagaagattatcctacattatacatgtgctcactaaaataatcacaagcttccttacaagagggaggtagagggagacttgacttcagacagaa
aaggagaaggcagtgtgacacagaggcagagactggagtgatgtagccacaagccaagcaatgtcggcagctgacaaaagatggaaagggcgagaatgaa
ttctttgctagaacctccagcgcaagtgtgtccctgctcaaaagacatcatttttcagagagtttacttgtcatgatattaagtttatccat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr6 23408356 23408663 1000655 0 - 30935; 10655; pAlu6-23362812; RIP_Alu_chr6_023_01 NA NA SINE Alu Y tcacagttgaatacagaagcttttataagaaaccaacgaggactaggcatctcatttgcataatgtgcagatttctggtagctccaccccatcctcctag
tatgcatgtgggcccttagcttgagttactccatattgctttgttccccttactgtgtatgtgtgaggggacaaaattttccattttgggcatgtctggg
taaatctcctgtgtagcctttcttacctatgaggctgtgggcatgcctcaggcaagcctccctgtgcaagttcccttatctatgcctgcaggttgttctt
ttgtttgaaataattcaactgaagacccatcctaactgcctgcctaaccagtttgttccttcctcctctctcaatttcagttttttAAAAATATTTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATATTTTCTCaggtggtagttaaggtagcacaagcctctaatattcaaggttattattcttgttattcaagaatataatattcaaggt
tattatattcttataactttgagatagattttaaatttatgagatcttatctgaggctatctacctgaacattaacaagttgaagaagatatataatact
tataaacaaatattcactgtgaaattatctgtacttatgaaaaaacgaaaattaagttttgttaagtatatcttaaatgttaggacccttaagaacatga
agaaatgtttaagatataatttttaaataaattaaagcaacataagtatctagatattttggctgcaactttataaacatgttaaacatatttgttgaat
ataagaaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 28298187 28298511 1000656 0 - pAlu6-28252653; 53100; RIP_Alu_chr6_028_01 NA NA SINE Alu Yb8 agaaagaaggaaagaaaagaaagaaagagagagaaagaaaggaaaagagggagacagggaaaaaggaaggaaggaaggacttggaggattggtgacaaag
agattattgatggaactagctcgtatgtggatagatctcttagaatggatatcaaatgtacaaatatttgtgtcctgtatgaatcttcattaacccactg
tgtcagagggtttcagtaagcaagtgaacaagatgatggtgaaacagaacatggactcctcctcttcatagcctactgggatccctccttaagcatgaaa
ataaaggaaaaattgtgagtcccttcaagggaaattccaggcaccctgcaaccagcaactagggaaataaattaataacctgctaagcAAGATGATAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGATGATAATAatagcataaacaatagtcacccaagtgagtcagagtcatgagatgtttgtttccttatagaaa
ctaaagataacatttgacatatgtccttgagttgagttgtttttcagaaaccaggacccccaccagatggaaaatgttgatcactgtcatatagaccttg
acagacaggaatcagaagatggataagcaagttctagaaattttccagcctttagctcacattggagaaccccctcatccatgccttaaaaactcttgct
tgtaagccatcttacaaagagttcagatcttaagtgttagtggcccaataaccttgcttggtgctctacaataaatgccttactttctctcactgcaaat
cctagtgtcaatgtttgactttgct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 37402951 37403254 1000657 0 + 238692; RIP_Alu_chr6_037_01 NA NA SINE Alu Y cagaaaaagaaatcttaccacacagaggtgaatatcacaaattttaaaaaaattgattagtatgcattttattttatgtattaatatttaaaaccattat
tctgaggagattgatggggttcaccagacagcccaagagtctaaggtacagaaaagactgagaccattataaagagagcctgcctaacttaggatacaag
tggtctacctgaggagaatgttagcaaaaagaggcaacaccttttccagttgttgtgggatagggacatggtgcgggaaggaggtaggaagcagcagaga
tgggtaaaaggggccagaggccagggagtacatggtggcatgggggtgggggcatgtagtatggtccaaggtcaacattttAAAAAATAAGTTGAGATAG
GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGACTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATAAGTTGAGATAGaaatgatggttctctttcaaacaaaacaaacaaaaaaagctttgaggcagacaggactgaggccagaatagaaccaa
gagggaattactcctgtgagaggggaatattccaaagatgttccgatcagctaaaggcagagtttttaaaagcagagcatctgctggcttgagtgaatat
caataactggttgaataactggtctggttgagtgaatttccgtaatcatgtgactggaggggtttgcctggagggttggagagagcagatgccagcaacc
atggaggggagagtggggaccttgggatgtgcactcctccgggggttcaccaccatcatgacggctttgagttctgttcttgggcttggggatcaaaggg
aaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:TBC1D22B:NM:017772:12/13
0 chr6 44721477 44721778 1000658 0 + pAlu6-44614813; 238284; RIP_Alu_chr6_044_01 GCTTAACACAACCCATAAATGGCTG AAATCCTCGTGAGCTGACTGTTTCC SINE Alu Ya5 agtgcaaacgccaagatgctggataggacattcagagtgtcccaagagactgagggctgcttcttttgcagaggagtctttcccttcacaaccagatttg
tgtcaacggtgagcgggccctctgcagtccatttagaaaattactcatacggtcctctttgtcctctttccattccttgtgtcctgacaactcttcacga
cccccagttattctttggaaatgtttcttggatctctcctggtctttttcttcatctgcaatgtgaggataatgatgataacacctttgcaggtgcttaa
cacaacccataaatggctgagctgagcttcagtccatgctttgggtccccagactgtgctacttccaaaaccaggcttgtctcctcAAAAAGACAGTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGACAGTTGCtccttgagggtagggactgtgtctgccatgtcccctgtagcccctggcatagcctgctgttggaaacagtcagctcacgaggat
tttcctcatgcctgttcatggtggcttcagcctctctcgcctggcatagaaacccaagggtctccctgctccttctcccaacaggactgctgggcagagg
aagacccccttagttggaggtagccaggctgggttccctcctgtgcttgagagtgtgctcccattgacatgtccaccactgtggtttctaggagctgctc
tgtggatagtgtatgtgtatcccagcctcttctccatctttctcacccctcctcctcttcctctttgatagtctgagttccaggtccacatgtggttcat
tt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA 508 206 NA intergenic
0 chr6 47886200 47886201 1000659 0 + 14170; RIP_Alu_chr6_047_01 NA NA SINE Alu Yb8 cagctcggttcactggttcctattagccgtttatacgaaatatagcaattgctctgctggaggaggacagggctatttcttttctctagagggtcagctt
tcggggaaaaagcaggcggtagagctgaagcagtgaggagcccttaggtgctagaggttgaagcctctttgtggaaggaatgctgaagagatattgagtc
gtagattttagaaggggctgcttcagagaagagcagacgggtggatggtagccaccagaggtttctttttatctttacaaagaagccaaaaagaaacctc
atttctctttgttgttattaagaagttatgcaagtgagtaatgtgcaggtctgcagagcaaggttaagtgatgtgaagctagtttaAGAATTATTGCACA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATTATTGCACAattaaactggattaatcaatatccttattcttttcttttctgagccctgaaatgtttttgcttataag
gggacaccctcttgggaaatattttgaaatcaaataataaagctaatgtattgaatatgggattgtggaaataaattttgggtaattttaacagtctatt
acaagttaaactcattttttcctcctgaattgaatcctctgagattttggtagaagttggtgaaccaaaggaaacaaatgtggccaagagctctttctgg
aatgttattctttcctacacctgggtatccagatgtagtctcccatattttgtaaacagcactgctccaccctggctgtgtaatggagacacctggggaa
ttttgaaaaatgactgct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:OPN5:NM:001030051:5/7
0 chr6 50873931 50874226 1000660 0 + 7113; RIP_Alu_chr6_050_02 NA NA SINE Alu Y atgaataagcatgtcctgacatggtcagcctcctccaatgataagaagccttccctttatagacctagcaaaatcctaaagtcttggaagaaggggagaa
acgtatgtatgctctgaagaaacctgtcatcaccacaccactggatcctccatctctacctatttgggaagaccctaaaagtaaagcaaaacttttgatt
caactttcctctttcaggccaaagaagaatagcttggtcttcaatcatggtcattccataaagcagtccaaactcggaagactgggaaaatacaattaat
atacttttgatacctaaatgtagtaggtggctggagaaactatcttactgtgttaagactctcagagtaatgtcgtcaatgagttAAGAATAGGTTTAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGA
ATAGGTTTAACaggaaatccaaaatcaaaatggcttgcatgagaaaaagtttatttctctcttatataaaagaagtacagaagcaggcagtccagggttg
gtgtagtgacttcactcatcagtagtccaggcctctttctgtccttcagctccactatctgaacacaagcttccatctttaagtttcaatacatggcatc
gtcatgcctacactgcagacaagaggaatgagaaagagacaaagaactaaatgtacccgtctcagatgagttgctccctttgaacagccttcctagagcc
tcacaccacattgcacttacagttcactggttatgtgaccatatgaccatcagaggctggaaaagacaatctttcagcaagttttattcctagtaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr6 51364260 51364561 1000661 0 + Yc1RG65; 4148; RIP_Alu_chr6_051_02 GAAAATCTTTGGACTGGATCTCAA TTCTAGAAACAAATGCAGCTATGC SINE Alu Yc1 acctttctcagagacatttgccttgttagaaaatattatctttatgaaaagtaattatataatagtgatgcttcatacacattaggggaaataatttttg
atgaggaacttccaatgtctctcaaattttgttgccatatattggtcttgttctggttctttcattagttgcatttagtatttttcagctacttgtatgg
tcaaatcatcattattctgagtgagtagaaaatctttggactggatctcaaaacaggatttttcttgtggtattaagttcctattgttgtcataataatt
accacaaacttagtatctcaaaacaacaccaatagattatgttacagttctgtaggtcagaagttcaacattgttgtcactaggctAAAATTAAGGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTAAGGTGTCagcatagctgcatttgtttctagaacttctagaaaaggatccattctcttgacttttccatcttctaggggccacccacattct
ctggcttatagactctttccttcattttcaaagccagcaatatgcatatctctgaccttacttctggagtgacatcttcctctgaacatagctaggaaat
aatctctgctgttaaggattcatgtaatcgtattggactgacccagataaccctggatacctcctcatctcaaggtctctattcttaattagatctacaa
agtttctgtgccatgtaaagttatatgttcacaggttccagggcatagacatctttaagggctgttattctttctaccatactcattataccataaaata
tt UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 57 514 198 NA intergenic
0 chr6 54664409 54664729 1000662 0 + 52977; pAlu6-54557746; RIP_Alu_chr6_054_01 NA NA SINE Alu Ya5 caaattgttgggattataggagtgagccaccacacacccagctgggatgtgtttttgaaggacaatttaatctaaatctgtactgttcaatatagaagca
actagccacatgtggctattgagcacttgaaatgggcctattctaaattgagatggactacatgtataaaatatacatggcttactgagaagaaaaaatg
ttatatatctcaataataattttatattaatcacatgttgacaaatgtaacatgatgaaatgctattctggatatattggtctaaataagcattaatttt
tttaactttttaaatatggtcacaaaaaatgtaaaattacatatgtggctcatattatatttctattggacagtgttagtctgaatAAAAGAATGTCCCA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAATGTCCCAaaatacattcaaatatgaaatcattaaaatcaatatgcttaagtctcctccaccccaaaatctaa
caatgttttctgatacgtctaattctacagatagtggctcctgtgtcaaaactcaggttttcattgggtatttagaatgaaatgtctggaataacaattt
gcttcctgaggaaattttatagaagccatttgctagaataaataggcttaatctttccccttcaatagcctacaagagttcccagcatactcagtgtatg
ggttgttctaataacctcttcccatcatcccattgccttccaaatgtgctaaggatatataaagcagaatcaagttcattcgtgtacattaatttgaatg
tttctatgtaccatgtgctgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 54972338 54972649 1000663 0 + 14392; RIP_Alu_chr6_054_02 NA NA SINE Alu Ya5 tattacacaaaattttattaaatgatacatagggtgttttctttttgcattattctttctggtttctaattccatggttaataaagtgtcatggcattgc
aaatgagacatgtctaagataaatttggcagctggccatatgatttgtatcttggggcctaggcaggcggggtttttgtatagatcttctgagttgccat
ataggcaaacccatattactccaagggtgcctgaaaactagttctattttgttactatgaagtaattgactcctacatgtgactctgaaaagggaaatga
ttatttgctatttcagtgagcccattgtagcgcttaatacaacctttctgtctaagtcgtttccttggttttatatttcattcctAAGAAAACACAAGTT
GGCCGGGCGCGGTGGCTCACCCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAACACAAGTTatctaagcatactttacaatgaataaccaagaacagaggaaaggccatggcaggtagaataaataaaaagaaa
agtttattcatatattttttacttatcatttgaatttggaacatgacttttttaaaaacaaacaaacaaaaaaccctactttactttcttagtccacttg
ggctgctgtaacaaaataccataggtggagtagctaacaaacaggcatttatttctcacagttctggaggctgaggagttcaagatcaaggtgtctacag
atttggctcttgataatgatcctcttcctagcttgcagacagccaccttctcactatgtactcacatgactgttcctcagtgcatgctcatggaaagaga
gagagagagaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr6 76014520 76014823 1000664 0 - pAlu6-75907854; 11446; RIP_Alu_chr6_076_01 NA NA SINE Alu Ya5 gtattacaaagtgttacattcatagtaggtaaccggtaattattgttcaatggggaatgactcatgttcatgttgatgaaaagagtcaaactctataaaa
tattttaagagatttattctgagccaaatatgagtgacacagccctcaggagatcctgggaacatgtgcccaaggtggttgggatacagcttggttttat
atatttttgggaggcatgagacatcaatcaaatacatttaagaaatacattggtttggttcagaaaggcgggacaactcaaagcgggggacttccaggct
ataggtaaatttaaacattttctggttgacaactgattgagtttatctgaagatctgggatcaatagaaaagaaatgtttaggttAAGATAAAGGATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGATAAAGGATGTGgagactaagttttattgtgcggaggaaactctcagcggactgcagagagagcaggttataaaatgtgtcttatcagactta
aaagagtgcctggctcttagttgattatctcctggatctggaaaggggaaaggagattctctatagaatgcggatttttcccacaagaaactttgtaggg
caatttcaagatatggcagagagacatgttttggggtaaaacattttgattttcttcctccttatgccagagtcacatgggaaagtaagtcataatatac
agggttaaataaaacccatctgatgagaatttgtggtttgtagggcaggactccccagaccctttagatatgaatttgggcaagataaaaaaaaaaatca
gaga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 86083085 86083388 1000665 0 + 10265; pAlu6-85976421; RIP_Alu_chr6_086_01 NA NA SINE Alu Ya4 ttgaagacatggagcagtgtgcttgcagttacactgctactgtgtggcaaagccagggctcttgtgcatcaccccacacttcattccacaggagttcatc
taattatcctcacgaattacaccatggaaagtcttcccttgcacacctcagccattctactaaaagcttctgagttataaatccaaaagggttgttcatt
tatatatcattagcttacattaattgagcgcttactatattatatgtctggtatgctcgtatttttcatgtattgtctcttctcattacaaggtgatatt
gtttgaatatatgtccccaccaaatctcacgttgaattgtaatctccaatgttggaggtgggacctggtgggagatgtttggatcataaGGGTGGGTCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAGGGTGGGTCCCtcatggatggcttgagccatcccttggtgataagtgagctctctctcagagttcacacaagatatggtggtttaaaagtgtgtgg
caccttcccccacaactatctctcccttgctcctgctgtcatcatgtgatgtgcctgctttcacaacaccttctaccatgactgtaagcttcctggggcc
tctctagaagttgagtagatgccagcatcatactccctatacagcctacagaaccatgggccaattaaatatcatttcttataaattactccgtctcagg
tttctatttatagcagtgcaataatggcctaatgcagaaaattggtaccaaggaatgggacattgctataaaaaaaaaacctgaaaatgtgaaagcagct
ttgg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 92864732 92865041 1000666 0 - pAlu6-92758067; 239078; RIP_Alu_chr6_092_01 NA NA SINE Alu Yi6 gtatagaagtgaaaaagagtagcatcaatagatttaatacaacaaatattttaaatgttaaactcaagttcagcatggttacttaaattttagtgctgat
ttaccaatgacgcagtccataagactacaagctctgtttttatctgaaatttggtatcatataaattactttcctcagagatttaaaaccaccttttgaa
tgttgttttgttcatagcacaccttgactctttagcattttgaagatatgcgattgtgccttaagcaaaacctgctcttgattctttgataaattgattc
aggccccagtgggcgcggtgactcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcagaagattAAGACTATCCTGGCTA
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
AAAAAAAAAAAAGACTATCCTGGCTAacaaagtgaaaccccatctttaccaaaaataccaaaaattagctgggcatgctggcacatccctgtaatcccag
ctacacaggaggctgaggcaggagaatcgattgaagccgggaggcggaggttgcagtgagcccagatcacaccactccactctagcctgggcgacacagc
aagacactgtctcaaatatatatatatatatatatatataaatttaatttaaaaagataaattgatttatcaggttaaatctttttttaaattgaaaagg
gttgtcttgcttgttctgtttttcattaaagtaatcagtctatctatcagcccagaaatcagaaatcgatttggttacattatcttggtttccattgact
cagggctgag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 93581275 93581473 1000667 0 + Yi6AH116; 6416; RIP_Alu_chr6_093_01 TGTGCACAATTAATGGGATA TGCCTTACTGTTGTTGAAAA SINE Alu Yi6 ctcagcctcccaagtagcggaaactacaggcacgtgccaccatgcctgactaattttttgtagtttttgtagaaacgggtttctgccatgttggtcaggc
tggtctcgaactcctggactcaagtgatccacccaccttggcctcccaggggtctgggattgcaggcatgagccaccacacccagtcataaaatcacatc
ttaaagtatttggaattggaaaccctcttagaattgatgtgcacaattaatgggatagggttctttttttctgaaaaattattattaaataagcagtgta
cccttcgattaatgcttttttaggatcgtgcaataaaaatgttttaaaataatacataaataagaaaaaatcacttataatatcAAAACATAAATGACTA
AACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAACATAAATGACTAgaaaatgagacagctttttcaacaacagtaaggcattattgaaaataatttttcattttgcaacatacaatgaatgtagaacata
aaagttatgtattatagaaattcacaatttcaaaacatattgctataatgaaagttctctaatacggtgaaaaggcttatttctcatataatatagggag
aaaaaattctggtattcaatttaaactatgaccccaataaaggaatcactaagagagaatgttgtcccaatttagtaagacaataaagagaatgagtgcc
acaaaatattgaaatagtatgattaatctctaagaaagagatttagaggtactataccctctcattgctcagatttcttttgtcctataactcatgaat UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 413 198 NA intergenic
0 chr6 107035539 107035841 1000668 0 - pAlu6-106928873; 31794; RIP_Alu_chr6_107_01 NA NA SINE Alu Ya5 ctttgtttgacccccaacaggaagcctgccgatcaatgagagagaactggttgatgcagtccatctaggacacagtaggatgcagaagggtggagaggga
cggaagaacaaacagagggtctccaggagagaaggtaaagatatcgagagggcttctccctctctttcagagagaggagatgcagatgagattagggaaa
ggaagggctgagacctcagtcaccatgaagaccagcatggggtggcaagtgtaccttatctacctctcatgatttaattctatggctggtaaggtttggt
agttgttctctttataaatttagtttgtcagaatgacagtaagctaaactttcacctccattggagcagccaattttttcttttcttAAGACAGAGTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAA
AAAAAGACAGAGTCTCactctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctcccaggttcaagcgcttctcatgtc
tcagccttccaagcagctggattacaggcatgcaccacccttcctggctaagttttgtgcttttagtagagacagggctttgtcatgttggccaggctgg
tctcaaactactggcctcaagtgatccacccgcctcagcctcccaacatgctgggattataggcgtgagctaccatgcagaggtgccaaatttttttttt
tctttttgagatggagtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccgcctcccgggttcaagtgattctcc
tgc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 112310561 112310861 1000669 0 + Yc1RG303; 19328; RIP_Alu_chr6_112_01 GCAGCCAGAAGAGATCTCAAATA TCAGTTTTGCGTCTGTATGAA SINE Alu Yc1 gtagtgagttcaaaatgaactcacacagatatagtttataatatataatctatgtttatgtatgtatttatctctatataaatatatgtatatttttaca
tagatgtatcttgtatatatatatgtgaaaatacctgggactggctgtctgaaccaaaaagagcagaaatagttacttgggatgtgtgaatttggcaagt
acaggtatagaaactcaaatctctgttacatattggaggtttaatttttctagcttgcaaatcaaggtcaaccacccaatggcagccagaagagatctca
aatagacataaattattcatgagcttacagaagttaaactcattttaccccaagagaatcaaatttactaagaatggtctgttAAAAAATCAGAAAATAT
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAC
AAAAAAATCAGAAAATATttcatacagacgcaaaactgaaatttatttcatcctgcatttcatttatcatttatttcaatgaattggctttggataagcc
ataggcattccccaaattctttctgtctgtctttcaataaaaagaggaacattcaatttctattcaaaactgaaattagacaaagacactcttttcacca
ctaatacttaacattgttctgaaaattctagtaaatgtagtaagacaaaaagaagaaaccataaatataaatgacaaagtggtgacaaaattctatcaat
tcctgttaatgtaattatctacctggaaagaccacgagaatcaattgaaacactattaaaactaataaatgaattcactatggagccagttgccaaagat
c UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 63 458 140 NA intergenic
0 chr6 116857523 116857825 1000670 0 + 30968; RIP_Alu_chr6_116_01 GTCTTGAACAAGTCAGCGTTTCTG GAAAAGGCAGCACAGTGGGGCTGAG SINE Alu Yi6 ttgcccccattagtcaggagccaagtcttagcctgggacctatatttaggcccagagctggttagatctgggcctctggaagccccacacctgccacata
gtaggccatggtagcgtggtcaacatgtttgtggaagtaaagcaatgtggctacacccacaccaggaggcattgggcttaattttattctcaagggttgc
gtgttttaaaggaaaaccttaaatctaaagacctaggttgagattaaagttgtgttcatttttagtcatgtgccagaggtcttgaacaagtcagcgtttc
tgttttggggcaatgatacataattgggttgttaaaaggattaactaagattctgttcagtgctgtgtaagttataaatgttatAGAAATATGAGGAGTT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGTCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAGAAATATGAGGAGTTgttattgtcaactaagtgcaacagttctagaaagctagcatttctgagttaaaaggttttataacttgttatagacttaat
tttcagtggggagattaaaatgtgacagatggaagaattgcttggacaaaatcatgtagctcattttttggcagattcaggattcctagttgatttttca
ttattagtttgcctttccagtggtttctcagccccactgtgctgccttttcagatcctgtggaaaagcacataaaggataagaggttaccttctaatgac
aatacaaattgaagactgtccgtttagcgtttataatatgtgcagcctattacaaattctataaaataatgatgcaagtttcacaaagagataaactttt
aaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:DSE:NM:001080976:3/6
0 chr6 119459219 119459530 1000671 0 + Yb8NBC441; 3192; pAlu6-119352555; RIP_Alu_chr6_119_02 TAACGTGGTACTGCTTTGAAAGGAG TTTATCCAGAGTGCTATCACTCCC SINE Alu Yb8 gtgggttcctctttcacagtgggttcttttctgactttggactttggcaagattcttctttgtatttgagcctatctcattccacctctcctcaaagcaa
ctcatgtcatttgaaaagaattctttaggccatcgattaaaaaaatcacccctttgaggtggtgacattgggtaccaggggaaaaagggtacctactgtg
tattctgataagtggcttgaaaacagcctcctcctcagcttgctgtctttattgcctcatctctcatgacacttgttttcttcactgctcctggcatgtc
ttcaggttattgacttctgggatttgcagattttgtaacgtggtactgctttgaaaggagtactttacactgctttggaagaacAGAAAGAAAGAAAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAGAAAGAAAAGGttaatgctaaggactgttattagtattggtattggtctaggctgagattcagtatgggagtgatagcactct
ggataaatgcttgaacacacttttgtctctcctacctcctgacaccaattacttccccacccccactcctcccgacttgcttctctcaggtccaggcctg
tccttgacgtcagaaggcatgggctggtctccaggaagcccgtccaagctcagaacttagagacaaagcaaagcattctgcacagtcctgcttgacattt
cctctcttttctcatttgaagattttattgtgttaccctggtgatgagaaatgtagttaagaaagaggaattcccagagtagaaagtatgggggccagaa
gaggcaataaga UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA 472 161 NA intron:FAM184A:NM:001100411:1/17
0 chr6 120936160 120936161 1000672 0 + 14455; RIP_Alu_chr6_120_01 NA NA SINE Alu Ya5a2 cactagggagcccagttccataaatgcaacctctgtcattaaccctaatatataagaacagctcacactggacatctttgcaatgaccatgccctcacca
tcaaagtcttcttataactttagtgaaggtagtatccgctgagccttattagagaaaaaagacaactgagagaggagattgaggttattgggtctttcat
aactgattcttctagattactcacctctcttatgccacctttatatcctctccacaacactctgatagggcatttctggcacaactccttcacttaatat
aagccatcagtttttccaagctttgaaaagtctaatagcatattatgactagatcaataatttcaatcatagagttggtggttatAAAAAGGGCTAAATT
AAATTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAG
CCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCTAAATTacagcctcagc
aagtcttccatgcaaaagtcacagggaataagtaggactctgagacttgaaatagaatgaatctggatagattcactgaagaacattgagccctcttgat
gggctagaataactggctgtaggatagcatcattcctattttgagaatcatgcaaaagactcaactgtggcagatgccttgcaagctgataattcccttt
ctcaagagctggcatctgctcctcctggctattaatctaataactaggtaaagttttgcaaaagtgagttggaaatgataggtcttgctaaaggaataaa
ggaattattgtttgaaagagctatatgtcctgatatgtgatagaaagaataagataatgtctgagaatggctct Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr6 123805123 123805420 1000673 0 + 4970; Yi6AH125; RIP_Alu_chr6_123_01 GCTGAATTCTGTCCATGACT TCTACTCTGTTCCAGGCATT SINE Alu Yi6 ttttattctaacactgtggccagaactgatgtattcctggttccagttaagtaaataagaacttgtttctttaataacaatgcattccaacatacctcat
cactgtcaccttgttttcttagagtggcagagattggcctggaacccagctcacaatatgaccatggaaaattttacataagctgaagataagttcaatt
acacgagtgattattagagttgtcccattgttatctacagaggggtgtggagcacgagagaaagcacaggtgctggcactgatgaccttgggctgaattc
tgtccatgactcttcctagttgtgtgaccttgggcaatgtgctatggcacaccgaatttcattttcctcatttgaaaagtggagctaataaaaTCTACCT
CACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCTGGAGGCG
GAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAGTC
TACCTtgcttacttgtgagaaatggagataactgggctaaaatgcctggaacagagtagatgtagaaaaataatgataataatgacaagctattactata
ttttacaaataataaaaatctgaccacatataatctttttaggtaattttttaggtgtgacatttactgatctctttgagtaaatgcaactttattctta
tttttctatatccagggagggtatgtctagaatattttgtattaagaaactaaagggaaaaaaatacccataagcaagacagaaacatgttatgaagggt
actgtactgcaatgaagtggattcaagtctcaattttgctataattagtagtcattaccttatgcaactatagatgaatgttgtatcttctgtcttca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 469 164 NA intron:TRDN:NM:006073:10/41
0 chr6 129031525 129031843 1000674 0 + Yb8NBC278; 14379; RIP_Alu_chr6_129_02 CATTTCACAGTAGGGAAAGTTGG TGTGGTCTGGAGGAAAGTAGG SINE Alu Yb8 acactgggatattatgactattttggtagcttaaagaaaaataaattcataatactagatattaattatattcgatgatatacataatttataatactag
gatagaaaaaatctttattaattttcaagtagttacatcattctctcctcacttcttagcatgaaggccatttatgtactggcaggtaaatgtcaggttg
agaaggctctaagtcatttcacagtagggaaagttggtttttcaacttggaagcaaattttattttattatttttagaaaattatatatatatataactt
aaaatggaaaattgcacaaatcataagtggacagctccgtacattctcaccaagagaacatatcaatgtaatgaacacccaaattAAGAAACACTACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCATGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAACACTACATGattagctccccaatatcctccattcggctactgtctagccaattccctaccaagggcaactgctac
actgacttctaacactgtaaagtagtcactggcagagattttgaaaggcagtatgtcctgctgaaatgtgagggaaattccactgatgattttaaaccta
aaacgatatgaatatctttagcaacaaaacctactttcctccagaccacataagaacccgcccatgcctatgtcctatttcctctggagcatttttaggt
taagttttagatcttgtagtctggtgatatagtacattttgacataacatggagtaaggatgccatgaggatgcccagctcatgtagggggtgcttggct
ggtctgtgatagtcactgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 736 402 NA intergenic
0 chr6 132739336 132739644 1000675 0 - 16327; RIP_Alu_chr6_132_01 NA NA SINE Alu Ya5 tcacaattgcaacccagttctcaaaataagaattttgacaaacctcaactttggcagaagaaaagtaacattttatgtgaaaaactgacatagctaattt
ctggagacagaaaaaaataaacaaaaataagcgtacccatcctatcccagcagtggccactacactgtagaagagtgaaaaaggatccagactctggggc
cagagtgccaaggtttgaatcctgcctttcggtttactagctgtaaatcctgggcaagtcgcttagcctctttgttctttgatgtcttcatctgtaaaat
ggaaaaatagttttatctgatagatgtgatttgaagattagtttagttaatacatgtaacaggtgtaaacagggcctggtgcatatAAGAAGCTGTAGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAGCTGTAGTTattgttaccattgtcaagaaaggtgagttagactctgcattgccaacaatttggggttttaacatactaaagaaaat
ctagatgtggtaccctggatgggaaacatatgcacacttataattaccatacaaagatgcttggaataaaaatgccaaatgccatctatttgagtatgac
ttttatagacaatgggaggttttatcttatatattacattttctcagtcaaacatagctataaattcttcaaatacaattttactgttagcaaaagtaat
tataattatgtttcagcatgtatattctaaatcaactgtacaacttctcaaaaataaaatatcatcaggtactgaaaaaccagaaaggcagtaattaagg
caaattttg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:MOXD1:NM:015529:1/12
0 chr6 133413195 133413524 1000676 0 - Yb8AC1362; 16488; RIP_Alu_chr6_133_01 AGGCAAGACAGTGGAAGGTC GCTCCATTGCCAATTTTTCT SINE Alu Yb8 aacagaaggagccattcagttacattgaacaagtttttccagcatttacctctacccttagcactatgttacacttctgtggatattaaggaaaaaaaaa
gatataaaagacagatttgtaatcataagtaggaaaacaaggcttacattcataaactaataagaaaagagaaaacaattcaatcaagtgccaaaatttg
tgtatagacactaagtactgtagaggtcaaattttgcaatcttattatttactaggcaagacagtggaaggtctatgttcaagaaatatgatgggtgaga
aaatggtaatcatagcccatctaattaacatttgttccaggtaagacatctgaatcaatcattggaaattaaatgcttgattgtttAAAGAAAAATTGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAATTGGCaatggagcaaaccttaccacaagattatttgccaaacagaacttagcattctttct
tttaacctctaatggaataggttgtgaagtgtcttttgctttttcccatgatctagctcaactttgagaaagattttgagatcgcaggtcagcttcttgt
tgaacccgactgagtacttaagcaattgttgaggttgagaattagatatcagatggtaaattaagactgggattttattgaaccacagcttccatgtatg
aggctatttctctcaccctttgagcaggggccaggccttgtcaagccatgagactctcttggaataagtgacaacaaaggtgcaagttagcagagaccag
ggacatataactggccatctgtagtccatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 60 499 171 NA intergenic
0 chr6 154488623 154488928 1000677 0 - 9719; pAlu6-154401955; RIP_Alu_chr6_154_01 CCTCTTGGACAGTGAAATCACAACC ACTTACGCTCTTTCGCTTCAAATGC SINE Alu Ya5 gacatttgaattttgcaaatattgggtagtgttgggacacttctgcccttcttgaaatgggggaatataattgttgttctccttcccagaatttctttgt
ctttgtcctcttggacagtgaaatcacaaccattaggtcacacaaatgtagtctcctctcccttctctctggtcttgttaattaaagcagttttgctgtg
cttaaattaatgaagctcactcatgttgttcagtgaatatggctatgttcaattttacccagactcttaggaaaagagttgtcttctttatttcctcttt
tttttttctcttctcctatatcttctgtggtttataccacttatctcatttccgtttggtattttgtaaccctgtgaatttatcaAAAAAATGTCTAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGATCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATGTCTAGCCttagtgggcaatgcaaacttaaataaaacatttatgcatttgaagcgaaagagcgtaagtttaagagactttaaagcaa
atgggatgtgatagcctgttttcaacttttaggtcctttcaaaaatcaaattgcaaaggaagttgtaggtaatattggaaaccacctttctctggaaggt
tttttttgctaaacattcctattacagtgcatgtgacaatatgaagatgaattttccccactgtctcaaagggactctgtgctctctctctaaaacctaa
aacaaatacttatttttctttatgagtatacttatgctaagaatgtaatacttttagttggaacttaagcaagaaaactctgaatctaaacctgtgtaat
ggaaga UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA 675 362 NA intron:OPRM1:NM:001008503:3/4
0 chr6 169786749 169787078 1000678 0 + 238980; RIP_Alu_chr6_169_02 NA NA SINE Alu Ya5 cacacgagtcacactgtagaaaagcctagttcatacgagtcacactgtagaaaatcctagttcacaggagtcacactgtcgaaaatcctagttcacagga
gtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacactgtagaaaagcctagttcacaggagtcacac
tgtggaaaaccctagttcacaggagtcacactgtcgaaaagcctagttcacaggagtcacactgtggaaaaccctagttcacaggagtcacactgtcgaa
aagcctagttcacaggagtcacactgtggaaaagcctagttcatatgagtcacactgtagaaaatcctagttcatacgagtcacactgtAGAAAATCCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA
AAAAAAAATAAAAAAAAAAAAAAAAAAAAAAGAAAATCCTAgttcacacgagtcacgctgtagaaaagcctagttcgcaggagtcccactgtaggaaatc
ctagttcataggactcacactgtagaaaagcctaattcgtaggagtcacactgtagaaaagcctagttcacaggagtcacactatagaaaagcctagttc
acaggagtcacactgtagaaaatcctagttcgtatgagtctcactgtagaaaagcctagttcaccgggtcatactgtagaaaatcctagttcatacgagt
cacactgtagaaattcctagttcacacgagttacgctgtagaaaagcctagttcgcaggagtcccactgtagaaaagcctagttcacaggagtcacacta
cagaaaagcctagttcacaggagtcacgct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:WDR27:NM:182552:16/25
0 chr7 4774282 4774588 1000679 0 - 11879; RIP_Alu_chr7_004_01 NA NA SINE Alu Yc1 gcagctggcacagacttggatgtgacagacaggcacggcgaggttcatcagtcagagacgaatcctcctcaccactctccccgctcctctctctctcgtg
gccttctgatttgcccggagagccttctcacccacctccaggaaaagccagcccaacttcacacacccaggtagcacccctgctcatggtgcatggcagg
cctagccctgggccctccaccctgcccaccttcccggagggggttgaaatgttccatccagcagcagagctgagggctgcagcctctgcctgaggaggag
ctgggacggggccggaaaagcccagcagagacagggtcccatgcccgtgggctcacaagacaacccaagactgaaactattttccctAAAGAAGTCAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAGTCAGTGaaatgggtctgtttttaaaatttcagtccagagggaaatgtgtgtggttgtatccccaaaatcccattcttctaagcagc
tgtgacttcggggtttgggtgacagggaggacagaggaaaggacgcagcagctctaatgggacaatcctttccacagattcaactccgacagaattcaag
ccgcacggtgtgggtaagggcccccttctcgaggcacggaccccactcgccaccctgcgaggggccgcggtacccaccgagatcccctgcaaagcacaga
ttccaaaccctccctctggtcaccaaacgtagcagcttttcgtatcaaaacccaaccaaaaaaacagtaagtatgtgatgaaaaccgtgtcctgagcact
gaaaaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA exon:3UTR:FOXK1:NM_001037165
0 chr7 7508853 7509136 1000680 0 - 7830; Yc1RG330; RIP_Alu_chr7_007_02 GCACAATTAGCATTACCGTTTTC TCCTGGGTTTTAATCTTCATCTG SINE Alu Yc1 tgtatatttattatgtataagtaaagttttaagtgctcatttaatactaataccaccttttgagacatgatctattcttatttccattgtacagattagt
ctactaaggcacaaagagtttaagcaatgggtccaagtctacagagctagtaagggacagactgagtattgaaacccacaagtctgctcttagctaccat
attatatttatccctttaggaaaaattgctgaatttcctgaatatttggcctgaaataaatgcatttctttttgacagtgtggaagttctatctgtcttc
ccttctggtggactctggctagggacaacagtttgttgaaaggtgcatttctcctgggttttaatcttcatctgaaagtgcaggAAAAAGGAAGGGAATA
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGA
GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGAAGGGAATA
tcttgggagaaagaaaacggtaatgctaattgtgcattttcaaatactatatttcatataagaccttaaaatagaaacctttaaacttgcaacatttgca
aagattccacgagaggttctagatagggcctgcctatgtctatgaatttacaaatggtctttctcttgaattacgctcactttctgttgctttagggatt
ggcttttcttcattaaagggttttcagaaaaggtggccaaagaacaaaaggaaaaaaatgcatgtgttaagtcaggaaaaaatgtgctcctggcccattt
tcacaaattatttctgtcaataatactttccacatgtaaagtagctcctagtctgccctgaatgactttgttgccttagcaaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR;C:Reference NA 60 384 84 NA intron:COL28A1:NM:001037763:11/35
0 chr7 12025241 12025551 1000681 0 - pAlu7-11768949; 20744; RIP_Alu_chr7_011_02 NA NA SINE Alu Ya5 taaactgcaggaattgagtatgtcagattttggtatacgtggagatcctacaaccaatccctacatacaccaagggatgactatagttacgtgtggataa
actccccttaataaaatgtcttatgttactaaattttgaagaattatgaagatagctatttttatatattccttttgtcatctaaatactccaaaattat
ttttagtttaaggcatccatttgctaaaggctaaaataagaattttgttcattgatttcctttaactaaaaaataaaaaataaactttgtttcttttctt
taggcaatgttttatttaaattataagagaaatgtgattaagtggttttattatttaataattgtaaaatggagttcaaatgtatttAAAGTAGTATAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGTAGTATAGAatcattattctatagacaatctcagtaatgagaaaccgtaaatattcttccttgaaaatatacaggcatgcctcag
accactgcataaagcaaatattgcaataaagtgagtcacacaaatttattggtttcccatatttacactacactatagtttattaagtatgttgtagcac
tatgtcctaaaaatgtacataccttaatttaaaaatattgctaaaaatgctaatattcatttgcacctccagtaaatagtaatcttttttgctggtggag
agtcttgacttaaggttgatagctgctgacgagggtggtggttgctgaaggttggcgcagctgtagcaatttcttaaaataagacaacaaagtttgctgc
atcagtggatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 37803176 37803177 1000682 0 + 9775; pAlu7-37543417;1104685574181; RIP_Alu_chr7_037_01 NA;NA NA;NA SINE Alu Ye5 aaagctctttgacctgacatgtggacccatcaagagtatagaccccaaatcaagagtttcttcttccttctagtaatagttgtctgttttgtaccccacc
atgcattctgggtacactttattcaaaataattcagagagaaaagcttctaacttagttctttataatgaaatttatgttgctttaacgactgtctgttg
cctggatatgctgtgtttcttaagtggggttatacattaagcattcctatgtctcttccttcacagtattttcccacctttgtgataaaatgctttaact
gaatgagtgttactgtgatttcaaaatttttcatcttaatcatcatcagaattgttttttttcccaaaaaggtaatgaggattgattAGAGAGGGGAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAGAG
AGGGGAGCAccagttctatatttaccatacaatatgttcaatctcttagctctatataagctgactgcatcattttttccagacttaactaccttcatgc
agtacttaacttgagctaagcacaacaattggtttccctgtactctccagggaaatttgctcacagatttcacagaacaagataaatgtcagtgtactca
aattacattgtgagcaaaagttgtgacatttgctctctctttgagttctgaccctagaacattctttccctccatctccacctatcaattttttaagatc
cagagaacctggaaataggaacagtataaactgggctctagagaatacttaagttgacatagctgcttcttgaaaactactgattgtcagtaaagc Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr7 49522622 49522929 1000683 0 - 52662; RIP_Alu_chr7_049_01 NA NA SINE Alu Ya5 ccttaggaagtgtaggaaagaaaacacaaaattttgaggaagcaattgatgaaacatatgtgtcttgatcatttcttccttcactaaagtctgcttgggt
gttagagaccactgcacaagttacctctgaaccaaatcatggagggcaaatttttcagcaagagcggaggaatgggctttgatagcagaacctaagattc
atcatgatgtttatatctaaacttcctacaggccccaagccgtcatacggatggcggttgatcatctgccgaaagagccctatatccatgtacctatggt
agacaggattctatgataggacccctagcgagtcatgcctctgcatagtaccctgcccatgagtgtggatggagcctgaaatttgcttttAGACAGTAGA
GGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAA
ACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAGACAGTAGAaggtggtaaaggtgatgagatagttactctcatgattatgttacattactaagactccatcttagcagattatagtgagggg
ttctcctgctggccttgaagaaataaggctccctgttttcagagtgcttataagaactaatgttgcaaggacctgagggcatcctatgaaagctgaaagt
agtccttagacaacagcaataaatggaggcttcagtcctactgtcacagggaactgaattttgtcaacaccatgtaagcttggaaggaaatccagagcta
cagaaggagcacagcctgaaccaccctttgaattcttgtgagatcctgagcttagaactcagttaagctgtgctcataattgtgacccacagaaactaca
tatgttgt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr7 51659404 51659712 1000684 0 + 13499; RIP_Alu_chr7_051_01 NA NA SINE Alu Yb9 gttttctttaaaaaaaattcactgaaaagatactgaagagctccccaaactgagtagagttgaatgactcggccacacgaaggaaagacccttggcagcc
tggccaagcaatcacaaacaacctccactgaccttctgtgcctctccttccctggcttccaccagcatctactgggcaccaaccacatgccaggcataac
cgtgggatccaggctgccgatagggaactgtaaaatgccccgtcttcagagaggacaaatgccaggagatgggaagagctaagatggaggatgatcaggt
gagagtggagaggttacagcctcagcatgtggtctcctggaatggccaggaaggcttctctgatgaagtttaaactgagacctgatAAGAGTGAGGAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAGAGTGAGGAGCTacaggagcagctgggaaaggagtgtccaggcctccagcaggactgaggttggcttgtatgtgtataagtatatacat
aagtgtgtgtgtgtataagtaaatatagatatatatttaaattccatatgtgtgtatatgtatgtgtgtaaacatacatatatatttaatataatatata
atataaatatatatatatatttagagagagagaagagaggactgtacatacccagtttttccttgatatctctggggaattggttccagggccctcaagg
gtaccaaacactggtgctcacatcccatattgctaatagagtagtatttacatataacctacattgtttaggaaatgatggcaataaaaaacatgtatgt
atttagtac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr7 52062468 52062769 1000685 0 + Yc1NBC51; 6760; RIP_Alu_chr7_051_02 TCATACAAAAGACAGGCTTTGC CAAGGGAACAGATTCAGAAGAAACA SINE Alu Yc1 tcatcatcacattgcataagagataaatttatgtggttcccacttatcaatttcagtattcttaatgaattagtagacaaggtcgtctgctgatgaatga
aagccaagtgttgggtacaaggagaataatgaagttttgaaatggctgtaaaaaccaaaataaattctagcaggaatgggtaaatgaactgcagcataac
aatgaggtcacaacattcaattaagaacatattcaacattcaattaacattcaattaagagcatatagtgatacaaaccatatctttcaggttgatttga
ttctatacttttcatacaaaagacaggctttgcttttcttctgtatcagaaactcattctacaatatttgacaaattgtcttgaagactAAAAAATGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAATTACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATGACAgaaaatttacttcaatatgtaaaaaaatggttaagtagttcttattttaaaaatccatatattgaggcaaaatacttgttttgttat
ttctgtctgtttcttctgaatctgttcccttgaactttatcactgaagatttttctatcagcctttttcaataaacagatcctgttgactcatgaacctg
tctcatcacctccgtggggcgggtagagccagctaaagttcagatatatgctttgtccatggaggaacaaatatattttgtctgtgcagtggctctttct
cttctgaaaagtatctaaactcagagtttattgccctaagtatccaaacatgcttattattcagtttctcatcttgttcaatttgtttaatggatagaac
at UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 521 208 NA intergenic
0 chr7 79580027 79580344 1000686 0 - 21331; RIP_Alu_chr7_079_01 NA NA SINE Alu Yb8 agcattattgttaatgtggcatggccaattgatacgatagatttcttagctgcaacattgtgtttaccataatcctgactccaccaaaatttgtattcat
aatttcactgtaaaaatgaacctttaaaaactgtgtcttaatgtatctaaatgtaccttaaatgttgaacttttaaactgattttacattgatgtaatgt
tgtaaatgacagatgctcaccttctctaaaattttttattgatttgattttgattccatgaattgggtgggaaaatattctgaagcattattggattcaa
ctaacaaaatttcttatttgaagcatataattacacttatataaaactggcattggagctattttcttcacttttcatatgtgcatAAAAATTGGGATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATTGGGATTGaaaataaattatttagaagaacactcatttgttttaaatgaaaactcatgcttttcaaaatggaatgt
agcagctgcaggtattaaattgttgtctttggaaacattcttaaaataatgattgactttttttttttttttttttttgggaccgagtctcgctctgtta
cccaggctggagtgcagtggcacaatctcggctcactgcaagctctgcctccagggatcatgccattctcctgcctcagcctcccgagtagctgggacta
caggcgccctccaccaggctcggctaattatcttgtatttttagtagagacagggtttcaccgtgtgagccaggatgatctcgatctcctgacctcgtga
tccgcccgcttcagcctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr7 86674566 86674859 1000687 0 + 7627; RIP_Alu_chr7_086_02 NA NA SINE Alu Yi6 atcttaccacttagggcctggcctatcaataggaacataatgtgcctcactgctgcagggcaggcatgcaatggcaccacagaagctgtggcctgatcct
gcagaccaacaggtcacggtctgccagccacaaaggtgcaacaccctaacagatacctcccaggctaggctctgttgttcccaaagaaatatcaatggta
aacaatggggatctctgaggtccacgttttcctgagtagaagcccagttactttctgctagggcaggaccaaggactgatttataaggcatcacagctct
gaactccagctgacaaatcaatccttcggcaatgctccccaacactcccagagaggggcaaggcaaaacagagaaaagtctttgcAGAAAAGCAAAAGCC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAA
GCAAAAGCCtggatggacaatgccatgaagacattccctactacattcttgagggagaaggcagggtagagggtggaggaagattgagaactccattttt
ggtgttacttctaaactttctatgtgattctacaaaagtctttctcctcagacagcatcgcagggagtcctatagacccacatcccttaccaggtgctca
atccgatttccaggttagacctcacaccttcaagtgtcctcctctgtcagacatcctacccctgggaagctgttccacatgagcaaactgcatcctaaca
gagctcatgcccctgtgtactcagccagagctcatgagacttatttaccaccacgagaacagtatgggggaaaccaaccccatgattcaatcat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:C7orf23:NM:024315:1/4
0 chr7 89436821 89437124 1000688 0 - pAlu7-89197006; 8375; RIP_Alu_chr7_089_01 NA NA SINE Alu Ya4 ccaatttgcgtaatttttgcttgaggtgtctcttagtctgggtgcaggcatagagaaaataagagtttgtgaattgatcctgtactggcatttagttaag
aaaaactgatggaagaaaaacaaaagatgttttacagacactggcaagagagtggttgatatgggggaccacggagtctagggaaaatagaacaggaagt
gaaggctgaagattagagaggctccctttgaaaggattaaggactagtggtctcagaaaggtaaaagaataaatgctgtggacatagctatatgagagat
tctggaggaaagagtttgtgtgtggagaaatgaatgttttgattcaggaagtctatggtgggtcagtattgagtgagtgaaccagattAAGAATAAGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATAAGGTCcaggatgtggctgttggagttaagatgaagtttatgtcactggaactgaagatgttaagaaatgaagttactaaagtgattgac
taagaaatcctttccttgttagatccaccgagaatgatggcaatgcttgagacatagaggaagactgagatcttaagtctcaaatttttattgtataaga
gaaagttgccaggcagttaaaggatgcacagaattggagagaaaaatgatggtataatacaaagtgaaacaagtgacagcctggggtcaaaaactggatc
accagtgtcttttatttggcccgcactgtgttttaaaagttagattaaatgaccataatgaaaatatgtgagtttgcacacacacacacacacacacaca
caca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 90421882 90422175 1000689 0 - 15088; RIP_Alu_chr7_090_01 NA NA SINE Alu Ya5 agaaacttaaagaatccttaaattgtgaaacttctcagttttcttaattgttctaatgcgtattgtgaatctgcaagaggagagtataatactttcccca
aagaattgtcctaaaatttcttgtggtttcagtgttctgtcaaatactcactaggaaatgcttattgcagaagctcttttgaaaaaacatctaaataaat
aactataaaggaatagtcaaatctggtacatacattgatgagattatatatgataaattaaaatgtcctctaagaatttttttaaactgggaagatgtta
agtgaaaaggtatacgcaatttgacctcataaccataaatactcatgcacagaaaaaatatttgtaggtctgtttttttttccctctAAAAAAAAAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAACCGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGaaaaaagtttggcagaaaatacatttaaatgtcttcagtggttacctctggaatatgggattatctttattttttagtaagtttttctgagtg
ttttcccaagatttgtggaatgaatgtgcaattattttaaaaatcacaaaatctatagatgtcattttttaaaagaaaaaaacctgtgtgacagctttct
atctagctgtattcattagtgacaagtataaagtattatttactgttatgtttatagcacttaaaacatttttacagtgaacctaccataacatattcat
tttaatgttctatttaaaaatttttatgtagtaaggaaatggctttttcttatttattaaatgtagcattccattttcagtattatatgtaaat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:PFTK1:NM:012395:7/14
0 chr7 95224205 95224520 1000690 0 - 79717; RIP_Alu_chr7_095_01 CAAGTTAAACTTCCCCTCGCACC CATCTCTCTCTCCCCCTCCACTC SINE Alu Ya4 ttttactaaaattttcttaccatatggactaaaagtcatagaagattaaatatcacaggctgtttaaaactgatgtcttttatcactttgatcttcttaa
tattcatcattttcaagttaaacttcccctcgcacctataaaaggctcatgttgatggagataaattgctgaactgttcaaatattttcttaacattcta
acttgtcaaatataaataaggtcatagagaatcatgttaaatcgggtgaattatcatcaagagtctaaaagtctttttttctttacagtaaaagaactat
aaataaaaatacatttgtgtattttgagaaaaatcatttctgaaacatttcaggtcaacaaattagtagaatccaagtttcgttcAACAAATCCAATGAG
CAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
AAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACA
AAAAAAAACAAAAAAAAACAAATCCAATGAGtatattttatattttatttctatgatagagtggagggggagagagagatggagagagagagagagagag
agagagagagaaagtgtcctgggaagaagttccaaataaacagaaaacaaacagaaaagggacaggtagtcaggaaactctaaaattagcataaatactg
atgaagcacctactatatgccagacaacagagatacagctttctagtactgctaagctcttcctggtgtattagagaccattatcgttatttcatggctg
atacagaggaaagctgaggctcagagaggttaagtgacttgctcaaaattgcacagattgtaataagtaaagccagaacctaactcagatgtttgataaa
agagctcaaatgcttc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr7 96360693 96361007 1000691 0 - pAlu7-96120589; 238362; RIP_Alu_chr7_096_02 NA NA SINE Alu Ya5 gatgcttatatgattatatttgtaaaaagttgcattttctgccctaaataagcttgacaattatatgtcacaatgtctgctttgtactctttttactctg
ggtgatttagtgggagacctagaggcaggatggggtagtggagagctcaaggggtttagaggttgagtcagagcttagctccaaccccagctgtatggtc
tggggtcatttattttcattatttatgtattccttcacatctagggagcaatgggctctgaatatgtactggaattagagattgacaccctacccataca
gagcttttaggcggagagtcccctatctgagttctgtgggtaggataagggggtggaggagatcagggaatgctccccagaaggtgtAAAGACTAGCGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGACTAGCGCCagaggctcatgtaggagttagccagtggaagggcgggggtgttgtggaaagagtgcagtagacagagataat
gccatatgtgaagacccagaggcgctggatctgcaaagactcattccagtggtctttcagcctcatatatatttgttttgagacaaagaaagatgtaggg
ttttgtctagaactagaatctttaaagacaaacttcagagatgagattaccaatggtatctgttatagttatcagtgggtctcattcaaattttctcttt
ttagcccaaagggttcctggtaatgtacaaggtggaaacctaaggctttatttcgagtaagaaggaggaacttcttaggttacatcagcactcttgaagc
tactgaggttgcaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 102275957 102276279 1000692 0 + 8120; RIP_Alu_chr7_102_01 NA NA SINE Alu Y attggttttagcctagaaatgtataatcacatagcatctctctatacacaatttgggtgtaataaatacatatacacattgacatatgtatatgatctaa
tatataccaaggtgtatacatatatttaatttacctacatatactagacatagatgtacctttacatatatttgcatgtaaacacacatatatgcacact
ttcactgcatacacacctgccagtccttctggtgcatcctaatgaaacctgattttctcctgctaatgacattagcacctggctgctaatgacatttctt
aatcaactacctcaacctgctaacactgaaataattagaaatttttgtctagctgcaagattttcatttagagataatctgcatAAAAAATACACATTCG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCAAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATACACATTCGtgtgtacggatattatataaatgtatttatattatgcttcattctaggaaagaggaatcag
aaatgcaaaccagattaagagtataaaaagcaaccagaggccaggcacggcgcctcacacccataattccagcagtttgggaggccaaggcaggtgcatc
acctgaggtgaggtcaggagttcgagaccagtctggccaacatggtgaagtcgcatttctactaaaaatacaaaaaattagccaggcatgatggtgcatg
cctgtaatcccagctactcgggaggctgaggcaggggaatcacttgaacccaggatgcggaggttgcagtgagtcgagatcgtgccattgcactccagct
tgggcaacaagagcgaaactcca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:FBXL13:NM:145032:17/20
0 chr7 103250316 103250624 1000693 0 + 17827; pAlu7-103009708; Yb8AC1392; RIP_Alu_chr7_103_02 TCAAGCATTTTTCCACTCATGT ACCTGTTTTTCAGGTGGCAG SINE Alu Yb8 taaccttctaaattttttattagtctaaatagcattcaaaaaccataaatatctaatttaacaatagaaatattgttaaactctagcaagtttaaacctt
cataatatttagaagaggaatgtatgcaatgtcatttgaattagcaaagaaaaactaactgcaaatcaaaaattcaaattattgataaaattttgttaaa
ttaccaaattggtatttccagagcacctaagatactgtaatataaagctagctgtcaccagcacatgcctaaaggtagaaatggcagagtataaactcta
attctataacataatcttctggcatattcaagcatttttccactcatgtaagcatgtattcattcatctattcaacaaccaatgtttAAAGAATTACTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAATTACTTTgcctaaatattttcataatactacctgcaattgaaatactagaaatacgtactcagtattctgccacctgaaaaacag
gtttcaattttgtatgtttccttcagctttgtctacacgcaagttattttgttcttaggtaattgcccttttatccctaataattttttacttattttgt
ctgatattaatatagtaacagtagcttacctttggttagcacttgcctggtatgttttttccatctctgtactttcaatgtttttgtgccattatgttta
gttttatctcttagaaacagcatactgctgtatttttgtaattgcattctcaaagtcacagtgtttcgcctggtgaatttaatctgtttatatttattgt
aattgacaa UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 475 154 NA intron:RELN:NM:173054:3/64
0 chr7 103916765 103917032 1000694 0 - 15419; RIP_Alu_chr7_103_03 NA NA SINE Alu Ya5a2 atcatccatgtacggttttcactgggccagttccctgtcctcacacttttcagtacctagagtggagtaacctttggttcattcccaccttcagactctg
gtttgatctcactcctggcaagggggatctgaaagggctgcaggtcagttctttggaccttgtgttccctttctggtagccagtacattaatttattaaa
taaatatttatggagacacactagatgatggggatgcaaaggaaagagggtattagagggtaggagctgaaatggaaagcataagtaagacttcattagg
ctctgtgctgagtaatgtacatcatctgcaagataatttgcaagacccagtgcaaaatgaaaatgcagagtcccttgttcaaaacttAAGATTTCAGCAC
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGATTTCAGCACagtgagagtagagcagcaa
gatttcaaggcagtgagaataaagcagtaaaccaagtgggggtcccttctgagcatgggacactgagtgactacacgggtcacatgcccatgaagccagc
cctggtcatgcaaccccggttctctttgcctgaaatcctagacttccaagaactcaaaacctgctttctcttgccactttctactcattctcagtggcaa
aatctgaatccttcttagtgccaacagactttgcctgctttgaactttgctgtgtgctctggattctcaacatgctgcgtccttgtggctgtgattcctt
gaccctgcattcacacctcaactacgcttgcagtctgttgctatccgtctagatgctctacactgtct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:LHFPL3:NM:199000:1/3
0 chr7 105253298 105253299 1000695 0 + 238047; RIP_Alu_chr7_105_01 NA NA SINE Alu Y aaaaatttacctttcatgtaggatgcccctggaagattagtcctagcaaaagagggagtaaattgagcaggacgaagacaggcttccagtcagtggactt
cccaagacaatgaagagggaagctgttgtcacagaccagcagcacagtaggctgaggggctaatgggctccagaaaatacaggggaattgatgggtttat
tcagtatgtctgaccagctgggccaaaaatagtgacaggatatacccaatctagtggccaaaattaaggataaacatataggtaagaatgcaagtaaaaa
ccatgaggcaataattttaggacaagcaaaaacctacatacgagaggaagtggaattgccaatattgcctaatattggtagacaaagacAAAAACATGCT
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAACA
TGCTagacacaaggaaataaatactccttggctctgtaagtgaacagtatagatgcctctcactatccaaacacttagccttcatcttttagaagggaac
agatttggatacttttctggaatctgttcctcatcatttgaaattccactactcacatctgaaacccagaaaccaaataaatttggatgtacagtgtctc
tcattttctgagcttgttatctgacttagaaactggatagattcagatacttgatatttacaagcttgatgtaaccacataccttcactgagaatggaga
agccatagggaagggatggaggaaggaaagggggtggagatgtgtgacagccaaaccctccggtatgtgatggaaggttccgagatcctaaat Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ATXN7L1:NM:152749:2/4
0 chr7 107471230 107471362 1000696 0 - 33005; RIP_Alu_chr7_107_03 NA NA SINE Alu Y ataatgagaagagataataatcaccttgtaaaagattccttgcaaatgaatctatggtttatctagacttttatttagtttttagtgacagttttatttg
gtccagctaagtaattaaacatcaaagaacatgactttgttgagtatattgtcgagtattcttcattgtgtttttctcattccagatcgaaagtataagt
gaacaggcagaagtctccaaaaacaatgccttacagctgagggaaaaactgggaaatataagaaaccaaagtgactctgaagaagaaaacatcaatcttt
tcatcaaaaaagtgaaaaactttttgttaggtaatttaaaaatatatattaggactagtttttgtttttttccctttttaatgtatagtcAAACATCATA
CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCATAgccagttccaaattatattaattggaaatgacaagcctaaatcagaaaaatgatata
ccctttggtttttaattccttaatgagaataatctcaaaataccaactctgtgccaaaaaattacagctttctgtaaaagataaatgtggtaacaaatgc
tagaatttagttaaaattccaaacacatgaactttgtgtttaaagttattttatgttttttttaaggaaagttcaacatgacaattctatcagattccct
aacatcaggattcagtaattttctttgctgacagaaatgatatgagatcaagatatgctgaattttaattagatatcaaatatcatagggagttggcatc
taaaaaaaattattagctattattgactatttt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:LAMB4:NM:007356:29/34
0 chr7 116629254 116629551 1000697 0 - pAlu7-116382616; 912; RIP_Alu_chr7_116_01 NA NA SINE Alu Ya5 cagatggaaattagcaaagtcttaaaaagctcctgttagagtccaggtgatggggacaaaattgcggggtggaggaggagcttctccaggacttggcacc
tgactaaatgtgagagtgagggaaagaaccgaaggtgacaaatttttggcataagaaactagaataatgtgagctccttagctagggtaaagacaccaaa
ggaggaagaggcttagcaggggaaggtaacaaaaacagcttaaagaacctgcagaacatccctggagaaatggcctgaaggcagctgggtcttcaggtct
ggagcttaggagagaatctggagacacaaatgtgggtgttctgggccagagatggaagctgcgcagtaggagcacccgagatctctcAAGATAGCTTCGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCTTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGTCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
GATAGCTTCGAgcaaggagggagagggcagtgaatagagctccctggaaaacatgaacgcgtggcagcgcaggaaaggagtaggaggagagtgctgacat
acaggagtggcacagagagaaggtgtcatggagtcgagatggcctcaagacataagaagcaggctggctgggggcagtggctcacacctgtaatcccagc
actttgggaggccaaggcaggcaaatctcttcagcccaggagttcaagaccagcctgggcaacatggcaaaactaaggtggaggctgaggtgggaggatt
gcttgagcttgggaggtcgaggctgcagtgagccatgatagcaccactgcattccagcctgggtgacagagcaagaccctgtctcatggaaaaaaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ST7:NM:018412:11/15
0 chr7 124380262 124380263 1000698 0 + 8196;1104685584793; RIP_Alu_chr7_124_01 NA;NA NA;NA SINE Alu Yb8 gtggacagagttctttccttccctgtgcatccgcttcatttgcgctcagagtaacattgcgagggagagttcctagatcactgaagccagacataatcag
acagaaatttctggcacaatctaccagcaattttttttccccactatctcctgaggccagctctgatgtcagaacatacatccgcatccaggcaagcaga
aataataaaaaatatgagaagctagcaaaataaaatcaccaaaatgtgaggaaaatatggtttattaacagaagtcatcaatttgacaagaagttaatcc
cagtattttagaaaataaacagaagactcttagatgaatataattagtatcttcagagtgagccaaaatattacaaaaatattagaaataAAAGGGACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTACGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGGGACTTagaatgttaaacaagtataaactaatgctgtgtaaaaatttatgtcaataaaattaaaggctaaatgaaatagataattttcta
ggaaaatataaattacctgtattggctctagagtaatagaaaataggaattaatgagaatagacacagtggaaaagacagtaaaagacctactctttaaa
aaatggaaccatgcagacatgcagttttaagctggaggaagaacaaaatctgcctactcctaacaaagaaaatgagaaatagaaatgggaattttatctt
agatgatattagcagcaataatttcagactttataaaggataccaagtccattaaatattggaccaatttgatagagaagacagaaagagatcatcaccc
actaca Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr7 128096463 128096765 1000699 0 - 238996; RIP_Alu_chr7_127_02 NA NA SINE Alu Ya5 cccagttggatgtatgaaaattggcacttctggctgggtgtggtggcttacacctttaatcccagtactttgggaggccaaggagggaggatcacgaggt
cacgagtttgaaaccagtctggccgatatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcgcctgtattcccagct
actcaggaggctgtggcaaaagaaccatttgaacccgggaggcggaggttgcagtgagccaagattgtgccactgtactccagcctgggccacacagtga
atctctgtctaaaaaaaaaaaaagaaagaaagaaaaagaaaatcggcacttctttttccattccaggcatcagcgaggtaggtgtAAGAGCTGGTGTTCA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTGGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAGCTGGTGTTCAacagtgaccctattgtttttgtggtgggggcctttgcctagagcaaggtcagtgtggaatatacagagaaggatggtgtcta
gcagcaactacctcctttctgctgccctcatctgtgcaaaacttatcacagcctttgaagaaatggtggggggtgccacttgacagtaataggacattat
tctgaagccagaagctgtagacatcatgtcccttgaggctattctgagctgactgctgaagatgaccttcctgcactgagattgtaggatttggggaaac
caaggctgtatatttgctattgtttatcccatactgttcttgcaaacaaaacaaaacaaaataaaaatttactgggacaccattgccatggtaccaactt
gtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr7 137105825 137106118 1000700 0 - 11843; RIP_Alu_chr7_136_02 NA NA SINE Alu Ya5 tgtgatcctagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgaactgagattgcaccactgcactccagctta
agtgacagaggtgagatgccatctcaaaaaaaataaataaaaataaataaagaatgaatataattgcaaagataaaacgtaaacccagattgggaataag
aagcagaattataccaaaatggaagctgacgattacacagattcactccttatttactcattcaaagcttgcctcacataccataggtaaagtgggtaac
tctttctgatttttttggttcacttcaagactatatgatcttgaaattttaaataaataagctaaaaaggccctaaaatattttattAAAACCCACTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAACC
CACTGAGtataatttattgatttttataaaactaattctttttttttctgttttacttataagttttgggatatgtgtgtagaatgcgtaggtttgttac
ataggtatacatgtgccatggtggtttgctgcacctatcaacccgtcatctaggttttaagcccctcatgcattaggtatttgtcctaatgctctccctc
ccctgcctcccacccccagacaggccctgatgtgtgttgttcccctccctgtgtccatgtgttctcattgtttcactcccgcttatgagagagaacatgc
agtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatttcatttttatggct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DGKI:NM:004717:1/34
0 chr7 140760350 140760652 1000701 0 - pAlu7-140444196; 3181; RIP_Alu_chr7_140_02 NA NA SINE Alu Yb3a2 gaagcagatgctactactaaatatataaatacacatttataataacttagtgtatttgtgggtatgtgagtatagatagggagagagatgctcagagaag
atggagatagatataagctagacaatagctttctatataaacatttacatctttctatctagcaaattagtttgagaaggaaaagtcatttgcagatact
ctctagtgaagtattaatttccaaatgttatcggctgaccaactatatccttttatgtaagaagcatattgcagacattaaatactctattgtgaagact
gaaaacgacctaaactattccaacaattggtatatggttatagaaattatggtatactcacattatgagctattacacagccatAAAAATGATGTTTTTG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATGATGTTTTTGgagaaattaagtaatgttggaaaaaactagacatgaaattgtatgttttatctgctcctggatacgtaattataatgatta
taaacactaatgataataataagcaagaaaaaaagaccaaaaggaaatataccaaaggttaatagtgggagaagagaattttcaatgattttttttattc
ctctttatcgttttctgtggtttctaaattccccacaataataagtatgtgttgctcttacatcaaagaggaaaatacttaaaacattatttaagaacaa
acacagaaacaaacaaatgtccttgagcttacataaggaatataaggataaaggaagttcaaacagctcttttcagcatcgtctgcgcagaagctgtcct
tcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 152050347 152050648 1000702 0 - 2533; RIP_Alu_chr7_151_01 NA NA SINE Alu Ya5 ctcaaactccccacctcaggtgatccacccgtcttggcctcccaaagtgctgggattacaggtgtgaaccatcgtgcccgaccttgcccgaccgaatacg
tatatcctctctatgtatccactccatgctgtagccttggttcataccctcattctcctaccttagcttttgcaaatgttcctcctgaataatctcccaa
attccattctgtcttccgggggaaactgaaatctgatcatgttcatcacgtgaggatcactccaaagctcacacctgtgatcctaggtgctttgagaggc
cgagatgcggggatcacttgaagccagaagttcaagaccagcctgggcaacaaagccagaccccatctctacaaacaaatgaaaatAAAAGTAGTGATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTAAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTAGTGATCCagttctccgtgacctgcctacatctccagcctcacctcttcagcagcctgagtgcgccttgcaatctaccaccgcaaaacgttg
ctttacatctttgctcctcccttttgaaatcctctccttgctaacattaccccctcccttggcctatcccagattctccgcctctatagtctgaatgttt
gtggctccccaaaatgtatgtgttgaaacctaatctccagtgtgatggtatttggaggaggggcctttgggaggtgattagggcatgagagtggagtctc
atgaatgggattagtgcccttagaaagaggcctcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccggggtgggcagatca
cc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 2024423 2024461 1000703 0 - 6898; RIP_Alu_chr8_002_01 NA NA SINE Alu Sc tcgcatttcaatttaaagttattaccatattgcagctacttgcagtagtgattaaatgacagcaatctaaatggctgtcaatacggtcagacacatgatg
atatgttcatagattaaaaacctcatggccatttaaattattgtataaagatctttagtctaataagaggaatgatgttattttgtgaaatctaatacag
aatgcaaattgtatgatacaacaagagcattaaagtctatggagaaaaagactataaatatatgtaccacacgttaatgtggctattttatatggtggaa
ttattgctcattttaattgcattccatgtaacttctctgtctttcccaaattttatatactgcttgtttaatttttatcttttgtaattaAAAAACCTTG
CTTGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAACCTTGattacatgttttattttattttttcacatagagataaaacgcctttttcga
aagtagttttgtggtagtaaaagttggatatacactgaccctggtaagcctgctgaaaatttcagatagcaacccagacttctagaaatcagactcatat
ttgaaggagttttctctcattttggtgaaagtgaaaagccgctattttgtatctgccccgggcgtttgtggtgggagcccccagggcgtcatgggcctga
ggtccttgcgaccccaagcgaccgcagtccaggtgtctataggagagcttcctctcctacatcagaatatgggtccacaaagggaaggcttatccactgc
tgggggaatgtcattagctcagtcactgtggaaagcagt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:MYOM2:NM:003970:14/37
0 chr8 15431675 15431964 1000704 0 - 13355; RIP_Alu_chr8_015_02 NA NA SINE Alu Yb8 ataataatggtaccatgaagatgaaacaagtgaatacatgcgaagtctttagcatctaacacattataaatactacatattaactcccattatgatagta
gcttttctagaaatatttaaccaaatttcacacatcaacttatccactatgccagacactagggtaaacacaggagtaggggcaagaaagaaatgatagg
caaagtcctcatctgagaaaatgcacagatattcagtgtgtttcctttagagaagcaagcagatcagtgacttgtcaaactgtccttatagctgctgtgt
ggacaacagactaccagagagcaaagatgtaagcagagacttcagccccatattccaggtactgtatatgatgtaatacaggagtgtAAAAAACTTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAG
CGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAACTTT
TTCacagaattactatacatatggcaacctgtattctacagaagacattataagaggaaaatccctaaatgctccaataacacagtttgaaaaccaatgg
ctggaaatattaggcatttatatttaatcctagccatttttctaaacatattgatacgttagatagtacatctaagtaatgttagtatttttcaaacagt
tggctatttaaagcaaattttctataatgactgttttctaaaaatattctaaagtgaaactgattttgtatattacgatacatttcattcaattattttt
aaactgtatcttcagtgaaatttcaaattgctatgtctatgtaatcaacagtaattaaagtattgtaataatattgataaacctcaactt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 17006594 17006899 1000705 0 + Yc1NBC69; 1815; RIP_Alu_chr8_017_01 CCCACATTTATCAGTACCTACA CCTTGCAGAATAGCAATGAT SINE Alu Yc1 ttctttgagaaatattgggtatccctattctgtttcttttattgaagctaacttttaaattgtgatttttttttaagcgtgctgatgacatcacaagttt
agtaacagatactacacttcttgtacacttttttggaaagaaaggaaaagctgagctcaactttgaagatttttataggtgagcttatttttatattttt
attaaaaattattagcctactgaaatcagaaggatctttagaaattgtctagtacagcaatactcacctctttgttactttaattttaaataagatcctc
tgtataataaatacccacatttatcagtacctacataccagtggttatattgataattataacaggaagttactgaatttttttAAAAATTCCAGATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTCCAGATATCtggattgattgttatctcttgtatattcagaagaaagtatgttgccaattccttgtctcaataagctgcagtgatagt
aacaagtagtttaagtatcattgctattctgcaaggtacttttgttatccccatgttatagatgaggaaactaaacccctgaaaggctaggttatttgcc
ctgggtgctacagtcattaagtagtaaagcgatcgtgtgttcttttcattctcatttacagggaggaactttattaatctttgcatcatcatacaattat
ttccatataaccttttctaggacagtgagtatttgctcatctcctgttacgattactctttctttatctttttccttctttattacatttttgtcataga
ttcatg UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 524 210 NA intron:EFHA2:NM:181723:10/15
0 chr8 17309987 17310296 1000706 0 + pAlu8-17074912; 955; RIP_Alu_chr8_017_02 NA NA SINE Alu Yb8 agcaaacaatgtttagtgcacgcaaagaaaaaaaacaccagaagaaaatgtacccaaatattaaaagtggctaatttctacatgtagtccatattacttt
tataaccagaaaattattatttgctaaaggaagataaaagaagagataacccttggagctgacagtatactgacagtgaatgatcaagagaaggcaaacc
tcatggatctgctgatgtccgtctatcacagacagaacttgaaaatgagatcactatttgcccacggtgaaaacagaattgtataattataagttgttga
gttcaacactaattctggcagggttctaaaatgagttatttaatggacctttgtatgaacctaaaaagtggaaaccatcaatcagcAAGAACATCATGGA
GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGACCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAGAACATCATGGAttcaccgtcattatttcagaagacttcctttctttctttgatgagctctttggcgacgtgatgaaggacaaactta
tcaactgctagatgacatcaaactgagagaactactgaatctgctattaggatcaagatcctgagagatgggggcaagtggcttaagaagtcacttctgc
tcttggataagacaatgaatgaggtaacagaaagcaagctgattaaatagtggatggtaccaaactgacaggaacagcagatgtgtatcagcatccaaaa
aagagtaagagatgagcaaaagtctaaattcaatgagataatattcaacgtagagaagtataagatattatcatcaagcctaactactaatgggtaactt
gatgggcatc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MTMR7:NM:004686:1/14
0 chr8 20024558 20024857 1000707 0 - pAlu8-19789476; 18530; RIP_Alu_chr8_020_01 NA NA SINE Alu Ya5 tacggtcatcatgattattcattacgcacctatgatgtttcagttactttactagaaaaacaaagtcggataaaacctggctatgcctgcccagcaaccc
catataatagaggggctttgggaggtgggaggacttaagtatggtgggggcacaaagcgacctactcagccttcagccattcttaggggaaggggctgag
ggtagaagggagaaacttgtccagaggaggtgacatttgagctagaccttgaagcatagacaagagtagctttttctaaatgggagttgagcagtaaaga
cagggaggaatggtgggtgtattgagggaagataatggcagtggcagctgtaggcaggtctggcaaagcacagtcggattcctgtAAAAAGAGGCTTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGAGGCTTACAcactagccaggaagcattcagacctgaacttacagtaagtaaggaggagtcagacagacttgcatttatgtcttaacgtggctgt
atttgctgtatttgttcttctaaaacatctctttgacagccatgtggaggttggggaaatattgtgagcaggaagaccagctaggagccttctacttaaa
agtgacctaaaagggggcatgagcagatctaatggaggcggcaggatgaattttaaaaggcagaatttataagactttgtggctgggctcagtggctcat
gcctgtaatcccagcactttgggaggccaagatgggtgaatcacttgaggtcaggagttccagaccagcctgactcacatggggaaaccccatctctact
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 30511833 30512123 1000708 0 + 238531; pAlu8-30248390; RIP_Alu_chr8_030_01 NA NA SINE Alu Yb8 cttgtgaaggatactatacacgtaagcacaaaataaatacttgttctggtttctagggatacattaacataattttaaaataggatttcagtcgttgatg
tttttaacattccctgtggatagatcaagggcaagtagcccacggctagccagcatagatggggaaccagaagaacgggggtggtggagttgctgagttc
ctagagcaggagaaggccatgggtgagagtgggagctcagttcagacacacagcttcattctggaattcctcacgtggctcacagaagagtttgcttatg
tgtgtgtctagatttatgttatttgtgctatgaagtatattttggggttctgattcatcagtttcctaggtcagtggcaatctcttAAAACTGATAACTA
ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAAATACAAAAA
ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG
AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAT
AACTAtgacaagttagtagtttccaccttttttcgtcaaggactggaacctttgcagatttaagaaaactgacattttcttaaaagtcaaggaaatgtgc
taaactgtaaatcattgggtggattacataattctgaagtttatatcctcttgctagttttaagttagttgtaggcactttgtaatatcgttaattttaa
ctaacttttcttgaatatgttctgtgtgccagacatatgtgctaaggataggagataacagttttgtgaaggacatagacacagaaaaagaaaatttttc
gtataagcagtaggtgcagtgttcagggtacacatagcctgttttgggaggtgtaagaaaggatatctggtctttactggattttcaagag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RBPMS:NM:001008712:5/7
0 chr8 41398502 41398808 1000709 0 + pAlu8-41020191; 13335; RIP_Alu_chr8_041_01 NA NA SINE Alu Ye5 tgtaaccctaccatcatagcacaaagtcaaccatagataacacataaatgaatgagtgtgactgtgttcaataagactttactgacactgaaatttggat
ttcatataatttttatgtatcataaaatattacttggatacttttccaactgcttaaaaatgaaaaaaaaaattggcccatgggtcatataaagataggc
ggcaaaccaaattggctctcgggccatagcttgctgaccctcatacagaaaaatgaacactagatttagagaagtcccaggctggagaaccgctactttt
gcttgtacaatgtgagacactgggcgagtcaaatgagttcaaataaattcttagggccttgatttactgttaaagcattggattAGATTAACCTTAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAAGCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGATTAACCTTAAAAGccccttcagccctaaaaactctctagtggcttctgtttccagtggcttctgtttccagtggcctctgcatatggcag
actggttgagcttttaaaaaattcctttcaatacaaaatacattaaaattctgggtaaaataaaatgtcgttcaaaaaaccctcactaaggccgggcatg
gtggctcatgcctgtaatctcagcactttgtgaggctgaggtgggtggatcacaaggccagaagttcaagaccagcctggccaacatgccaaagccccgt
ctctactaaaaataccaaaattagccaggcgtggtggtgggcacctgctactcgggaggctgaggcaggagaatcgcttgactctgggggacagaggttg
cagtgag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 42705067 42705395 1000710 0 + 238640; Yb8AC1413; RIP_Alu_chr8_042_02 CAGAATCTCTGTGGCTTCCTG TGACCAAAATAGTTTTCTTCTGTGA SINE Alu Yb8 tggaaatatgtaacatgcaaagtgtgtgggcctgggtgagatcagaggccaggctggctcaaggtgaatcctgtactgagtccccagtagggtcacgcag
tccaaccgggacaatttccttttcttaataaaacagtggcttggtaaagctaacagaaacttgaagatttcaagatctaatacattgaactttcggaata
aaatcacagtgtactaatttcatgcaggaatggacagaccacaagttacgctggaatcctgatgattatggtgggatccattccattaaagttccatcag
aatctctgtggcttcctgacatagttctctttgaaaagtaagtatcacattgtttcttacttatggggaaaaaaataaatttttTAAAAAGTGAAAAAAA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA
AATAAATAAATAAATAAATAAATAAAAAATAAAAAGTGAAAAAAAggaaagtaagtatcacagaagaaaactattttggtcagattaacactaggaatag
aaaattctgattcaggcaaaatacttaaaagaaatattcaattttaaataaaaaaattgtttattaaaacagttacctggcgttgtggtagaaaagtcct
aaaatagggcagggtgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcaattcatgaggtcaggagttcgggaccagcctggcc
aacatggcgaaaccctgtctctactaaaaatacaaaaacttagctgcgcatggtggccggtgcctgtaatcccagctactcaggaggctgaagcaggcaa
attgcttgaacccgggaggcggaggttgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 481 140 NA intron:CHRNB3:NM:000749:4/6
0 chr8 54367450 54367751 1000711 0 + 19086; RIP_Alu_chr8_054_01 NA NA SINE Alu Yg6 gtatctaggtcttgttctttcttctatctttagcgcttagcctagtatttcacgagtagtaagagctgggtctgtggaagagctaagtatgcacacagtg
ctatccattcccaggagagtccagtgcttagaaatatccctggggcccagggaaatgattatcttttctcctctaagatagaaaagatcttagaggagat
agaaaagatagtcttttctcctctaagaagaaaatttatttttatagatgcttccccttaccacaatacatcaaaaatagaaaagaagacataaaaatca
ttcaaggcaatattatcaaagaccataaagtaaaatattttcttaaagtaacaaatccttgatattttcttatgtcaggtttgactAGAAAAGCAAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAGAA
AAAGAAAAGCAAAATCagctaaaacatgtctagacagtgccaagttctccctcaacttgctcttctgaccacaaatgatactttgggtgcttttatgcat
aaactctcgcctacattaatgtttgcagtgctctgtgttcataaagttgctgcccagaaaattatgagcaagaaaaatttgaaagtgtcctgaagagagt
gaagaatcacttgattttatgaacttgctctttgttgacagagtaaaataacacttaaagtatcattcaacctactctaccaaagtgcagtacagattta
aggaaattacatttaattcagacaaaaagaagagcttaacacaaatgattcaaaactcaatgatctatttggttcaaattcattatctactattagtttt
tt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 56563772 56564072 1000712 0 + 3422; RIP_Alu_chr8_056_01 NA NA SINE Alu Ya5 aagggatgtaaaatgatgcagccactttggaaaaactaaacatgctcttatcatatgatccaggaatcacattcctagatatttactcaagttagttaaa
aatgtaaactcctacaaaaatgtgcacacaaatgtttacaacaactttattcataattgccaaacctggaagcaactaggatgtcctttgatagataaat
agataaactgtggtacatccagacaatagaatattattcagcactaaaaagaaatgagctatcaagccacagaaagacttggaggaattttaaacgtatt
gtactaagtgacagaagccaatctgaaaagacttcatattgcggaatttcaactatatgatattctggaaaagaatggagagaatAAAAAGACCAATGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGACCAATGGTtgctggaggttagggggctgacaaggatgaatagatgggacacaaaagattctcagagcagtaaaaccactctgtatgatacta
caatggtggatacatggcattatacatttgtccaaacccataggatttacaacacgaagagtaaaccctaatgtaaacagtaggctttcgttaaaaataa
tgtattcatattggctcatcaatgtactgcatcggtaacaaatgcatcacaataattaatgcaagatgttaataataagggaaactggcagaataaggct
atggaaactccctgtactttctactcaattttcttataaacctaataccgctctaaaaaatagtctattaattttttaaagatgtaacttaatagtaacc
a UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:XKR4:NM:052898:2/3
0 chr8 57129886 57130023 1000713 0 - 5183; RIP_Alu_chr8_057_01 NA NA SINE Alu Y? aggcgggtagatcacctgaggtcaggagttcgagaccagcctggccaacgtggcgaaaccccatctctagcaaaaatacaataattaggtgggcatggtg
gtgcgtgcctataatcccagctacttgggaggctgaggcaggagaatctcttgaacccaggccggaggttgcagtgagcccagatcgcaccactgcactc
cagcctgggtgacaagaagaaaactctgtctcaaaaagaaaaaaaaaaaaagaagaagaaaatcaatgaatttgaacttagaaacaaaatgtatctgaaa
atgcaatgccttgaatttcttgtctcgctcctatctggtacagcattccctgaacacaagaagtttacattttttctttctgcttAGAAATCAACCTGGG
TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCG
AGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATCAACCTGGGgtgactgcttttgcagttaagtaggtggttaataaaaactaaatttt
tctctatttgaataactatgcgtatccctgataagacactcaggcaccttggtagccactgaaatgaattcaccatacatcaaactaatagaagcaagag
aaacaatctggcaaagaaatactcaatgaaataaattccaaacatctgtttccttttatatttattaatcattgcattctcacaatatttcagccaaagc
ctggggaaagtgagaactctacctatttaaataagttcaacaaaaagcccataataaaatatttagcataagacacagatctaaaaaatgaaaagacata
gatctaacaaaactgcaattaaagaactgtgcattgtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 61689351 61689352 1000714 0 + 30856; pAlu8-61249965;1104685422571; RIP_Alu_chr8_061_02 NA;NA NA;NA SINE Alu Ya4 ataactgtaatgttcatagcattgacttttagcagttgagaagaaaagccacattttagctacctcatatttctcagttctaagagaaaactaaaagtcg
cttgtttacaagataccctgctctgtagcatctgttcaagatatttaaactgtccaaaatactggtcttacctaatttttatcatgccaccaggtggcag
catgttatgtaaggaagtaatttaaatattctattgaagatcatttattttcaatattttgccttaaaaactgcccaaccataataaaaaataaaatagt
atctcatgtttccctttgcctgcattctctccagtctattttaaagaccctgttagcacaatatccgtgagacctgccttaatAGAAGAATGCAGGGCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGAATGCAGGGCTGagtttttttcttccatctttatggagatttgagccattgggcttagattctgccaactaaatgattttattccta
cctaaatagttcctattgttcagcaacaatagtcctcctcatctttgtgtcttccatggtacctacagaagttctgaatatgtggcaacgatttttttct
taatagagacaggggtcttactacattgcccaggctggtctcaaactcctgacctcaagcagtcttcctgcctacgcctctttcagagtgctgggattac
aggtgcgagcctggccagtgacaatagttttaacaggtgcccttgggtaaatgtcagtgatatgtaagatccacattagcgtgtgtatttactgaatgtt
tatttgaa Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:RAB2A:NM:002865:6/8
0 chr8 63092705 63093009 1000715 0 - 239003; RIP_Alu_chr8_063_01 NA NA SINE Alu Ya5 aaatctataaaagtatcccaaatacaatttctactaatttgcagttatgccttttgaagctgcctttgtgtgccagagtattctttcagtgacttttttt
ggagcgattttgaaggcaagagaaaaaaatatctactcagcactactcagaattcctttagttttattttcagtttctcaccatacagaatcccctccag
ctagagcagctgtaactaaaagtctgcttgatgctgcactggggttttgctttctcactctcctgtgcccacttaggtttaagatatggggctcaccatt
aaatgttttctgaattagtaactgagaatagattaaatgaggaaatgaaattattatgatgagagcatgggagagtggttaccataaacaacAAGAATAT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAATATatggacatgactccagcaaaagaaaagggaatatatagctgagattataacagtgagagatggcagaatatgaggtgcgtgttaaaa
atacgactgtcttgagatccataagatttggctctgagagttgtgggaatctctcaggcgcacattcttgacaataaacaattgatgtttctggtatttt
ttctttgttataaaatttactcagtcgacactatctctgggaagaatacataagaaatcgtctctgtttttggtatacaatctagtaagaagcctgtcaa
gtatacagacttacaatcagaaagacccaaaattgttttttaatctaacttgttcattttataaataaaaagactggagtataaagaggttcaacaagcc
catta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 72077134 72077135 1000716 0 + 16002; pAlu8-71637776; RIP_Alu_chr8_072_02 NA NA SINE Alu Yb8 tcagagaatacatgagatcagccttaaaaaggtagattagtttgggttccacttttatcatatatatatattggaaaatatctatcagaatgtttcatat
gtttaagtacaaatgatatgatgataataaatcaaatcttccaagtctttaattgaatactggctatcatgaggtcgtaagagaaattccactactgttt
tcaggccattgtgataccatataaggaattggctgtcattttagtaaatgtagttaattctatcatgtcctaataggctgggtcagtggtcaaattgttg
gagagattggggttgacgatagtctataaactacgaggaagggctcaccatatgtggtaagagttttgtttcaaataattttaatctAAAATAAAAGCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AATAAATAAATAAAATAAAAAAAAATAAAAGCTAagccgtggtaggtttttgttttttttccgaaataattccagttgtgtttatctatattatttttct
tttagtatgttctgtctctcaattaacagcatagtatattagctttccaattctgtttattgtatctttaagtaaatttaatttatataaaatagtctaa
aataaagggcaaaacacatacattcaacaggcaacttctgttttatacggtctccctttttactcttttttattgatactattgtaactacaataaaaac
acacttgcctttaaatatgccattcggtgaagcttcacaaccactacaagtcctagtgaaaatgctgaaactcatgctttgagaagtgaatgatgatcac
ctaagctgtaaaaaaactcag Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 76289458 76289767 1000717 0 - 79754; RIP_Alu_chr8_076_01 CTGACAGACACCTGAACTCATCC CAGCATAGTCACTCCTGTGGAAGAAC SINE Alu Ya5 ctgtgttggataggcctgagccagaattatgctgcaggtgaaaagagggaggcaaacttctcccttcatgtattattttgtaactgatttacatgtgatg
tgggatgttttctggtcagaaagtaattggacgtttccattactgatattcaggaatatacaaagaaggctaatgaaacgttaaatttaaaggagaaaca
atggatttctgagagaaaatgcaccacaaaccacagccaataatattttagcatattgcttgttaagtggtgggtctgacagacacctgaactcatcctg
accagacagctggttgatatttttgccatgtgagaaattgatggggtcaggtacaaaggcaacatgagtgcttcctccaatatgttGAAATATAGTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATATAGTTTGAatagacataatgcataacctgctggttcttccacaggagtgactatgctgatattcatcattaaagaggttcagaa
attatatatggtaattttaatttgtaccattgatgccaaagcacagtcatattactgcatagaaagaaaaataagactatttctctaattcttgctcagc
ttccataggaaacatgcacagagaagcaatcaagtagagtgtagtggggtaaaacagccctcagtttgagacagttttcctaattgataactgtgtgtga
ccttagacaagttatatatatttgctaagatatttcttattggtccagtgaggatcatatacctacatcataaatatgctgttaagacaatttctgccat
gtggtatatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr8 91584607 91584859 1000718 0 + 238711; RIP_Alu_chr8_091_01 NA NA SINE Alu Yb8 tcacacataaacacacgcacaagtatagagcccagctgctctggttgaagtggaggggacccacagacttcctgctatcctacccaatccctaaaatgat
ccctgagacaccaccaggagttccagggttccacagaacacagtttgaaaactcccattgtaaggtaatttttaagaatgctaaagtaaatttaaattgt
atgactatcagacaaaagctggggaaataactaatggatcaattcaaatggtttcaaaatacaatcatgtcaagataacctctttatttcctgtcagaca
ggcatcatgctagtcctcatatctttgtaatcccaggaacatcagactctaaggagcggccatcccatatgtcacctcatgcttGAGATACGGTGTTGGG
GGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCC
AGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTCCGGCCT
GGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGATACGGTGTTGGGgagctaactgttcagttacttcacttcctct
agctccatagttctcaacccttgctacacataaagtaattgatgaactttaaaaatatatatacacatatacaggtcacacccacgaacaaatgattcag
tcagactctggggactgagcctgcctggccctgtttcgagaacccatcctcaggtgatatttatgtgaaaccagagtacagagccaccaagaagaactcc
taatttcctttttctgttttcaaaagaatatatatctagttgaattttgactcctcaaagttgttttcctctaaccatgcattacacagggacccacagc
ctatcagacattatgccacacctaaaatgaattaactcctataaagtaaaaac UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 95863898 95863899 1000719 0 + 18601; RIP_Alu_chr8_095_01 NA NA SINE Alu Ye5 tttgctacataacagaatgccacaaaacttagtggcttacaaacaataaacatttgttattccacaccatcttgagaattagcagggttagggtgctggg
gaggattgttttggtctgggccagctccactgggactggatagtctagggttggctatgtgtcagctgaggggatcaaatttacttggccctctgtctct
catcatctagcaggttaacttgggcttgtttacaaggtagttgtagaattcccaagagcagcaaaagagggcaattctcaatgtcaagcatgttttaagt
cactgcttacacggtgcttactattgtcctattggccaaagcaagtcacatgattaatactagcattccctccaagaccatgacAAAAATGGCCACAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
AAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
ATGGCCACAGTAtaaccagtctattccatggatggaaactatgaaataactacattgaaatttattaaagacataaaagaagataagaaaacatgaaaaa
gtgatgaaatactatcaaaaaagaccagaaaaatatgggaaaaaagacaaaaagtgtttctagaaatttaaaattggtttatagaataggtatatagaaa
caagaatagattttattataatgtcttgttactataacatatcttctattttatacaaatagttttctttagatcacccttaactattacccattaatac
tttttgtaaattctgttttctattgttgaacactgccttgtgttatcattaacaaaagaggaagttacatctctgtatgatttaccacagtatttt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DPY19L4:NM:181787:16/19
0 chr8 97167265 97167601 1000720 0 + pAlu8-96766781; 17182; RIP_Alu_chr8_097_02 NA NA SINE Alu Yb3a2 aaatacgctcaacctaattctgttttattgcgtggttttcatgggtcacctgacgtgtctatcaaaggagtggaaggtagtttcctcaagaatctatgag
ccacaatcacccacagccacctctcagtgactgtcacttgtgtgaatgagctgggacccaggctctgggtcattccactgatatggcttgagaagcacac
aaaatgctgtctttcattcttctgccaggactcctggcccacagtcagaatatggccttctctgcactgcagccactgcacttgcattgatgataacaag
ggctatccctcgcagggttcctttcatttgcaggtactggcctaggtgctttgtatacgttctcttgtccccataataataccttGAAAGAGAGGTATTA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAATCCGGCCTGGGCTAAACAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGAGGTATTAttgcccccattttgcagatgagcaagctgaagctcagaaaattgaaat
aactttcactaattcagtccacgagtacttatgactctgctaggcattttgccagactctcaggatacagagataaagcaccaccaccctcaaggtgctt
gaggtctggtgagagttccagacacagaaacagataaatgtatcacaggaaattaaatgatagaactacgaacagggtattgtgggagcagagaggaagt
gcaaggaatgcggggagaagaaagttcagaggaggcttcctggaggaggtgacacacgaactgagtcttcaagtctacataggactcaggtacagagatt
gaggggaggaaaagcaattcctgggagagagcaaggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 98852638 98852956 1000721 0 + Ya5-MLS23; 11223; RIP_Alu_chr8_098_01 NA NA SINE Alu Ya5 tgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaaccggcacattgtgcacatgtaccctaaaacttaaagtataatttaaa
aaaattacaaaaaaaaaagaataattgtggaagttgcgaatcttacaacctctgggataacggctggtaatatttagaattccagcccctctcattctaa
cttggtggctggtggccttttattcatttcacaaggacagtttagctttgaggaggggctattatttaaattataaactaaattccttcctaaggctagt
tggggctatgcccagtaatggacaaggagagttcagagattagaggcaagatagagttagttagagctgatgtctttcacttgtcatAATTTCCTTAGTC
GCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATTTCCTTAGTCataactttgcaaaggcagtttcatttgttcttttgaagccaattcccatactctcttgcacccaaaca
aatacaactccaaagacattgacactaagctttatttaataacctttaactgcaatggcatttttctctctccttttttttttgttatccagttaggttc
cctctattctttattttcttatctagagaaatttggcaactgtctgtaagttcagatcttgaacagtaagatttctaaaatataaaattcccttgaatca
atgattgatttgcctaataaatatgaaattctggtggggagggaaaaaggaaaggtaactatgggagcttgctgggagtttaattgttgaaaaagtctca
ttcaagataccatttccta UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr8 104452090 104452395 1000722 0 + 4197; RIP_Alu_chr8_104_01 NA NA SINE Alu Y ttcctcattcgtttatgagagtagcccaggaggcatctacccctcccaacccgccaggattgctgagaggacagagtacgcgtgcaaggttttgcaatgt
gccagagcttagtaagtgttagcacttatgaaaacagcgtttatatatcatttgggtcatgggactcttggaaaacctgatgatacctatggtttcttcc
tgcctccgccccacccccaccttccagcctccaaaaatgtcacctccaaaaaacaaataaggcagggcgcggtggctcacgcctgtaatcccagcacttt
gggaggccgaggcgggcggatcacaaggtcaggagatctagactatcctggctaacacggtgaaaccccgtctctactaaaaataAAAAAATTAGCCGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATTAGCCGGGcgtggtggcgggtgcctgcagtcccagctgctctggaggctgaggcaggagaatggcgtgaacccgggaggcggagctt
gcagtgagcctagatggcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaacaaacaaacaaacaaaaaacaaataagactcgcc
gacccatgccatagattgacgacccttgaaggtggctcgtgtacccaggttaagccacgtgtctctaaaatgttcatttaggcggcgctgtgttacctgc
gggaatccccgacctgcggctcctgaccacgggccaccccgcccagaccctgcaggcgggctctccacgagggtctgcgcagccccgcgggggtcctgac
aggccg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA promoter:CTHRC1:NM:138455
0 chr8 107580285 107580594 1000723 0 + 7118; pAlu8-107179801; RIP_Alu_chr8_107_01 NA NA SINE Alu Yb8 gttttgatcaaaaagctttatacgaaatccagaatcctttaaatcacagcatggaccatagaaatgtgttttatttaagagactttaattcaagactgtt
gttttaaatcatgattgcatctttatgtttcattcaactcacatgttaagctgtgtgtgtgagtgtgtgtgtgagtgtgggcgtgtgtgcttgtaagtgc
atgtgtgtgcatgtgtatgtgtaaattacatgatgcatctgggcactcattgcagtatgtcacttaaaaactttaaaaaaatgtttggagttaattttgt
tccaagataattttatgtgccattagttcatctcatcgtcttatataacaaggaaccaactgatgcaggttttacctttttagctAAAGAATTAGGAGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATTAGGAGATgtttaaatgttatatcctgttttccttgacaactataattttgcttgggagatgattaccagaatgactgctaaa
ttactatttttctattggtctaatattttattcttatgaaaaatgttatttctagtggtctttattgaagaccagttgatgagggtcctcctaagtcagg
ggaaagagtgtatacgtttcatgtaaaatatccttcctctttgtaacccaaacctttgtatagcttggtttctctttcttagtctatgttgacagcagta
caaatagcataatagattcttctctgtatatttagagggtttttttccataaacttatgtgatactttgcttttactgtgtaggaatgatgaaaacacac
aacagaccca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:OXR1:NM:018002:2/16
0 chr8 109799352 109799662 1000724 0 - 19560; RIP_Alu_chr8_109_01 NA NA SINE Alu Ya5 ctctcacagttcaggactcaggtcccacccacatttctctctctctgttagtgttgtcaaaaatcctagtgtatcacagctgttctgtttctagcaggtg
ttatcactaattagctcttcaaaactaaacacaagaggagtctgcgctcttccccaagtactatcagccagctgctggctttctgctgttgtgaacagag
gtttgcaggcattttcattcatgtaccactgtaggtaataaaactctgagcacactccaatgtatatatatttatttaaagtatatccatatgctgtatc
aatatactatattaatacactgcatatttttctaactggtaccactctttcatctattcacagtacagcagccagggggtccttttAAAACCTAAGTCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACCTAAGTCAGatcatatcactagaaaccgccaatggttccccatctcactgagaacaaaaccctaagtccttaaaatgcccctga
aggtcttatacaaccagttcaccacctctcattcttcctcccttacgccactcaaggcacacttacctcctgctattccttaagcatatttccaaggcat
atttcccactcagggccctgttccctctacctagagtccttttcctccaaatccccacatgaccattccctcgccccttctagtccctgttccaatggca
tctctccagtaaagccaccttaatcattctgtttaaaattgcaactcactctcccatccccagcattccctatctgcctgtcaccctttgtttctctctg
gagcatttatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 110579497 110579805 1000725 0 - pAlu8-110179004; Yb8AC702; 9160; RIP_Alu_chr8_110_01 TGTTTGGAAATAAGCCAAACAAT GGGTAGCAACCTTTTTCATCTTT SINE Alu Yb8 agaagatttgtaaaagactgtgtacttgcctgagatgtccaaaaggccactgatggcattgtaactcatgattcctgcatggggctttcggggtgccatg
ttatgagctgaagcaaaggtaggccaacaaatcccacttctcccaccttttaccaaaaaagaaaaagttaatgaaaattgaatatgcactcatatgaaca
acaacattaaagtttcaaatttttcacctgatggagatctaggactccgatgagcagcagtgagttcaatattaggatcatcattagttaggacatcaga
gcaattaaacccagggctacttccaacaattaatgagctctgtttggaaataagccaaacaatatagcattaataatagctcttactAAAAGAAAACATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAACATGataatgaatagtactaaattctactgtagtaaataaaatgcaaactataaattcaaaaagtggatcattcattaaaca
aagatgaaaaaggttgctaccccaactggaaaagcactaagaataggagagggaagacagacatgtaaataattacatataaggacatgttatgtttctg
tgataaatacatccagggaacagtaggcacaaaaaagtggaggaagtgtcattaccacctaaactggctcagaaaaaacttcatagagggagtgaaaatt
taactatttcaagattagcaggtgataagcaagaagagggaagggaggaggagagataagaatgaacagcttttttgttgggtgcggtggctcacgcctg
taatcccag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 482 161 NA intron:PKHD1L1:NM:177531:65/78
0 chr8 112237415 112237754 1000726 0 - pAlu8-111836927; 3230; RIP_Alu_chr8_112_01 NA NA SINE Alu Yb8 ctacattgcctataatattgagggattgaaggtggcagaagtgtaataagtaacaaatgcaacaaatcatcatgattgctatgaagatttaacactacat
gctagaacatcttttcaggagtatttcttagttgcaatgatcataattaaacagatatttctcttcttatagttcagaaagtatgatagcactaagaaga
gcacattaggatgaaataatatattcttgcaataatttgatgcaaatatatagtaaatttagaaaataataagagttttaataaaacaataagagtttaa
taaataaacttatctaagtaaacatgagtttaaaaaataaaacaataagacttttaataaaatttagaaaacaataagagtttttatAAAATAAGATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGATTCCaatatcacactctaatagtgtaaaaaggcttaatgttaaaaattaca
cagtgggtgcataatatatacctgaatttgtagaagttttatactattttaagggtaatttgataaaaatcatgaaagaattacatgaagttatacctaa
ggttatatttaaaattatattagtgtggttgttgaattattataggaatagtacgtatcttaacataataccattttagataataaattgtcaaaggaaa
aaaatttagagaagttttatataaaaaacaaccaaactgcgtctttctggagtactaactaaaagtatcttggaaacaataaatagatactctagttttt
atcataatccactttgggatatacagccagcacacagtag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 113154613 113154929 1000727 0 + 298; RIP_Alu_chr8_113_01 NA NA SINE Alu Yb9 ccctcttcacactcttagcagctacctttggcttctacaaatttatctccattcaattctcatgttagcttgcaggatatgtcaaattcaccaacatttc
tttaatatcctcagcattatattcagagaagtgactcagcaaaagcctatgctatttggccatttgtctatgattaaaaatgtaaatttacatcacagtc
actctatatgccaaatgattatttcagacaaagagtgctatagaattaaaaacctaaaagaagtaggattagcatacaatctacataatgcccaatatgt
caaactcatatccaaaagagctacaaaataaatacataaataaagaaacagacaaacaaatgcaggataggagactccctaatacttAAAAATAACTGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAAACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATAACTGAGagggccccagccaaccacattcctaccatgggctcataattctagccacggggtagcccctcaaccttca
tgggccctgagactaacatagagagcccccttgaaaacacactaaggcattgctgcagagaagaagctgacactgggtccccaaaatccttgagtcctta
gtaacagcacaatgccccagtggtgggacaggagctcagcccccaccattctgtgtcctgccctgcaaccagggctgagacaggagccatggacagccat
cccacacgctaacacccactattgcagaagggcagccatgcatttttatgcatgcggaggacaaattccactctacacaaccagtgcagactgcccatct
ccctcacccgcccctcc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 116557410 116557721 1000728 0 - pAlu8-116156926; 238954; RIP_Alu_chr8_116_01 NA NA SINE Alu Ya5 aatattgaggacctaaaattgcaaagtctatataaaccaagagctgcttgctggttaggcagaaaccaaatttcctcctagctctgccttgcattttcaa
tcagaattacttgtttgttacaatatgattttcttcaaaaatagatgctctgaggcaaaaggcgagccacaggctatatgttgaatagaaggttgattag
ttggccgaacttcaggagtgggagcctgaagccatgcttcctagggaaataactccctctctgatagtttgttttgctaattactagtcccaatttgagc
tcaatattaccaacaattgctttatagttacttatgagtcaggttcaacattttatgctgattttacttgcacttaaacaaatAGAAAGTATATTTTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAGTATATTTTCTGaacacctctttttggtaaagcatgttgtatatttgataatttacaatttagtttgctgttttcttttgttc
tttgttgcttactttctgtgcttcaagtttattgaacttcaagtttattgagctagaacttatcacagatggtaaatgtggaaaatgtgatggatgtaga
actcctcccacataggagtgaaatgggagactacttttgttttgtaattgatagtatgaagccttacatggactatcttcaatatgcattcattacatga
tacattcctggtattaaattgtaatcgtcgagatagcactgctaaacgagatagcactgctaaagtttatgtctgtggtttactatttagtataattatt
cttagcttaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TRPS1:NM:014112:5/7
0 chr8 118292724 118292990 1000729 0 - 7894; RIP_Alu_chr8_118_01 NA NA SINE Alu Yb8 catgaactttaaaatcatttttttctagttctgtgaagaatgtccatggtattttaatgggaatagcattgaatctataaattgctttgggcaaaatggc
cattttaatgatattgattcttcctatccatgagcatggaatattattccatttctttgtgtcatctctgatttctttggacagtggtttgtagttcttt
ttgtagagatttttcagttcccttattagctgtattcctaggcattttattcttttgtggcaattttgaatggaagttcttttgtgatttggctctcagc
ttggctgttgttggtgtatagaaatgttagcaatttccgcacattgattttgtatcctgagactttcctgaagttgcttatcagcttAAGAAGCTTTTGG
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAAGCTTTTGGgcttagatgatggggttttc
tagatacagaatcatgtcatctgcaaacattgatagtttgacttcctctcttcctatttgaatgcccttaatttctttctcttgcctgatttctcttcca
gaacttctaatactatgttgaataagagtgatgagagagggcatccttgtcttgtagcggttttcaaggggaacgtttccagtttttgcccattcagtat
aataatggctgtgggtttgtcatatatgactctcattattttgagatatgttcattgaatacctagtttattgtgagtttttaacaagaagggatgttga
attttatcagaagcctatatatttttcccaaacttcgactcatcttccctgttcttcattttccaca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 121923941 121924242 1000730 0 - pAlu8-121523451; 7437; RIP_Alu_chr8_121_01 NA NA SINE Alu Ya5 cattatttgcacaactggatttagccctcctgaagctagaaaccttctgaagttttaaggtttttttgaagggttcaggctttacacaatggtctcagct
acaatcttttgtttcatacgagcccattttctcctgagccagtgtgtaagcctagcaccctaggttaccaaggcaagaagcacccactctaggacttgca
cagtttgacgatattgacacactcttttatagctctctgggcatccagtgtcttcccttatttactgataatctaagttatgctttcaaaagatataact
agcactatgaggtgtttttgttaggagagtttcaggttgtctatttgacgatgtttccagatataaaagtgtaactatttttttaAAAAATATGTTTTCC
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATATGTTTTCCcatggtaaaatataggttgtcttctttctgacacaaatagccattgaaaagctgtattgcaactggatgacaactggcaaagg
ggaaatataattttcctgtttatccctctttgtttctcaatgtacttctgttaagctagaggtctaagagcagagaacatatttttatttgagcattctg
agtcagattaattagtccatgttttcaaaatgctttttgagatgaaatctttattcatcagcaaacctgggggttttttttgttatcataatgatagcac
cttttaaagatgctaattggcccacctgccatgaaagaacaacttcacctttgcatttaatgactagagacaacatacctaggcatcctatttattaatt
ca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 130976864 130976865 1000731 0 + 238394; pAlu8-130578553; Yb8AC1416;1104685372411; RIP_Alu_chr8_130_01 AAAGGGCAAGAATAAGGCAA;NA TGGATACCACCCTTTTAATGC;NA SINE Alu Yb8 caatcgatcctcccacctctgcctcctgagtagctgggactacatgcccgtgtcatcatgctagtgtgtgtcggcggggttggggtgggggtgggggtgg
gggtgggggcaggggcagggggaatactgttgttgtttgtttttttttgtagagacaggatctcatcgtgttgcccagactggtctcaaattcatggcct
taagcaatcctcccccaccctggcctcctaaagtgctgggattacaggcatgagccatcatacctggcagctttagaaattctggataccacccttttaa
tgcttatatacaaggcagatactttcttctaggatctaacatatcttaactttgtttatggtgttgtttgtcataacagtccagtttttAAGAAAAATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAATGAttactgtttaaataataattcttcaaaattgccttattcttgcccttttattcactcatgtgattgtcaaattctac
aaaaaaattctgatgggattttgatttgattttgcattaaatatataattgccatctctataatttcaatcattttgtcatttaatctatgaatatgaca
gattacataaattcattttctgttgctaaaccattcttgcattcctgagatcaagtctgcttggttggttatttatttatgtatttatttatttatgaat
aaatgaatgagggtgaatgaataaatttgaaacacggtcttgctctgttgcccaggctggtcttgaactcctaggctcaaggaaacctcctacctcagcc
tcccaaggtgct Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 60;NA 500;NA 177;NA NA;NA intron:FAM49B:NM:016623:4/15
0 chr8 132462526 132462527 1000732 0 + 19655; RIP_Alu_chr8_132_01 NA NA SINE Alu Ya5a2 ctgaccctcactgggtggtctcactggatgataagggcctctgttttctcatctctacactgcagtagggttcagactataggtatttgttgagccatca
gtaaatggtaggcctttggaatactgagataaagtagatctgatccacaccttgttagatcaatgaggagacaaatatgcaagcagaacactttctacaa
gatgcattaagtactagagaatgagagtgaagcatttaaggaaaatcatttcattttgacaaagtaataaaacacatcctattcaagtgtaagaactgta
gaataagagttgagtaaaggatattttaaaggtgattctgaaaaataaaatgtccagagatgcttgaggtttcattgaggccaAAAAGAAAAGCATTTCT
TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG
GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA
AAAAAAAAAAAAAGAAAAGAAAAGCATTTCTaagagagttttctggaaatttcacttaagttgagagttaaagagatgagttactctttttttttttttt
tttttttttttgagacagagtcgctctgttgctcaggctagaatgcaatcacacgatttcggctcactgctgcaacctctgcctcctcggttcaagtgat
tctcctgcctcagactcctgagtagctgggattacaggcacccaccaccacacctggctaatttttgtatttttagtagtgacgggctttcactatgttg
gccaggctggtcttgaactcctgacttcaagtgatctgcccacctaggcctcccaaaatgctgacattacaggtgtgagccaccatgccccgccatgagt
tgcattttgacagg Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr8 134398643 134398948 1000733 0 - Yb8NBC525; 7874; pAlu8-134000238; RIP_Alu_chr8_134_01 TCTTCAGCACATGAGCATCTA AACATCTGGAGGGATAAGCA SINE Alu Yb8 gtgcttgtagtcccagctactcaggaggctgaggcaggaaaatcgcttgaacctggggggcagaggttgcagtgagccaagatcttgccattgcactcca
gcttggtgacagagcgagactccatctcaaaaaaaaaaaaattctatttatacttgaatactatcaatatattttaaatatatatttacacacacactcg
tagaataacatctggagggataagcataaaaatattaacagtgattatttctgagtggtagtttattttaatttttgtgatttccttttttgatgcatgt
acatatatatgtatatgtgtatgtattttgtgagtatctgaattttctaatagttgtacatgaagcatttctttctaaaagcttAAAAATAGTTATTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATAGTTATTATGacagtaacaatcatttctatagcttttcttagtttactatcagctcaagaaaaaaactaagtctaatagctgggtgtg
gtggtgggtgcctgcagtcagttccagttatccaggaggctgaggcaggaggatcacttgagcccaggagtttgaggctgtagtacgatatggtcgtgcc
agtgaacagcaactgcactccagcctgggcaacatagtgagatcccatcctgtctcttaaaaaaaaaaaacttggtctacttacactagatgctcatgtg
ctgaagataaagtctctgtctacctggccaaatataagtattgacctgctataaaactacggatggcccatttgttttaggcagatgtgcaattcagaat
ccaccc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 58 801 479 NA intergenic
0 chr8 140544452 140544772 1000734 0 + pAlu8-140159566; 994; RIP_Alu_chr8_140_01 CCACGCTCGAGCGTACCTTCACC CATCTCTCCACTTTTTTCTCTGTAACC SINE Alu Yg6 ttacccttcctacctgcttgttttagttccttaccaattcttttccaatcttttagatctaaagttccttgttctggaaaccatgggcaaaattgttcta
ttatttgaaatagcttgattagattttttgtagatactttaactccccctctttttaaaagaattttaataaagctgagataagaggcatatttactttt
aattttacttttagtttgccccattatcaccctagcttcttccgagcgcacaagcttaccgtaaggctgactgtagacgtcctcgggatctcttgtcgac
ttgtcctcaatgaccacgctcgagcgtaccttcaccctagagaaaagcctccacgttgggcaccagatgtaggggtgggttgcccctacAAGAAAACCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTA
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAAAACCATaaggagaatacgacttgagtcagctaggcaagatgggggaaaaaatgaatgagataaagtcaaaaaaa
cagaacatgcatattaaaaaatcatactagaatctaaaacaaatattttaaaagtgaatgtaaaaatggatagagtcaaataaataatatggataacaga
tttgcaaaaccactccaggttacagagaaaaaagtggagagatgaaaacacaaatatccaaattagtatcttaaaactataatgatagacttcaaggaaa
ttaaaaatataaaaacatcttaattagaaaatctgaatttaaatatttgtataataacaaattactaaagtaatactagaaaacacagataacctgaata
agacagtaaccagaaacaaac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 16453295 16453593 1000735 0 - 52451; RIP_Alu_chr9_016_01 NA NA SINE Alu Ya5 cagcctcaagtagctgggattacaggtgtgcaccaccaagcctggccaatttttgtattttaagtagagacaaggtttcgccatgttggcccaggtggtc
tcaaacacctaacctcaagtgatctgcctgccttggcctcccgaagtgctgggattacagacatgagccaccgggcctcccaaagtgctgggattacaga
cgtgaaccaccatgcctgaccctatttttgtctttttcagttgtgaattttgtagttggaggaggaattagaaaataatctcctatcattgttaatatgt
aaccgtcatttgcaacaaatggaaatttaattctgtttttgtcagtgcggtgagatagcatcaagtatacccttcatttggatagattagtcAAGAATTT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTTaatacttgtatgctcacagtggcaaattttcagcatagtcatttttgttaactttccaaaatgttgtcagaacgtgctgtcattcactctcat
tcaatctcctgaaagttaactcctgtctcattttctgtgagatgatccatgtttcctgttacacacacagtcagtacactcttagtgtactagtctccct
gcacacctttcagaacaacattgctttcagtagtaaaaatggaaagagagaggccagtggagtaatgtgaggaaagaaggaaatgggtgggctgcggggg
aaatgatcagttccccagaaatggtcggttctggagaaggaagaggatagttctaaaatttgggcataaaactaggacatcaaacaagcctggatgaag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:BNC2:NM:017637:5/7
0 chr9 18741840 18742116 1000736 0 + 238417; pAlu9-18741739; Ya5ACA1841; RIP_Alu_chr9_018_01 TGGTCAGTGTCTGGAGCAAG CAGTTATGCCCCATGGTTTT SINE Alu Ya5 caggttccctcaactgtaaaatgaaggtaatcaatagagcttatctcatattgttctggaggcaattaaatgagataatgtgttaaggtgccctctatga
tgggaggtctcatcgatttgctcatttaaccaataacattaactatctaaaaggtgttctgatggaccctgcaagtaatacaaaactgactcagatgcgg
gccctacatcaggaggtatacactctagcagtgcccttgacaggtagaataactgtaatacaactgagaaaatggtcagtgtctggagcaagtatggata
cagtgttttaaatatggattatatttggatatatagaaatgaaagacattttgaagggcaaggaaagggcaaaagatattccaaAGAAATACAACTTGCA
GCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAA
TTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGA
GATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATACAACTTGCAtaaagac
acaactagaaaaccatggggcataactggagaataacaaacagattattacagatatggctaagcttagtgtagatgaaaggaggtagtggaaacaggtt
ggaaagttagttacatgtcagagcagtaggaaaagattgagtgcatacacttaatattacagtctgatgaaaaacattaaggccaaaaaattttcaacca
actttcaggacaaaagctaggtgggactagctactagaggatctacttaccatgttttcttggccaattcctgtttgtaaaatctttgtgcctcagactg
taaacagaactttctaaaactgatctttagaagatgcttctgacgtacagcctgagccactgagctttgtccttatc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 456 166 NA intron:ADAMTSL1:NM:001040272:15/29
0 chr9 22989504 22989819 1000737 0 + 401; pAlu9-22989404; RIP_Alu_chr9_022_01 NA NA SINE Alu Ye5 aactgaaaggcagagaaatgtaaaggagattttcatatcccctaaggtttcaagtttctgtgcttaaggatatagcgagagagcactaccccacagaaat
caagaaacgataacaaaaacaatacatagtaccatctctgcagattactaggaagagacttcccaatttattcaatttgtacaattcctttacccacaga
ccttgttttcctaaaacagaagcacattacaaactaatcatttaaataagtcactctgatgtcttgctgacacaggagaggatttgtatacattttcaaa
ctgttcttttttgtttctgatagggataacataatgtgccagcactgtgtcctgacaaagaaatctaaatccattcacaggcatAAAAAATTTGAATGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAACAAAAA
AAAAAAAAAAAAAAAAAAAAAATTTGAATGCCagatccagaagaggcgcgacagtgtttggtaaatctgtgaatagacaaagatttagattatacaatcc
actattcagaactagctacataagttgtggggaacagcacaaaatgaaaatgtggacacctttgttcaaaaatggttaagaatttcaagatgtcaatagg
agagcattaaaccaagtgcagagtcctaagcatggagccataagcttgggaagctgcactgccactctccttcccatccattagtggaaaaaccaagtct
attttgtctaaacacacggggactgacacagaataggtgctcaacaaatatatgctaaataaataaatatgctgactataatttatactttacctatcac
atccaacttactaatg UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 28574936 28575011 1000738 0 - 15754; RIP_Alu_chr9_028_01 NA NA SINE Alu Y? taataatcttccctaataattggtatccatagctctcctctcagcagtcctgggacttgaattataccataccctcagtctaaggagccacagtccaaga
aacaacactaaaatgtttccaaattggtcatgctccttagggttgtcagatttatcaaatagaatacaagatgcccagttaaaacagaatgatttccaat
tacctgtgaatacatacactgagattttaaaaatgttgtctgggatatacaaataataaaaaacactattgtcatttacatgaaacgaattatgagtatc
taaattacgtgtctctttccttgattatacttctgtgatgactcgcctctttttaacagttccatgatttacaaaatttgttttAAAATCTCTTGCAGTC
GTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATCTCTTGCAGTCacagtcta
tattacatttacattgcaacacaactgtacagtagtcacatcagccttatttagttattttgtccattaagcattcattaatgaaaaaatatgttaaact
tagtgacaaaataatagcattctcatgaattttaattttctttctgatctctcttcaacagtataaatgatgactctgcatgttctcaagctagtgatta
tttaataacaaccatgtaaaaaattgaattattcaagtgataaaatctattataagaattagtcatcgcaggagccttaataattatccatttcaatttg
gaatttcttttcctgtttataagtaatagtgtatttatttcgacacagggataatttttttttggtcaattcctta UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:LINGO2:NM:152570:2/7
0 chr9 30481299 30481595 1000739 0 - pAlu9-30481193; 3576; RIP_Alu_chr9_030_01 GCCTACTATTAGATAGCAGCTCC GCTCTACACAGACACCATTGTAG SINE Alu Ya5 agacatatcataatgaaaaaattgagaaaagtgaaaaaattaattttctgcaatgaaactttgatgtagtaatagaacctttatttgcttacttttcttg
atatcccaaatgctctacacagacaccattgtagttaagaaaagactctgggtaaactaattttgttatatatgaaaatactgttagttttatttcaaaa
attatccaaaaacaaataaatatgaattatgacttgaggtacaagcaatcaagtattttctcctctgtacatgtgtaatattttatttataattttaaaa
tagcactttatttgtttcattgtggattgattagttaacatatctcctttgctaggttgtatataactccagcacatactcaatttAAAAAATTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATTATTTTTgtctttttatacaaagcattgattcattaaatgttaatttatgaaacatagcataattttggtaatctcactttgtcatttttaaaatg
tccaaatctaagaggacgctccaatattattttctttttacacatttaaatatttaaggtaattattattgcaatattttcaattatacattctcaatac
ttcatagtttttcatgcaaatcaagcaattaagatcaattataggagctgctatctaatagtaggctataaaaatgagatgcattaacaatttttttaaa
tgaaatgtactcatgatttaatgccatgaaaagtttaattacataactcttattaactttcacaaaacactgtgttcattttacacataaccaacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 32305162 32305380 1000740 0 + 2076; RIP_Alu_chr9_032_01 NA NA SINE Alu Ya5a2 aatggataaataaaatgtggtacatatacaaaatggagtactattcaccacaaaaaaagaatgagatcctgtcatttgcagcaacatagatggaactaga
ggtcattgtgttaagtgaaaaaagccaggcagacaaagacaaacttcacatgttctcacttatttgtgggagctaaaaattaaaacaattgaactcatgg
agatagatggtagaaggatggttaccagagactgggaagggtggtgggggtttagtgggggaagtggggatggttagttggtaaaataaataaatatata
atagtcacaaagaatgattaagacccagtatttgctagtacaacaggatgactaaagtcaagaataatttaatcatacattttaaaataactAAAAGAAT
CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG
CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAATataattagattgtttgtaacacaaaggataaatgcttgatgtgatggataccccatttactataatgtgatta
ttacacattgcatgcctgtatcaaaatatctcatgtaacccataaatacatacacctactatgtacccccaaaaaaactaaaatttaaaattgtttaaaa
agaaatgctagtgagccatgtagcaagaatgagaaggtgggtggaggagtaagagacagagagaaggagagaagaaaaaaaggaagggttgggggaagaa
gggaagaaggaaatattgctttgaatgtgtttaataaaaaggctgcatatcaaaaataatccttgaaaaaagcaacatgacataaaatatgaagtaatag
taatctggacctaaagtgc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr9 70967762 70968064 1000741 0 - 238617; RIP_Alu_chr9_069_01 NA NA SINE Alu Ya5 ggctgaggtggatggatggcttgagctcagggatttgagttcagtctgggcaacatggtgaaaccccatctcaattttttttttttttttggagacaggg
tctctcactcttttgcccaggctggagtgcactgatacaatctcaggtcactgcaaccattgcctcccaggctcaagtgatcctcccacctcagcctctc
aagtaactgggaacataggcgtgcaccaccatgcccagctaatttttgtcttttgggtagagatggggtttcgccatgttacccaggctggtcttgaatt
cctgaactgaggcaatccacctgccttggcctcccaaagtgcagggattacaggcctgagccaccgcactcagctaaaaatgtttTAAAATAAAGATACT
GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAG
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATA
AAATAAAATAAAGATACTttttaaaaaataattatttgcaaaatgctgtgtacgtttttcagaagaaaagggtctggtcttacaattctttttatgttat
ttacatatgtttgtacaaacacacatttggatttcagtttttaatataagtgataattgtttattcactcaaactatgcagtaagtagatcaccaaaaag
tggtaaagtacaactaaaatgtcaccatccagagccaactactgagcacctttccaggtatctctctgcacagacaagtaggtacatattgtacacaact
tagacacctggggtatacacttgggatacaccaaatttgctcttttgcaacctatttctacataagaatagagtttgactatttgtttcatgaactagat
ctc UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr9 73459215 73459486 1000742 0 + 15030; Yb8AC825; RIP_Alu_chr9_071_01 GCAGGAAAGTTCTTTGCTCTTT CTGGGTTAGCCCTTATTCTTTGT SINE Alu Yb8 atacatgtaactggaaaatgagattttttattatagtttttaagttaagaatagaataactaatttattttacttgaaaaaatctttttacagagtttct
tcttaaattttcatcttaaattacacctttctaatttaaatgaacagtttttatatactgattgtattaattgaaataagaacaaaatgaccaacaaagt
ttatttttttaactaacacacacacacacatacacacaattctctattatgaatattttaacaaatgtagtttcctaaaacaaacatacattgtctcaag
tttacaagtcaacattcttgcaatctctactaaacaaacttttacacatggcaggaaagttctttgctctttcaagtaaatagtcttagAAGAGATCATT
TTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAGATCATTtcatgataagtaaagac
aaaagaagcatagataaattttataatcatggcaactggaatgtaaatattctctaagcttctgcattatctttttcatctaaacaaagaataagggcta
acccagtgtttgggattctcaaaaacactatgctaataacctcattgaagttttttattacgtattactgaaccatgtggcttagagtttcaactataat
tttaactgaagctgattctaagtatttgaggtaaataatgttctatgatatagaacattaaagaatctataggcagaatctatggccacatagtagcaat
tcatgttaattcttcacagtattccattgtataaagatcctacattctaatctactctctggcaataagatt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 456 175 NA intergenic
0 chr9 77926556 77926858 1000743 0 - pAlu9-72306749; 15602; RIP_Alu_chr9_075_01 NA NA SINE Alu Ya5 gtagtgaaaaaaaggtcaataataaatctcaatagcgacaaagtttgtttaacacttaacagtactttactcaattgtcattctatcaaacagcaagtga
aaatatcattagaaaataacagtctatcaaaagtgtgttcagagataaattcacatctttaaaaagttttattaatataaaaggaaagataaatgaacca
tgattcagccaataagagtcataaaagaatgaagaggaaaacaggaaagaaattttaaaaagaaagaaagaaaaacagaaaaaaaattactgataaatct
caaaactggacctttgaaaaacagtaataaaaaatttaaccaagaaaataagaagaaaacactaataaattctaaatattaaggcagtcatAAAAACCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCTGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAACCAAtacaagagatgtttatagtattagaaaatactgggatttcttctaaaaatggctttgaggccagatggtttccttcaaacatgcgaga
actctgatcccaagggtctctggagagaaaatacaaattgcaaaattccataatttattttgtgaatttaacatcatctgataccaaaaacttgcagaga
caggccagtttcaaggtcaaaccaacgtgggttaaaagcttgactctccgtttactacccatgttaccttatagatgagaattacatgaaatataccaaa
agtatactttagaaaatgctatttatctgctgtaggtacacaactaatgttagctagctgctgtaataatagcatagaacacacatatatacacacacat
tag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PCSK5:NM:006200:9/21
0 chr9 78314340 78314648 1000744 0 - 1639; RIP_Alu_chr9_076_01 GTCTCAAACTCCTGAGCTCAAGCG CAATATGGTCTCTCAAGTATCAAGG SINE Alu Yb8 gggctggggagcataagactccctaaggcaaaccatatgtggaaaaagctccaaatacatatttggcaacaattttatggagctggaaggagtcattctc
aaaatatgaagatgtgacttcaggaaattctgaatgctcctttctgttcaatagttttcataaatgagatcacattatatgtagtcttatttctcaatat
ggtctctcaagtatcaaggatattttaaaaaaccaaacaccaaaactggtaatttgatacagaaattttcttttaatttgaatcatctttattgaattat
aatttttcatattagccatttccatttcttattgtacttctatgaattgttacatcctttgttcatttttctcttggagtcttcatgtttaaaAACTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACAACTATGttagtatgagggagttgtggggagtgactataaagggtacaaggtttcttcttggggtgatgaagaggttctaaaattgattat
gggccaggcgtggtggctcatgcttgtaatcccagcactttgggaggctgaggtgggagaatcgcttgagctcaggagtttgagaccagcctgggctaca
tagtgagaacctgtctccatatttaaaatacaaataaaaataaaatggattgtggtaatggttataataaaaaccacttagatatacactttaaatgggt
aaactgtataagtgaattatctcaatataactggttttaaatattagcataaatcatttccatattaaggtattaagcctccctcttccaaaatctgtag
gcaaatgtt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr9 84223680 84224007 1000745 0 + 21284; pAlu9-78588785; RIP_Alu_chr9_082_01 NA NA SINE Alu Yb8 aagttacacaataatatttcctgcagcttaaaccacagaagcactcacccttgagtgctgtaataggtttctagaatttatttaaactataaaaaaacac
aggacgaatggttgttttggctcacgtaatggatcagatatctaggaatgccaaaagcatatttatttactcacaggtagcaaaaacatcatataattct
ttttgtggctgtccaggcaatgtaaattttttttttctgttccagtaaagtgtacattgattagaaattattgttgtaaaaagaccaccactcaaacaga
gggtctgcactaggcaagatatatgaaacccaaagtgcctgttagggtgctgtgaaaatgtacgccttccttttatttatttttttAAAGATTTGTTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTGTTCCAtgcaggaatagaagccttttttgtgtgtggtcatattgctgagaatcatctggtaaat
gagccaagaagagagagcaagcaaataatcttaatcacttgggaatataagaatcaaacatcacattgtgtgcagtaatgaggagaatacattttagaca
ttggtgcaaaaatctaacttctatctttttgctatagcttactcaatttgagctatagtatggattgggattaaaagctctaagttaaatggtggtgtaa
ttatgtgttaacatttcttatatataagtttatttacatagcatatttggaatggctctatttttaatttagtattgaatcgctgcacatttgcaaactg
cttcagatgcactttctgaaaaggtgct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 95770180 95770418 1000746 0 - 52453; RIP_Alu_chr9_093_01 NA NA SINE Alu Yc1 cagtggtagccagcctggattcactgtgctggtgcagggctcccccgcctcattcgttcagtttatttagcagatgactcaccagcatgtgctgggggcc
tgggctggtctggggctgcaggaatgtgcatcagctggtcctcgcctcacgagaactccaggacgcaagtgctagtggtatcctcgtttctcagtgggag
aaactgaggcacacagaaggaatgtgcctctgtcactgagcgggacaaggtttgaaccggacactgtgccacctcgcttgcaccttcatcttcatgttct
tgctgtttcctcatgcataactggtgctccctttatctgattgttctctttaaatgacaatgttgttcttactgaataaatgtgtttAAAAGTGATCTGG
TCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGT
AGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGC
GACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGTGATCTGGatcttagttttaaaagctgtgtgcagtggctcacgcctgtaatcccag
cactttgagaggaccaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactagaaatacaaaaaa
ttagccaggcatggtggcaggtgcctgtaatcccagctactcgggggactgaggcaggagaatcacttgagcctgggaggcagaggttgcagtgaaccaa
gatcgctccactgcactccagcctgggcgacaagagcaaaactccgtctcagaaaaaacaaacaaacacaaacaaacaaacaaaataagtaaataaataa
aaataaaagctcagcatcacctagcaattgtggacgtag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chr9 97305836 97306165 1000747 0 + 12509; pAlu9-91565050; RIP_Alu_chr9_095_01 NA NA SINE Alu Yb8 agcagggaaatcttactcctgaatgcaaatgctcacactacttactgctgacgtgaacactcagctcactctgtcacaaacaagatctctacacaatcac
ttctgctttgaaaatgaaattaaatctatatggctactgttgtatagtcacctctctagttgggtctatctgcatttatgaaactgtcgcttcttctcta
gggggagaatctagcacagaatgaatgaatgaatgaatgaatgagagatcaaggacagggcaacagaacaagtgacttatgtcattagtaggcaaagtag
acctggagacaaacagacaacccatagtttcccatctgtaaaatgggacaatcctcatcataaagacattacatccactatcatgttataaaaacaaaaA
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAagataataatagctattttattgaatcgtaaggcatgcgataatatataacaaatgcctggtacatggc
agttgctcaacaagtgacagtattagtactgagtaaataacatttggcccaagaccagtgagtcatgctgaaactgccaaaagtaagcaaagtgagtgtg
cccctcagaagtgtcctcatccagtccattgaaaaagaaaaactttactccctctcactacacaactggcagctcccataaaactgctaggaagcacact
gcatctccttccaggacttgaaatgggtcgtgttatgcagaaagcaagttatttccagaaatatgcaatgttaagaaaataaatcacattctatctcctt
caacatgtcaaaggtccactgaaaactctt UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PTCH1:NM:001083605:2/24
0 chr9 99800897 99801209 1000748 0 - 807; RIP_Alu_chr9_097_01 NA NA SINE Alu Ya5 atcttggcgtttccatgcaaaactctaggcaactgtaatccagctagaacacaagatcatgaattacacgacccaaagcttaaaatagagctgtctttgt
tccatctacaattcaggtatgccacacaacataaatagccttttctgttaaagtgtaaaagtacataatggcttggccagtctgaagaaaaaaattgtta
agaacatgtttaaggctatatagtcaatacatgaatttcaaaagtggatccaaaacaaaatacccccaaaaattctcttctgaaggatgccaccacaata
tcaggcagggagagagcaaagccacagaaatacatctaattagagaggccctgatctttaaaattgggacttacataaaaagtAAAAAGCCACCACTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGCCACCACTTTCtcaaccaattattattgccagtaatttcccccactataaagaaatatgaaaatgaaaatgaccagtaagt
tccagtttccaaattctcagttacttaccaaaggttccaaggtgctgatatctttcagtttatttccacttaagtttagatgtgtgagatttggaagttt
ttcagctaacatgtccagacctccaaagattctattttcactgagttcaagctgcaagagaaaatggacacaacacaaacacaaatacacacagagaaac
agaaatcatttaaggtattgtaagtaacaaatacagttctcaaagatttatcaagatcaaatgatccctatttctattagggcatgcatgttcattttgt
ttaaatccaaata UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:ANP32B:NM:006401:3/7
0 chr9 100249168 100249465 1000749 0 - 55150; RIP_Alu_chr9_098_01 NA NA SINE Alu Ya4 ttggctggaattccaagtactctaagtaaggtcaaactaggtagccagagaaaaccaacaggttcctcgttccaggggaatttgcaatgttggctcaaac
ccacctttatttcatccccactgttgcctcgccctactgtgatcctggagtttgtgcacttggtttttttaagtcaaaatataattttacacacacacac
acacacacacacacacacacacacatacatactagttacatatcatcttgttagagttgtcccatctctcctgcctgtttgatcttttggggtcctggtt
ttactttccaatgtagagactaaacttcaggcctcccaccagccagacattggtgtcttatatttgatatcatcatttactcatAGAAGTCTTTTTTAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAG
AAGTCTTTTTTAGGttgaatctgggaaagaaaaagacaagaaacagggcaccgggaactccatccagaaataaggaaaactctacccagtcaagatttga
caccacttggggctggtcattcttccagttgtgactctatcccccagattatcctgattgtgcctgtttcttgactttgtgctcaaggctgtcactggag
aacttgttagaagctctgaaatagtccaaatgtggtataacaactgggagccctagaacatggggcttgttccagtgaccccatgctagcgtccaatgcc
accccacggtttcctattctgaggtccctttttcatgttcctttcttgtctgctgcccgggagcaacagaaaacccatccagaactttctctgtacct UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:GABBR2:NM:005458:7/19
0 chr9 117149478 117149808 1000750 0 - 238848; RIP_Alu_chr9_115_01 NA NA SINE Alu Yi6 aggatgtatggaaatgcctggatgtccaggcagaagtttgctgcagaagcagggagctcatggagaacctctgctagggcagtgcggaagggaagtgtgg
ggttggagcccccacacagagtccctactggggcaccacctagtggagccttgaggagaaggtcaccatcctccagaccccagaatggcagatccactga
cagcttgcaccgtttgcctggaaaagccacagacactcaacaccagcccatgaaagcagctgggagggaggctgtaccctgaaaagccacaggggcagag
ctgcccaagaccatgggagcctacctgttgcatcagtgtgacctggatgtgagacatggagctaaaagagatcatttgggagctttAAGATTTGATTGCC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTGATTGCCctgctggttttcaaacttgcatggggccagtagcctctttgttttggccaatttt
ccccatttggaatggctgtatttacccaatgcctgtacccccattgcatctaggaagtaactaacttgcttttgattttacgggctcataggccaaagag
acttgccttgtcgtagataagactttggactgtggacttttgagttaatgctgaaatgagttaagactttgagggactgttgggaaggcataattggttt
tgaaatctgaagacatgatatttgggaggtgtcaggggagaatgatatggtttggctgtatgtccccacccaaatctcatcttgtagctcacataattct
catgtgttgtgggagggacccagtgaaagat UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DEC1:NM:017418:4/8
0 chr9 121571667 121571973 1000751 0 + 20034; RIP_Alu_chr9_119_01 NA NA SINE Alu Ya5 actactcatttctctcataattcactgatggttgaagatctgggctccatacaatcattctagtacttaagccccttctatttaatgacactaccatatt
ccactgtcttaaagtccccttctgcatcatccgcaaccagacaatagacaagggaacaaatttaatgaagctttgcaaagaatgtttaagggtcctggta
tgtatagcaaatactacttgcacttacattcccttagctaaaattaaatctcatgaccccacttaaatgcagaggagactgggaaatgtagtctctggaa
taaaatggaatggagtgcagtgaaccatcatattttttctgtcacagtagatatttgctgtctgcaagagagtagtaaagggaagggatAAGAAAATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAGAAAATTGCaaggaaaaggacaaacttgagcaaaagcataattgtctcaaaatactagtcaaatttggggaagcacaaacaatttgatctg
acagatgctcaggttggcagtctcagtaataatttgaggctcacatcatccagggacttggaaaatgcactaaggagtttggagtttggactttattgta
cagctaaaggggagctgttgaacgatttttaaccagtagaaaatatgattatatttggaatttagaaaaatcattctctgagccatgtagatggtggttg
aagaaagcaagacaagaggcaaagagaacaggtagggtagaattgaatcatagatgtaagatgtcagactaaggatggttgcaatgtggtcagaaataag
aagatag UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chrX 22765486 22765758 1000752 0 - Ya5DP13; 13610; RIP_Alu_chrX_022_01 NA NA SINE Alu Ya5a2 taatgcagcacatgaatctactgagttgttttagaattgaattaacctataggtgaagtgcctgacacttggtggatgctcaaaaagtaacaatcctcct
attcctctcttggtttctatgctgaacatccttcttcatatctatgcttacttcctcatcatccttctggctgattcctttacttcctctttttgcctaa
atatgggtgtcaagtcggtactgttgttggccctctacttgagcgtgtccctctcacagttcatgtccgtttttatagcattctttctcactgtatacct
ctatagagccaagcctgatactctgccaaccccacatgtccaaatgcctagtggaagctccgtttggatgccccaccccactttAAAATCAGTATATCCC
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATCAGTATATCCCaagctaactat
tcaccgatctccttgtcacattccccataccatcccaattatttctttgactttaatttgtcccttgttgttactactaaaaaactttgaatatgatttg
atttatcccccaccttccaatccatatccagtggtcagcctcatgctttttgatattctcatgagatggagtatattataggaataagcatagatatctt
ttgtcttaaagctctgagtccaacacttagttacatagttatattggccttaggaaaaataaatgacctctgaacatcacttttctcatctaggaaaaca
gaataatcatacctctttcacaagtttcttgttggagatgtgaatgttctttctaaacaaacaaatggttata UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chrX 24202637 24202953 1000753 0 + pAluX-23494670; 13459; RIP_Alu_chrX_024_01 NA NA SINE Alu Yc1 tgtagtataaggatgcgattattactatattctgtccttacccttagagaagtaacacctcgtggcacttgactgtgggttctctggggtgagaaaccat
gtgctatttattttaatctggcacttgacacattaatgcttgttggatggacaaacaacagttaagagatgtcgaaagtagacaccatgtggctcttctg
ggcaggacctcatggaatgcccacttggagatggggacgctgatgggtccagattctgaccttgttttaaagtttcagaatatggtgatgcaactgtaga
aagctgatttctgctagctcatgagagattgttttgtattttatcacaacttcattgagatataattcatataatttactgacttAAGATGTAAAATTCA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA
AAAGAAAAAAAAAAAAAAAGATGTAAAATTCAataatttttagtatattcagacttgtacaaccaccaccacagtcaattttagaatacttttgtcctct
attaaaagaaaccggtaccttttggcagtcactccccagtctcacctcccccagcccctggcaaccactaacgtgcgacgttctgtctctctagatttgc
ccattctgggccaggcgtggtgactcacgcctgtaatcccagcactttggaaggtcgaggtgggtcgatcacctgaggtcaggagtttgagaccagcctg
gccaacatggagaaaacttgtttctactaaaaaatacaaaagttagccaagcatggtggtgcatgcctgtagtcccagctacttgggaagctgaggcagg
agaattgcttgaacctg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 33118515 33118824 1000754 0 - Yb8DP2; 238887; RIP_Alu_chrX_032_01 NA NA SINE Alu Yb8 ttagggcattaggaatgaaaaagacaaaatgcaaacaaaagatatttagatatttaattagtaaaacttatttgcgcgggtaatgaggagagagacaaaa
atagtagagagcaaatcatcaatactgacttcctgatttcttactagggcagtataggtgtacactatatatatatatataatattatatattatatata
tatatataatattatatattatatatatatataatattatatattatatatatatataatattatatatataatattatatattatataatatataatat
tatatattatatatatatatataatattatatattatatattagtactacttccttttataaattggacagaaagcttatatgtatAGAAAGAAAGATCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAAAGAAAGATCAatattttttcaaatgtccagccaattgtttaagtaagttaaggtatgtaatctaaacttataatttaagtttaaag
aaaaacattagaccaaatatttagccattttgatgtagccaagtttatgcttcaggagagttgcatagttatgaattgagctcacagaaatacaaataca
cacgtcatcatagtgtgatatccagcatagatggggggcagttatcataaatcctgtcctaggctgggtttggaatgtgagacagattttataataataa
tatttcatctacataaaacagtccatttcctggactataaggatcatgataccatttgtttatcatggctacaaacagaacaggaagtagtatccttcaa
cagagaagat UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intron:DMD:NM:004006:1/79
0 chrX 33212773 33212774 1000755 0 + 248;1104685752052; RIP_Alu_chrX_033_01 NA;TCTCCAGTTACAGGCCCTTTT NA;ACCCCTCACTGCATTTAAACC SINE Alu Yb8 tttctcaacaattagtgttttttaacaaaaggacataacagtgcatagccaaaaatttattaatttttggaacttttagtttccaaattcttcttcatta
aacacaagataaaaatacttaactttttaagacaggtgaatagaaggaaatttttgctgagcctcttctactttttatgttaaatattttattctatgct
ttttatcatggcttacacaaaccttcataatgttgctgcaatatatttactgactatcaatgctctcttcaaatttggtataggtatatttttcagcctt
tcccccttcttgtctccagttacaggcccttttatgggcctataacgttggttttctatctcaattcaaaattcaaaagaaaagactttaaAAAAATCAT
CGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACC
CCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAATCATtgccctaatgcttaatttagagcgtagcacatagatattcccaatatgttctcattaaaggtattgatctttgatttttaaaagtaagtaac
aacaaaactgtgagagaggagcagctttttcctttgagaactgtggtttaaatgcagtgaggggtattaatgactacataaatgacttcctatttcagtg
aagtgtttaataaggtctttaaaacagtacttcatagcatcctgctcttcaaagcaacatctgtggctctttttggttccaataagtgataaataacaac
aggattttggttcacgtaaggacctaaaacaggagagttggttaagctattcatacatgttgctttgtaattgggctgatgtaattttattttattgtg Other;Venter - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;60 NA;563 NA;254 NA;NA intron:DMD:NM:000109:1/79
0 chrX 71039957 71040262 1000756 0 - pAluX-69356353; 238289; RIP_Alu_chrX_070_01 NA NA SINE Alu Ya4 tggcacgtaggaggcactcaataaatgttagctcctattattagtagtatagatagtagtttcctatttttaaaaaaggaagggactttttttctccctt
ctccatcctgggtcaacatagcctcaagtccttacttcagagtttctgaagaatttattaaaatcaggaatagtctagatcttgtctcttgccaaattag
cttttaatttgtcataggctttctgacattcaggttgtctcaacttatttatcaaacctttctcagccaaattagtaagatttattaggttaaactgcat
tacaaacttgtggcaataacaagtgctggtccttatttgcttctttatgtctgggttgtcccacttcccaatcatcttagctatatcttAAATAAGTAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATAAGTAGGattctattggttactctctagcccagagtcatcaccttggacagtctaaatggatgttcactcaactccttagtaagcccagt
ttctggagttacccagggaacagtcactaaatatcttagatgagtttacatatttacattaaaaatgactatctcagggaggagccaagatagctgaata
ggaacagctctggtctacagctcccagcatgagcgacgcagaagatgggtgatttctgcatttccaactgaggtaccgggttcatctcactggggtgtgc
cagacagtgggtgcaggacagtgggtgcagcacacaatgcacaagccaaagcagtgcgaggcattgcctcacccgggaagtgcaaggggtcagggaattc
cctttc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 106548130 106548131 1000757 0 + 31023; RIP_Alu_chrX_106_01 NA NA SINE Alu Ya4 accaaaaacagctttcttgggcaacaccggccagagacactattccacctccctgctgaggtccagcttgaactttattcatttcaaaaccaaaccattc
agccagaccctcaaaccactgaagacgctcagtcagtcaaaatgggtcagaatcaagtgcaaacctctctgaagtgcttatcactctccagcatctccta
aatcttgaaatgatcctaggcctttcttaagcctcccttccacctgctggtcagatagaccctgtgttgtaggactcttccagccttggaaagtggtttc
cagaaaagtttgcttgaagtctctctaatacccaagaaagacatggaagccccttgaggtaagtgctgttcttcactgattgccctgcaAAAGCAGTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAGCAGTGTTa
cttcaccccttgctgcctttatccacaattcattagtttccactgatgaaaacaatcaggttggaatagatgaatacagccatgtgtatgcattagcttg
gtccacttcccagtatgtagactatcatatgataaagcttccatgaatacattgcattgcaaaaacaggaactgcatacaaattgaccttttatcatctt
aaaaggtcttccctgaggactttctaagcataaattcagtggaggaagtcacaaaggaaaaatatacatacatgtaacaaagttgaaatcaaaaatttat
gtgtattaaaaaaacagacattgctggcaggtaaataaattggtacaactttcatggagggaaatctggtatatgtattaaaagcctt Other - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
C:Reference NA NA NA NA NA intergenic
0 chrX 116338390 116338692 1000758 0 + 31314; RIP_Alu_chrX_116_01 GCACCACTTGTTGATTTTACCTATTC CATAGAGGGTGGAGTAAAGCAGCTG SINE Alu Y cacctggaatggatgacgagacccacttaaaattattctatacaggcaattctcttaacagtgccaaagcacagaattgtgatgccttagtaattgaaaa
attgcctggtgagagactttcaaaagtctacatctgctgaggttttcatctgtgagaaggaaaatatcttcattactaaataaacattgaagcaaaactg
agaggcaaaataatatatgggctttcaggttataagtcatcagttctgattgttcaatgcaccacttgttgattttacctattcataaaagaggtgcatt
aaaacattccctgagtactttacaacagtaattctcaaaacgtgatctctggaccaccagcagcagctaatcctgggaacttgtAGAAATGCAAATTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAAGAAATGCAAATTCTGaaaccccacctcagactttctgaatcagaagccctgcaggtggggcccagcaagttgtgctttactaaacactccaggtga
tttttttcagctgctttactccaccctctatgaacacagggactctccaaggtgttcaccatcataactgttgaaactagcccatttctttttaaaaaat
tttttaccattaatttttgtgggtacatagtaggtgcatatatgtacagagtacatgagatactttgatacaggcatgcagtatttaataatcacatcaa
ggtaaatggggtatccattatctcaagcatttatactttgtgttacaaacaatccagttatactgttatagtttaaaatgtacaattaaattattactga
cca UCSC - Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrX 4914724 4915022 1000759 0 - Ya5DP4; RIP_Alu_chrX_004_01 AACACCTCTGATGTAGCTTATG CTAGGCCACCATTAAGCCAA SINE Alu Yb8 cattgtacccaataggcaggttttcatccctcatccccatcccacccttcctgcttctgagtctccaatgtccattatacaattctgtaggcctctgtat
acccatagcttagttcccgcctccttttatgccttttgtataataacaatcaattgcagattctacatttgctgataattgaaataactctctttagctc
tatttacaacacctctgatgtagcttatgtttttatttggaattctacaatactgtcatcatttttaaaaactagattgaaaatggattattcactaaaa
catcatttttagtgagaaaaatgtattccataaccttaccattttctaaaaaatacacaaagtttgatgtcaatgaactcccttAAAAATGCCCCACCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGCCCCACCAAtagtacccattattaataacctgatgtgcaacttcgatgtgctttttaaaatgcgtataaccaatggacacacacacacacacac
aaacacacaaacacatgcattcctactattttattattggcttaatggtggcctagtaacaatcaactgtagagtttcttactatgaaatgttcctgcta
tacaccttttaatgcacacatgtaattatttttataaaatttatataaagtatatcagtggtgatctatttgacaattcttaatataatacatatcacca
aattattttctatgaaatttgcctcaatttacagtctttccagcaataaatgagaagggtgagaaggaagggagggaggaaaggaaggaaataaggaag UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chrX 11006331 11006652 1000760 0 + Ya5491; RIP_Alu_chrX_010_01 ACATGAATGTGCCATTGGTT CAAGAAGGCAGCTGTCCTAGA SINE Alu Yb8 ccctgggggctgacctaaatggactttgtgaatgagccttccaatggggagtctcaggatagtatcagagaaagtgaagagattcagtttgaagtaggaa
ttcccccagtgttgtagctgcaaagtgatcttggtcaggttctgttagctgaaggtcacagcctagtcaggtagccctcttcactcagctctctttgtgt
ctgggtcctggaagctgatctcttccctccacccttctggcatgggatgccaacagtgtccactcactagcttacaggtagcgtacctacacttgaggtt
ttcacacctttgtaactagaccctttactaaagtcttttcagattactcaacatgaatgtgccattggttatacaagcagtttAAAAACTTCTAACTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACTTCTAACTCATaccgttgtgagatggatttgtactctctaggacagctgccttcttgaggcaggtatgcaag
ctttcacggggtccctttgggccaccctgaccacaacacctgtaacgtgacatggccttttgtctcactcactgttcccagtcccctcttagcatctgtc
ccagcattgcacacaattgcctcctaatgctgaggtccccttgcctagggtgatggacattcggatatgtcatcttgatcccttttcaaggaaagccttg
ttgtgctgagagtgctgcaggcagacagctctcagctggcagcaacttggcagcagaaggctgccacggccaaggtcacatccttcccagggtggcctat
acccaatggccactggtcaaag UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chrX 5580351 5580680 1000761 0 + Ya5DP3; RIP_Alu_chrX_005_01 ATCTTGAGAATCTCTACCAC TCCTCTGGATTTCAGGGTTG SINE Alu Yb8 tcatgatataattctgttattgttgtttgcctcttattacccactagttttgtgatgtatttttacttaatctgcttatttataaacattttacctgtag
cactagaataaataggttctgccacattagtaaatttccagatataattttaaataggaattttagttttagaagaaaaacaaaaccaaaataatgctaa
cctgtctttttttcagaacggtgtatgtacacattttcaagaattagtaaaaagtcagtttgcctctcaaataccacaagtacacatctaaatttatctt
gagaatctctaccactatttttgtttaaatttaattaaatcataaagagcactgtttgcatgaatctttgtatgaaactgctctacAATACCACCGAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAAA
ATAAAATAAAAAATAAAAAATAAAATAAAAAATACCACCGAAGAgaaattttaaagtaagtacaaccctgaaatccagaggaaaaaatcatttggcttta
aagcaaaacacttttatttaagctgacaaaacacacacatacacacacacacacacaaaatgtcagtgataactgtgattgaagccactaatattttaga
aaaccaaattccttcatctttcaaaactattggtttcaaagagatccgcatacagagagttatacaactgcgggctttgagtttggctgtgagctcttga
aactgttcatagggtttctaaaactgtgacgatcttcctgtcttctctttttcttttatatcctgtttctaatttgtttgatggatctttttgaccaaac
cttcaaaatatatccagaggcagatactac UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chrX 129367492 129367809 1000762 0 - Ya5DP71; RIP_Alu_chrX_129_01 CACAACAAAGTACTGCAAAGAGT CTTTGTTTTCTGATTTTGGAAGG SINE Alu Yb8 actacaggcacccaccaccacacctggctactttttgtattttagtagagatggggtttcaccatatggcccaggctggtctcaaactcctgagctcagg
caatccacctgcctcggcctcccaatgtgctaggattacaggcgtgagccaccgtgcctggccccaagcattttggataagggatattcaacctgtaata
caatacacaacaaagtactgcaaagagttaatatccttcatacatgaagggctcatgtaaaatcaacaagaaaataaggaaaatacttgtagaagaaagt
tggcaaaggatatgaatagacaatttacaaagaaaaataatgggctgcaaatctataaacagatgttcaacctcactgatgatgaaatAAAGGCAAAGCA
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGGCAAAGCAaagtaataatgagaagccctttggcaaatattttttaaaatagtcactgttaatcaggattcagaaaaat
gggcattctaatgagtgtggaaattggtacaaccttttggagagcaatttggcaatgtttataaaacatctttaaaatgctaacatattgatccatattc
ctctttcactaaagagaccatgagggatgcatacaaaaatttatatactataatgtacattgcagtataattcataatagcaaaccattggaaataatgt
ccaacatttttttaaaaatgataaagagatatgccaaaacattaaggttttccttaagagtatgttctattttcttctttatactttattttgccaaatg
ttctataatgactatgta UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intron:RBMX2:NM:016024:3/6
0 chrX 114576762 114577043 1000763 0 + Ya5DP62; Yb8NBC102; Ya5NBC98; RIP_Alu_chrX_114_01 TATAGCTAGTAAATGGTAGAGCCAGGA CTGTCTAAGATAGTGATTGGACCTACTATG SINE Alu Yb8 tttctgtgatatctcaagcccaagtcctgctagttatcttctagatgaggcccaccgctagtcttgtctgtattgagtataaattagctgttaactatat
aaaatccaaattcagtaatgccagtggtatccagttactaacatctctcacctcccttttaaaagcattgttgttacacccaataatagtaataataata
agaggtatcatatactgagtgcctgccatgtgctgcaagctttatagatgctacataacttaatccctcaacaactctgtggggtaaatattattatata
cattttgcaaatgaggttgctgaggctcaggaagaatgaatgcaatgcctaaggtaatatagctagtaaatggtagagccaggatttAAAACTGTGCCTG
GTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCT
ACTAAAAAATACAAAAAATTATCCGGGCGTAGTGGCGAGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAACTGTGCCTGagcca
gaagcttactatatactgtgctgctggtctccctagataggttgcttcctcaaaaatgtggtggcttagacctaagccttgggaccatcttttgaaggtg
tgtctcttgaaaacttgagagttttggcctccatagtaggtccaatcactatcttagacagcagcaaggcttcattttccctgatcttttctgtggtctt
aatttaaatttccctctgttctaataagactttacttacccttcctatatctaggacaaatgttctatcttttgagaaattgatcttagctactatctga
ccaggatcagaaaagtctgtctcttctcatttgattacacagcaccctttgctctagtgcttacttcctagcaatcctgctg UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrX 138769645 138769951 1000764 0 + Ya5DP77; RIP_Alu_chrX_138_01 GAAGGATGATCTCTCCTTAC TGCAAGGAGAGTTGGCATAA SINE Alu Yb8 tatacatgtattgaaatatcactctataccccataaatacattatgtgtcaattaaaagttgttataaaaaaattaaatggaactttccatcaggattag
atttacccatgtgttatgtcaaattcaaacaaaaaagagctaagtattcctacaactagacaaatattgcaaccttaatgtgttaccagaaggcagacat
attcaaccctcacgtaaacagtaaaaaagagaaaacctttatgaaacggaatgaaggatgatctctccttacaaacacaattttgcataatgcatttgtg
tctagttacatggaaaatggaaccaattgtttaaagccagaagggtatataaatgccaattttcaacaatatatatggcacaaatGAAAAGAAAGTGCTT
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAGAAAAGAAAGTGCTTaacaaaagaaaatggaaaaggcttttttaaaacagaatagagttcattagacttttcatgactataattagaaaagat
atttctatgttgctataggtagagagatgcagcaagagtaaaactgcaccatttatgccaactctccttgcatagtgactgcaacttaccaatgaattat
ttccaatctaatttaccatttgaggacttgaaatagaaaatttaaaaaaacagatatacaggttttaagagataggagaaaagaatacccttgaagaaaa
gcacggatatctaattttacaaagcagaatattttcaaatgcctgtttctgggtctcatatatcctgtacctcatttgaggttcgaaatgtgttacttca
aaataat UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chrX 119527354 119527652 1000765 0 + Ya5NBC37; RIP_Alu_chrX_119_01 GCTTGAGGTTTTCATACTACTCTTATCTTT ACTGTATAAGCATTTTCCTCTTTATCTTTC SINE Alu Yb8 gcgagactctgtctcaaaaaaataaaataaaataaaaagtacattttaatgacgtgctttagaacaataaattagaaattaaattagcagaatgttctag
tgtatactagagcctgatatgcccaaaatactcattcctagatgacagaatctagtgatctgttttaggtaggaattatatatactggtttgaaataatc
ttttcttgttccttttaattgcaaaggaagtgactctccatttattagttcctacacgagagtagggtgaaaaggctaatagaggcctcatgcattcaaa
gaggcttgaggttttcatactactcttatctttggttaaaacatttgacctgtttatatctaatttcctcttaaacaatcacatgcAAAACCATATTAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACCATATTAAGtaggatacttgaaattcctgaacattatataaattatgttaaaaatttaatatgtttgaaagataaagaggaaaatgcttatacagt
tatctttctgcctcataatccttaactcaaagaggaattagaaataaacctttgaaagatgctaattccatagtctgaattgctgcttgtgttttaggac
agaagtctaattcattatgtaggcctgattctaagaaaatttgtctttgcttctcacttgtgttatcttttaaaaatccagcaaattccatactgccctt
ttaggtataatgttaaccattacaaataattttttttttaataagaagtctcacactgtcacccaagctggaatgcagtggcatgatctcagcttactg UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrX 105077829 105078115 1000766 0 + Ya5DP57; RIP_Alu_chrX_104_01 TTTTGTGAAATACGGTGCAA TTGTATGGTGTGTGTGAGGGA SINE Alu Yb8 agtgccacattactatctagccattatcaattggaatgtattcattcatagctccttttagatgggatatgtgctctacattctctacccatttatgttt
atatatttataataactgaccataaagtgtatttgattttgcagtacttgctttagtttttctgcacttcacaatgcattaacaaatttttaaaaaatac
aacaccagtattgcagcattattatgtgtattcctattctttattatattacctcaacagtgacataacagcaaattatcataaaatgttctcttatctg
gttaattatagttagaatttctgatcaaaagattcagcattttaaaagcagatactcctcaactcttaaatgcttatattttgtGAAATACGGTGCAACA
CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTCCTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT
TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAAGAAATACGGTGCA
ACAtctaaaatatagattgtcataaaaatattatacacatcatttacataaagagtttgaacataatgtaatatccctcacacacaccatacaaaatata
attctactgtgtctcaaatttgatgttggcaatgatgtttgtcctattgaaatttttatttaaaaggaaggcctaaaccaacagttctctgcttcactat
atttaaattcccaatttttagacaaccaaagttttagcagtttagcattatacaaaaagtccaggagaaaactttgatgtattttcaaattactacagtt
gtgtgatattttgaacagctctcagaattgtctcatatgtctctaacaaattacataaaccaattgtcaggacattagtggggacaa UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intron:NRK:NM:198465:26/29
0 chrX 127572772 127573077 1000767 0 - Yb8DP49; RIP_Alu_chrX_127_01 GACTAGGGGTTTGTGCCAGA TCCCCCATTTCTGTTGTTGT SINE Alu Yb8 tgcaagtgaatctgaaataggaccaagcttatgtgaaggcacaatgaaaagactactatgagagttagggtcaatctcaaaatctcactctcattttcct
tgccaataagtgtgtaattccccactattagtcactaagtagagccaaggcattgaaactaagttcacagaaattgctttttaaagaaagaggatttgca
atagggcttcaaagttaaacagaattgcctgttttaatgagaaatgaggtaacgaagtttttgaaaggcagagtaatttaatgaaaatggaagtctagga
catgttagatagtcgatgtaacacacgatgttcttgactaggggtttgtgccagagaagcatggtgaaatggtaaagaacttgattgaaagttagGAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAAAAgtagatgagagggaagagtcaaagctgtcttaaaagtgtccgatctgattaggcaaatgatattgacaacaacagaaatgggggaatag
agagaaaactaagtgaagaggatgaattgtcagtgaaatggaagaacaatgaagatgatacaatactctgttgggacatgaacatttttagaagagagtg
gacaaccatgctgagattattgtaaactgagacaagcttaaacaaaaggatgcagtatttagacggtgaagtcattaaaaacatataaacacatgtagac
atatatgtaccaggtattttcttctccattatgtccaatattatctctggatgaatggaggactcaagacatcatgatccacataggaactctttggtat
accttt UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chrX 143650986 143651278 1000768 0 + Yb8NBC578; RIP_Alu_chrX_143_01 TTTTTGCAGATGCTTCCCTA CCCTTGATCCAGATGTGATG SINE Alu Yb8 cttgcccaaggaagcacaaattataaatgacaaagacagaatatgaatccatgtctacctggctccaaagacattatatacctcatcacattcgtaagca
atgattttatcactggcttcaataatttgatattgattccctcccaatgcaggtcaccgagtcttcatacacagaaattattcttcactcatggccccag
ctgcgtctcagtgaatttttttcccaagaagacgaagcagagtaataggctacacataggctacacacttttctttctgcaaacaaaatggtaagggtga
aatctttctctttcaataagggctcaagtaatactctctcctttgaaagtgaaaatgtttttgcagatgcttccctactcttcttcAAAAAGAGATTTGT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA
GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGA
GATTTGTgccatctgctcatcacatctggatcaagggtagtatgtctaaagattttttttcatttcattaaaaacaggaaggaaattttttttagttccc
aattgtgaaattatataatttcaacctttacttaggagtgctcagttacaactatcagtggtatctaactttgtcgtattctcacaataaaataaggatc
ttcttgttccagatacaaagaggcaacatgtagagtaaactgtgctggctttaggtaagacaaaactgactggagtcatggcctgactgccttactatga
gaaagctgtagaatcatcacacgagaggttagaaagtaatttattttcacttctcttgtctgcaaatgagaaaattgaaaccaataatgggta UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chrX 93451643 93451950 1000769 0 - Yb8NBC634; RIP_Alu_chrX_093_01 AACAGAAAGGCATCATTTGC GGGGGCATTTATTACTGCTT SINE Alu Yb8 tacctaaaaaaggatctcatagcaccatgtacctcccctgcatagcacctatcacatatgcaattttatatgtttatatgaatccttgattaatgtccac
attttttgtagaatgcatattccataaaggcaaaagctctgttttacttaacattgtatttttttgcacctagcatttcctgatacctaatcagtatttg
aaaatatttgttgaacatataaatgaatgaagacatatagaagttttacctactcaagaccatggcagactatatgttccttaagagcaggaacgatgca
cttatctgtaaatccatggtggcttggatttttttttgagggggggggcatttattactgcttagtatataattgctgcctttAGAAAAACAATCCCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAGAAAAACAATCCCATGgcccatctaacaagaattgcaaatgatgcctttctgttaagtcttcaagtagaaaattttaaaaaagaataagga
agaaagaagagcaaattagcaacaaagaaagtaccagataattcacagactaccacagtaatgtggaaggcagaaatattacttacagacacagatttct
atatattttagtgaatagaatgtgctcaataaacatgtcaattctattatttcaacaaaacctattaagtatatcctcataagcatcacagaggttttct
taacgggtgattatttttggttcaaaagaagcagcctcaaaaatttctgtgctgtgaacattgtcaatacctcattcttagcacttaccatctctgtgca
caccagcc UCSC - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chrX 45472492 45472493 1000770 0 - Yd3JX437; RIP_Alu_chrX_045_01 TGGTGTACCTTAGTCCAAAGACC TTTGCATCTCAGAACTTTTTCCT SINE Alu Yb8 ggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccacggtgaaaccccgtc
tctactaaaaataaaaaaaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcggagaggctgaggcaggagaatggcgtgaacc
cgggaggcggagcttgcagtgagccgagactgcgccactgtactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaaAAGAAATA
AACCTTCAGTCTCCTGTTAGGATGAAGTAGGATCATTCTCGACTGCTTTGAGTGGAGGAAGCACTTTGGGACCCCAATTCTTCTTAAACAGATTTTCAGT
GAAATCTCCTGTTTTTAGCCTTACTTTAACCAGCATTTCTACAGCTGCCACCAATTCCTAAGCTGTTAGGAAAAAGTTCTGAGATGCAAACTGGGTTGTT
TCTGGTTTTCCTGCTGCTGGCTTAGAATTCAGCTGAGTTGAGCCTTTTAGGTCAGTTACCATCTATCCATCTGTTTTCTGGCTTCCATAAATTTATTACT
GTTGTCTTCTCTCTCctttgttcttgtgactctatgacagatgtaaatgtgtttgttcagttggtcattgttattcagaacagtgctctccttttaactt
aaattcatgataata Other - Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS,Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 2003 Oct 23;317(1-2):103-10. PMID:14604797.
- Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
E:Insertion-specific detection:PCR;C:Reference NA 60 547 240 NA intergenic
0 chr7 103974638 103974951 1000771 0 + Yb8NBC201; RIP_Alu_chr7_103_04 GGAGAAAATGTAAGGTTTCTAGCAC ACCAATGCAACTATCTACACTGACA SINE Alu Yb8 tccctcattgtaatgtgagtgacagtgtttaattcattgtagtacaaattgttactattgctaatgttcttaatatagcacattaaattaaagagtcact
gtagctgtacaaaatcatatagagagctcaccactttcaattaattcggggatcctcccaaggctgcataactgagctgggagagttcttcctttgtcac
tggagacctgggttgaaatcctggagacctgggttcaaatggcttgctgtgagaaagttacatgaccttgaacattactctgagccagttttctcttctg
taaaatgagaataatcatctaagcctgttaatgggatttaggagaaaatgtaaggtttctagcacaaatgttaacaagctcttAAGAAATAGTAGCTCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATAGTAGCTCAAaatatgtataatcaacaataattaatcatcctacttctaagtggaattaatgtattcatctgtcagtgt
agatagttgcattggttacttcaaaacactcgaggggtagagggtagttctttttcagtagagcagtatattccaggggttgaaatctgggcttgggacc
acgagaattatagagtatgagtaatcaatagtgatgtagtccagggtgatccttgaggttgcagtcaattaatataaaagcagttttaatataaaacttt
aatataaaagcagctttcgtgcatgtgtatcctatataagtcatggttgctgatgatggcagaggcagactgggttctccagctgtccagagagccatgt
ttctgtaccctatt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 476 145 NA intron:LHFPL3:NM:199000:1/3
0 chr2 39446081 39446388 1000772 0 - Yb8NBC189; RIP_Alu_chr2_039_01 GGAAGATTTGAGAGTGAAATACCC ACATCATGGCCTGAACTAGTTTTTC SINE Alu Yb8 gttctcaggtctcctgaggactctttcatgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttgactcctttca
cgaacaactgaagtactgttaatttcatttattgtttctaccatatgaaatggagtttagaaattatgtattttgaatgacaccacacatgaaattaaaa
gttaatttgaaattgactttaaaacacttttacatgtaacgtagatgtgtgttctcacttctctgtgtttaaaatagaatggaaatgggaagatttgaga
gtgaaatacccataacaatggcatgagaaaccttgttgatttttcgtagtctaagcttacatttttctcttggctataggacattttAAAAATTACTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAATTACTATGgcgtaacccaaaaataaaattctaagccccccaaccgactgatggaggctctcctcagccaagggcattccaaagttaa
cctgaaaaactagttcaggccatgatgttaccatcataatgagactccgacatcctcattataccctcctccctttggaattcaagctcagctgaccaac
attaacatttaaatagagatcttaagactagtgaacagactttttatagcaataagacacagaattccagcctgactctagtatagcatcacatgacaga
tagcaggccctgaaagaaatagaagtattttatcccaagtatatttctttgatatattttgaaatggtcctgcaaagccgtctcttgtgggggaaatctg
tattctat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 67 541 220 NA intron:MAP4K3:NM:003618:2/34
0 chr12 15514701 15514702 1000773 0 - Yb8NBC77; RIP_Alu_chr12_015_01 CGGAATGTTCTGAGGATCAAA GGAAGCTCTGCACAACTCCTA SINE Alu Yb8 gtctgccccagcctgtaggctgccaggttatagcccttgaattccttgcactgccatttccttgaccattactcatcttttgtccttcagtttctagatc
atactctattttcttggcccaaccagagtgtaggtgatagctaaagtctgtcaccaattaagcattaatttaaaataagtacaaatgatattttctcatc
aagttgccatgtgtgcatgtgtaaaatgacagttcaatatatataataatgcagcaattatttcctgacttctaaaatgaactcaggctggaagctctgc
acaactcctaattttggagattaaacaaaacacacttgaggaaagaattcaacctgccagttttaagtgaaaagaaattgttctgccAAAAAGAAGTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAGTGCCaagattttatgtgatatgtagggtaataataatagtcatataccaaattttatattttagaaagcactttc
aaatatattttctcctttgatcctcagaacattccgttaagttactgtctcaattcacagaagaagaaactgaggttcaaataattaaatggatttctca
aggctaccctattatattgtggaggagctagtactcaaggcaattcttataactacagattttgtgactctattgtactacagtccccagactgtaagat
cctggagccaagatgatttcccaaatgctacctttcatatctgtacttaattggtggcaagttccctcagcacaaactgtgactgacttcttctagaata
tgcctgataaatcctc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Reference NA 55 547 218 NA intron:PTPRO:NM:030667:1/27
0 chr12 96078873 96079186 1000774 0 - pAlu12-97487591; Ya5NBC147; RIP_Alu_chr12_096_01 TAGCTGGGGGAGGTAGATAATAAAC AAATATCACCTTATCAGTGGGACCT SINE Alu Ya5 ttacaatagcctcccatctcatctccttgccctataaagtctattttcctcacagaaaccagaaaaatccttcgaaaacataacttggatcatattactc
ctcaagaccctccaaagtcttccccatgtgtcctggagtaaccatctagccccactccttccatgatctcacaccctcctcactcccctcctcaccctgc
ttcagccctactgggttcttgttcttccttgagcaccagacaagctccccgcttctggcctttatacccactgtttctgtgaatggaatgctttctcaag
acatccatttgatttcctccctcattccctctagtctctgctcaaatatcaccttatcagtgggacctgccctcattatctcatttAAAACACCAAGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACACCAAGCTCcttgtccccatctctctctgcctccctacttgctttattttgcctcctaacatttgatgtataatatattta
ttaacatttatgtttattatctacctcccccagctagagtggaagctccctgagggcagaaaaattggttgaaacactgctttctccccagtacctagaa
taggcatgggcacatagtagacactcaagttgttgaagaagaagaaataaagccaagtcgaggtaccaggatacagtactggttgtgttgcattacatgt
atttgtttgcacagtcagagtttcaggctttgggagaaagagccctgtccctagtgtgtaataaagtgttcattcagcaggcttggagtgtttaaaccct
aaacattccagagg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr14 106025447 106025757 1000775 0 + Yb8NBC100; RIP_Alu_chr14_106_01 CGCAGGTGCAATAATATGGA AATTCCCTCCAGGTTGCTGT SINE Alu Yb8 gttacatgagtaatttctttggtgatgatttatgagattttggcgcacccatcaccccaacagtatacactgtacccaatttgtagtcttttatccctca
gcccccctcatctattccaagtccccaaagtctattgtatcattcttatgcctttgcatcctcatagcttatttcccacgtatgagtgagaacatataat
gtttagtttcccacttctgagctacttcacttagaataatggtctccaattccctccaggttgctgtgactgtcattattttgttcctttttatggctta
atattccatggtaaatatatacatatatacacatatacacgtatatatgtacatatataaaaaatatgtatatatagaaaatatAAAATTATATATATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCCCAAAAAAAAA
AAAAAAAAAAAAAAATTATATATATATataatggtgtgcgtgtgtgtgtgtgtatcacaatttctttatccacccattgactgatgggcatttgggcccg
ttccatattattgcacctgcgaattgtgctcctgtgaacattcatgtgcatgtgcaagtatcttttttgtatggtgacttcctctgggtagatcccagta
atgggactcctggatgaaatatttgttctcctttttttctttaaggaatctccacactgttttccatggtgtttgtactagattacattcccgccagtgt
tcccttttcactgcatcatcaccaacatctatttttttattttttgattatgactattcttgcaggagtaatgtggtattgacttgcatctccattgtgg
ttttgatttgc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 574 247 NA intergenic
0 chr14 80666807 80667112 1000776 0 + Yb8NBC148; RIP_Alu_chr14_080_02 CCAGGCCTCCATCTTTGATA TCACTTTTGGGCATGTCAAG SINE Alu Yb8 aaaactccgtttaccaggtcaacagtgacttccacaattgctaaatcaagtggccaattagtacttatttcagaggcatttgactcagttgctgactcca
tcctccttggaatgtattcttcttttggcttccaaatcactactctctcttggtttttctccatacctctgattgttccttcctactctgtttttctagc
tcttcttcttcttcttcctgatctcttaatgttggagtgccccaggcctccatctttgatattctttttatctatatcttcattcacttccttggtgatc
ttatccacttgtatggatttacctaatgcctatgatacccaaatagaaatctccagtccagacaattctcccaaattccacgcttatAAAACACTGCTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA
AAAAAAAAAACACTGCTTGactgccgtcaccatctggatgtctaataggcatctcaaacttgacatgcccaaaagtgaatttctgatcattccctccaaa
cctgcctcacctgcagccttccccatctcaggaaatggcaacttcattctcccagctgcagactagaaatcttggagtcattctcaacccttctctttct
cacataccccatatcccatccatcagaaagtcccaatggctctacttttcaaatatctacaaactccaaccattttcagtatctccactgctaccaccct
agtccaaagcaccatcctttctatttttgatctccctgtttccacgccttactcactttggtaactttcaaagcagcagccagcatgatcctttttaaat
aagtca UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 537 218 NA intron:TSHR:NM:000369:8/10
0 chr16 31968316 31968629 1000777 0 - Yb8NBC10; pAlu16-33001116; RIP_Alu_chr16_031_01 CACGACAACACGTTTACCTCA TTTCCTTTCAGGAACGTGGA SINE Alu Yb8 ggaatagtcacgtaggccttaatctggcttagtgaaataatagagcaaagggagcaatcagatatgcatttgacttacatgagcagagaaatgactctgt
ctgtctttggcccacaaggattttacttgtggtcaaattttgaaggaggtctgtagcttttaaaaaccgtagtagctatcattttagtgaaataatggag
gtggatttaccccaaacagttttcagcttgacttcccttgggcttagtgatttggtggtcccaaaggtttattttcctttcaggaacgtggaaatcttga
aagaaatgagttcttgtagagagaaatgaagccatagtgttagctaaactgaggccgaggctgccacatgaaatatagcctattACAAGACAAAGCTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAAAA
AATAAATAAATAAAACAAGACAAAGCTACAaacgtgttggattgcttaaattccagtgtggtaaacgtgttgtcgtgtaaaattctcaggaaccacatac
tgaagggcactgataaagtgaattaaatatggcctgagaaggactccgtaattctgtgtttgagtccttctggacaaactgtaacctacctgaataggtg
gacaagattgaaaagccaacttcagagcatgagcctgtaacaatagcggagtcttggccaattccagcagccatacctcaaccactcatacactcttgag
tgtgcacattttgtttaaataagacaaaaacaacctgtaaccaatccagctgtttctgtacctcacttctgatttctgtacatcatttttctaatctata
aaccttcttccacc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Reference NA 60 505 165 NA intergenic
0 chr16 26515539 26515866 1000778 0 - pAlu16-26535378; Yb8NBC13; RIP_Alu_chr16_026_02 TCTGGGTTTCTCTGGTGGAC CTGGCAAATGCTACCCAAGT SINE Alu Yb8 gaggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtgggtcacaggtcaggagttggagaccagcctgatcaacatg
gtgaaacccagtctctactaaaaatacaaaaattagccaggcgtggttgcacatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgctt
gaacctgggaggtggaggttgcagtgagccgagatagcaccattgcactccagcctgggtgacagagtgagatcccatctcaaaataaaaaaaaaaaaag
caagtggcgaaacctggcaaatgctacccaagtgatgaatgccaacctcactgaggaagcctggtggctctcatgcagccttggatAAGATGTGAAGAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGTGAAGAGGaagatgcttcagttttgtggtgttcttcccccaaacccaaactccagtctactcatga
gaagtccaccagagaaacccagagtggaggacattctacaaaatacctggccagtatccccactaggacttccagggtcatgaaaaccaaggaaagactg
agaaatggacacatcagaggagactggggagatgctacaactaaatgcaatgtgataccttggatcagatggtggaacagaaagaggacatacatggaaa
gacagatgaaattgtaattaagtccagaatttagttaataataatgtaagaatgttggtttttcagttgtgacaaatttactcaggttatgtgagatgtt
aacaagaggagaaaatggctgggcaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 510 168 NA intergenic
0 chr16 81561491 81561771 1000779 0 - Yb8NBC146; RIP_Alu_chr16_081_01 CTCTTCTCTCCAGGAAACGTC GGAGCTCTGCCTTACACTCAA SINE Alu Yb8 aattaggccagtatgccccagaatggtaaaaggaaaggatataggtggagcacctacagtgtctgctatggattttgcaacctagtctatgtgaaacctt
ttaaacatttatttgtacattcaacaaatattttaaatgtgcctgcactctgagtaagtactgaagcactgggcattggaaggtaaaaaagtgctcttgc
aataattttaataaaatttcaaaggtaaaacaagtcattatagtcattatagttaatactaatgaatgctctaatagggaaataatagaggggactttgg
taaatacagcactggaacttaatctattatgcagatcaaggagctctgccttacactcaaacaggtaaggtttaagctgagcccttAAGAATATGCACTG
GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAG
ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATATGCACTGttcac
aatagcaaagacttgaaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatataccagggaatactatgcagccataaaa
aaggatgagttcctgtcttttgcaggatcacggatgtagctggaaaccaacattctcagcaaactaacacaagaacagaaaaccaaataccacatgttct
cattcctgagtgggaggtgaacgataagaacacaaggaaacagggagggaaacaccacactgtcgatgggtaggggtctaggggagggatagcattagga
gaaatacctaatgtagatgacggattgacagatgcagcaaaccaccatagcacgtgtatacctacgtaagaaacctacaag UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 60 887 592 NA intron:CDH13:NM:001257:2/14
0 chr16 2042236 2042237 1000780 0 + Yb8NBC230; RIP_Alu_chr16_002_01 CAAAATGGCCGTGTTCTTTT GTGTCCACGGATCTTTGCAG SINE Alu Yb8 gtggatggatcacctgaggtgaggagttcgagacccgcctggccaatgtggcaaaaccctgtttctactaaagatacaaaaattagctgggcatggtgtc
gggcacctgtaatcccagctacttgggaggctgagggaggagaatcgcttaaactcaggaggcagaggttgtggtgagctgagattgtgccattgcactg
cagcctgggcaacagagcaagactgtctcagaaaacaaaaaaaagaacaagcgtcctgcatcctgttctgaaagttgtttgtgtgggtacggggcagcct
gtgagtggataaataggcctccgaggctgggatggtcccgggccctgtgtccacggatctttgcagctcaggttgcaacggtAAGAGTATTGTCAATGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAGTATTGTCAATGAGacaaaggaggtgagagtgccagtggttgggatgttggtcagatgacatctaaaagaacacggccat
tttgttattatttggttagagacaaggtctcactctgtcacccaggccggggtgcagtgtcacaatcatggctcactacagcctcaacctgccaggctca
cgtgatcctcctactttagcctctcaagtagctgggactacaggcatgcagcaccacgcctggctaagttttgtattttttgtcgtgacagggtctcact
gtgttgcccaggctagtctgaaactcctgggctgacgtgaccctctcccctctgccacccgaagtgctgagattacaggtgtgagccaccgcacttggcc
ggaacacggccatttt Other - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 62 458 124 NA intron:TSC2:NM:001077183:3/40
0 chr17 14903686 14903992 1000781 0 + Yb8NBC24; RIP_Alu_chr17_014_03 AACACTCCACCCAATAACTG CATCTCTTCTTTACCTGTTTCC SINE Alu Yb8 ttagcatacattcaatgacagctttaaaatgcatttgaaaactttaataactgaaaagaaaataaattcataatttctgttggagatttaacattcttca
tttaatagccaggtaagaacaaatagatcaaaaatcagtaaggatataggatacttgaataaaaagattaaccggtgaatcagatagaattggcatttgt
agaacactccacccaataactgcagaatacatatttgtttcaagtacacatgaaatattcactaagataagccattttttggccataaaatgaatctcaa
cagaattaaaagtatttaaataatatagtatattctctgatcacgacaaaattaacttagatattaataactgaaaacgtatctAGAAAATCCACAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGA
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AATAAAAAGAAAATCCACAAATAttcagaaattatacaacacacatataaataatccacctattttaaaagatattaaaaataaaattagaaaaattatt
gaactgaatgaaaataaaaacatagcatatcaaaatttgtaggaaacaggtaaagaagagatgagagggaaacttatgtctttaattgtgtatgttagta
aaatagaaacctctaaaatcaatatcctaaacctctcctttaaaagccacaaaagataaatttaaatttagtaggaagaagaaaataataaagatgaggg
tagatatcagtataatacaaaattttatgaagaggaaatcaaaattggttttttgaagaaatcaatggaattgataaatttctatcaggattaataaaga
aacaaag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 56 661 338 NA intergenic
0 chr17 64060402 64060716 1000782 0 - Yb8NBC227; RIP_Alu_chr17_064_02 AAGAAAAGGGAAGCCTGGAG CAGTCATCACCAGCCATGAG SINE Alu Yb8 actgctcttaagaaatgcctgagactggataatttataaaggaaagaggtttaattgactcacagttctgcaggcttaacaggaagcatggctaggaggc
ctccggaaacttacaatcatggcagaagggggaggggaagcaaggcacatctcacatggtggcaggagagagaggatgcaaagggggaagagccccttat
aaaaccatgagatctcgtgagaactcactatcacaagaacggcacaggggaagctgccccatgatccaaccacctctcacagcatccctccctcagcaat
ttgagatgagatttgagacaaggggattacaatttgagatgagatttgggtggggacacaaagcctaaccatatcactaaggtttGAAAATAAAGGTTTA
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGGAAAATAAAGGTTTAcagggctccaggcttcccttttcttcagttaagcacctgccttgaccattttatagaacacaaggtgagt
gaggtattgtcctgaccctccagaaccagggagagggtaagagaagtgaggtgcccaggatgcaaaatttaaggaagtagcactccctgcacctaagaag
cactcacttgccaagccctggtcccagcccaggtgtacagtcttaagtagaaagaggcataaacaaactagtctaatataacagaaggcataattagaat
ctacaaagatgtagttgaaacacaaagaggaaagggttcattcttcttaggaaaacattcttcagggttttcagtaaatgtcttcattgtattttttgct
cttttcccataccag UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 881 546 NA intron:FAM20A:NM:017565:3/11
0 chr17 58095056 58095351 1000783 0 - Ya5NBC157; RIP_Alu_chr17_058_02 CATACGTTAAATCACTCGGTACTCA TCAGAAAAGTATACAGGTGATGTGC SINE Alu Ya5 agcgctgggcagggaggctggtattgcaagccggggtgactctgacctgcccgccctgggcctccaggcagccctgcagtccatggctgaagatgaggaa
gacgttgggttctggaagggaaggcaagacacgaaggcatcacaggggctctcctggttggcccttgatgaccggtgtggctgacaggcacctaccatgt
gcccagtgcaggatggtgagccgtcactcatacgttaaatcactcggtactcactaccaaccctctgaggtggaaatgagtggcagtgctaagcccttgt
gcccagatgaggcagaggcctgcaggactacctctgttctagcccctgctcaccaggagggaggactcagtcctctgtaccaccctcAAAAGCAAACCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GCAAACCCAactccacccggcacatcacctgtatacttttctgaagattttatgaggaggagtggaggcatttacaccacacaccacgttgcaacctcaa
tctcaatctctattacatggcgtggtttttctgccaaaattctcctttgatccggaggcattgtgtctcacccttccccctgccccttgcactggttcca
tcctttccttcttctaggatcttcccagaccactcatcccacccctgaactatttcacgccttaatttttacgcagcaatttaattctttggcttcctca
acctttcctctttccacctatctcctcgctgagcaggcaccctctgtagaagtcactgggggaaatccaacctgccccccaccacagcacacccac UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 516 207 NA intron:MRC2:NM:006039:1/30
0 chr18 24081891 24082207 1000784 0 - Yb7AD39; Yb8NBC80; pAlu18-25715783; RIP_Alu_chr18_024_02 ATTTCACAGTGCCCTGTCCT TCCAGGCAGATGAATTGACA SINE Alu Yb8 ttttcaaagaaaaaaattattttgagacaggatctcactctgtcacccaggctggagtacagtggcaatcatagctcactgaatcttcgaccttcctgac
ttaagcaatcctcctacctcagaccccaaggagctaggactgcaggtttgtgtcaccacatctgagtaatttttattgtttatatttttagaggcgaggg
tctcactatgttgcccagactggcctccaactcctggtttcaagcaatcctgcctccttggcctcccaaagtgccgagatttacaggcatgagccacaga
gccaagcctttcaaaattttttatctgatttcacagtgccctgtcctgataatctagtaatcctcagcatgaactcttggctgtAGAAAAACTTCATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGCAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAAACTTCATCTTtttttttttttttctctgctaccacacacctgtcaattcatctgcctggaatgatctctctggaatt
tttctctaccttacatcatttttctattttaaagctcatcattctcactctgtttatttcaacctacacaggttcttttcttacatgtactcctataata
gtccacaacttctcgtgtatgtacattctctactgtattgttttccaacttttattgttacctatattattaaatcttcagtcagacgagatgttgcttt
aagtgaaaagaactcttacatttttttgtaaacgttccacaacaccccattaatgctaaacatatagatatctcattttgaatattgcattaatgaggaa
gtcatgcctagtttatt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 NA NA NA intergenic
0 chr21 9991028 9991309 1000785 0 + Yb8NBC18; RIP_Alu_chr21_009_01 TGTGGTGTGGGCTAGAGGATG TGGGACTCAGATTTCTGATAGGA SINE Alu Yb8 tcctacgaactgacctccttatacaactccatcaaaaaaaggtgcaaagttatctacaaatgctacaatgagaagaattggaaaccctgttaaaaaacac
tctgtatggccatgcaggctcctgagagtaaattccacaaatgtccatctgtctccgtgttttgtgtttccattttgtgcatgggtttgtttgtgtaaat
gtgttgacaaaagtgtgtatggatgaagatggatggatatatttgtgtatgtgcttggtgtgtgtatagctctatgcactcttatgcatacgtgtgtctt
catgtatttataactcacctttcactgataggtgacacccgggctgctcctttaaattcacttgtgtgtgggctagaggatgatAAAAGAATACAGTCAG
CAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
AAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAG
CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATACAGTCAGat
aggagacgcgattctaaatttacttttttggaaaattagcttttattactctagacagaaaccaatgaattcctatcagaaatctgagtcccataaaaaa
actgcttagtaggaactaagggtggcaaatacattacaggaagaagcaagtctcctacgacctgctcctttttatagagctccaccaaagaaggatgcaa
agttactaacaaatgctacaatgagacgaattggaaactctgttaaaaaaaaaaaatctctatggccatgcaggctcctgagagtaaattccacaaatgt
ccaccagtctcctttctctttggtctatgtttccatcatgtgcatggattagtttgtgtaagtgtgttgaagagacgtgtgg UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 56 431 133 NA intron:TPTE:NM:199260:6/22
0 chr21 32389722 32389947 1000786 0 + Yb8NBC26; RIP_Alu_chr21_032_01 GGGTCCCTCTCTGAAGGTAAA TTTTTCCTGCCAACCAACAC SINE Alu Yb8 agaacagtgaaatgaaaggaagttggatccctgtatgacctgccagatcagagcagctgccctccatcctctctcccgaaactgccctgttcagctcaaa
ctttaaaggagagaaaaatgaacattccatcttgtttaagtcactcttattttcatctctgctaaagcaactgaaccaacatatacaaactggatcaata
agtaatttgcgctgtgattttgcttactatcatgcacatatattggtgtccaaaaaacatgagtgtgaaatcttgtcaaaagtttgctcacatgttacct
gttttttcctgccaaccaacaccacacaccactttctcataaaggtcttcttagatccaggaagctaacccagaaccctttaaaaatgatCATATTCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTATCTACTAAAAATGCAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAC
AAACAAACAAAAAAAAAACAAACAAAAAAAAAAACACATCATATTCTCAaacagctaatagaaaggtcaattcagagtgatttaccttcagagagggacc
ctcagagagaaccttgttttggggagttgtaagaagccctgtaggctctatgaccttatatctcagatttttaggacaattctaatttaaactattctgg
ctcagttcccacaaatgtatttgtaagtgtacttgccatggtttttgttgagaaatgtggtcgcagtccctacgggcccctcagctgattgtcatccctt
cgtgtcatcttgccctctggtcttcc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 56 499 150 NA intron:NCRNA00159:NR:024352:2/3
0 chr21 38014872 38015179 1000787 0 - Yb8NBC36; RIP_Alu_chr21_038_01 CTAAGGAGAACGGGACAGAT TATATTCTGGATCCCAGTCC SINE Alu Yb8 ggattacatggtaattctatgtttaactttttgagggactaagatactgtttttcatagcagctgcactgttttacactcccaccagtgatataccagca
ttccaatttctctacatcctgccaacacttgctattttctttttttaaaataataaccatctaatagatgtgaagtggtatctcattatggctttgattt
gcatttttctaatgactagcaatgaagaatttcttttcatttgtttattggccatttggatatcttctttggagagatgtctattcaagtcctttgccca
tttctgaatgggttgtttattttttgttaaggtgtaagagttctttatatattctggatcccagtcccttatcagatgtatgactAGAAAATGTTTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAGAAAAGAAAATGTTTTCTCccattctgtgggttgggggtgatttttgatgaggaagaaaccacacttctgtgtcactaagggcactgcccaaacaa
ctgacacttggttaaacccaagagaaagatgacatctgtcccgttctccttagctcactgtgacagcgcccccagcccccaggcctcctggacaccctcc
tccttcaaggtcccctggacagttacagggatagctgactcgacttgtcctataggtttcactcctcaagttgcctcaaacttgcatacattctcatttt
tccttctaattcatacccccaataaggaccctgtagggtttagttacgattttcttggattcaggtcaagcaaatgtctcagtttctaaattgtcagctg
tatgggat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 506 183 NA intron:KCNJ6:NM:002240:2/4
0 chr22 16427376 16427718 1000788 0 - Yb8NBC120; RIP_Alu_chr22_016_04 CAGTGGATCTCCATTTTACCTCTC GGAAAGGTTTCAGGAAGAAAGTG SINE Alu Yb8 aaagttgtaagttactagccaatcaaaacaaatacaaaatataaagtcccattccagccaaaaaaaccagacagcaataaagtagacccatcaggttata
aacgaccctgtctcctttgttcagtatactctcgtgacaaaactgctagcaagtgtaccctttctgcagaaagtataaaaatggccttactaaaaaaatt
aaatttatattcaagtgctatttctttacggcaccaaggaacaagcattcctacaagtgagttgtgaactcaatgctgcttgagttaaggaaggtttctt
ggagttttggagacatggaaaggtttcaggaagaaagtggcaattgattttgggttggaggaaaggcaaagatgttgatggaattATAAAAGCAAGGATA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
ATAAAATAAAATAAAATAAATAAATAAATAAATAAATAAATAAATAAAAGCAAGGATAgagaggtaaaatggagatccactggcaaattgtctaatttgg
ggcaaaaggctgttaaaccacgttgggtctagatgaaacagggccctgctgccaggcgaaggatctgggagaggtgaagaatcagcactggatactttga
agtcagatgcacgttcagattccagctcctaaattatgaagtaatacactttaggcaagctactttagtgcttttttcataaaaggggaatgggacatcc
atgtaacaggattgtaattaatctgaaatgaggctgtagagtggacttgaaaataggattgcttttgaaacagtttgaatcttagtttaccgcttactag
ctgtgtgaccttaaacaagttacttgtctgtgttgcctgttca UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 532 212 NA intron:SLC25A18:NM:031481:1/11
0 chr2 114079138 114079440 1000789 0 - Yb8NBC126; RIP_Alu_chr2_114_01 AAAATGTCCCCTTTGTCCTTC CCTACGCAGAAACACCCTAGA SINE Alu Yb8 aggcacatagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa
gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat
agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc
tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctcttAAGATGCCCCAATC
GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAGAAGCCCCAATCatcattcattctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacattcttaagagaaa
cctggcaccataagtacagattaaggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatggtgg
gaaggaggctggtgccagagtggattcggattgatcaccacacatgtacctcaatcaagtgaggaggtcccacaaggctaagtggggcaagtcggggacc
taaggcagtagcaggaaaaccaaagaaaacaggcggagacttgagacagaggtaggaatgtgaagaagtccaaaataaaaatccctgcacaggactctta
ggc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 438 118 NA intergenic
0 chr3 187512318 187512639 1000790 0 + Yb8NBC181; RIP_Alu_chr3_187_01 CATGTACCTTAGAATTCCACTCTCA CCCCAAAGTTTATAGTCTGTTGTCT SINE Alu Yb8 ggtaggagcatgttttgcattcacccagactgtcaggactatccacatacagttctgtcctaaatcgggtgttcagaaagtttttctctttgatcaaggt
taccagtgccctaagaagttttcagtccaaaattgtcttctatactttatgtgccaagaactctgggacctaaaccaagcactgttcctagtgtttgagc
aaattcaaagccttttaaagggaaaaatttggccctacacacagacacctttgttgccttgtcagtgtgggacaggggtgcgttccatctgaacaagcag
acaaatcagagacttcagtgtttacagcagaatattagttgtgctgccaggactagaccccaaagtttatagtctgttgtctagttAAGAACACAGAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAACACAGAGTAtttgagcattagaccattaaactgttaaactccgaaaaaactataaatcaacattttcaaaagt
gaatctgaaaatccatatatgagagtggaattctaaggtacatgataactcttcattcctcaaagttctctatgagcttctcaaactgtaatgtgcgtat
gagtcacattgggatctggtaaaaatgcagattctgtaggactgggccacagcctgagattctacattctgaataagatcctaagtgacaccaattttgc
aggttcacggacctcacttgatacgcaggctctaagcaatgtccctgtggatctggggctgactgctgaggcttgcctgtcacaacccagaaaagaccac
gatgccgaggacaaaggaacat UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:DGKG:NM:001080744:2/24
0 chr5 144577238 144577535 1000791 0 + Ya5NBC16; RIP_Alu_chr5_144_01 CTTAACCAAAATAGTGGACGAGGTT CAGAAGTATTTACTACTCGAACAGTGAGC SINE Alu Ya5 gtgaaaataagtatattatgcatggttgactatcactttcataaaataaaaatttatttaaaaaagaattcactcctataaatctcttacttacaatcag
aaaacaaaatccttttaattatatgtctatgtcatcaattcagggatatgcatgttccttacatttcacttagtttaatgcactagtattaattacaatt
taagattaactcattctccacaaaatcaaaggtctgaaagagaataattttatttatttgcttcatattatcagaagtatttactactcgaacagtgagc
aaaatggtttactataaggttgaggctattattcatttagaattgaggtgaagatacaatactttgtaggcaaaaaaagcaatttagtAAGACTGTTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGACGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GACTGTTCCAtctcatttagatttcaataatgtatttttattaaataatgggggaaaaaaacactgtgaatgaaaaggcatcaataacctcgtccactat
tttggttaagggaattcaaaatgtaatttttccccaagattgctgttaacatctgccatttatagtcttttagcatggtgctctatgatttttaatgatt
tgacttcaaaaaaacaacagttactcttttctaatcagaaaagcaatacatatttttgttacacaatttggaaaatgcaaaaactattaagaagaaaatg
aaaatcgcctgttatcctatcaccctgaggagtttttgtagcatttcatgcatatgtatgtgtactttgccacacaaggatcatgctgcatagcagcc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 65 539 229 NA intergenic
0 chr6 9568379 9568700 1000792 0 + Yb8NBC49; pAlu6-9522838; RIP_Alu_chr6_009_02 GCAGTGGATTGGTTTTTCTG GCTGAAAGAGGCATTGAAATC SINE Alu Yb8 aaaaattctatattccccctccctttgtatccacttactcttgtttcagctcaaatcaaaaaaataaaaaaagaagaattatggcctgaaggagaatgga
gagagttggtttcatgaccagaatcaaggaggaaagcttgcctgatcatcctcagaacaccatgagatccttgaaacagtagagtctcttttgattataa
aatatttattctgcacagatcaaaatggtgaagggagctgatatatctcaataagcaacatttttaaaaattatgataatttttgtattaactaattttt
tatgacaaacgttatgaattcatcagatgttaaagctgaaagaggcattgaaatcagatgaatccttcagagagaaaagagccttAAAAATTAATAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCATCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTAATAAACAtatataaagtcacacagagatccagtattagtctcagacaagtgattttaatctttatgtttt
ccttaccattattactatttcattcattatcatgacactttaaagtttttgaaacacagaaaaaccaatccactgcttacagtttcccatcaataaatca
ttaaattataaagttcatatacaatatagtagaatttatgtcagtttttaaaatattaaaccaaccatagttccaatcaatgtaattaaactaataatta
ttgagacagtacagaagtacaattaaagtgaattctcatgtctggttgtctcacttatattctggcttgaccacttactaacttatgtgacagtttttga
cctgtaaaatagaaatactagt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 542 205 NA intergenic
0 chr6 25637864 25637990 1000793 0 + Yb8NBC67; 7451; RIP_Alu_chr6_025_01 TCTCTACCCAGCTTTACCAA GAGGACCAGCTTAGTTTGTG SINE Alu Yb8 cccagattttatgttcacaatgtcaggttcattaaaaaaagaaaaaaaattccgagattcttttgaagaaaagtttgatgaatattaattaacacatgct
gaagagaaactgaggtgtttttctcttatactgcattcctcttctctctacccagctttaccaaagaaacagaattataataatttaaaaaaatgtgaaa
tatttcttttccaaaaattaaccaaaaccaaaaatcacaagatatttgaggaaaacaatctatgtgtcaaagagcgagatgaacaaaggaattgagctca
gataatgcagagtacagcagagagctttaaaaaaaattgttattgtaagttcattgggactgcagagaatgatacatccataaaatAAGAATAGGCTGCT
AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGGCTGCTatgaacaggagtagtcagagaataagaaacaatgcttaacaattaaaattgtgatactg
tagtacagaattaaataaactgatggacacaaactaagctggtcctctggaagaaaaagtagagcaaacctttatagcttataataaaaaaagacattaa
aaatatgaaagcaaagtaggtgaaatggtgaattgacttagaataatcaacagccttctaatggagcttcaaaattattataaaaatgagagatattaga
ggacaggaaagaatagaaaaccatttcatatgagtctcggggttgatataacccactagaattgatcagaatgagtgggcaaaaggacccacacctaaat
atatcttggtggaatctcagaacacct UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Reference NA 55 503 375 NA intron:LRRC16A:NM:017640:24/36
0 chr6 33201403 33201716 1000794 0 + Yb8NBC65; RIP_Alu_chr6_033_01 ATCTCATCTCCCTGCCTCTG GGGAGGTCTGGAGATCTGTG SINE Alu Yb8 cgtaattggttgagagaggtgtccaaataaaagtaatacaatttgcaaaatctgtcactaagacttcatagaggcccaaatcagcgacatggcagcattt
tctttcatggtaatcagctgccagattgcagagaccccctgatgccagactaaggagtgtggatttctcctctaggccagcaggtccccaacctcactgc
tcagaagactctccttgagatcctctgtgaagcaaagattcccccagactcactgcctagagattcagattccctaggtggggaggtctggagatctgtg
tttttaatcagctcccaagtgattcccatgtaaccagataagtgtcagaacactgaagatttttgaaaatcttcagaaatcttAAAATGACAAGGCTGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAGCCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATGACAAGGCTGGAaatctgttttcagaagactgtgaagtcagttggagagagcaggaaccagaggcagggagatgagataag
aaactgctattattgtccagggaaatcataataagggcatgaattagaataaagaaaaacacaggggtaggggagacggaggaaagaggaggatagaagt
tctggccattccagtgtggatgcccacccaaatctagaattaactgagcaaaggcaactagaacaaacaggaatccttgccttggtgaaatatatttgaa
ctgggtcagaaatgaggccactgggtatcaagccttagctgcagcgccccctggaggtctctgatgtgctccaggctgaccagctcccgtcaaagaagat
ggagcaaagtgctt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 517 186 NA intron:HLA-DPB2:NR:001435:2/5
0 chr7 31726060 31726336 1000795 0 + Yb8NBC192; RIP_Alu_chr7_031_01 CTGCTGTACCCTAGGCTCTTCTATC GCTCCTCTGCTTTTATGTGTTCTAC SINE Alu Yb8 caatgctattataatttattggtgcaatgttctcacaagttccaggacacaaagatctttccttgacataatccctccatgctctccccagccacacgat
tctctccccatcccctcacaatgcatggccgtgtggctctacattttgtccgacagacagtagctggaataaaaataaattccacacattaatttaaata
agcccattgggcagataaagtgtttgggcataccagtcaatattcgttgcctaaagcttctactccgaaagaaaccagcaccatggccaatgctgctcta
ccctaggctcttctatcccagaggaaagcatcttgtttctattgtcaaatgttcgggggattctttgttcaaaggaaatcatacttAGAAGTCTAATGTG
GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCG
GGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCG
CCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTCTAATGTGtagaacaca
taaaagcagaggagcaaaattggagtaggggaggtagccccaagtctgcacccaccttaccgcccccctcaaccactgccttcatctaatggcctttaag
gaaagccctagggcccttgagagcagggtcagaaagcaccgcactaggtaagtaggcagctccgagcttcccttccactgcctacatcgtaagcgtctct
gctcacactcagccccaagcctcctgtgtcgagtgggatgagggttttcattgtgtgggtaatgtatgggttttaatattcaagtttgcagtctctgtct
ttgatataacctgtgcatttctgaataggaacaatgtccctggcgactcctcactctgagcagcagccaaatctgca UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA 55 423 132 NA intergenic
0 chr7 103510102 103510407 1000796 0 - Yb8NBC134; RIP_Alu_chr7_103_05 TGAGCAAAGGATTTGAATAGGC AGGGTTCCAGTTTCCCCATA SINE Alu Yb8 tcccttgttagctatattcctaggtattttattctttttgtagtaattgtaaataggagttcatttatgacttggctctctgcttgcctgttgttggtgt
ataggaatgctagtgatttttgcacattgattttgtgtcttgagactttgctaaagtttcttatcagcttaagaagcttttgggctgagatgatgggatt
ttctaggtataaaatcaaggcaacctcattttaaaatgagcaaaggatttgaataggctttctctaaagaaagtatataaacggtcaatgagtacatgaa
acaattctcagcttcattcatcattaggaaaatgcatgtcgaaaccataatgagatactactttacaccattatcatggcaataatAAAAAAGATATACG
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGATATACGataacatgtgttcatgaagatatggggaaactggaaccctttcttttttatgatttcatttgatttttatttatttttaa
aattatttccataggtttttagggaagaagtggtattagattatataagtaagttctttagttgttatttgtgagattttggtgtacccataacccgagc
agtgtacactgaacccagagaaattggaactgtcatacattgctggtgggtatgtgaaatgatgcagccatttgaaaaacccttggcacttcattaaaat
attaaacatggagttaccatatataccagaaatttcactcctagatatatgcatattcaagagagttgaaaacgtgtccacacaaaaagttgtacatgaa
tgttca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 526 206 NA intergenic
0 chr7 82784772 82785079 1000797 0 - pAlu7-82545393; Yb8NBC5;1104685591424; RIP_Alu_chr7_082_01 AAGGTCTAAGCGCAGTGGAA;NA TGTATGCAGGTTGCTTGCTC;NA SINE Alu Yb8 atatttgattctaaatctagaaacatgaagagaaaatgagtagaatcttgctattatatataataaagcatatgttggaaatatagaaataaagggatta
atgtaatggattagtttgttagggagaattatgtgtatacagtatatacactatatatgtatatatatatgaatatatgtatacatacatgcactgtcac
atgtacataaaatgaatttataaaaagctgaattttccagctaatggaaaatataggaaaattaggaatttaaatgttagaaacaaatagatcacttctt
gataacatagggaaaatcacttctagatgatcataaggtctaagcgcagtggaatagaggcatgggattctaataaaacaatctgcaattAAGAACTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTCTGtacaaaacacattaaaaaaaaaccctgggggctctgtagactgatcagaaggaagatatttttg
cagaagcgataaacttggagcaagcaacctgcatacagtgagtttactgtcttactgtagctttactctggggaggtcaagcctggtcaataaatctctg
attaagaagttatttaactgattggtaaaactgggatcaagagctggttgcacttaccttagcaccgatagcttccctcccattctcctaaggatctgat
ttcctgcagaaaatttttattctgttctgcttttctctccaaatgttgcagaaacaggtactggtctttcagagggatggccatggttgttcagatcttc
tagcagatagacgggatgacacactc UCSC;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Reference NA;NA 60;NA 503;NA 167;NA NA;NA intergenic
0 chr7 95905458 95905763 1000798 0 + Yb8NBC69; RIP_Alu_chr7_095_02 CTTTCCCAAGGCCTCTGTC GCCACACACCTAAAGCCATC SINE Alu Yb8 aacaaacattattttaaaattcacatggaaccagaaaagaacccgaatagccaatgaaatcctaagtgaaaagaacaaagctgtaggcatcacataatat
gacttcaaactatactgtaagactacagtaacaaaaacagaatgttactggtacaaaaatagacacatagaccaatggaacagaatttaaaaacccagaa
ataaagccacacacctaaagccatctgatctttggcaaagtcaacaagaataagcaatagggaaaggactccctattcaataaatggtgctgggatagct
ggctagccatatggagaagaatgaaactgggcccctgcctttcaccatatacaagatggattacagatttaaatgcaagacctcaaactatAAGAATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAATTCCagaagaaaacctaggaaacataattctggacagaggccttgggaaagaaattatgagtaagtcttcaaaagcaattgcaataaaa
taaaaattgataagtaggacctaattaaactaaagagcttctgcacagcaaaagaaactatcaacagtcaacagacaacctacagaatggcagaaaatat
gagcaaagtatatattcaacaaaggcctaatattcagactctataaggagcttaaacaattcaacaaacaaaaactacataaccccattaaaaactgggc
aaaagacatgtacaggtactttttcaaaagaagacatacaagcagccaacaaacatgaaaatgctcataatcactaatcatcagagaaatgcaaatcaaa
accaca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 55 557 242 NA intergenic
0 chr7 8716801 8717116 1000799 0 - Yb8NBC237; RIP_Alu_chr7_008_01 GCCAAAATCAACTGCCAAAC TGCTGAGGATAGAGCTATAGCAGA SINE Alu Yb8 tatactattttacatcaaaaataaatatgtctaacccatgctggactagcctaacaatatgttactgacttcaaaaagaaaacaaagtaagaacaaagag
aaccaaatatacaaacatctagaaggccaatggggtcaaaaaataagtatgtccgtaaagtctttgttttcttctccaggtgtattgagaatctaggcca
ctcgtaggcagtcattacttggaaatggttcaccctttagttttccttttagtaggaatactccagggagataacttgaaagttatgttgccatatctaa
atttaaaactgctgaggatagagctatagcagaaagatgtaggaaataaaatctactttccatggaatacagtatccttgtgttatcatAAAACCGTAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAACAAAAAACGTAACagttgacatgctttgttcaacaaccatgtagaaaaacctgaaaagatttatgagtttggcagttgattttggc
cttcaatgtcatttgattatcatgtttccccttgatcttgttttcctgaaaaagtactcaaggcttaattcctcaatccagaaaaatgcttctttaaaat
gtaaaatatgagttgcagaagacagagaacaaacctcgcacattagtaaactatccctcctccctcatggaagaattgattaaaagatgaaaacccacca
caagatttccagataggcaaggaggcccatttgccccagctgcctggagacattttaacagcagggactttgagcttttaatgaaaatcaggttgaacag
tgtggaatcaggaagc UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 491 164 NA intron:NXPH1:NM:152745:2/3
0 chr7 125052347 125052662 1000800 0 - pAlu7-124805708; Yb8NBC241; RIP_Alu_chr7_124_02 GGACTGTGTCTAAGGGTGTCCT GGTAATTGGGAGCAGTTGAGA SINE Alu Yb8 tttttcactgattacttgattcccttaagtctaattttaatgatggcccttcagatatctggacacttgagtacccatttagtcaatatagcctccctca
ctacttaataaaagttacgctatgcatagatggccttcagcaaaatggtcatgcattgggcattctgatttctagtttattatgtcactaatagtctttt
atattgatcataatactctgacatcccttcattattttgtaattgttttgctgttgaggtgctgaaggtttgaatttctcatatcaaaacatcatgtata
aaaatagtaatggaaggtaagagtgaaataggtaattgggagcagttgagataaaatattgtggggaaaccctaaggaatttgacAAGAAAGTCAAGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAACAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGTCAAGTTAaaggacacccttagacacagtccaatgagataaattggtagcacctgtattgcgtttgtgagcgagtaa
ccaaaggaaatgatttatataaaattgttacaggaaaatggctctctaataatcacgttcaccttaaaataactccctgactactcgtctaagtttctca
aatttcaccactgactcaaatttttttttcttctagaattattagttaaataaaaggtaacatcagcttttagtagtgtgtgatttaatgtgattaattg
agagtaagaatattaataaaacatttcaacttatttcctgatatgcacacaataaaatatgattatgatgtggacattaactttggatgacttaacttgt
attaaaagaataaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 424 93 NA intergenic
0 chrX 76006991 76007280 1000801 0 + Yb8NBC133; RIP_Alu_chrX_075_01 GCCATTGATCCCACAGAAAT GCTGTGAATTCGTTGGTCCT SINE Alu Yb8 agaattagaaaaacaaattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacagcaaagacccttcaaaaaa
tcaatcaatccaggagctgcttttttgacaaaaaaaaataataacaaaatagacagattactgctagaataataaagaagaaaagagagaagaataaata
cacacaataaaaatgataaaagggatattgccattgatcccacagaaatacaaactaccatcagagaataccataaacacctctatgaaaataaactagg
aaatctaaaataaatggataaattcctggacacataacccttgtaagaaataaccagaaagaagtcaaattcctgaatagaccaatAAAAAGTTCTGAAA
ATTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCT
GAAAttgagacagtaattattagcctaccaaccaaaaaaagcccaggaccaacgaattcacagctgaattctaccagaggtataaagacgaaatgatgcc
attccttttcaaactattccaaacaacagaaaaagagagactcttccctaactcattttatgaggccagcatcttcctgataccaaaacctggcaatgac
acaacaaagaaaaaaatttcaggccaatatccctaatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccagcagcacaacaaaaa
gcttattcaccacgatcaagtcggtttcatccctgggatgcaaggctggttcaacatatgcacatcaataaatgtaatccataacataaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr22 29323869 29324095 1000802 0 - Ya5NBC223; RIP_Alu_chr22_029_01 GTTCTCTGTAAAATGGACCAATCAG CATAGACCTTCCCAGTGAGTGTTAC SINE Alu Ya5 tgcagcgaccggagattgttaccactgcactccaacctactaaacagagtgaaaaaataatttttttttttacgggttttaccttagagctctaatcctg
gcatagtactgtgtccggaattggtgggttcttggtctcactgacttcaagaatgaagctgccaaccttcaaggtgagtgttacagttcttaaagacggc
atgtccggagtttgttccttctgatgctcggatgttttcggagtttttttccttttggtgggttcgtggtctcgctggttgcagcagtgaagccatagac
cttcccagtgagtgttacagcttataaacgcagtgtacacccaaaaagtgagcagcagtaagagttattgcaaacagtgaaagaatAAAACTTCAACTGC
GATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATGCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACT
CCGACTCAAAACAAAAAAAAAAAAAACAAAACTTCAACTGCgtggaaaaaaaaccgagcgagttaccacagctgagtcgggcagcctgcttttattctct
tatctggccccacccacatactgctgattggtccattttacagagaacggattggtctgttttacagagtgctgattggtccgttttgacagggtgctga
ttggtgtgtttacaatccctgtgctagacacaaaagttctccaggaccccactagattagctagatacagagtgctaattggtgtatttacaaaccctga
gctagacacagggtgctgattggtgcatttacataccttgagctagatatagagtgtcgattggtgtattcactatcccttagctagacataaatgttct
ccaagtccccacaagatcagctagaca UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Reference NA 60 455 214 NA intergenic
0 chrX 106631245 106631419 1000803 0 - Yb8NBC102; RIP_Alu_chrX_106_02 GCCTGCAGAATGGAAGAAAC CCAACTGAGTCCCCAGAAAA SINE Alu Yb8 tcctcaaaatcaccagaggatatgaggcaggagtgattcctgatccctgtggaatgagtgaggaaactgaggcttggagaggtgagaaggcttttttgca
tggatagctactgtgtgatgtccaagctggcctagaagcacagctcattcccatggcaccccacacgcttatgtcattcatcttctgcactgcccctttg
aggccccaactgagtccccagaaaagtgtacatacgcacacagacacatatatattttgcttactattgtgtaagcagtcataaaacctctgagggtcag
gcccctatgtcagtattttttacaagctgtccaggtgattctaaggtgcagccaggggtgagcaccactgcctgaaaagaagatatAAAAATAGGAGACA
GGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATAGGAGACAagagaattggc
tttagtggccaagagctttctttaaaaacctttggcctccccaataggaactgaaggtagagtggatgtgaactatggccctagcttccatgcctcagtt
tcttccattctgcaggcctttgcaatccttcccccatgctgtggactagcttaataaattagacatcactgaggttgctgtgggaaggggtataaagaaa
gaaacacatctctctccccatatgcacatgcttgccaattgctgtgtaagtgtatctttaatattttctgcctgcaagggtggagctaaattgccctgat
taaggaagccatggggtctaactagaggtgaaggatagatatttgctgtcaatcaactagaaagaggtgctcctc UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrX 85427779 85428067 1000804 0 - Yb8NBC30; RIP_Alu_chrX_085_01 TTGCCTTGGATGGCATATCT AAATGGCCGGAGTAAGTCCT SINE Alu Yb8 tagaaacaactaaaagtttaaaagttggagaatgaagctaaggcataaagttattgttgtttcctttttgcttgtttgtttgtttgcaagtttacgcaaa
cagtgtaagttgtcatgagcttaaaacaatggtttataaaataaaatttgcaattcccatgttaaccttaaagcaaaaaaatacaaggggtccaaaatat
atatataaagcaagaaactaaacagtatcaccagaggaaaccaccttctctaaaaggaacacaggaagggaaaaaatgaaggaggagaataccacaaact
accaaaaatcaaacaacaaaatggccggagtaagtccttacttaacaataataacaatgaatgtaaatagactaaactctccaatcAAAACAGACTGGCT
CCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCTAGACCAACCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA
AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC
TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACAGACTG
GCTgaatggatggaagaacaagaaccattgatttgttgcctacaagaaacacacttcacctataaagacacatatagactgaaaataaaggaaaaagata
tgccatccaaggcaaacaaaaaagagcatgagtacctacatttatatcagaaaaactagatttcaagaaaaaaaactatgagacaaagaaggtcattatg
taatgataaaggagtcaattcagcaagaaaatacaatttaaatatatatacacccaacactggagcaccgaaatgtataaagaaaatattattaaagcta
aagagaggtgagaccccaatacagtaataattggagacttcaataccccactttcagcattggacagatctttcagacagaatatcaac UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:DACH2:NM:053281:1/12
0 chrX 140045003 140045321 1000805 0 + Yb8NBC8; RIP_Alu_chrX_139_01 AAGAAAACTGATGGGGAAAG CCAACTAGAGAAACGGAGAA SINE Alu Yb8 attatatatttgttggcttctgatttggaagctatgtgaaggcagaaacatttggttagttttattcactgcaaaatcacccagtgcctagaagagtact
tcacaagtgggaatctctcatgaaacacttgttgagtgattgtgtgactgattgtggactaacttatactaaaagtgaaaataaataaaatattagctct
taaggcaaaaagatgttcaggcaaggagtgccgagtgaatctgagcacggagctattgcagccaactagagaaacggagaaacttggaagcttggaagtt
atagataaggaaataccaaagaagagtttgaagattacagattaatccagtatcttaggactagaagagaatgtgaatatttgtcttAAGAAGAGATGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAGAGATGGTgagtgggaaagtgatgtaattagatatgttccatgcatatcataattattgtatgtaattattggtat
tagtgccttaatttactctttgataggcctaggttctaccctttccccatcagttttcttctgagttcccaatctactaggtagttgaacaggtaaaatc
tgtttatttaacttcatattaatctattcctatgtaatgtgtatatgtatcatgtgtgtatatattatataatctatatgtatacatttctactaagctt
atgttcaatgttagcagtagtttctttttctccagtccttaataaagtaattaatattctgatgaaaacagagttaagatacttatgttaggctgggcgt
ggtggctcacgcctgtaat UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrX 151668164 151668484 1000806 0 - pAluX-149665515; pAluX-149635670; Ya5NBC131; RIP_Alu_chrX_151_01 CCCAAGATCTAGGTGATGGACAC GCACTTGAGATAACCTAGTTAGAATGC SINE Alu Ya5 cgaacactgggattttgttgttgttgtcgttgttctccaggacttatcagagaacatacagctcaataggacatggaataattagccccaaacagaagct
tcttccataaaattcagttaagtatttcctcttagagaatgcacttcaaaatttggttgtgcgggagttttgcccagccaggtgcagctcaaagctccta
gaatgtgagtcaaagaccaactccttccctctctcccagctgctttcccatccaaaccactatattcatccactttgttaccatccagaatctagcccgt
gcttacaattggtcaaattgcacttgagataacctagttagaatgcctttttaatggagtcagctctggctctccctgcctggcAGAAAAGCACCTGGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCTGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAAGCACCTGGCCagtggcttctgggtcacccttcctgggaaattcagccttatcgctcaggaaacccttgcagat
gatgggtgtccatcacctagatcttgggctgtgttcaacagcattgggcaaaaacacaggacaccttccattccagccccaggtggagattcctctctct
tcatccccatcctaaagaaactgctcagggtagcattccattccaggcttttctctcaccctctgagaatctggccctggacccaccgggcatcattaga
atcagctccttcagaaggaactgcaggttcccagatcccaaattgccccagctcagggcatttatactcaccactctcacctggaaccccacaccctcac
ccctgtcttacatttccacta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 25393198 25393537 1000807 0 - Yb8NBC108; RIP_Alu_chrY_025_01 TGTCACTTGATTGTCCGCATA TCAATGGCATCCTGAAAACA SINE Alu Yb8 cctgcttaactggaatcgtacatataaaattcactgaatctctctaatagcgtcataatactttaaatgaaggaagtaatgatcatgtcctagtcctcag
ccagcaggtggcgctcaaagctaacaaggtaagcaatgtacctcgttttctgcaacgtacttcacttttaccatggctcgagtagcagggattgttcaat
tccgactgtgtacttatacataattatataatgtatatataaaaatccacaatcaacagacaaactttggttagttttaaactacggccaaaaatataaa
tgaatgcttcggataagcaaaagtttagtttgaaagaaagtaccatcgtaaccgtcaatggcatcctgaaaacaaactgcattaAAGAAGTAATTTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAA
TAAAATAAAACAAACAAACAAACAAAAAAACACAAAACACAAGAAGTAATTTTCTTaaccgtatcttcaagtgagttgttgaattttcaaatgagaaatg
ttgcaatagtaaacaggggtgagcttcaagaccgtcataatcacaactctcattgctatttctagcaaacatattccttgttatatgcggacaatcaagt
gacaaagacagctaaaagctggaaaaaattatcattaaactcctgccatgtcagctcctctgccagtattatctaatgcaattactatgtgaacatgtaa
gcaaattgttatttacataaactggccaggaaaaagcctatcatttgtagtcatcaaagttacattcacagcaataggaagaggagcaaataaagagaat
gctaaaattaagaaaatatgacgtgaaaatcagaagttaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intron:DAZ4:NM:001005375:1/23
0 chrY 14391181 14391491 1000808 0 + Yb8NBC109; RIP_Alu_chrY_014_01 GTGCAACTTCAGTTTCTGCTAAGAT CATGGTTATCTGCAAAGACTATGAC SINE Alu Yb8 gtttagagagcagtctttgtgagattcaaatagatcttacaccttgccagagactgaaatgcccattgatgaaaatactttgcacagaaggactgctgct
gaggtggaagttctcagagagctctggaatcctatttggctcatgtgattaactgtaaagtcagaatttcaaaagccctcaataaatatataacacaaac
aatggttttcaatcatttgtgcataagagcagccattaggtactacctttcctaaggtgagtaaggttaaatcctgaagtagctaagaaacgttgcaagt
catggttttaactgtctgtgcaacttcagtttctgctaagatttttcttgatgaattttcagttatatttatttataaaaaatcctatattAAGAATCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAATCCAacagctacaacagttaaggaaataaaagaactaagactacaaaactcttctagtcattacgtatcacctaaagtacacta
tagccagttgtaaatttccatcatgtcatagtctttgcagataaccatggtgaagaatgtccctggaggtgaaggtggcaagtaagctgtaatctcacca
ctgcactccagcctcggcgacagagtgagaccctgtctaaaaaaatattaataataatagtaatgtcattcagagtcatgtaaaattgttttctttctgt
gttggtcttgcatttttttcttctttgaagatgattttctttgtttttttttttttcagactttttgtctttattagtggttgacaggggctggggaggg
aggaatgaaaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 14192735 14193039 1000809 0 + Yb8NBC110; RIP_Alu_chrY_014_02 AATAGGCTGAATGCCCCAAT CTAGCATTGCAATCCCTGCTTT SINE Alu Yb8 tctcactctttgctagcacagcagtctgagatcagattgcaaggcagcagtgaggctgggggaggggcgccagccattgctgagttagttgtttgattag
gtaaacaaagtggctgggaagctccaactgggtggagcttcaggaacttggaagagttcctgaaggaagcactaaatatggaaaggaaaaatttttacca
gccactacaaaaacacactgaagcacacagacaaatgacactatgaaaaaactacatcatcacggctgcaaaattaaccagctaacatcatgaagccagg
atcaaattcacatgtaacaatattaaccttaaatgtaaataggctgaatgccccaattaaaatgcacagactgacaagctagatAAAAAGATAAGACCCG
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAATAAGACCCAttagtgtgccatattcaagagacacatctcatgtgtaaagacacacacagattcaaaataaaggcatggaggaaaattt
tccaagcaaatggaaagtagaaaaagcagggattgcaatgctagtttctgacaaacacaacttaaaccaacaaaggtcaaaaaagacaaagaagagcatt
acataaagttaaaggtttcattcaacaagaaaaactaactatcctgagtacacatgcagcaaatacaggagcacccagattcacaaaatgagttattaag
acctacaaagagacttagacatctcccaagaaataatagtgggagactgtagtagcccgctgtcaatattacacctttcagacagaaaattaacaaagat
attca UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 7330273 7330590 1000810 0 - Yb8NBC160; RIP_Alu_chrY_007_01 CCACACATGGGTACCAGTCC TTGCTTACCCACAGTCACCTC SINE Alu Yb8 aattcattcaattcattatggcatgctctctctcttacactaaattttttttttaaaggtagagatacaattattatcttcttccagcaatagagacttt
ggcagtatatagtttaggcacaggctcagccacaatgacatcatctaagatcagaaagagaacagaaagaaaaggagccactgcagagtgcactaagtta
gggcagagtcaaccctactacacctgcaacccacagcctctcctctgtgggactcactgcttcctcccctccatctctctagtgcatgaaccacatctct
aataaacacacgactctttctctcctgccccacatcagggatccccaagccctaggccacacatgggtaccagtccctggcctgttAGAAACTGGGCTGC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCAAGTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAGAAACTGGGCTGCataataggaggtgactgtgggtaagcaaacaaagcttcatctccccattgcttgcctgagctccccat
tactgcctgagctctgcctcctgtcagatccgtggcagaattagattcccataggaactcaaaccctattgtgaactccacatgcaagggatctaggttg
cactctccttataagaatctaatgcctggtgatctgttactgtctcccatcaccatcagataggactgtctagttgcaggaaaacaagctcagggctccc
actgattctacatgatgctgtgttacataattatttcataggtagtatgacataataatagaaatacagccagatgtagtggcttatgcctgtaatctca
gcactctgggaggctgag UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 6003996 6004310 1000811 0 + Yb8NBC268; RIP_Alu_chrY_005_01 TGGGGATAGAGGAAGAAGACAA CCTTTTCATCCAACTACCACTG SINE Alu Yb8 taagaactacttactacttcatattagaactactactgtacaaccaaaccccttcaaagagaaagagcctgtaagagtttgtaagagcaaataaagatat
ataaaaattatattctattttttcttaaaaaaataagtgtgtaaataattatatattttgcctactcagttgttccaattaagcctttcaaacagaactt
cttcaactaggttctatagatgagtttcaagaagtcctagccgatgaaaattatatgcaacaatttgtatataggtgcaaaattacatgtatttgatggg
gatagaggaagaagacaaaactttatcagatttccagagggagccatgactcaataaagtttaagggattgaggactaagaattttAAAACTGGTAGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAACAA
ACAAACAAACAAACAAAAACTGGTAGACAagagatgcgaaagaagactgttgaaataatccaaatagtaagtaataaggctgataatatgtcagtggtag
ttggatgaaaaggttagatttgagaaatatttctgaagtagctgctttatctcaagtaccctaggaaacagtgtctgagatagaaatttgcattcaaaag
attgttgaggagagctcttggaaccaaccctgtaaggccctgaaggaagcaggactgggtagaaggcgaaataaaactgcaatgcttttataacagaggc
ctcagcgcatcttaaaagcagctctgagcttggtgtggcccctcagaaatgtgtggcactgaggcaatagagcgaggccttttcattcctgcattgacct
gtgagaagatgcaaa UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 14324495 14324783 1000812 0 + Ya5NBC154; RIP_Alu_chrY_014_03 AAACACCCTAGATGCTGGGTAA AGATGAGTGAGCCTCAGAACAAAG SINE Alu Ya5 taagcgggcctgtgggtgacatcaactcatttacataggagggctataaagtagcgcctgcccatcccgtcctggcaactccgcggtggacactgtgtag
actagatttcactcccttacgcgcctggcttaggtaagccccagggcccctgcatccttactccttctaccctccccttcatgccgcgcttgccccttca
ttattcgcgtccctgtgaagacatcccctaaagccaagccgagtgattatccccgggaaagctgccttggggaggtggggatgcgaaacaccctagatgc
tgggtaatgcggtggggaaatcgatgatttaagaacaaagcaaataaaccggcgtttatgtactgccgctcggagggttcgtgttAAAATTTCTTAGTGT
GCCGAGGCGGGCGGATCACGAGGTCAGGAGATGAAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTA
GTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAAATCCCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAGTCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTCTTA
GTGTttgctctcaaaggtattgtgcgttgtcttggaggctgagatgtgggaacagacagatcctttgttctgaggctcactcatctcccgagccccgagc
cgtctcccagcctcagacggctctgcgggctgcatctgtgcagcctggcagcggcggcgctgcgctgtgacattttcacagcccttcttgcagaggcatg
tgtgctagggatgccgaaatgccgagagcgccggcaggactagcttccgggccgcgctttgtgtgctgggctgcagtgtggcgcgggcgaggaagctggt
agggcggttgtcgcaagctccagctgcagcctccgcctacgtgagaagactagaaagcgggcgcaggaccaggcctgcgttgtttgcag UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA promoter:TMSB4Y:NM:004202
0 chrY 13650287 13650593 1000813 0 - Ya5NBC155; RIP_Alu_chrY_013_01 TGTCAATATCAGACAGATCCATGAG ACTTCCAACTATGTGGTCAGTTTTG SINE Alu Ya5 caagacccatcagtgtgctttattcaggagacccatctcatgtgcagagatacacataggctcaaaataaagggatggaggaagatctaccaagcaaatg
gaaaacaaaacaaaacaaaaaagcagggattgcaatcctagtctctgacagaacagactttaaaccaacaaagatcagaagaaacaaagaaggccattac
ataatggtaaagggatcaattaaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcagcaagattcataaggcaagtccttaaag
acctacaaagacacttagactcccacacaataataatgggagactttcacaccccactgtcaatatcagacagatccatgagacAGAAAGTTAACAAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAA
AAAAAAAAGAAAGTTAACAAGGAtatccaggaattgaattcagctctgcaccaagcagacctaatagacatctacagaactctccaccccaaatcaacag
aatatacattcttctcagcaccacatcacacttattccaaaactgaccacatagttggaagtaaagtcctcctcagcaaatgtaaaaaaacagaaatgat
atatttatattattctaaatgtttcttggtgcctatttttttttctaattttttggttgttcagtttggacaattcttattttcaaatgtattggttttt
tgtgttatctccttataccatggagcttcttccaccaaatatactggtgttgttgtcatttactctgaaatgctcaaaatactcttgattgtcatgagtt
gatttta UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 16352486 16352783 1000814 0 - Ya5NBC174; RIP_Alu_chrY_016_01 TCACTCTTTGTCTTGCTGACTACAG GCTATAGCTTCTATTTACGGGGAAT SINE Alu Ya5 tgggcaccactgagatatagcaaattgcacagagaaaagctcctattcagctgtgtatagtttccctgaatctcatctttccccaaaaccatctgataaa
ttaccttccaattgattaaatttcctctaggaaggtactatatacatcaacctcagaccttgtttctatacaaaatcaactgttaccatggctgactgtt
cacttcctgaatggctgttaaaatggctaactattcactgcctacttcaacttcctgagttttacacccatgctcactctttgtcttgctgactacagct
tctgctacaactatttagatataccagagaaaacaacaacaattgacaagactggagcttcggcaaaagtggtcgcacacattaaaaagTGAATTTTTAG
GCCGGGCGCGGTGGCTCAAGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTGTACTAAAAATACAAAAAATTATCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATG
AATTTTTAGtaaaaacaaacaaacatcaaacattagtcttttattctttgagaacttaactgcgattattctctattccccgtaaatagaagctatagcg
caatatgaaaattagtccatttcaaaaataactatagtgaagcattcagcctgtacactatatacatctgtatcaaaaacaatgtaaagtttgtggaaat
aaataaagacttccttcctctttcacaaatgagagcaaacagagactttttagtgagagcttgctccaacaagggagtctggcgctatcacttgcattta
ggaaagactcaaaggccagtggaaatactttatggtgaaaacatgttacaggtagttaggcatgagctggacaggagaggactctccctgccacctac UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 4606820 4606821 1000815 0 - Ya5NBC313; RIP_Alu_chrY_004_01 CACTTGCCATTGACTCCAAA GGCTGGGTTGTGTGAGTTCT SINE Alu Ya5 aggcctaaagctgaagtaaacagtggtgctaaatatctcacattctaaagcagtggtttttataactttatcgtgtgtcagaatcaccttcagggactgc
caaaatacacattgcttggccccacctctaggtcctaattcagtacatctgaagagaagcctgagagttggaatttcccacaagtttataagttatgcta
ataatgctgttccagaaacacactttaagaaccactgcgataaagagagctaaatacatttctcagggcttaagagttgaccaagcctgctatactacca
cttgccattgactccaaattctgtcttcgcaatttgtataagaaaaattagaacaggagaaataaatagttgttagattcaatagcttttAAGAAGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGTGTCaaggtgattgtgaaaaccatttctgttcttattctggctataggtccatctaagaactcacacaacccagccagccttttcatgcctaccaaa
cacaggttattaatgattgatgttagacacaaaagtattgacaatccacagataaatgactacaatagtaccggatatctcttccttttccttccatcct
tcatatttctgcacacaggagaaacttagtcttaatgagggaaaggttgcctcaggtccggatggcagttcaagcttgtgatttcagggtggtggggagg
agatgagattaaagtgtggcattcacaagtctctcaatctgttacctgttctgtaaaatggagataattgtaaattatgtggccattgaaaagttta Other - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chrY 3454333 3454639 1000816 0 - Ya5NBC325; RIP_Alu_chrY_003_01 CTTCTCTCTCTGAAATGCCAAT CAGTTGAAAGGTTTGACAATACACC SINE Alu Ya5 aatgccagcctttgcagatgaggaatcagtgtaaatcctggcatcatgaaaaaactgaatattgtgagaccaccaaaggataacactagatctctagcaa
tggatcctaaccaaaccggatattcagaaatgatagatgaagaatacaaagtatggattgtgaggaaactcaaagaaatccaagagaaggtttaaaatca
gcacatagaaacaaaagcaatctgagaaatagaagagataaatatatttaaaaatcaaacagaatttttggaaatgaaagaatcacttatgtaatttgga
actacagttgaaaggtttgacaatacaccatattaagcataagaatttcagaacttgaagatgggtaattcaactaagtcagataaaaatAAAGAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAAAAAAAGAAACAAatgtaaaagaataaacaaaaccttcaagaaatatgggattatgtaaagcaaccaaacctgtaatatattggcatttcagagag
agaagaagaaaaattaggcaggctagacaacatatgtgagagaataattcataaaaattgccataatcttgctagagaggtagacatctaagtacaagaa
atccacagaatgccttcaagaggctatacaaaacaaacattatcaaggaatatagtcactgtattattcaaggtaaacactaaatttaaaaatcttaaag
gcagctagagaaaagggttaaatcacttataaaggaaaatcgattagactaacaacatacttttaagtagaaaccttacatgccaaaagatattggggag
ctatttt UCSC - Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr1 189128389 189128685 1000817 0 - Yb8AC1011; RIP_Alu_chr1_187_01 GCCTCTTTTCCTGCTTGAGA TCTTGGCTGGTGTTACATGC SINE Alu Yb8 tgactttgctcagtgtatgaccccaggcatgaatcatgatttttttaaactaaccatgacactcttatcccttctgtcatattggtaacattcccaacct
cttctgcagccatagatgtccaattgagcatgctctaaccaatgcagtgtaaaagcttcaatgcttgtgtgcctcaggggatgaaaaatgcttcctaaaa
aaaatgtgagaggcaatcagagaatggaaaagctcttactcatgtgcctcttttcctgcttgagacgtttgattgtgagaagttgaagttattctataac
tttcatgagactgtatttcctggacattggaatccaaagcaagggactacagagtaattcgacagagcatacttgagaatcaaatAAAAAACGTGGCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAACGTGGCATGtaacaccagccaagatttgaatttgaacaggttattttacctgattttgtcatctgtaattaaataaacctaaaagagtgaatacttt
gagaacaaatcaaatagatgtgccactatatgttaaaaaatacaaagattactagttaacagttcatcatatggaatttaacgcaaatatcttgtggcta
ctttaatttgaaatatgtataatttgaactggatatatttgtatgaaaaatatacaatgtactttcagaagacgcactacacttgttcaaacattataaa
cactatatgtgtgtgtgtatatatatatatttgtttctaaatgtatgagaaagtttaaagaacatcgtaacaaaataaacaaaaaagcttaaatgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 482 170 NA intergenic
0 chr3 31694297 31694602 1000818 0 + Yb8AC1152; RIP_Alu_chr3_031_01 GCCTGCTGCCTATGAGAAAC CTTTTAGCCCTCTGTCCCCT SINE Alu Yb8 ggccatgcccaggcccacccacagcaggaaaacatcaggtgagtggccaggaagggccatgtccaggagaggcctttcacagtctctctccagaatcttc
tttctgaactcagcatgctattgagaaattctgagtggcattttcaagcagttagaaaaagtgagagcaacaaattctaattctgcttcatctgcaggct
gcatctgagggcctcaggagagggtgttccacggcttctcacccacgacactgtggtcctgggctgggtaaagtgaatcaagggctccagcctctgcctg
ctgcctatgagaaacagaggagctatgatcctgagacctcacaggcctaccctgtggagacacggacactcaacaacggccaacatAAGACAGAGCAAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAGACAGAGCAAAGatgttggttagttcaggggacagagggctaaaaggacctcatcactctctcaagttcagctgcagaggcaatgacaggag
gccatgtgctgtgctgggctgaggggtgccccgttgacggtgtggcttaagtgaaacggctagagacaccagagggagacaggaaggacaagggtgcagg
gaagcagagggaagaagatgatgatgaacatgctgtgtagagggaagaagggaaagatgaacacattgtgtggggaagagagaataaccagctttaaaac
acaatcacacacgtgacaccactgcacagccacctccttgtcggagcccaccgctggtggtcggggacaggggaaaagtgactgctatttggtagagaag
gaagga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 459 139 NA intron:OSBPL10:NM:017784:9/13
0 chr5 18800819 18801139 1000819 0 + Yb8NBC505; RIP_Alu_chr5_018_01 TGAGCCTATGACTGAGCATGA GGGGCTCTCATCAGCATTTA SINE Alu Yb8 atattagatcctaaaactaaataggttagtgttttttttttctgaactgaaatagattaacagaatatattaactgaagtaactttgtcctattatttat
aattcttattagacacatgtaattgagcctatgactgagcatgaagactctataaaggacatcgatcaagtatacaatataattttctttaattttgatc
tgaaagacttaatagaaagactgaaatcctgttaaaaaattgattacatttctactggatttgggaaatatgtagcatcagtaataaagtacttaatgat
catttattgtgtttggtgtatgatttattatatccccattttttataaccctcaaagtatttgcaaaattaatagaactttcttAAGAATATAGTGACTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGTCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAATATAGTGACTGtcctcaaaatccacttaataagttgatagcctcaaatttatatttcacctactcctccaaaat
aattatctgtaaatcacagaattcaaggaaagagatggcttacaaaaggaagtatgacttctcatgttaaatgctgatgagagccccggtaaagttatga
gtggttgtatataagtaacactcttagaaatcatgattttcataaaatgtcacttcagcaaaatgaccgggtcaaaatcaatgtggaaaaaatgggtttt
ataggttgacaaatctgttggtttgtttactgaatttttaaattaggtagctactctagttttccttattcatatattcatattacactatgtgtcaggc
agctattttggtgtggcatat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 60 764 427 NA intergenic
0 chr6 98797935 98798250 1000820 0 + Yb8JW830; RIP_Alu_chr6_098_01 CTTTGCTGTGCCAGGAATTT TAGCATAGTCTCTGGCATTTTGG SINE Alu Yb8 tcagtcctctgggctgaaacgaggaccagataatattttagcaaaaaaggtgttttgttttcacgctttcatcatgcaaaaataacccaactaatttagc
cctaacttccaaaaaatattcagttttatgcagaaatcaactatgtagatctcaggccaaaaggaatatttatcagaaaactctgaagcaaagactttta
taaaaatatactcttccataaagttttattttcagtcatctttgacatgatgtaaatgaattactgcattattgcttcctagttatctcttatctttgct
gtgccaggaatttgtgagttttttaatataaattttgatcatttaaaattataaacccctggggtcaggcttaaatattgtaattttaaaatAATTATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTATGAaatataatagcatttcacatttttggtgctcccaaaatgccagagactatgctaaatactgtgtatatatcatctc
ttttaagtgtaccacaatctggagagggaagtataattgttatctccaatttgtaggtaaagagactagcccttaatgggattaaataatttgtactaag
taatactaagcaactgtatttactgggtgatggagtcacgattcccctaccccatgcctctctgactccatactccacttgaaagtagcatcctctttta
gaacagccccaatatagccctaatcaatatagttatagacgcttccccagaacagacagaaaaatagtcagcaggttcatgaaaaatgttaaacattact
aatcatcaggaaaatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 485 161 NA intergenic
0 chr8 138978353 138978557 1000821 0 - Yb8AC1439; RIP_Alu_chr8_138_01 TTCAATCAAGGAGGGTTTGC AAGTGAGCCAGGTTCTGTGC SINE Alu Yb8 ctttcatctctgagatctcaatttgtagtcactaacattataatttcatgactttcatgtcataaaatagcaggtacatttgagaagtagggttcaatgt
gatttactatggacctggccatttatatagcattttatatttcataaatccctcccacataaacctcattatcagatctttgtcatgcttgtgagtatca
tcctttgtgttgtaaagggacataaaatgattttaatgagacccaccacgtgctgagctccatgctattcaatcaaggagggtttgcatcatacctactt
agattcccgtcttagccctgccagttaacagctctgccattactttccctttgagagatgcaataaactggggataatcatatatacgtcAAGAGCTGGT
ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGAGCTGGTgagcagatacgtaagacgaatgagtccttgtagcacagaacctggctcacttattcactctatcaataaatatttattatcttag
tttgtaagcaattgaacaaggtgattgtaggctatgaaataatagacttctgtaagctttcagggtttgtttgtttatttctttgtaaatacaagtcatc
taagaagtaagagataaagtggtctgtggaacaaaagtgtggaagggtgttttggtgtgggcacagagtgtgtgggtctttgtgttttgcattgatgcca
accagagagaatgtgccacagatgaggaactgaaacacctgtaggacaggtgcacatcccactggatgttgaccccctttgtgtttggcaacccctgttg
ttatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 400 185 NA NA intergenic
0 chr9 25967741 25968048 1000822 0 - Yb8NBC522; RIP_Alu_chr9_025_01 TTCTGAAACCTCTCTGTCCTACAA GAGCCAGGAACAAATGAGGA SINE Alu Yb8 gacggtggagcatcaatgggttgaaagaaaataaacttgagcataaactttatatttagttaaaatacactttagaaatgaagttgaaacaaatttatat
attttacataaatccatactaaaagagttcgctaccagaagatcagcagagagaaaaatttcgtaagtgaattggagagccaggaacaaatgaggaatat
cttatacatcctttttcgttcattattttcatattctagttcacaaacttagtttaaatgttaactactttaacttgatatatagaatatttgtctgttg
tttttggcatagaaaatgcatatttatctgaaaaagttaacaaaaaataaaaactgtgtttatgattgagcaaatcaatttgtattttcattAAAAATGT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAATGTaaatgaattataaaaaattcttattcatagttgtaggacagagaggtttcagaatttacttttcactttactacatcattacat
gttcttagttttaaaatttcttgaaatgtatctgaccaaaatgtaaagctgatttattttatgcaatttacaactctttagtttgagtttcaacagttaa
cataaaactgcatgtgtatattttatgtgtcaataggcatgaaaattatttcagtggatagaaggcattttttcatatttggatcacctacggaatgggg
gtttctaagctaagctaaattcatatcaatctgaacagctaaaaattcaggtaattcaggagattccattatgtatgtgaatttagaataccaaaaaatt
taaactgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 594 278 NA intergenic
0 chr9 3068466 3068775 1000823 0 + Yb8NBC585; RIP_Alu_chr9_003_01 CATTGGGTTTAACATTCGCTCT CACGTGTGCAGCAATGTATG SINE Alu Yb8 taatatctctctgtatcatggcctctttaaaaaaaaaaaaaaggatgagtaggtacagggagaggcgaaggatttggttgttgtggggaaagggaaatta
ggcaatttgcttattagcttatttgcttcttattcatttattaattcaagaggatgaatatataaatgcttcataaaattcaaaaggtagaaaagaatat
gcagtgaaagtaagtctccctcatgcttttgacccccagtctccaattcctctctccaaaggtgaccactgttaccagttgtgtacccttctagagatac
tttatacacataccaatccatgtttggctatattgacattgggtttaacattcgctctatccaatgtcttgctgtatatcatcttAAAAAGCATATCCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGGGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGCATATCCTGggttctgcaccttgaattttttaaatgtaacaatatatcttggcaattattccatgtcagtacatatagcagtgt
ttcatcctttccaatggctgtatggtattccctcatatgactgtatcaggtttttttcataccacttgctattacaaaaaaactgcaatgaactcatgtt
acatacattgctgcacacgtgcgtaagtgcacatgccttttctctcctctctggcttattttactttcctttaatctctggtttctgtgattatgctata
ttatatcttggagtttatatctttttggtttgttctgcttagaattcattgggtctattgagtcaaagattcacctttcagaagttactgaaaattatta
gctctttatc UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 585 260 NA intergenic
0 chr12 1222333 1222644 1000824 0 + Yb8NBC3; RIP_Alu_chr12_001_01 AGATGCGCAAGTCCCTGATA ATTTTTGGATTCAGCCAACG SINE Alu Yb8 aaacttcaagccataaaaagatgaaaaaagtattagcaaatgctctttattgtattcacctataaaataacctttcttcttatgaaaacggagtcaaatt
ccttacagagctcctgtctctaaaggttgtgagcattaatgagatgatacatgtaaaagcttctataagagcaaatgttaacaggattggactaggtagt
agtaacataacaggtacagtgggtcctccatatccataggttctgcatttttggattcagccaacggtggattgacaatattatggaaaaaaacaccaat
aaaacagaataatacaacaataaaaaataaatagaaaataatatagtgtaacagctatttacatagtgtttacattgtattgggtattagAAGAAATCGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AGAAAAAAAAAAAAGAAATCGAgagatgatttaaaatatatgcgaagatgtgcatagattatctgcaaatacgacagcattttatatcagggacttgcgc
atctgtggattttcatattccaggggagtgttagaaccaatccccagaagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggt
gctatgtagggatgtaatgaaacgtgagagatactgaggtgctatgtagggatgtaatgaaacgtgagagatactgaggtcctactgtagggatgtaatg
aaacgtgagagatgctataattttcttgtaaaaggaggcactcacttcattaggagagaacttttaatttttccggtaggattttgtgagaaatttgcct
cgtgttacttca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 61 558 236 NA intron:ERC1:NM:178040:13/19
0 chr14 70955950 70956266 1000825 0 - Yb8AC870; RIP_Alu_chr14_070_02 TAAATCCAGGGAAGAAACGATG GTCTTTGTGTAGGGACTTTCAGG SINE Alu Yb8 ttcatatttctatcctggctaatactaagcaaaatgttctctacataatagatataaaataattatttgcttaattaacttttccactaataaatccagg
gaagaaacgatgtcaacaaacacagaatatctaccttataactacaaaagctttaaggtttttgttttgtttttttgagacagggtcttgctttgtcacc
caggctggagtgcagtggtgtgatcatggcccattgcaccctcaacttcccaagctcaagcaatcctcccacctcagccttccaagtagctgggactaca
ggtgcatgccaccatgtccagctaatttttttttaagagatggggtctcactatgttgcccaggttagttttgaactctttgcctcaAGAGATCCTCCTT
GGCCGGGCGCGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAGAGATCCTCCTTgagcctttcaaattacaggattacaggtgtgggccatcacccctggcccaaaagctttcatttcaggcca
gaacagccctgaaagtccctacacaaagacagatatttatcaaatgttacctagtcaatttctcaaaacatttacttttcagttgactggaaaaaaacac
tggtcggtagcagacaagggtcagttactgaattaagctatagacttaaaaaaaaaaaaaaccctgaaagaaaacaaagtccgttagctctacagcaacc
attcactatttaacctactgaacgctcatccagagtgccaatcagaccgttttaattaaggaaactattacaggcagaactcaaggctagtcatgtgctg
agacagcaacggttcag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 740 410 NA intergenic
0 chr16 50561908 50562238 1000826 0 - Yb8JW813; RIP_Alu_chr16_050_01 AGAGATTTCCAGTCTAGGCTTCG GATGGTAAACAGCGTCTTTAAGC SINE Alu Yb8 cttctctcctctccttcacctctgcaatcccatgtgtctttaaagtgagagtcattggccattctttggttactccctaaaataatatcaaaatacaccc
gctctcatcaaaatccaatgagacggcatatgcagcatttgcttaatgcacattaaatgctcgataagttcaatttccttttattccctctaacgggaag
agagtgtctccctctatttctttccttatcggcctggtcagtgggcagccgactttcaaaatctgtttatttgcttagtaaaagtttgaggtaagcaagg
tttgcctgagctattgcatttccctgaaagtctattgagtgtagagatttccagtctaggcttcggatgcagagaggcttgggtttaaaagcCAGCTCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAGCTCAGtcaggagctgcagaagcttaaagacgctgtttaccatcctttgtgaaacgggaatgatgat
gatgacccatcactcactggagggaatgaatgcaaagtgcctagcacatgtatgcatccaatacatgccacttcccttcccctattaaatatatatttat
tcctttgacttacccctgtgcttttcagcatgtccatttcccatggccttggctactgtgggggaagagggcactcacagggtgttttgccttccatcaa
aaccaacctcccctgctctctttttctaagtatcctgccttctcttctacttgggatgagttaatcagatgaactaaacagagtcagggcgcgctagcca
acaaggttccagaaggtggttaatgtgaaca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 435 98 NA intergenic
0 chr20 58360124 58360431 1000827 0 + Yb8NBC444; RIP_Alu_chr20_058_01 GGTGATGCTGTCATTTGGTG GGACTTACTCCTGCCAGTCCT SINE Alu Yb8 agggctcaggtacttctccttgggttaaaccgagcttttttcaaaatgttgcttaaggaccatgggcgtaagcattgcctgggtttctttttgagccttc
agatgcctgagccgtctccagacctgctgagatgaaacaccagggctcgggcccgggacccaggcatgcttaactccaggaggagtttcttatgcactct
gaagttgaggcccatggaatgggcagtagtgtgataataagccctgtaagtgattattaaacctccgcagtcctgggctcaactttgatcacctgtatgg
tgatgctgtcatttggtgattagggagtatgaaggtcaagttggaacttcagcagtttcaaagaaactcaagttgaagagggatgatAAGAATGTGTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCAGGAAGCGGAGCTTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAATGTGTTTGttcctctgttcatgatcttagataggactggcaggagtaagtcccttcccttgcattggacatctgtgcttgcctggca
cctgtacctgggaaatggaatgtgtgttttccttttatggaaccacgcttctcctgtttttggtccagggggtttgagagaggctgactccatccctatc
cataagggaacctccctggacctggcctagacagccagtttttcctgtttctttgactatagtaatttgttcagggatgggcatgactcatcaagcaaag
aagacttgagacttgtgcttaggggactccttttttgggaaagagctctctctgccggaacaacaagctgatcagaggtgagcctggtgctgctagtggc
caccagaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 467 146 NA intergenic
0 chr1 58115812 58116123 1000828 0 - pAlu1-57700822; Yb8NBC461; RIP_Alu_chr1_058_02 CCAAAGTCATTCTTCATTCTGC GACACCCGAAAAGACTAAAGACA SINE Alu Yb8 aaatttgtttccacgttacttgcaatgttgacaaaaggcaaacaatcaaaatttccaaaaataagaaaaagattttactgaagttcttcacacttaaata
atgcagtcattaaataaaacatatttctaaagaatttttcatgttgttattgacatatggacataaagataggcttcagagctttatatacaacaggatt
ccaattttgttccaaacatatgtttaggtgtgtaattatagacacccgaaaagactaaagacagtgcgttaagatattaagagtgaacctctctacatag
caggataataagggtttttatttttctctttatattttgttcttctaaatctgatacagtgatgagtatgtgtaacttttgtaattatAAAAAATAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGACTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAATAAATCaattaggatttttaaaagatgaagcagaatgaagaatgactttggactaggactgactcaggatggagagaattat
cccaagtgcttcaggtgggaacagccaaagggtgtgtgtgggaatgtcctagaattgtgtcatatccagagagggagctgcagggtggggaacagagtgt
atcataatggtcaagacttacgcaaactcagggcgcccacaacaatttccttagctgggacagagggtacaaatcttaactttagttggctttcaaaact
aggcaactgaactgattaaaaaattcaaaactggggcagtgggttcaagtcctggctcttctaataaccagctctgtggctttgggcatgtgtcttaacc
actctgaacctc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 58 529 205 NA intron:DAB1:NM:021080:2/17
0 chr1 98377886 98377887 1000829 0 - Yb8NBC596; RIP_Alu_chr1_098_01 TCCAGGGCCAAGTAGTGAAT CTGCCCCAAATGCTTACACT SINE Alu Yb8 cctaagaagacctcttatctagagattttatcagcataaataaactaaatcttcacacctgtaatgcagctattattcaaattctcatatggatgtccca
aagagtaaaaaagatagcaatattttcatgggaaagtgactattctgtcaggacccactcaaccaaatagaataggtcttataacctccttctacttctt
ttggttttgcacaataataaataaatgcccagtgtgtgctcaatatttaacttatgaattaaaaagtactgagatttacttctttggcatttaagttatt
tttatatccagggccaagtagtgaatacacaatagataagtaggtaccaaatagataattttttagactaccacagctaaggccAAAGAAATATTTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATATTTTTGAataaatgaacatgcttctaaagttaatcttcctatcctaactcctgtgtaatgagtatct
tagctccagagaatgattctgatagtggcagtgtaagcatttggggcaggttagtaagactcttggtggttgctatttccactttaataaaggatgatgt
ttgaatgtaaaacttagtatcaattttggcaccaaagtaccactaaaaaagttgcacccaccattttccaaccctttcagtattgcccatctatgactaa
acattgacaaaagagttgaaactagcatataggacaaatcttacccagttttgcccccatctcctacctgctaactgctctcaacctaccaagaatgaga
cttctttatcctaaatgaatcaac Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 55 543 203 NA intergenic
0 chr1 231931779 231932093 1000830 0 + pAlu1-230192979; Yb8NBC605; RIP_Alu_chr1_230_02 GCCTCTAGGTGGAGCCCTTT GCCCCATTTATGGCTGTTTA SINE Alu Yb8 aggcaagtcaaacagttgtcaaaatccaaaaagcagcttataaccttaaaacatttagcaaacccggcacctgacctgcataatttagccaatctattta
tattttgacaacatctgcttttagccagtaatctttaatactgtttttatttctcaaagattaaagtcacatgaactgaaaggtaccacagctttttatc
ttccctttaaaaaatatttgatctaagcgcttatcttcctttaggtcaattagaggtctttttatagtcatcacacacaacacatatatagctacagaga
caggcagaagaaaacccagtcaccataagatctttcatttgccaatctcctaattggattattggcctctaggtggagccctttAAGAAACAGGGCTGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAACAGGGCTGGCtgggcgcggtggctcacgcttgtaatcccagcactttgggagcactttgggaggcaggtagatcaggag
atcgagatcatcctggctaacacagtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcgtggtggtgggcgccttatgtagtcccagct
actcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgtagtgagccgagatcgcgccactgtactccagcttgggcgacagagcga
gactccgtctcaaaaaaaaaaaaaataagaaacagggctaggaaaacatgcagcttctaaggcctaataaacagccataaatggggcaaaaaacagattt
tgagaggtatctatc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 723 392 NA intergenic
0 chr8 5735596 5735913 1000831 0 + Yb8NBC636; RIP_Alu_chr8_005_01 CCTCTGGCAAGCTGCTTAAT TCACAGCTAGAGGAGACATGAAA SINE Alu Yb8 acaaaaaatattgttattttttaacatctaattttattaaatatctactttgtgttaggttctggtaaatataatagaaatgaatttctactgtttatgt
gttttaaagaaaataaatacattttcttctcatgtatgggctgcttttgattcaagtaagaggaaaatcagtgaggatttcttaaaagccatagatattt
taaagttatatatttttctttccacaacttgtatctctctctttaatgggagagaaattacagtgtgttttagtggtttaaggcatatctcaaaagctag
acacacctgggaaaaaaaaattttgccaaccattattattggtgacctctggcaagctgcttaataaaatcctcaatttctctctctatAAAAATGGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATGGAGAtaataatccttatctgatggagttttaattatcatggaatgatttcaaatctctgtgtgtttactgtactt
agcagactacttatttctgttttcatgtctcctctagctgtgactttttttttcaccatggaagcaaaaatgctcattctgcttttggttttgttttgtt
ttactttactttttttttttttttttttataaacaacagcatttttctaggcacattttccttaattttcaaataaatgacaaccagtcattaaaataac
ttcaatcttcttattaaactgaaaaacagatttaatcttgttatagaatactttcaaatataactcatcatcatcttcatcaccatcctcatccttttaa
tgtataatgagttactat UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 498 169 NA intergenic
0 chr1 187261588 187261906 1000832 0 - Yb8AC998; pAlu1-185461323; RIP_Alu_chr1_185_01 GCAAGTGTCACTTTCTTTGAGC CAACCTGCTATAATCCTGAATAG SINE Alu Yb8 agtattaatgtaatctcttatatatgtatttaaatctcttttattcttggaaatcatcatggttattttggtttattaaatgaatgacatgttaaaaaac
aagccttcatctctctaaaaatgtcatattaatgtactcacataaagaaataatggaatgattaaaaattgacaatttttcttaatgtatttgtatatta
taaaactggtagtctgtgcacctgccaccagtaatctgcaattatccattgcctgaaagtctgcaatatgctttataagccaaaaagtaaagctgttttc
aaaagagaacacaaaatagaatgcaagttgtcactttctttgagcagccatctgtcttagaactacttttctgcaactgaatatAAAAGAAATAGAATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAAATAGAATTGagacaaattgtctattcaggattatagcaggttgttatgattttaaataatgagatagatgtata
aaagtattaactccaactatcatatagaagattgcttaaataatatacatttaaagttattagtaacactttataaaatctttcagtttgatcacagttt
tagagtatagatacactcttacgattagcatgttatctttgcaaattatctgcatatttgtaaaaagccaaatattcaactgcatgaggattggcattgc
aatataaggattgaaagttagatgcgtggtcagaagaatgtcattttcaaataaattgaattgtttgtgtaaggggggcaacaaaggcgaatgagtaagt
ggcatttggtttaaattta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 447 112 NA intergenic
0 chr1 85521223 85521538 1000833 0 - pAlu1-85036899; Yb8AC1025; RIP_Alu_chr1_085_01 GGATCCTAAGCTGGAGCAGA GGATTCCAGTTCAGCCTTGA SINE Alu Yb8 cccccactgcagccagtgtcatgatagcagccactccagaagggccacccacgccatcaccaagattgcaacactgaactccagcctgggcaacagagca
agaccctgtctcaaaaaaaaaaagttattttctggaattatgcttgccatcgaaccccacctggagtttgcaaatatcatcttcctctttctgagacttg
cattagttaacattgccagtcttcagctactctcattgttgcacagtgcccttcatggatcctaagctggagcagatacatcatttgtgaggctcaggat
ataatgattcagagaatgctcaagcatcctagcttctctgaatcattatgtcctgaagcacttagctcagtctacagctagtaattAAGAACACTGGCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAACACTGGCCTtattatcaaggctgaactggaatcccggttctgctacttggtgggagaatgaccttgagcaaatcatgtt
tctaagcctcggatttctcatctctaaagtgaggataataaagcctacctgtaaggactgttataggcattaaattcccaccacagatgtaaagtgcttg
gctcagagtgaatgtgaaataaactgctagtgattatttcttcccagggagttgtaagactgggagatctagcccctcctccaatatccccctgctggca
tataggtatgcaacctccaaacattcaggactcatagcaggtgcctgcctgcactcttcaaaccagtcctctagggggaagacaaagggaatgatccctt
atctctggttccctca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 499 169 NA intergenic
0 chr1 28494040 28494488 1000834 0 + Yb8AC1026; RIP_Alu_chr1_028_01 TTGTCATTGTGGAGTGTTTGC TGCCATTTATATGTCATCATTTCTC SINE Alu Yb8 tacacatcgggtgtggtggtttacatctgcaatcccaactactcaggaagctgaggtgggaaaactgaagctgaccccaggagttccagaaaagcctggg
caatgttgcaggattccatttcaaaaaaattataccgcactttgggaggccgaggcaggtggatcacagtcggaatttgagactagcctgaccaacatgg
agaaaccctgtctctactaaaaatataaaattagccgggtgtggtggcacatgcctgtaatcccagctacttgggaggctgagccaggagaaatcgcttg
aacccaggaggcggaagttgtggtgagccaagatcgtgtcattgcactccagcctgggcaacaacagcgaaactccatctcAAAAAAAAAAAAAAAATTA
TACCACACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACA
AAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGA
GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
TAGCCGGGCGTGGTGGCACATGCCTGTAATCCCAGCCACTCAGGAGGCTGAGGCAGGAGAATAACTTAAACCCAGAAGGCGGAAGTTGCGGTGAGCTGAG
ATTGTGCCATTGCCCTCCAGCCTGGGCAATAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAATTAtacctaaaaaacttacaataagtacatagata
acgtgatcacttcttgagaaatgatgacatataaatggcaatattttctattaacaaatatttgttattattcttattttttgagacagggtctcactcc
accgcccaagctggagtgcagtggcacgatcatggctcactgcagcctcaacctccctagctcaagtgatccgcccaccttggcctcccaaagtgctggg
attacaggcctgagccaccacacctggcctcattgtgtaatcttttgtgtttgtcttcttcgttaccataaagcttttgaagctaattcatgttgtcgtg
tgtatccatagttcattcctttttgttgctgagcacaatactattgtat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 1077 775 NA intergenic
0 chr2 169594483 169594794 1000835 0 - Yb8NBC420; RIP_Alu_chr2_169_02 AAATGCCCAAGTTTCATTGC AACTGCCACAGCGATTCTTT SINE Alu Yb8 tgataacttatttatgagctgttgtttaatagaagttcttttctgtgggcaacctcgtcccctcactgctcacccccctcaccttggttccccctgctgt
gctctgtaacactgtgattgtctctggttgaagcctccatttccctgtctaggagcttctgtttacactccaccccactctagattgcaagccccttgaa
taatttttgtttcctagtaccaagaataatggtgacaaatattaggggatgactcctaaaaatggattaagaagctatttagggggaaaatgcccatttt
gtggttttaaaagatgctacaattgccataaaatgcccaagtttcattgcagaaatcaaatactggagttgtgttttgcttggtcAAGAGGAAAGAACTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGGAAAGAACTGtacatttagagacaaagaatcgctgtggcagttaactttggtgttacattctgttttcttcctaagcaattct
ttagtcctctacctcaacggtgcctctgaagaaaggacttacgtggccaatgggatcaccgtgtatttatttcccttccctatcagccatagccctcagg
gctggaagggcctcattttagtctattcccagactgggtcacccacagtgttgacacacagcatcaaccgacagtgagcttatctggaaaataatgcctt
tctattttctttgtttcttagcatatattaaatgtttctttccttctctaataatcttttagataaagaaatcatttgctgagctgataataacaaaagt
atcctacctaca UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 430 103 NA intron:ABCB11:NM:003742:1/28
0 chr2 224181359 224181578 1000836 0 + Yb8AC726; RIP_Alu_chr2_224_01 TTGACACTGAAGAAAGGACACAG CTGTCGGAAAAGGTCAAGTGTAT SINE Alu Yb8 gggctcccacggattcaccagatgacttttcacagttcacttagcctttgtaggaattttggagtgctttctatatcggcaaaatgaatatatcacttct
ggaggtagggcacttgcatatataatatgatgaggggagctgagaaaagcctccttaacccagaactttctcccccaaatccagccagcctgtctgtatt
ctacatcataggtggtttggggttttttagaatttttggtacagggtccttaggagctccattgtaagggataattcattaatcagttattacctcctta
gcaggaattagcgcacaaatcaaatcatctcactactttgacactgaagaaaggacacaggccctgtatactacaggggcatgattAAAAGCATGTATTG
TCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG
GCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGT
CTCAAAAAAAAAAAAAAAAAAAAAGCATGTATTGgagtcgtgattctcaaagggtggtcccaggttagcaatatcatcaccactcagcaatctgttagca
acacacattttcagaccccacccagaagggttcatttagcataaaaccaaatataaatgtaaatacacttgaccttttccgacagccttcctagagactg
gctcaccagcccattatttgctcccgatatggaaacgctactgatgtttgcaaagaacatctcttcctggctttatagaggtttcaaattgattcttgca
taaatacagatgggtttatctgagtacaaattagctcatagattgctatgattggaaagatatataaaatgtcatccactctaacctggctcattgcttg
catctgctctgtcaaattcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 448 214 NA intergenic
0 chr2 85188882 85189186 1000837 0 + Yb8JW658; RIP_Alu_chr2_085_01 ATAGGTACACGGTTGCAGTTGTC AATGAAAGGATGCATCTCGAAG SINE Alu Yb8 aaaaatcatgaactctttgtatgttaggagtattagtgtgttatgacttgtcaataccttttgacagtttgttaatttcttttaaatattttaggtcttc
ctctctctctctcccttcttctctcatgtttgcaaataatatttacatttatatagtaacagttatcagtcttttctctatagcttctgcttttaaagtt
ataaatgttttcccactcccagtttaaaaagacacattcagtttttcttctagtatttgtgttttcatttttcatatttagatctcttacccatttgcca
tttattctggtatatgagaagaatgaagctgatgttatatttttccatataggtacacggttgcagttgtctcaataccgtttatttAAAAGTTTGGCTC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATTATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAGTTTGGCTCttccccactgcttcgagatgcatcctttcattgatctgtctattcatatatcaacactatactcttttaattacagaaactt
tataacattttaacgtcgtggagggctagcctccctatgtatctctttcttaaagaattattacttgtttattcttttttttttttttttttttttttgg
acacagggtcttgctttgtcacccaggctggagtacagcggcatgatcttgactcaccgcaaccactgcctcccaggttcaaacggtcctcccacttcag
cctcccaaggagctgggactacaggcatgtgccatcctgcccagctaatttttgtatttttgtagagatggggtctcactgtgttgctcaggctagtgtt
tattc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 402 84 NA intergenic
0 chr2 121773319 121774539 1000838 0 - Yb8AC914a; RIP_Alu_chr2_121_01 GATAAATTCCTCTCTGCCCCTAC CGGGTTTTCTGTAAGACAGACATT SINE Alu Yb8 tgggaacaatcctacccagatttcaccactaggttcaacagaatgtaatgagccagtgctgtatccagtgttaaacaggcatggcatgttgcaacaaatg
ctacacaggaccacctaatctgcaaaaaaacttataaccatattttaaagcttcaggaggcaaaactattccaattcaaaacactaagaaacagtcccat
catgaaaaccaaaatcaacttctgagggtaccaaaaggggtacaggacaaatgtgaggaaaatcagcatttgtggagttacaaatacgggttttctgtaa
gacagacattaaagaattcagtgacaaagcttgaaaatacaaaataaaacaaaagtcagtggtcatataattcaaaatttacttcagaaaaggcaaGGCA
GGCCAGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGAAAAAAAAAAAGATTTTAAGTGGGCAactctaactagtaggggcagagaggaatttatccccaccagaattgctagaagggctaaaaaag
caggtccaggcaaagcttccagaaacaacgcactgcttaattgctgtgatgaaccccagaaacactgtctctgctgcctcctataccagcaacagaccac
ctccacccatcctgcttcctcatgttgcttccaaatcaaaacctcctatgggtgcatcttattgacggaagttgggtcactgcctgcaagggaggctggg
aaatgtagcttaccaaattttgaccttaagaaaaagacaggattcacagttttggggagccagcgtatttcactgattctaaaacacacattttccccac
attttcatgtctctgaaatcaggatgcttctg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 58 483 336 NA intergenic
0 chr2 33634805 33635117 1000839 0 - Yb8AC1089; RIP_Alu_chr2_033_01 CCTGGGGAACAACATTCATC TTGCTGGACACTTTATGTGGA SINE Alu Yb8 tcatctttataaaattgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttagggtatgaggatagaaaccagaataaaactaatgactc
actgctgggcaataagatcttgcagtatctttgctgcttgaaagtaaaaatctaagttagaccaaggcaagtgatagagaagcactaatgggaaggtccc
tctgagcactaaacagtggcttccattgagatttgggaagctttttgttcatgcaaaatgaggacgaaatactggaaaacgactggagaaaaaaggcatc
cctggggaacaacattcatctgaaggtattctgtgattaagatgtttctttttgtagttttattatattttttcaaaagctttatAAGATTATTAGAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGATTATTAGAAGAaccatataaactgtccacataaagtgtccagcaacttcttaaacaacagtaatgtatacttgatcatatatg
tacaagtagcaacacattcctaaatgcttagtatacatgcatattgcatttgtcaaatatatttgattcaattgtttataaacttaattaaatgggaaag
atagaggaaagcattcattgaaaaggacaaaattacgttttaagttttctcctcgttttttgtcaccatctatgtgatttagtagagaaaggaatagcta
agtgtgagtgggaagaagtgcctgtgcattagagaaatagtgtgtaggtgtttttctttgaaggaagaagttcttatattcagtattttagctaggcttg
tcccactcagaat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 462 134 NA intron:RASGRP3:NM:170672:16/19
0 chr2 233376631 233376920 1000840 0 - Yb8AC1094; RIP_Alu_chr2_233_01 CTGGTGAAGGAAGAGACAGTGA TCAATGAGTGTCCGTTTGCT SINE Alu Yb8 gtaaatctacatgtacagaatgcatgctgaaaactacgcaacactgatgaaagaaatcaaagatctaacaacacagatagacataccaagttcatgaact
aaaagactaacatggtaaagacatcaagtcttctcaaactgatagagaggtttaacataattcctatcagaatctcagcaagatttttagtaaatacgga
caaaattatcctaaaaatttttatggaaaggcgaaggaaatacaaagctaaaaaaaaatttttttaaaagaagattaaactgggaagaatcagtctaccc
aatttcaagacttattatacagctacagtaatcaagattgtacagtactggtgaaggaagagacagtgatctatgggacaaaattAAGAAGCAGAAATAG
GCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTT
GCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAGCAGA
AATAGaaacagacccacaaagaaatagacccacacaaatatgcttaactaaattttgacaaaggtgaaagaaaacaatttaagagagaaaagacattctt
ggtcccgaagcaaacggacactcattgagaaaacaacaacaaaaaacaactagcttatatgaaaattaatttaaaatggaccatgaacttaaatgtaaat
tataaaaactataaaatttttccacacacacacaaaaaaaaccattggcatctaaagctaggcaaagtgttcttgttaaacttaatacaaaaaagaacaa
cctataaaagaaaaacatttatctattggattaatcaaaatttacacctttttgctctgtgaaagactctattaagagaatgaaatgaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 481 176 NA intron:GIGYF2:NM:001103146:14/29
0 chr3 2286631 2286932 1000841 0 - Yb8NBC405; RIP_Alu_chr3_002_02 GCCCATCCCCTATTATAGCC ACCAAACCCCCATGACACTA SINE Alu Yb8 cccccctccttgtcatcatgtctgtaagcatgtagccacagagcatattaacagatattttaggcaatttgcaaaatctctctgagaatgaaggaaagta
gggccccacaggtcataacaagtactcctgtccattcccacacttaaagccaagtgatgtattaacataaggcaatcccatatatatatataccctctgt
gcctctaactgtctaagaacaacctcattcccccccttccccaatgtacacactttaaactggctatcaggtactaggcttagtacctgggtgacaaaat
aatctgtacaccaaacccccatgacactaatttacctatataacaaacctgtatatatgtcgttgaacctaaaataaaagttaaagTAAATAAATAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAATAAATA
AATAAATAAATAAATAaataaataaataaataaacaaacaaacaaacaaactggctataataggggatgggcggggggtggtggcaactactagtcctga
atgcaaagctctactacaaactatctttccatctacaaaagtcaatgaactactgagtttcatttcatcgttttttataaataagggtagagactctgta
atccatcaggtctcttttctccaaaatgatagttttaatgtaatcgattacatcacggacatagttatacttaatcaatttcagaaccctgacaaagaaa
ggtgtaattctttgcgggacctcattgtatcatggtctcccaaaccattcctaagtgatttcttaaagcaacttgaaaaggtgacatcaaaatcctgaag
ta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 60 463 155 NA intron:CNTN4:NM:175607:1/24
0 chr3 5250622 5250927 1000842 0 + Yb8GK644; RIP_Alu_chr3_005_01 GCCTAGCATGAGCTTCCTTT GCAAGCTTGTCAGAGAATCG SINE Alu Yb8 cagcctagttgattcttaagatgattgcaagcttgtcagagaatcgcagccaggggatccaaacaagttgctcctgagttcctaacacacggcaactgtg
acataatcagtggtgctgttctaagctgcgaagttcgtgggtaatttgctgccctgcagtggataactagcacgaagagttctgggaggtggaaacagac
aaagcctgtattgtgcttctataaaacttactattataaggaaatcattttcccaggccattaaaaactagtcataaatatgatttttcatgaatgaatc
ataatttatttagctattctcctatgattggctatcctgattgccgtctttattttctgtgatgaataatgctaccaagatttgtatataaactgatCCA
GGCCGGGTACGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AATTAGCCAggtgttgtggtgagcacctatagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggaggctgcagtgagca
gtgatcatgccactgcactccagcctgggtgacagagggagactccgtctcaaaaaaaaaaaaaaaaattaattaataaaggaagctcatgctaggccag
gcatggtggctcatgcctgtgattccagcactttgggtggctgaggcaggtggatggcttgaggtcaggcatttgagatcagcctggctaatatggtgaa
actgtgtctctactaaaaatataaaaattagccgggcatggtggcacatgcctgtaatcccagctactcaagaggctgaggcaggagactcacttgagcc
taggag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 870 561 NA intergenic
0 chr3 149111338 149111636 1000843 0 - Yb8AC1133; RIP_Alu_chr3_149_02 GGAATGTGGTATGTGATGAAGGT ATATCCCAGCACACAGTTGAAGT SINE Alu Yb8 gctattctgggtcttttgcagctccatgtaaactttaggattttaaaaaatttcgaacagaggtatttattaggttggttcaaaagtaattgtggttttt
gccattgaaagttatggtaaaacccacaattgcttttgcatcaacataataacatgatcaaagaggtcaaaaatggtttcccccaagaaaacacctataa
gctgaaagctgaatgatggacaggtgctaactagaagaccagaaaaagcaagtttcaaacagagaagtggcatgtgcaaaggtcctgaggtgggaagaaa
catgctggatacaagacttgatgggaaaccattgtgactgccatggcaagaaaagggggaatgtggtatgtgatgaaggtggcatAAGAAAGCACCAGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAA
AGAAAGCACCAGAGctctctcttttttttggtgagagttttgtttttttctcaaataactaacattttctttaaaacttttaaggaattttaatatggac
agagtacttcaactgtgtgctgggatataaattgtagaatatttgttaaatgaatgagattaattataattttgtttttcaaagtaactttaatagtaat
aaaaaataaaaaatatcctaaaggtacaatactggtttgtttaaattgattttagtacattcatacagtacaatgttttgaagttgttaataatgataat
tctgcagaagaatattcattggcgtgaagaattgtcctcaatacagtaaatgaaggcagcctttgacaataaaacctcagactggcatggaatccgtga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 471 157 NA intergenic
0 chr3 96598899 96599212 1000844 0 - Yb8AC1141; pAlu3-96397335; RIP_Alu_chr3_096_01 CTCTGAACAAGTAAGTCAGGTTG AGAACCTCAAGAACCCCACC SINE Alu Yb8 caaaatggaaaaggccctttctcttattttagcttcttgcttttactatcaaggtaagtgatcaaagtcttaatagttaaccatcattttggcttgttgt
tgctataagtgactactctgacacctggcagctcagctctctctccagctgagctgagttcccaacaggtaggtacatacataaggaactaaacaataat
ttagggattaaactacaatatcttgagcaatggcctacagaaatgaatttataaagaaaacagagtaaagttacataatatattaaagaaaaaatatata
aattatcaaactaaatcatttatgatgaaaaattaatatttatacaaatactacagacaaaagctactgacaaatactctgaacAAGTAAGTCAGGTTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTAAGTCAGGTTGGtggggttcttgaggttcttatctgaacaagaataggaaaaggctgtgaactgttgattttcatcgttcac
cacggtttgaaccaaacaggtattattttatgtggaaaggatgaaaaagttcaggtttagctcagagaggtctatagctttgatcagattcaaaaagagg
attcaaaatataatttttaagaactaatgatagatattaataaaatacttttcaaaaattaaaccttcagttatatgtaggtattcatttgctttgtaaa
caaaactttttttccgttttatgcaggtgttttcgcatcttgaaaacatgtttatgtttagtatgcccatctgcctgtccttccgtgatatttttttctg
gatacaaagatcta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 372 44 NA intergenic
0 chr3 98917819 98918127 1000845 0 + Yb8AC1181; RIP_Alu_chr3_098_01 TGATTCAAGATCATGGGCAA AGGCACTGCATAGTCTCCGT SINE Alu Yb8 taataaacattttagtacccctccagtttacttatttcctgtttttcttttgttccctaagttattaagtttgctctgtaagagaagtattagtaaatga
gaagccatttgagttacattcagtcactttgattagcatctttggtaatttttttctctctcataaacatatggtaaagcaacatgtaatgttccaataa
ttgtgatttcaaatctaaagtactatttgttcattcccgaaacctgaagcaaacatctggtggttaatgctttaagaaaaaaagtaccttagtgcattac
ctctgtatatgattcaagatcatgggcaaaaatatgtagatgagatcaagccacaaaagtttaagttgatccattcaattaaaaaaggAAAAAGAAAAGA
TGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAGAcccaggtgcttctgtgtttcctctaatgtaaggaacggagactatgcagtgcctgaaggacttcttcctttctgcctca
tcttgcaattagatataaactgtatcccgtatatatcctcccattggaacaaaagatgtgactgcttccctatccctattccatgtatgctcagaattat
tccagtttgtgcataccatcaggttcatattatcatgcattttgttaattcaaattctatttcctacattaaacttatgtcccattttttcttgttttat
tttaagatttattccagttcatactttccatttaaagacagcagttgttggccaggtgtggtgggcctgtaatcccagcactttgggaggccaaggtggg
tggatcact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 61 466 145 NA intron:EPHA6:NM:001080448:14/18
0 chr3 123621142 123621458 1000846 0 + Yb8AC1197; RIP_Alu_chr3_123_01 GCTTTGGAAGTTTCCTCCCT ATACTGAGGGGCAAGGGAAA SINE Alu Yb8 ctggccaacatggtgaagccccttctcaactaaaaatacaaaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcagggggctgaggca
ggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagattgtgccatcacactctagcctgagggacaagagcgagacttcatctcaaaaaa
aaaaaaaacaacaacaaccctttgtagagacagagtttcactacattgcccgggttgaccaagcaaaatttcttacatggtctcattaacagtttctatt
tctgctgcccttaatctttaccatctaagtgctttggaagtttcctccctacagaaatcaactagatttctttaaatttcccagacatcttAGAAATGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATGAAagtctcttatcttaatatagtttaaaggtgtgtttcccttgcccctcagtattgtaaatatctaaacagatgtg
ttgccacaaatggggcaatttttaaatttaaaaacaattttttttttgtatgtgtgctggaccaaaccgtggcatgggagtgattcccacattaaggaat
gtctcaacatccttcatagcaattcttgactaccaaatccagtctcaatatcaagcattaatagaactatgtatacctagttgcttaagaccattagcca
atgtatgaaaatctagttgggctttataaatatggagtggccacgtaacattatctaaactgggacatttttaaaagtgaaagggggcagtaaaataatt
cacaggtgttagctgat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 447 122 NA intergenic
0 chr3 130667177 130667470 1000847 0 - Yb8AC1202; RIP_Alu_chr3_130_01 AGTCCTCTGCAGCCACAAAT GAGCTCTTTGCTGTGGCTTT SINE Alu Yb8 gctaatggcctttgacagcattagacatgcatggtacagcatgggccaaaaaaaattattcaggaagaagcataataaccttccaaacaaccttctaaat
caagtaggcaaccatctgtaaaatgacattgagctggtaaacaagtaggacctttcgtttaccctcagaggactctgtaaaggatactgatggtttaata
atattataggatatataaagagcatatagggtcaggcacagtggctcacacctgtaatctcagcactttgggaggctgaggtgggtggataacctgaggt
cagaagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccaggtgtggtggcaacAAAAAATTAGCCAGGC
GTGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAA
ACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
TTAGCCAGGCgtggtggcaggcacctgtaatcccagctactcaggaggctgagacaggagaactgcgtgaacccgagaggtggaggttgcagtgagccga
gattgtgccactgcactccaggctgggcaaccgagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaagagcatataattagtttactctcaaagt
cacatggacatagaaagcaaagtgtgtataaaatttaagaaggtaggtgccaattgtttgtgtatctctaggctttagggacgtctgtagacttaatttt
gactttctgacaagggcaaaaaaaggctcatgaaaaagctatttattaacaggtgggcacatattctgcccaaacttggagggaagaactaaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 1175 864 NA intron:IFT122:NM:052985:8/31
0 chr3 134972991 134973299 1000848 0 + Yb8AC1204; RIP_Alu_chr3_134_01 CAAGCAAGAATCAATGGGTG AATTCCAGTGGGCTCTGCTA SINE Alu Yb8 aagcaccaagatattggcttgtaagtactcttctttactaaaaggaaccagaactccttggaaaaatagctgacttcagggctggggcaggaaaaataga
tgctgagcctagaacaacacactgaagtgctcaaacagtgatgggacactcaaagcatacaagaaccaatttgaaggatctcctgttgccaagtctggga
attttgagcattaaaataaataatgatagcagtaagggataatagcccattgaaagaaataagaatgcatgaggcaatactgattaaacaaatgaagaag
ggaaaactaatcaatgtggaaggaatgatagagttagaaaactatcacttggcaaccaatatattgataactgattcaagcAAGAATCAATGGGTGTTAA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAGAATCAATGGGTGTTAActtgtgggtgaacgttggacagccataatattaataaaaacaaacaaaacaaagcaaaacaaacattggcca
gactgagcactccacacctgacccctcagtatcactaagtgctagcagagcccactggaattcaagctgtgaatacttccctgccttctctcatgttcat
tccccaactcctcactttcctgggcaactcatccagaatgaaccggctcagcaccagcccctccaggaagccttcccagatggcataccctgtcctacaa
gaagactcctctgttcatattgccattatgattgaattcaccacactctgtaatacactttggctacagaaactctttgagctctttttcttcatcttat
attcccaga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 59 380 67 NA intron:TF:NM:001063:14/17
0 chr4 178751252 178751557 1000849 0 + Yb8AC1217; RIP_Alu_chr4_178_02 GGCTATTAAAGCATACACTAGGGG TCAGCTGCCAGGTATACATCA SINE Alu Yb8 ctatttctatattttcaaaaaagttaatttgttaatcaaaagattgaacttgttagttactaaacagattgtctctaattgttagacaaagaatatttat
gtgagcaattgacttttagcaatagcaccataaagataaaggcatattaatttaaaccttaatttttatgggtaaggaaaatgatccatagaaattaaat
gaacattgaaagatgatatgacaaaattgttcttttaacctttttgaaatgttcactttttctaaaatgtgcacttttgtacacattattcatctttagc
atctttagtactggatcagtagaaatagtattttttaaattttacatgagtggctattaaagcatacactaggggtctttaaattatAAAACCTAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAACCTAAACAAatgattaatctctcctaacactaaaatattttaaaattgattactacagtgctggtaatgatgtatacctggcagctgacc
gtcaaatcttatgaaggattaaaacataaagtttgcattaaaggtaagatttctatgtatcttataactgtttcatctcagaaaacaatataacaacttc
cttttctaacaaccagtatttcttttttcacaaacataaatctgtgagctattagcaaacactgaattgacattccattgaaaagatacacactgaaatt
tacagtgtaaaatacattttatgtcctctttatggaaaacacaaacacatacctacacatgcacacatacacacactcacactcacatggaactctatca
acatag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 447 128 NA intergenic
0 chr4 98809689 98809993 1000850 0 + Yb8AC1219; RIP_Alu_chr4_098_05 GCTTTGACTTGCATCACCAC TGGCTTCTGTACATGCAGAGTT SINE Alu Yb8 agactagccaaatgtattttaaggatcttttcaaacattctgatggctgagtttatttttattaaggtaatactttacaaactctgacctaattagtctg
caaaaatatatatactcatgtatattttgggactcctaaaggccacctggatgtcgcatggatgttatatgttatagtctcatacccagtatattaaaag
ttaggcatatgtatgaaggaattgactaataatgcttctattgaagacacaatcttgcagaatcaaacatggaggtttagtttggagaataataagaaaa
ccagtaatgtactgacaaaatgtagctttgacttgcatcaccactgatgttctgttctatttttatttttattttaactttttctttGAAAGTTTATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAGAAAGTTTATTGCatcaagtttcagcatgaagtcattataatgctaatgaggttatacatattaaaagagttacagtaaagcaactctgcatgta
cagaagccaaatttaatatataacaaattggatttattcccaatgtgaagggcttctcattatagataattgctctgaaaagcacatttttttattattg
ctatattcctaacaaaggtaaaaaggtatccttttttaaaaaaattgtaagtataatttaaaaaaaaccctatccaagaaaaataaacttcattaaattg
ttgataacattttttgatgagcaataaagtttcaatcttaaggattcaaattagaaattattaacatgtatttcctgtaatggtatatatgcttcacctc
tgtgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 56 479 161 NA intron:C4orf37:NM:174952:10/11
0 chr4 68627375 68627376 1000851 0 + Yb8AC1254; RIP_Alu_chr4_068_02 CAAACCATAGTCCCCCAATG AGAATCAGTCCAATGCCTGC SINE Alu Yb8 tgttttatctgcaaattgtgttgccaagtgaaagtagaaatctgtggttatctgcagaaaggtgggacccaggaggccccagtagtgacctcacatattt
gggtcattcctcaggtttggatcagttctgagtcatgacacttacaatttcactaagcttctctgagcccattttatttccatcactcagggaacaggga
gaaaaggtgatttttgtatctctagcacatctgattaatgtcctttgaaattctgaactgtgtacatatgacactttggggaaggattaggagtcttatt
atattagagtataagaaaatatcaagattcaattcaaactaaaatgtgatattaacaaaccatagtcccccaatgcatcaacctctatttAAAAAATGGC
NNNNNNNNNNAAAAAATGGCatattctggtatagtacaatactggtgtgacctttactaaaagcttacaagtattaattccatactgcatggcaggcatt
ggactgattcttttgtttaaaactcacactaccttaggaggaaaagtatcattctcatcagctccatttgatagatgaagaaactgagactcaggatata
taatcttgtctaaggtggcacaggaagtggtggctctgtaatatgaacccagggaagccatctttagatcttgtgttaagcgcattaagtgactttgaca
accttgaattaattacatatttgaagcagatgttaaagttggtgggagacaggcaggtaggaaggtcatggtgaaagaaacccttaaagaagccctcaaa
ggcatctttt Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 467 136 NA intron:TMPRSS11F:NM:207407:3/10
0 chr4 55693319 55693646 1000852 0 - Yb8AC1257; RIP_Alu_chr4_055_01 GGGTCTGTTTTGGGTGCTTAATA GGGATTTTCCCTGGATTATCTT SINE Alu Yb8 tgaagagaagatctgtggtttgggggttgggtggaaggtaaatattcaatgcggctgggattctgcaggtggggagggcaagatctaattacctgctttg
cattcttccttggtcagccatctcagagtgcctcttctaagtcacttagcttttcatgcatctaggaaaatggaagctattgttatggagaggcagagga
agtcagtggcatcaattcacttagcctcatgccttgaatgagattagtcctcaaaaaaacaaaaaaccaaaaacaaaaagctatttgtatgtgctaggag
gggtctgttttgggtgcttaatactgctctgcttttaagtcctgattccaccacttacagttatgggacattggaaaagttacttaaactttctAAACCT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACTTTCTAAACCTcattttcccatctcccttaaatgggaataattatagtatcttttctattgagttattatgtgcatt
aaataagataatccaaggaaaatacctgacacatagtaactgctccaaaaatctaccccttctttttattgttattgaaaaaagcaaagaatgccctgtt
ttttttttttaccatattcctaattattgatgaaaaaacttcattgattatttacaaagagatataacaactttttttttgggcaagacttttaggaagg
caaagggacatttacttaaattaagaataaatattttttctctttacttcttttctttctaaggaatactaatagtgcttgccacctcatgggatgttat
gaggatgaaatgagaaataaagtactca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 525 202 NA intergenic
0 chr5 102191273 102191506 1000853 0 - Yb8NBC615; RIP_Alu_chr5_102_01 GTCCAAGAGTGGTTTTTAATGC TTCAACCCATGTAGGTATGCTG SINE Alu Yb8 agatcttgggctcattgcaacctccgccttctaggctcaatcaatcctcccacctcagcctcctgagaagctgggaccacagatgcacaccaccacgctt
ggctatttttttttcttttgtatttgtagtagacagagggtctcgccatgttgcccaggctcgtcttgaactccagagctgaagcaatctgctggcctcg
gcctcctaaagtgctgagattataggtatcagccaccgtgcatggccatgaatagaacatttaagaaagaattgagaatagtttcaaaaggaaaaattaa
aataaatatcagctttatactacattaatatttgtttttatgtaaattactcaatgaagtccaagagtggtttttaatgctAAAATCATAGTGAGCTTCA
CCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCT
GAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTC
CGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCATAGTGAGCTTCAaaagatattgtaatttttattttacattccactggaatcctagctat
aaaaaatcacgcctcatgaaaacagacttggaatatttcaaatttatagacattttcttaaagtaagaatattttaacaatattcaataatcatttgtat
tatgaggataaaattaaaaacagaagaaaatattagaatgtatcaggaaggtgtataaaaaaaatactaaaatgttattttattttcctaggatcatagt
ggctcagcatacctacatgggttgaatatcctttatcaagaaaatgtttgggaccagaagggtttcaggttttggatttttttttggattttggaatatg
ttccattatatttagttggccatcactaatctga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 568 315 NA intergenic
0 chr5 61329398 61329710 1000854 0 + Yb8AC771; RIP_Alu_chr5_061_01 GGCAAAGCTATTTGGAAGATGA GAGCCTAGGTTGAATAGCCACTT SINE Alu Yb8 cctggctacacattagaatcacctgggaacttagcttaacagcaacaaaagggcaccctaatgtgtagccaatggttgagaaatgctgatatacaccatc
tcggtagaggtatactattattatactcgttcttcagataagaaaactgagatacacagtctagctatcttgccaaaggtcgcacattaactgcccaagg
tgcagtcttaacccagagcagctgagcagatccaactatttatttaatagatactgctatttgccatcactgtgattaatgaatgaagacagagcctagg
ttgaatagccacttattcaataagtctgtttttaatatatatataaattcccagcccctccaaaaaaggtctttcaacctgtgttttAAAAACAATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
ATAAAATAAAAATAAAAACAATTTTCtatttcttcatcttccaaatagctttgcccagcatatatatttacatatatataaaatatcaaatgtctttttg
catttaatttttaaattgaggtaaaacttacataacataaaattcaccattttaaagtgtataattcggtggcttttagtacattcataatgttgtgcga
ccatcaccacgtcgttttcatccaactgccatatggtgatatcgctcccctaaaatattttcagcaacccaaagcctgaaaactcactgtaaaaattcat
ggtttagaatcttaaaagtaattatggtttcaagaatatctattaacattgtgaaaacttgtatagctatttgctgttagcagatctaatcttaaggaag
cctgtcttttgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 464 138 NA intergenic
0 chr5 25311169 25311477 1000855 0 + Yb8AC1275; RIP_Alu_chr5_025_02 CAACTGCATTTAAACAATTAAGC AAAAGCAAAGGATCTGTGCAA SINE Alu Yb8 tactgtttctccatatactttgtgccttaactgatatacgatgactataaatagaaaagtaggatatggaataaattacatgtttttgtttgtgtttctg
gtctacaatagcaaatctagaaattcatactatgtttattcatatatatgtacatatatacacatgtgcaattgagaaatcaactaagctatgcaaaata
tattcaaaattataaattcttacctaatataataagtgaaagcttttctaataaataatactaggttagaaatatataatatctatttaataagtcacta
gaaagtcaataatttagtctcatatttgactattttaagaaaatatatatttacagattaatattaattaatacaactgcatttAAACAATTAAGCTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAACAATTAAGCTTCTtaatttctcccaaatagtgaataatgaaatgaactattcttttattgcacagatcctttgcttttctaccttgaa
aatactacattgcacactttattaggtaaaaacaaaggttgcatttcagagaagatacattcacaaggacatacacagggcatctccttagtatgcctca
ctgcaaggcacctgtatctcaaaaacaatacctaaatcgaaaattactgtgcattaagaaaacatacacttttagtcactctaaaatcactgtaccctct
agatgatagcaattttcaagattctttttgttgcatttctcaacctgttccttgtaaatgtaatcatcaaaataacaagcatctcttctccttatttgca
gcatgcggt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 417 93 NA intergenic
0 chr5 78313496 78313801 1000856 0 - Yb8AC1282; RIP_Alu_chr5_078_02 AGGAATTGCCTATATTCCGTG AAGCATGACTGCCAAGTTCA SINE Alu Yb8 actgatgctggaagaggttaagaaacttgcccaaggttacagggctagtatatgttggaccaggatttgacccagggcacgtggccctagggttgatgcc
tataaccactaagccatattgcctactcaaaattattaaaaataacatcccaaggactgcttcatacatactaaataatccctgtattacttttggacat
ttgggtcattcctaaatatctcaaggtaaagaatcaacccatcatatttctgagttaggaattgcctatattccatgtaaaataaaaatagattttattt
ctgagtcatttgttatgcataattttagacaataaaatgaaggaattttttgactgtctcaaaatgagttacttgaaggaagttgttAAGAGTCATATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAGTCATATCTatgaacttggcagtcatgctttaagttaatatttacagacccctttcccataattatttaactttagaaaagaaaagcaca
agttgataaacaagcctagactgactggactttatactctcatgaaatcctgagttttagtttttttggtttcagaaattatttattgagtaaagaggac
tggttaggaactgagatgtaggttttggtcttggctggtcagactgtgacctcgctggccatcatttccacatctgtgaaacagaggagttgggctgaac
tctagactttgtctagctctaaattaatttaactctaaggctcttgtgtccattagggcgagtttctaacttggcaaatgcacattatcatacctatcat
actaac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 483 165 NA intron:ARSB:NM:000046:1/8
0 chr5 166083342 166083646 1000857 0 - Yb8AC1283; RIP_Alu_chr5_166_01 TGAGAAGCATTGGTTTAACTGTTG AAGGTCAGACTTACCAGAACATTG SINE Alu Yb8 ttgctgagtcctgcactgtaccacagcggttgaaagaattgattctggagtttgtcctctatgtttatatcttgcttgcaccatttaataactttgtgac
ctaagctaacttactttggttttctcatttgtaaagtggtggtaataaccgctcctgtctcataaggttgttgtaaggataaaaagaaaacaatttatgt
aaagcccttattccttcgtaggaggaataaattggtgtttatagatatatagcatgtatatgtaaaatatttagtattcaacattggtttttagattttt
tatagcacaattttacacattaaaacttgagaagcattggtttaactgttgaagcaaaaatgtttatatgataaataatttttccAAAGAAGTAAACATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAAGTAAACATCacaatgttctggtaagtctgaccttatacataaggcataaactatgtaagtgtactaaataaataattgtactgtagtgc
ctccttatacgcaggtgagtatatcccaagaccccccagtggatgcttgaaactgtggatactactgaacccagttgctgtccatcaaaacgcatttatg
ttcatgtcttcatccataaatttaataacctttctatcttaactaagcacttgtcacgcactgtggctgtaagttttacagtttgaggtgcgacagcaaa
actgggatgagtttcttttccttcttcacagtttctcggatagatttgttcttatcatagatcttagtaaccctttttgacttttttttcctttaagtta
agaac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 418 98 NA intergenic
0 chr5 6577388 6577694 1000858 0 + Yb8AC1290; RIP_Alu_chr5_006_01 AGACCTCCTGTGTGTGGACC CCCAGAGCTCCGTTCTGTAG SINE Alu Yb8 atggtttttctctcctgagcacatgaggatgcctgagcctggctggtcctcctgcccttctcagggagacggatggcgtgttccatctttgctctctgct
acattgtgcatttgggcgcagagacaaattcagaaaggcttctaattatgcaaggaatcgaggtctcatctcctcagcacacttgtttacagcactgagc
cctcctctccctctccctccgccacacactggggctttgtcccctctggaacagacactggtcaacagcctggtgtcatcccacagacctcctgtgtgtg
gaccaaaggtcctcaacatttagggatggtcccctcacagggggtcggccctctgtgtctgaacgtggccaagccacgacccctgatgGAAAGTTACAAG
GAGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAAC
CCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGATGCTGAGGCAGGAGAATGGCGTGAACCT
GGGAAGCGGAGCTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAGTTACAAGgaggccagtgtgaggaagaattttctacagaacggagctctgggagaaggaagaaatcaccctgcggaagaagtgagttcc
ccatcacagtgggtatccaacggctgaacgcccatgagtgaggagtgttgaagaggtctctggatttaagggtaggaggcatgacagagtctatgtcctt
tccaactccagcatcctcatggcctcgataccccagacagagtgaagactatgaggccccaagtcctcaagagggagaggggctgctgcctgcaagggag
aaggatagagccaaggaagcaagcccaggggcccctgggagacactgggcgagattccagggggcagggtctattcccagaaacgagatggattggaacg
gccacag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 479 160 NA intergenic
0 chr5 126970246 126970558 1000859 0 - Yb8AC1330; RIP_Alu_chr5_126_01 TCCCTAACTCACTTGAAAAGCTG TAGTCATCCAAATGCCACCA SINE Alu Yb8 gtaaatatgtatctataatatgtatatgtgttaggatgcactatgaaatgtacttcttaatatgataacagtaaaaaaagtgtgaaagtcactgatttaa
tatttgtactttcataagcaattagcaggcacccattgtaacagataaaatccaattcttagattaactaaaaaaggaacatcactatacatgtgaacta
atttcaagatatgtgttcaaaaatgtttatgtttattaagaaaaatatgtacttgactacaaagaaaattcttctgacttcttgaagtcaaatccctaac
tcacttgaaaagctgaggagtaaaaccaaacaaagacatacacaaaaactcttagttaccttaaataaacttttaaactaggatttAAGATGACTGTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGCGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGATGACTGTCCTttggtggcatttggatgactaatttgaaaggtttttgttaagctgaaatgtagacatatttattaggatttta
aaatcttaaaagaggccttttcagggctcatttcgttatgacaacaaccttgttgagccaccagtgagaggaatgacatctccggcatcttaacgggtga
cgtcaatgatgggtacttgatggaggctgtcctggtcccaacccttgttctggaaccttcagtggctgcctgggtgaaaattctgcaaagtcagactgtg
gagggagagcagcacagaagttctgtggaagtccacaccagcagagtgagattctagcatgggggctgctctaggactgaatggaaaatctaagaacttg
catatgcagattt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 456 129 NA intergenic
0 chr5 32607280 32607281 1000860 0 + Yb8AC1334; RIP_Alu_chr5_032_01 CTGGCTAGAGTGGTTTCCTGA AGTCCCTTGCTCAAAATCACA SINE Alu Yb8 atttctttcactctagtggaatttctatttttgattctagtattctagtacattgtacatgtatctgtcaacagattctaaactccctgaaggagacaaa
ttaccagtggacaagaacacagcctctggagtccaataggcctggtgcattcattagggtaagtggtgctaggtgctataacagataaacctcaaattat
ttgtgacttcacacaatataaccttatttcttcactcatatgaagtcgtttttagtacacattgccatttatggacataggctcttaccttctcatgatt
ctttgctgcttaatctggctagagtggtttcctgatgtacacagtgacaaactcagagagacacagctacttactagattgagctatAAGAAACTGATGA
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACTGATGAcatatgaacataaatactgtctacaaaatggcagtttcacatgattaaacctaacttcacatgtgattttgagcaa
gggactctctaaatccatttctttagctataaaatggggtaccaatactcattccctccaaggagattataaagatcaaataagaggatgtatgcaaaga
acttcgcatacaggctgacacagagtcagtaactcaaacaggttaggtatgatttacccaatgcctagcacagactctctggcacatactagctattctt
taattatatatatgcatgtatgtatgtataaattgagatagaattcacataccataggctgggtgcagtggtgctgtaatcccagcacttcaggaggcca
aggcaggcgga Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 492 168 NA intergenic
0 chr6 54888282 54888593 1000861 0 + Yb8NBC290; RIP_Alu_chr6_054_03 ATTGTGGAGGGAAGTCGTTG GGACTGAAAACCCCTAACTCC SINE Alu Yb8 aaaaaagcatagatagttagatgggtagatgtgtggatggatagatggatgaatggcaggtagattaaaaagtaacacaactttttatcatattgttttg
acttagtctgatggctttctttatacacaaaaatgaaatactacttttgaattttaagttttcttataatgctacagtaattctccatgtaatttaggtc
tctacaccctagagatttctgtctatcctttctctgttgtccgttagaagcaattagccaatgagtcttgtcacatcatcctttacaactttacctccaa
cccttttattcctgctttcgccatccacgttggcatctcatgctagactaggactgaaaacccctaactcctctacctactggtAGAAACTCACATTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACTCACATTTCTaactcatcctatgtatacaaacacgttaattttctcaggtattgttttaatcatgtgattctttgactataa
agttatgaatggttcactgttgtgccttatagaatccatagttagcctagcattcaacgacttccctccacaattgaccaaatttaccattacaatcttt
ctagctttatcgccatctctttcttagtagaattccatttcccaacaaaactgggcctctagctgtttctgctgtagtgctgctttgccgctgaaccttc
ctaaagcttctgctcctattccccaaactcctcttcatgcactattcatgcactattttacaattttccttatgcagagggatttttactccgtcctccc
tctttctctttc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 524 196 NA intron:FAM83B:NM:001010872:2/5
0 chr6 140994597 140994871 1000862 0 + Yb8NBC568; RIP_Alu_chr6_140_01 AAACCCAACAAATGTGCTTC GGCAACCTACACAAAGCATGT SINE Alu Yb8 caggagaattaaagaattcttgtaaacagtaatatcataaaattctgtgtctgcagccttatataattttttcttcctagtattctagattcataaaaaa
acacaaaaagaacaagtgatcctgagttatagtttgtaatcaagttatttcttgtaatggagacactgaagactcagaatttattaaaatgcagtaattt
tattttgataaaacccaacaaatgtgcttctaatagtggtttttcctattgaaggactatacaactcagtgttgtataaatatgatatttaatatagtac
atataagattctatatagtaaatatagaataaaaaatacaaagattgctatagcatgtgatctgtggattactcaaggatagtgattAAGAATAATTAGC
TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC
CGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTG
CGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAATTAGCacacatgctttg
tgtaggttgcctataaaaataaaaattggaagatgtaaattttttcaacaatagaattatactgggaaaaatttgtatgttcttcaataacttagaagaa
ttgttgagctctcctgtagcttttcggcactttgtaaaaatgaaatatcaagaatcaatatttatatttgttaaaaatattaaacaagtcagctttgatt
gaacaacatctcttaaatgtccctgttgccagagagttgaatgagatgaacttataggtgcatgttgtgtattttaccagctctggttttaccaaaaact
tggagacatgaaaaaagtaaaaggaccactacccagcattcagtaaaataaactagaatgtccacaatgtctttt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 501 213 NA intergenic
0 chr6 55369994 55370300 1000863 0 + Yb8AC1354; RIP_Alu_chr6_055_01 TTGGAGGTTTCTTAAATAGATGGT TCCCAGAGTGGGTCAGAAAG SINE Alu Yb8 ttcttaagtggtttattttgcattctaacaagggggaagctttttttttttttttttctggagtcagagtcttggtgttttcacccaggctggagtgtag
tggcttgatcacagctacgtcaatctggaatgcctgggctcaagtgatcctcacacctcagcctccagagaagtttggactacaggtgtgcaccaccatg
cccagctaatctttaaactttttagagatggggtcttgctatgttggccaggctggcttcaaactcctgggctcaagtgatcttcccaacttagccttcc
aaagtgctggttttacaggcatcagccacattggaggtttcttaaatagatggtaatccaatatgcaaattggagactaaaactattttAAAAAAATGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAATGCCttaactgtatttgagttcagactccctgagaatgagttttctaatgacaaaatcctcacttttctagtcttgtgttgggctg
ctgctttctgacccactctgggaggtttactactggtctgaaactccaatctatctctctactgattattgttaacacagtgctcaaatcttggctccca
ataagctgtcttctgaatagcagcagccctaggtggagagataactgaatggaacatttgctaataaagtcatgtacctcgtaaggacattctggtcaat
gacagacagacagactatacatcagtggtcccataagattataataccgtattttttatagtatcttttctatgtttatatgcttaaatatgcaaatatt
taccatt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 493 175 NA intron:GFRAL:NM:207410:6/9
0 chr6 107090330 107090639 1000864 0 - Yb8AC1372; pAlu6-106983670; RIP_Alu_chr6_107_02 GTTTGGCCTGAACCTAACCA TCTTTGTTTCCCAAGCCACT SINE Alu Yb8 actggatacttgaaaaattaaatatgaaggtactgactttgaggttattcacaagagagggggctatgaatgtcaaaggggaaaatgaacctttacaatg
gaaagatggaggaggcaccactttaaccaagcaatcaaacttggtattgctaaagggcaagctagttagcacatgccacctgctgtgatacaacataaat
atatggcactatctatatgaagtatccgtgccaaaactgtttggcctgaacctaaccataccttaagacctaagccctagtagataggaaattcgggcaa
cagaagaacatgctaaatagtagcatgagggaacactcagacaaatctagaatgtggcacactctctaagacagctggcctaaatctttttAAAAGTTAG
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAG
CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGTTAGtggcttgggaaacaaagatggggtattttagagatctttaaaaagagacttaaaagagacagaacaatcaaacgcatttat
gtgaaccttgattggatcctgatttgaaaatgcaaatctataagagacattcctgaagcaattgggaaaatttggtgatggactattgaacagatattat
catggacactttgtgaattttctcaagtgtaataatgatacttatgcaggggaataccattagaaagagagtcaggctgaatcctatgtggaatgaaggg
tcatgatatctccaatgtacattgaagtgctcagaaaaataacacaaatatggtaaaatgataacaattattgggtcaaagtgaatggtacattggtgtt
cactgaacta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 499 179 NA intron:AIM1:NM:001624:6/20
0 chr7 37965042 37965347 1000865 0 - pAlu7-37705191; Yb8NBC412; RIP_Alu_chr7_037_02 CAAAGATGGTTGTTGAGGTTGA CCCAGCAACTTCCCCTTAAT SINE Alu Yb8 gctggcaatctaacaaaggtgatattgaaatagttttattttaagctcatatcattcaaaatcagctttagagaaatgttttaacgtattccccagtctt
ttcttcacttagtcaacatgacttctataagtaatgcacaaatagcatgcaaccagtaaataaaatcatagttgaaaattattatcaattatcctcccaa
gtcaagtgcatttgatgtggacttctgtcttctaatctatgagatgggcataataacaatagtagctaattcaaagatggttgttgaggttgaataaaat
aatcagtataaaactctggagagaatgtgacacaaaacaagtgctcactgatgtagattgaggttgatactactgttattttctctatcttAAAAATGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAATGTTatgtgcaaaatgccagggttcatgagagatgtatttattaaggggaagttgctggggtttttttttaaactacatgtatattata
cttgacgttgcctgagcatggctagaggtgggtgcatgtttctgcacacgaatgtgagcaatgaggaacagacagagataccttagggaatggtttagct
gacgggtccagcagagcccactgagggcactgcctttgtaggcctccaggaccctgctctaatccatagcagattcatacagtcatacaggtttgatttt
gttggtccatggagggttgatcaggatctcagggggaaagaagccagaggtagaagacatctaatattttgagtgctgattgcctgcaaagctgtgtgct
acacac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 500 185 NA intergenic
0 chr7 44928934 44929243 1000866 0 - Yb8NBC418; RIP_Alu_chr7_044_01 TGGCCGTCAAAGACATAGTG TACGGGAATAAGGGCAAGG SINE Alu Yb8 gagccacattataataaaagtaaaaagtgttgaaagcaggccccccaaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagc
actgtaacatgttcataatggccctaatgcccatgctggaaggttgtgggtttacgggaataagggcaaggaacacctggcccgcccagggcggaaaact
gcttaaaggcattcttaagccacaaacaatagcatgagcgatctgtgccttaaggacatgctgctgttgcagttaactagcccaacctattcctttaatt
tggcccatcccttcgtttcccataagggatacttttagttaatttaatatctatagaaacaatgctaatgactggtttgctgttAATAAATATGTGGGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAATAAATATGTGGGTAaatctctgttcggggctctcagctctgaaggctgtgagacccctgatttcccactttacacctctatatttctg
tgtgtgtgtctttaattcctctagcaccactaggttagggtctccccgacccagctggtctcggtaaaaaagaaacaggtgaaattgattgtaatcatat
tttatttaaaatggttgatctaaaacattataatttcaatgtatcatcaatatgaaaatgatcgatactacattttacattgtgtgcactatgtctttga
cggccagtgtactctttacacttactgtacttctccagtggactcgctgcacttcaagtgctcagagcacgtgtgggtgccagagtggacagcatagagc
ttcggaggcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 854 528 NA intergenic
0 chr7 57368849 57369159 1000867 0 + Yb8NBC620; RIP_Alu_chr7_057_01 TCACTTTCCCCAAGTCAAGG CTCATAGACTAAATTTGCCATCCTG SINE Alu Yb8 tgaggcaggaggatcacttgagcctggtggggtggaggttgtagtgagccaagaatgcaccactgcactccagcctgggtagtgggagagaaatcatgtc
tcaaaaaaaaatatatagaatcactttccccaagtcaaggcctcgttttctttgagggagttgtaaaaagttttaaccaaatttttcaattattttatta
ttattttttgagatggattattcctgtgtcacccaggctggagttcacccaggctggagtgcagtggcacaatcccggctcactacaacttccacctccc
agattcaagccattctcctgcctcatcctcctgagtagctgggattagaggcacccagcaccacgcccggctaatttttgtatttttAATAGAGATTGGG
GCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAATAGAGATTGGGtttcgccatgttggccaggctggtctcgaccgcctgacctcaggtgatccacctgacttggccaccgaaagtgttg
ggattacaggtgtgagccaccacaccctacctcagatttatatatcaggatggcaaatttagtctatgagtttatcatttatttcatcctcagatttaaa
ctgttgaacccaaaatgtagagatgaatctctaaattcaactgttttatttggcaagaaggacttgtcatttggggcatacacacagaccaggtggcctt
caatatgtccaaagaacaaactggagattggaggttttgtgtgtgtttgtttgtttgttttgtttttttgctttgttttgttttgttttgatggagtctc
actctgtcgcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 750 426 NA intergenic
0 chr7 37443816 37444129 1000868 0 + Yb8AC877; pAlu7-37184419; RIP_Alu_chr7_037_03 TGACCTAGGTAACTGCTCCTAAA CCCGTCTGTATTTTAACAGTTGG SINE Alu Yb8 ccctcaaagtaaaaaaaaattaataatacaataaaacagtaaaatctcaggttagttcaaatggaactggggatacacattagaagagctttcatttgag
gaccctaaattgctaacttcagtcattacatcagttattttaattcacagtcaatcataactcatccccgtctgtattttaacagttggtacttctcctg
tactggtttaagtttcatttttaattaacaaatagtaatcattcatatttatgaggtacaattggacgtattgatacatgtatacctaaggaatgatcaa
atcaggctaatgaacatatctatcacttcaaatatttagcattcctttgtggtgggaacatttaaaatcccctcttttagctgttttGAAATATACAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAGAAATATACAATAtataattattaactattgccaccatgctgtgtaataaaatcaccagaacttattcctcctgtctgactgaaac
tttctatctgggtttgaccaacatctcctctttccctgccaaccccacctttcctcttgttttcttgaagaaaagacatataaagcaaactaattctagt
caagactttaggagcagttacctaggtcacttgaagaaaattaaatacaaaatgcatctctttttatgatttcagcaagatagtttaataaagaacctga
atagaaactactgaatcgggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggaggatcacgaggtcaggagatcgaga
ccatcctggctaac UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 763 436 NA intron:ELMO1:NM:014800:1/22
0 chr7 42571163 42571490 1000869 0 - Yb8AC931; pAlu7-42311324; RIP_Alu_chr7_042_02 TCCATTCGAAAAGCCTACTGAT GTCTACCTGAAGCAAAAGTAAATCC SINE Alu Yb8 caatttcagaatgaaaagctgtatgtgaatggccaagaggctgagcaggtctttggcaaatacaatgaggtagaaagacaaaagttgcagtttagagacc
aggaaagaaagaccctggtaaaaatgccagcttttcacttactatcctaaaggctacatcttagaagtaatggtaaaatggaaagaagagtcctcacaag
gactgaaaccaaatttgagtcttctaagtttctaatagattaatataatgtgactctagtttagttgtctacctgaagcaaaagtaaatcctattattct
taatggaacatcatataacaccttaaaactccattctattttctacaacacaatgtctatacacaaacaaaaataatcaggcatacAAGAAGATAATAAT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCAGAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGATAATAATtaatcaaagcacagcagaaaaacatacaatagaaataaatcagtaggaaatttgattt
tgataaatgatatttgatttatcagacatgaacatttaaataactatgcacatatactgtgtgaaatggtaaactgaatatactcattgcccaaaattga
taaatagattgaaaaacataccaatcaaaatatcagtaggcttttcgaatggaaattcataaaatacataaaatatgtatggaaatgcaaaggatctagt
atagtcaaaataattttgaaaaagaaaaaatattggagtatttatactacataaacagaatagagtatggaaatatacctatactttgtggccacactta
tttgacaatgtgccaaagaaactcaata UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 687 346 NA intergenic
0 chr7 70205014 70205324 1000870 0 + Yb8AC1384; RIP_Alu_chr7_070_01 CCAAGCAAGAAGACTGGGAG TGTGATTTCATCCTCCACCA SINE Alu Yb8 actgcactcaagcctgggagacagagtgagactctgtctcagaaaaaaaaaaaaaaggatactatattaccactaaactatgttcattccaggaatgcaa
ggatagttgaaggttcaaagttgaccaatgcagttatcccaacagcttctgttggattaatgacaacatctctgctgcctggctcagtgtgtgcccacac
agctggctaactagttacctgtcttccccaggtggttttttcacagcctgatggattcttcttgcccactgcctcccaccacaaaaacaatgagaacacc
aggtattgcagcaattaaagagtttaataattgcagtgccagccaagcaagaagactgggagaaattttcttaaatccatctcctcAAGAATTTGGAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAGAATTTGGAGGCtagggttttataagggcactttggcaggcagggggctgggacactgaaacaactgattggtggaggatgaaatca
cagggtgtctaacatcgtctttacacaattgagtcagttgccaggaggacacctcaggaccaggtggcttcgcttggtctgctgaaatgctaaatctgaa
aaataactgtaaagaccagttcaataggtttcacagtagtgatgttatctacggaagtacttggggaagttataaatcttttttttttttgagagagaga
gtcttgctctgtcacccaggctggagtgtggtggcacaatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctccca
agtagctggga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 460 135 NA intergenic
0 chr7 3781727 3782033 1000871 0 - Yb8AC1402; RIP_Alu_chr7_003_01 TGGTCACAAACAACTGTGGG TTGAAGGCTGTTTCCCAGAC SINE Alu Yb8 tctatgattgtcctttgcacaccaaattgacaatgtctgcttacaagtttctctcttctgaagacagacagctcctccaaagcaaatgctactcattcgt
tcattaacttacactcagtcatgtattcattcaacagatagttactgatcacacagcatacatgagttgctatcatatttctgactccagtgtctggcac
tttgatgcgtggtaggtgatgaatgaagaatcctgtggacaatgcagggtgggaaatacgttacacgtgattaggatcacagttagggactggtggaaga
ttcactcgtttcgagaatcagtgcaaatactggtcacaaacaactgtgggaaagacagtcaagactttatcaaataattttttcatttAAAGAGGTACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGGAGTGAGCCGAGATTACGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAA
GAAAAAAAAAGAGGTACTAataaataaaaatgttatgaaaggctgatttagaaacatcagtgtgaatgaccagtcaagcacatatgtgtcagagctggag
atacatctggtctgggaaacagccttcaaatagaaaaaaaaaaataaaataaaaaaaaaggctttctttgaaagttgagaaggcaacaaaacaaagccac
aatctgctacaggtaaaatgtaaagtattaggttgaaccataggcagttgccactattccattgcttttgacttacaaaatgacaattacatatggtcca
acttaatagaaaccaagagggccaaaatagtgaagaaagactattaggagctcaaaaaccaaacaccttaaactatttctaagcttctaatttgaacttt
atttact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 500 181 NA intron:SDK1:NM:152744:4/45
0 chr8 137786012 137786322 1000872 0 + Yb8JW649; pAlu8-137401126; RIP_Alu_chr8_137_01 TTTCTTAGATGTCTGGGAGTGCT ATACTTTGGGTTGGAGCTTCTTG SINE Alu Yb8 cagtggcttgagttatttaaaaaaaaaatatggatcgtgcactcattcacttgtttatacatttgttttcttagccagtccttggaaaagggtaagaaat
aaaatctgatgaaaaggtgttgaaaacttaaaaacagccttgttactaaaagtagcattttgattgtgaaatgcacttcatatatacatatctcagtttc
tttatctgacaaatggtgatacaaaaatgtattaatgagaaaattctaatttttatggagaactccaggcctctttcatcttatttgggagaggagaaaa
aaaatcatagttaagattcaaggaaaaggacaaaaacttatgcatagcatactttgggttggagcttcttgatctagtaaagataGAAATGAATAATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAAATGAATAATTCCttttttattaatagtgagattaatggaataagagaagcctaaggctggccttccctttggaaaggagcactccc
agacatctaagaaatgtccagatgggagccataatatggctaaaatgaagtaagactcgtgattttaggagataaagatgcctgtcacaatttattttta
ttttttttgtggactcttcttgctattagagttccctttttagtgtataatttaaagatatatatgagaaaaatatcagttaatcattgtaatataaatc
acaatttggggctgctgttatgtaaaatatatcatttagaaagagcccttgataattccttctccagctaaacaaagtctacctttgcagatttaaccac
atttgctcttt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 466 140 NA intergenic
0 chr8 76037864 76038186 1000873 0 + Yb8AC963a; RIP_Alu_chr8_076_02 TCTCCTGGTGTAGTCAATTCAGA CTGCTTAGTATCCCAAACCACTG SINE Alu Yb8 atcccaaaccactgaattttatcttgagtatttaatagttaatcaatatggcatcctcattataatagcaaggaacaaggaaaggaaagtaatttataat
aaaactgcatttctgaggccgggcgcggtggctcacgcctgtaatcccaacactttggaaggccgaggcgggcggattacgagatcaggagatcgagacc
acggtgaaaccccaactctactaaaaatacaaaaaaatcatccgggcgtggtggcgggtggctgtagtcccagctactcgggaggctgaggcaggagaat
agcgtgaacccgggaggcggagcttgcagtgaagcgagatcgcgccactgcactccagcctgggagacagagcaagactccgtcttaaaaCACACAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTACAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAACAAAAAAAACCAAAAAAAACCACACAAACAaacaaacaacaaaaaaactgcatttctgtcagttaatactctgaattgactacaccaggagaaaaaa
tgaagtgtttcgatgattgttgaacatatttataataaaacatttgggatgaagagaataacaacaattagaagaaaagtgaaagtgtcagaaaaagtat
taacaaagcaaagtaatttgtatgtaataagagaaaaatgaaaataattggggtaagactattgttccaagaaaattaatagctgctgaaggggagaaac
aaggaagtataatattcttgcaaatatactggactttattttcaaatttaagcatcaaattcttgacattatgttacgagacaagcttttgatagcaaat
atttttgtctaaaatcacaccat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 804 471 NA intergenic
0 chr8 76039504 76039819 1000874 0 - Yb8AC963b; RIP_Alu_chr8_076_03 GACATCTTAGGATGGAGGGAAAT CCTATACAAATTCTAGGTCAGACAG SINE Alu Yb8 aaatcgttactttttttctgttactttttaatcttgacaaagaaacctgtcaagattaaacattctacaaaaaaacagttttaaagttggcaaaaaatat
atatggcacttttaagatttttaatgaaaaatttgaaaattgtaagcacactgagtggagtattttgaaaaatctcattaaaagaagaaagttctagttg
acaattatagaacagcacaaataacaaattgtagtgagccccatactgctggagaaaatttaatattataataatccaagacattattaggacatcttag
gatggagggaaatacaaattatataatttctgtgcctctgttatgatattttgttcaatatttgatattatatagatttttgatttaattAAGAAACAGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAACAGAattaatatgtgaaattgtttgacaaaggtttttatgtattaaaatatatcaatagtttcttttaaatgtgtaat
gatatgcagattttcttaaagtgaagaaaattaccactggtttatcaataaagttgttactttaaaaatgtctgtctgacctagaatttgtataggtttt
tttagaaaattagatgtgataaatttataaatattggatagtaaataatatgttctcatgtggaggctattaaaaaatatgatctttgtacttaaagatc
catatgaacttaaataggaggttaggatattaattaatttgaaatagagttggaacatactagccaacttttacagaaagtgttaatcgagctaaaagat
acccttgagagcaaag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 606 280 NA intergenic
0 chr8 52530069 52530244 1000875 0 + Yb8AC1415; RIP_Alu_chr8_052_01 CAACATGCCTCGGAAAGAAT AAACACATTTGCCCACACAA SINE Alu Yb8 ataggagtttctcttttctgggaatctcaagcaaaaattaaatatttgctaaggtgttaaaaatgcctaatgattgattctaagtttggggaagggggat
caaccattcctgagatgaacatattctggaaagtggaaataaattaaattaatccaattcaacaataaatgtttaatttaattcctaacaatatcgaatg
tcttaagtatattagtaacatactggatgttggaaagatacagagatgaacaaacacactcctccttgtgtgctcctactctagctgcatgaacagagga
cagaacacatcatctgtaaaaccacaacatgcctcggaaagaattgtctcagagttaggtgtaaatgtgataggagaacattctggcAAGAGGTAAGGGA
AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAG
CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAGGTAAGGGAaagtataggga
aagttattataataattgaaataaatgttccgaggtaagtcagtggcagtagaactggaaaaggagataatctgatgcatgcatggaactaaatttttag
agaattgtggaagaaggagtagcactagagggtgaatcagaggttactggaggagagtaatgataccaatagagatagcaaacacaggatgctgtgggtt
tgtgtgggcaaatgtgtttgacagatgtaaagatttacatgtgaagataaaaacaaagtcctggcaatgtccattgaaatctcaggaaggatctcagcaa
taaagactataaattttacatgaagtatgaaagctgaaggtttgggaagagctcagatggaagaggaaaaaaatgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 495 306 NA intron:PXDNL:NM:144651:9/23
0 chr8 69580239 69580543 1000876 0 + Yb8AC1432; RIP_Alu_chr8_069_01 CAGTAGCTGGTGGGTTTGGT TTCTCAGCCAGTCATGTTGC SINE Alu Yb8 ggtgatctgcctgccttggcctcccaaagtgcatggtgagccaccatgcctagccccaaattgattttcacaggggttgtgccactttacattcccacca
gcaagtatggagggttccaatttcttcacatcttggccatcatttgttatggtttgtctttgaaattatagccatcttcatgagagtgaagtagtatttc
attgtactttttatttacatttttaaatgactaattatgtcgataatgtattattgaatattagatcattattacttgaattttgtatcattctttcatt
cactcaaagaatgccagtagctggtgggtttggtggtaagaagttgaacaaattctcttttgattgctttcattttctcactgAAAGAATGAGCAACATG
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAA
AAAAAAAAGAATGAGCAACATGactggctgagaatcaggcaagggagaggtattgaagttaactgaggaataaaaatatatctgaaccaaaactgaaaaa
ctgaactagttggaattcaattaatctagcaaatatatatttttttactttcaaaagttgttatgactgtatcatgcatcaaaatatataaagaataata
taatgaacacctaggtaactaccatgtagctaaaaataactcatcagtgaaaccaacctctattgcatggtagccaactccatctctattctgaatttta
actttaaccccttggagtgtttttgttttttttgtttttggttttgttatgttactacacacacatacacacacacacacatgcacatgcacacacacac
actca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA NA 420 98 NA intron:C8orf34:NM:052958:4/13
0 chr8 106250587 106250899 1000877 0 + Yb8AC1440; RIP_Alu_chr8_106_01 AAACAACCCAGGCTGAAATG AAAAACCCACTGATTGGCTG SINE Alu Yb8 atttaaaaacctaaaagtgttttcaagtttcacttatccttaattcataaatttgctttttttcttataaaatttatagccatataaccaactatatctc
ttattttgggggagaaataaaaatgaagccgagagataacttttccactaaattataacagttgtatagaatttcatgaccaggttaaaaatctaacaag
tctggctccagagacttttacctaaatcatttatgaaaacaacccaggctgaaatgagttagcagatgcaacaaaaattatagtactctcaaaaccagga
gaaaactaaacaatttaaaataaattattattttaaatatttttaaatgattgaagatacataagagggaatagaaatcttaacgAAAGAATATGATACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAATATGATACCacaaaaaatactagacagacttcaaacaaataaggtagaacatctgaaagtaaaatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatataaaattaaaatagaaaatgcaatggactgcttaagtgatagccaggcacagctaaaca
gggggtgagaaaatggggagacagatctcagaaaaagtcctaaaatgcaaccaagagcaataagaggttggacacatgaaaaacagttaagtgacgtgga
caataaaatgaaaatattaagcattcatctaagtttgtgtgtgtgagaatagagagggaagaaatatctttgggaaaaaatagcagcaaatatccagaac
tgaaaaagacatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA NA 980 652 NA intergenic
0 chr9 76713833 76714180 1000878 0 + Yb8NBC627; RIP_Alu_chr9_074_01 ATTCACCATGAATTGCCAAG TTTCTTTGATGAGGGGAAGTG SINE Alu Yb8 aaaaaaaaaactcacccaggacagaggaatggcagatttattgtatttagataaatttctgtctagcatcctgtgaataggagcttgagatgatattgta
aatacatggcttctcttaggacataccgtggcgttccacgccaccaatagggtgaagtggattgtgcatttcctgccaagcagccaatgagagtcaaaac
tgggtctaaaatactgtgctgtaaaaagaacttaagagctagttgtcagttgtgtttattatgctataaacttttaaacatcactttcctgatcgccctt
agattgctagtttagaagtagattgatgattcagagttcttatcatccttcctgagatattcaccatgaattgccaagttatttttaagaaatcaATGTG
TGGCAGGTGCGGTGGCTCATGCCTGTATTCCCAGCACTTTGGGGCACTTTGGGAGGCCAATGCAGGCAAATCACTTGAGGCCAGAAGTTCAAGACTATCC
TGGCCAACATGGTGAAACCCCGTCTCAACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCA
GGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGCTGGGCATGGTGGTATGTGcctttaatcccaactactcaggaggctgagacatgagaatcgcttga
acctggaaagcggaggttgcagtgagctgagatcacgccactgcactccagcctgtgcaatagagcaagattctgtccccccctcaaaaaaaaaaaaaag
aagaagaaaaagaaaaaaatcaatggatctttctttccctacctcacttcccctcatcaaagaaaacaaattttaactattctagtgttgtaaaactatt
ctaagtaattcagctagttcctctctctacacccacatactgcttttgtctgtaaaatacaacaagtgttctgggtcagtttccaatgttctatgcagtg
cctaaaatggtgggcactagaaggagaaactgagtgatatgactgact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 58 607 254 NA intergenic
0 chr9 41028344 41028654 1000879 0 - Yb8AC1472; RIP_Alu_chr9_040_01 TGAACTCTTTATTGGTTGCCA CATTCAAGGAAACAATGGGG SINE Alu Yb8 ggataattttgttcacaaatatagatgcaaaattctatgctgcgttaaagctattttaaagagcatattttaggactagtgtttatttccttgtgtctaa
atttcctgttttgcatttgcttcagctaagattgttttgggctaaacttatcttcctacacagacccttgatagcatgtaaatcaaaataatcataggca
tatttaattatatgacatttgttgtctctacactaaagtttttctaacattcttaaattttgtctacataatgaatatatttttaacagaaaaaaaaact
ataggtttgattgcctgcttatttaaataaaaagagaaagaagagatagaagaactatgaactctttattggttgccaaacaatAAAAATACCTTTTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAA
AAAAAAAAAAAAAAAATACCTTTTTGGgaaaaaagtaaaccccattgtttccttgaatgtgcttgttctttcagctcagtcctaagagtggatgattact
gagcacagggccctgagatgaactgagggactcgcatctcattcaagcctcacaaagcagtggaaggattaacgttttcttcattttataaagagcacac
tgagactaagaatggttgattagtttgcccaagttctcaagagtagtaaaattttgagccgttaatttaaaacagaccatctggaggtagactagagctg
agaatgatctcaattaaaggaaggaattctgtcactttgtgaagttttatgaagagataagatagaaaccaacctactgagtattaaacaaaaggctatt
tcccgaaaaca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 412 81 NA intergenic
0 chr9 70892982 70893286 1000880 0 - Yb8AC1483; RIP_Alu_chr9_068_01 TCTGGAAGAAGCAGGACTCA CTAGCTCTCCGCAATCCATC SINE Alu Yb8 gtaataaagtacacaattcttatacaacctacataagcaagcactacatttaaggtagcgccttcctcctcttgttttctgaggatgccctactctgtaa
ttgagtagcctctaattaactatcttaacttcattatactctgcgacttaccctgaattctttcccaggcaagatccaagaacactcttggggtctggaa
caagaccccctttctggcgtcaggactgggcaccagatctggaagaagcaggactcaggccgggtgcgttggctcatgcctgtaatcccaacactttggg
aggccaaggcgggcggatcacctgaggtcaggagttcaagaccagcccagccaacatggcgaaaccccgtctctactaaaaatatAAAAATTAGTCGCCG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAATTAGTCGCCGggtgcggtggctcatgcctgtaatcccagcactttggaaggccgaggcggccggatcacgaggtcaggagatagagacca
tcctggctaacattgtgaaaccccgtctctactaaaaatacaaaaaaattagccagtcatgatggtgggtacctgtagtcccagctacccaggagcctga
ggcaggagaatcactggaacccagaaggcagaggctgaagtgagccgagatcgtgccactgcaatccagcctgggcaacagaacaagactctgagaagaa
gaaggagaaggagaaggagaagaagaagaagaaggactctgcaggtggcacacaaaattagatgaaaagaataaggggaccttaaagggggaagaaaaaa
atggg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 988 668 NA intergenic
0 chr10 13298029 13298326 1000881 0 - Yb8AC1519; RIP_Alu_chr10_013_01 GCCACGATAATATGGAAAGTGC AGCAGTTGAGGGATTTGTCC SINE Alu Yb8 gcaaacaaaggtgaacatttttctagataatgtctcattagtttagacactctaataatacttttgagtctcaaataacacactagtgagtctggatcat
ttagtgtgtaaacccccaagttaaagacttgcagaattaaaaatgatgatcccattcctccgaggcaccgaggtctggagtactaacttacgattttatt
aggtcatgttctaaattgtaatttttcatgcactcagtacggaacagaagggcactgaggggcaagatactctatatttatgttttgtgttatattcctc
tgtcctttaaacattttaaaccatgtgtattcaaactatttttaattacaaaagccacgataatatggaaagtgccaaaactttttAAAAAGTGTTAGTA
TAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCACAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAGTGTTAGTAcattgtaagatcacagagtatatcaaaaccatcagttgtagactagaatattcatatttaacaaatttgcttatggacaaatccctca
actgctagagacagaacttttaaactaaagtgatttacacaattagaatggtatcctgaaatcattactgaaaaaatagtgtagcatgtcctttagaaag
tcactacagatgtggccggggtgtggtggctcacacctgtaatcccaacactctgggggccgaggcaggtggatcacctgaggtcgggagttccagacca
gtctgactaacacggtgaaacacagtctctactaaaaacacaaaaattagctgggagtgtcagtgggtgtctgtaatcccagctactcgggaggctga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 453 141 NA intergenic
0 chr10 63413635 63413800 1000882 0 - Yb8AC1529; RIP_Alu_chr10_063_01 GAGCCCAGGGGATGAATAAT CTTCTGCATGAACCCAGTCA SINE Alu Yb8 caggaagagtaacctaagtctccttatgtagatatgcaaggataatgtctatgctttcctcatgcagtcagcgaacctttatttggttcctactcagtgc
caaatgctgtgttcagcagtgggtttacatgggtgaacatgacagcacctgctctcagggagctcccagtcctatcctccattgatggagaaaacagatg
agactccagaccaaggaggagttggtggctcccaaagaaacagtggagcccaggggatgaataattaaaacgtaaagcacatcccagagctcagcacttt
gaaggtgtttatgtcccagctctgaaaaagatgttctgtatttcatctctgagtctgagattttaaaagctatggttggtacaacagtAAGAACAAAAGG
GGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCC
GCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAAAAGGgggtttaaaaaatataatttgg
attatgactgggttcatgcagaagaaaaatggatacatcaagtacatagtctaccatttaaatatttcctttttcattttttttttttctggcacttggc
ttgccacaacttccatggggcaagtgcttcatacgcaggtcagcagccgagatctctctcaataatgaacgatattactaatataaaatttgcctcaact
gaacttcaaacctgatgtgatttttttttcctcaggtgggatgtggacagagaacatctatataataggtgttatcattcaggaggcctagactgaacca
atactttgcagctaaatgtaatttgcgaagcacaatttaacagctccatttagcgacttttcacaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 379 201 NA intron:ARID5B:NM:032199:3/10
0 chr10 70668131 70668437 1000883 0 - Yb8AC1531; RIP_Alu_chr10_070_01 TGCAAAGTGGAAATGTCACC GTTTTGTGGACCTGGCAAAC SINE Alu Yb8 ccttaaacttttttgtccacgaaagtaggacaccctgggagaagatttcaggtccagtttgaatgaaagacgtgctgagatgtgcaactgagccgcagaa
acttcatgcctacgtgcatcccccatggccttctcttctctaagctgaatcaccccaatttttttaaaacattgcttctgcagccttttctaataattta
aaggactattactctcatctgagtggtttgaaatatatggtagcagaaggagtaattattgaaaagttagagctcttggattcatgagacattagacaag
tcgtttaacctctctgagcctcagtctactcctctgcaaagtggaaatgtcacctccctacctctctcaaaggaatgctctaatGAAAATACCTGGTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAAATACCTGGTGTAttatacatgcagaatgcatggtttgccaggtccacaaaacagaactaacatggtgtaaccttgcaggattgtctcag
gaacttcatttcaacttagaaaaatgattcccaaccaggcagagtggcccgtacctgtagtcccagctacttgggagcctgaggcaggtggatcacttga
ggccaggagttccaggcctgcctgggcaacatagcgagacctcgtctcttaataaagagaaagaaagaaaaatggttctcaatttgcattaccaatcatt
gcttacaaatggtgtttcctgagtttcgtgtctgaaatcgcaaataatcatagaatgtttcagactggaagagaacttggaagttaaaagagaatcgccc
aagtcgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 429 106 NA intron:HKDC1:NM:025130:4/18
0 chr11 88188747 88189383 1000884 0 + Yb8NBC409; RIP_Alu_chr11_088_01 TCAAAACTTGCGGATTTTCC TGCTGAGCTATACTGGTGCAA SINE Alu Yb8 ggcccataattttgatgtatagaaggttcaagattggtcatctgcatctggtcagagtctcaggctgatttcacttattgtggaaaataacagaagggaa
gcttgtatgtgcagagatcacaaggtgatagaggaaacaaagaaagaggggaggtgttagcctctttttaacaaccactgcttgtgggaactaacagagt
gagaactcactcatctctgacagtgggcattaatctattcatgaggaatcggttcccatacccacatacctgtcattaggccccacctccaacattgaaa
tcaaatttcaacattaaatgtttgggggacaagcatgcaaaccagagaaaaaggtcacaaatcagaggcttcagcccctgccttAAGAAATTGGAAACAG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAGAAATTGGAAACAGGCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTCTGGGAGGCCTAGGCAGGTGGATCATGAGATTAGGAAT
TTGAGACCAGCCTGGCCAACATAGTGAAGCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACATGGTGGCACGTGCCTGTAGTCCCAGCTACTCAGG
AGGCTAAGGCAGGAGAATTACTTGAACCTGGGAGGCAGAGGTTGTGGTGAGCCGAGATCATGCCACTGCACTCCAGCGTGGGCAACAGAGCAAGACTCCA
TCTCAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAGAAATTGGAAACAGaacaaatgaagataaaaataagcagaaaatagcaaataaaaatcaaagca
aaaaatcaatgaaagagaacacagaaaaacaatttaaaaaatcagtgaatcaaaaaagctagttatttgagaaaaatcaataaaactgataaatctctat
ccagattggtccaaaaaaaaaaaaaaaaggaaagaaaaggcacgaataaccaatatgagtttttagagaagttatattgctacaaattatataatattaa
atggatcataaaaaaacagtgtaaacaattttatgcccacaattttgacaatttaaataaaatagaaaagttccttcataattaattctggaagaaacag
ataactctaacagatctatctatctgtctgtcgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 61 731 406 NA intron:GRM5:NM:001143831:2/9
0 chr11 6837936 6838542 1000885 0 - Yb8NBC622; RIP_Alu_chr11_006_01 TCAAAACTTGCGGATTTTCC TGCTGAGCTATACTGGTGCAA SINE Alu Yb8 gctgcatatatgtcttcttttgaaaagtgtctgttcatattctttgcccactttttaatggcattctttggtttttactcataaatttgtttacattcct
tatagatgccggatattagacctttatcagatgcctaatttccaaatattttcttccattctataggaagtctgtttactctgttcatacttttgctaat
gcagcacattttacttgcaaaataatgtaaaaaaaatattgatttcattaataggagactgattcaaaacttgcggattttccgtagattacaatggaat
acaatgtaactggggatatgcattaatatttatgtaaaaacttaatatggacacataacacccaaatatttctttctaatacagtcttccattagaAGGA
GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGAattccc
ctgcacaaactctctctctttgcctgctgctatccatgtaagacgtgacttgctcttccttgccttctgcctgattgtgaggcttctccagccatgtgga
attgtaagtccaattaaacctctttcttttgtatattgcccagtctcaggaatgtctttatcagcagtgtgaacatgaactaatacagtaaatttgcacc
agtatagctcagcattgctgaaaaatacctgaaaatatggaagtgacttcgaactgggtaacaggcagaggttgaaacagtttggagggctcggaagaag
gcaggaaaatgtgggaaactttggaacttcctagagacttgctgaatgaccttgacaaaaatgctgatagtgatatgaacaataaagtcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 60 451 357 NA intergenic
0 chr11 58219021 58219323 1000886 0 + Yb8AC1551; RIP_Alu_chr11_058_01 TTTGGGGAATCCTAATGCAA TGCTGCTAAGATGAAGCAAAA SINE Alu Yb8 gacatcagtcttctcaggaccttggattggaacttacaccattggctttccttgtttggctttcctgtttccagcttgctaactgcagatcttggaaatt
ttcggcttccatagttacatgagccaattctttattatgaatctatacatacctacatctatatctttatgatgatataaataaagacatagatgtaggt
atgtatagatttataataaagaattatctttcttctattgctttttttcctttggggaatcctaatgcaatagataactggttgaataaattctggcaca
tacttatgatgggatataaaaagaaaaggaaatgagaaatatgtttactgttaagacatatttcagggatatatgtttcaggaacAAAACAAGTACAGAG
GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAACAAGTACAGAGcagtgtgtatattttgcttcatcttagcagcatattaaaaagtggaaggataaaccaaaactcataaaaatgcttaatatag
ggggagggagaataaggataaaagcgataggtataagtgctagatttctttggctataacttgtcttatagatttgactttgaaacaatataaatgtttt
tcttaaatataaaataaaattagatgagatattaatgggtataaaaataccattagaaagaagaagatctagtgttcagaggcacaatagggtaactata
gttaacaacaattcattgtatattttaaaacacataagaaaagtagaactcggatgttcctaacacaaagaaatgataaatggttgaggtgatggatatc
cca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 50 500 182 NA intergenic
0 chr11 19339351 19339352 1000887 0 + Yb8AC1583; RIP_Alu_chr11_019_02 ATTGGAACCCAAGTCCACTG CCTGGTGTATTTTGTTGGTGC SINE Alu Yb8 actgcccctgtcctcgcaaagctcagtccaatggagcaaacaggcatcaagtggatacttaaataaatgtctacttaggtcccacaaactggcagatgga
atataccagagaagatggagttcttgacaatggaaaacaggaagcataatgatgaggtggaaaaaactgtgacaactggagtgatctgagtttcaatcct
ggcctcagaaagtcctgggaaaaagtccagaaatcttgggaaaattttgtaacctcgctaaactggcttagatactataaaatgaggatggcaatagttt
ctgccttgtagggttgtattaggttagataaaatgagtaaagtacttcgcacaacacctggtgtattttgttggtgctgactaaaAGTGAGCTCTTTTTT
NNNNNNNNNNAGTGAGCTCTTTTTTatgtctctcagcctctgctaagcattttgttattgaggttttagtgggtctactttgggactaccatttcttgtc
catagaaatctgagaaaaagtcacactttacagtggacttgggttccaatcccagcatgtcacctctcgagtgacaggcatgactgggtgtcacatctta
tccttgggtatcagtttgctcctggactggtgtgagattcattgacttcttggtctatctagccttttgtgggcatttggtatctaggttgcttttgggg
atggggggatccttctgcacagaaggtaggccaaagttccgggctctaaagtgtcttcctccctggatgccatccacagtcctgaggtcactacatgaag
cccagggagc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 500 169 NA intron:NAV2:NM:001111018:1/38
0 chr12 126068592 126068805 1000888 0 + pAlu12-127226481; Yb8AC737b; RIP_Alu_chr12_126_02 AAGCTTGCAGTAAATGACAGAGG GTACTACCCCAACTCACTCATGG SINE Alu Yb8 tcagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaagtaccactgttacatggtaacaatttctctttgaggggtatcaaaagtgctgggcatcatcag
aagcaagatttgttgttaactggttgagggggattctccgtctttctccactgaataatctcaccacgagaaacttagtgcttctctttcttgttttttg
gggcagtgtatctggctgtagtaggagtgcggggtttccctaatgcttcatcttgtataaccgaacaacattaccaagacagtattttttatgcagcaat
cacaaggaatttcccaataaagcttgcagtaaatgacagaggaactctgctctacgatgactccagaaggaggctgcttgtgggtcAAGAACCCAGCTGC
CCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACC
CGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAACCCAGCTGCactttgagctgcaatcattccttccttcctttattccaaagactagccaatggctgagctcccaacaacctg
caccacggagatcaggatctcggaagggcagggaagtgtgggtgcagccatgagtgagttggggtagtaccaggagaagaggccttcaggttcagggcga
tcattacattctgtaagatctgtgctgtcagggagagcaggctccagctactccacctttttcattttagtgatacagaaactgagtccctgagatgaac
aatgaattaatcaaggtaatggagtttattttcaaagaattcagaatgattttcaaaaacaattcagatcatgttgctcctctcctcaaagtcttccaat
tgcttcttaactcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 451 223 NA intergenic
0 chr12 60022808 60023066 1000889 0 + Yb8AC1613; RIP_Alu_chr12_060_01 CCTTCCTTGCTTTTTGACCA AAGCCTTGCCTTGTGCTTTA SINE Alu Yb8 tcccccttccttgctttttgaccacacagactatcattaagatttctttccagttttcaggacaagaacgactctcattttggcgttggtaaaatgactt
acaaagacttacaacgtgtaattgcttataagtttttcagcttgaatgtttggtcttggccagtcagccaatcgttactcaaccttgaaagattcaaaga
acttcattaaggagtttctgcttttgttataaagaaaagagggctaggtgtggtggcttatgcctgtaatcccagtgctttggaaggccgaggtgggagg
atcacttgagcccaagagtttgaggttatagtgagctatgatcatgtcactgcactgcagcctgagtgacaaagcaataccttgtcttAAAAAAAATTAG
AGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCG
CGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC
TGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATTAGatcatactctttttgccaaaatataaaat
aataaaaataattaaagaaaatagggctaatctattttacaggcatggatcacagtaaatatgcttatcatttttttatcatgaaatatgctgagaattt
acataaatagcctttataaaatatgaagaacatttattataggacagctgaaggatttggaatgttaactacagaataaagcacaaggcaaggcttttcc
aataaatgccttaggaatctcagtggttcacggctaattatcattatttcatttaggagaggtcaggtatcttacaattgtgatataggtactaccataa
tggtcactgagtaatatttatgtgaagttactgaaggagctctcacctttgtagaaata UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 892 621 NA intergenic
0 chr12 10594769 10595081 1000890 0 + Yb8AC1617; RIP_Alu_chr12_010_03 CATTCGGGTCTACTGCGTCT GTGTGACAGAGCCCTGACCT SINE Alu Yb8 ggcaatcagtgtgtgaataggtaataaggctgactggaaaacaaactagtcagacgaggagaggatttcaaatggagatcaagtcacataacactattgc
tttcactcttactttcctcttctcataatcttccaaaagtaaactctggagaaaaacatcagaggatttttcaaatcaaacaaggagtcgaataatacat
tattttgacaagagttatgtgaatagaaaccccaaaataaagatcttacaaagcctaaaacatatccaaatttataccttctttagatcattcgggtcta
ctgcgtctcagtgaattaggagtgataagtgcatattccacaggagataccttcttgtcattctcttctgagaaataaagtgaaacAAAGATTGAGCCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGATTGAGCCTCatcacaatagtgcgtagagatcagaggtcagggctctgtcacacaggacggcctggagtttgtcgtaagccag
tgaagtagacggtggtggctggcaggttcatcacccagttatcctagcgcctcacaatcttcacaaaggcacccatgctgccagtgaagcgcgtcctggc
ggcacagcggataccatttggagacaggtgcaggggctccaggacaccactgcggcacaggaggccctgccccgtggctcggagggaggagggcgattcg
gcttaggagaggtccagagtctggagtgaggcttcagtcccagcagggcgctgagagcgcaggcggaccttcaccacgtccaggggtgtcctggagatgg
aggtgacggctgc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 483 156 NA intergenic
0 chr12 29464688 29465019 1000891 0 - Yb8AC1635; pAlu12-29473598; RIP_Alu_chr12_029_01 AAAGTTTATGCTCCCGCTGA AGAGCTGGAAGGAAAAAGCA SINE Alu Yb8 ggacagaaatacaaatgtgctgccagccatgcttggagagcctaggttggttggtagctgtgctgcatctgcaatgtcatggccctggctagttagtctg
cagcacccagacaacattattatagaggctccctggccacaaaacagtgggtcctggcagcagtgcattctaactttaggtctgtgcctgtgcctgtggt
gcagggtctctgagactgcttgttcaagggctcacaatgggtgtacccatctgctctccctatgtcacaagaaacattaaagtttatgctcccgctgata
tagtcttcaccttgcaaatcaatgaacatattaggtgaatgaaactttctgtccttcaacaatacacataccactaatagtttttcattttAAAAGCTGC
TTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC
AAGGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTGCtttttccttccagctctttttaaaataagtgactaacaatgctgccctctctttcctca
tctataaaatggagataatgatgtcttaacatgtgtgcatcagcttctgaacatatcacctagagcactggagttgctaaacggtgggtctccttcctcc
ttgctctcctctactgactgatcatcatacctgctcccaaaataaatatagaaagttctgaaaaattttaaagaatgctcttggaaagaaaattttttct
ttgatttcatctgaatcttgtttccatgtgatattgagacattatctgaaaattccttcctcagtttaaaggttgctcagtactaaaattctgatatttc
taatattggtctcccagaagtagtgagatggt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 480 139 NA intergenic
0 chr13 109610510 109610807 1000892 0 + Yb8NBC437; RIP_Alu_chr13_109_01 GGCGGTGATGGTAAAACAAC CTTCCCCAAGGAGCCTTTTA SINE Alu Yb8 atttggccctaagtaggaaagaaatcctatcacatgctataatatagatgaaccctgaggacattatgctgagtgaaacaggccagtgacaaaaggaaaa
atactgtatgattccacttacatgaggtgtctacgggggtcaaattcacagggacagaaagtagaatggggggtcaccagaggctggcaggagggatgtg
gagtcagtgtttaacagggacagagtttgagtttgggaaaataaaaaagttcaggagacggatggcggtgatggtaaaacaacactgcaaatgtacttaa
tgccactacactgtgcactgaaaaattattaagatggtaaatgttatgttatgtccattttaccaaaattaaaaataacttttAAAAAAATTCATAGGGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATTCATAGGGGcagggatgattcagaaaacaatgtcttaaaaggctccttggggaagctgttactttttaaaaagaaagattgagcaacactgttc
caacgcttgctgaagaatcgagtggcatcaccttgctcacaggaggaaaggcaaccaccacagtgagtcaggcaaaatataaattatctctgcaagcctg
gcattatctcaccatggttttgcaccacaattttaaaagagaatagctgactcttttttctttttgagacaggttctcactctgttgctcaggcaggagt
gcagtggtgtggtctcagttcactacagcctcaacatcccaggcttaagtgatcctcccacctcagcctccctcgtagctgggaccacaggctcacac UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 498 183 NA intron:COL4A1:NM:001845:49/52
0 chr13 69357073 69357373 1000893 0 - Yb8NBC450b; RIP_Alu_chr13_069_01 TGAAATCTATCTCGTAGGAAGGCTA CCGCTGGTTACCAAAAGATT SINE Alu Yb8 aggagtttgctaacatatgcaagcaatgtaagaaactcaatgggaattgatattttctcttttagcaataacacataatgatgttaaaacaactaatttc
cagaacctacattgtaggtaccataaacaaagtatcattaaaatgaggcttgatggaaaaataaaacagcaaggagaacttgagaaattcaatgaagtgt
aaagaaaaaaaaaaaataacacctacataataatacgtaggtaagtgtgaaagatctgataccagctcctgaggtcccatttccttatagcagtttgtac
aaacaacgccgctggttaccaaaagatttagtgtaacttataaaaatacaaaattattggaatattatttaagttagatgcagagatAAAAAGAAAAGAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGCGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAGAAAAGAAaaagtgctgtagtggtattaaaactattatcagagctgtctgaaaaagaaatcaaactataaaagtctatagccttcctacgagat
agatttcaatttgactctaagttttctggaggccaaataaaaagagaaatctgatcaatttcataatttacaacatccatgataaaagcaaaccaattta
ttcaggagaagtgcaattattcttgctactaaaacctgaaagaaacttctcccaagggtcaccataaagaggacactataaaatataatgaaatatgcct
tgaacagtatctttatgacagataccactaggagtttcatagagctgttttttatgacatccctcactatattttgatggcctagctatagagttctgtg
t UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 61 500 186 NA intron:KLHL1:NM:020866:4/11
0 chr13 106722551 106722862 1000894 0 - pAlu13-106761081; Yb8NBC463; RIP_Alu_chr13_106_01 GCCAGTGCTTGGGTTTTAGA CTGGCAATGAATTTCCCTTT SINE Alu Yb8 ttattctcatttttatattgtagtttatacacgtatatgtgtatatgactccgactttccttagttttaacaaatgtgttgacattttgaggcaacgcac
gatttacaccctttgttttcttgcctgaaagttttctcaaggcttttgatgattttgagagtctgtgaaatgaatactacctttggatggctgaaaatat
attttgatactcatttatactttctgatgatcctacaaagtcattacatgaactgtatcacacaaaacaggaactattaagcaaactgacttcactacag
ttatgaaatgaacagaattttataaggaatcatataaatgtaagtgaagagatagctccaaaaaatactggcaatgaatttccctttttAAAAAATTCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTCTAaggtctgcttattttgtcagcaaacatgttaattttatatacgtaccagtgtgtatacatttgtgtgcatatattat
atacatgtacaaatatgatattgagacattcatgtctttgcatgtactttatgcttattttattagccttcaaatgaagtacactttctctctaaaaccc
aagcactggcttaggaagttggagacccgcctgaatgtgagtcctgaggtctcatgattattcttacttataacatatagagagttatgtgctcatatta
attcatttgtcagaaagttcctcgacaaagcatagtttgccatgaagcttaggtttgaaattggagtgtgagatatttgtatatataaatatataaatat
atatatatatat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 56 543 220 NA intron:FAM155A:NM:001080396:1/3
0 chr13 94049135 94049442 1000895 0 - Yb8NBC564; RIP_Alu_chr13_094_01 TCTGAGACACATGGATTACTTGC TGAGGAACCACCTCCTACCA SINE Alu Yb8 tcacgcccggccatgtactttcattttcaataaatccctgctttcgttctttcgttgcttcattcttttgttgcttcattcttgccttgctttgctgtgc
attttgtccaattctttgttcaaaatgccaagaaactggacaacttgcagtcaagaccctccactggtaacaaaagtaggagctcaaaattatttcatga
ataaatgtatataaattattttcatttaacaacaagcttctataacatataaggaagttctcataacagacctcatcatttagaaaaaaaaaatattgag
gaaccacctcctaccatatacacagcattttcagtatttctggctgaccaggaatatgctggaagtattaatattttcggattttttAAAAAAAAACTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAACTGCaaggattctttattatgcaagtaatccatgtgtctcagaaaaaaattcacagtcaaaagtatataaagtgggctgggcg
cagtggctcacgtctgtaatcccagcactttgggaagtgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaact
catctctactaaaaatacaaaaactagccaggtgtggtagcatgcgcctgtaatcccagctacttggaggctgagatgggagaatcgcttgaacctggga
agcagaggttgcagtgagtcaagattgtggcactgcactccaggctgggcaacagagcgagactgtctcaaaaaaacaaaagtatataaagtaaaaatta
aactcccc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 58 464 143 NA intergenic
0 chr13 97519252 97519557 1000896 0 - Yb8NBC570; pAlu13-97557786; RIP_Alu_chr13_097_02 CAGGTGTTGTGGAAGGGAAT ACGAGGTGATGGCAAGAGAG SINE Alu Yb8 ctaaaaatacaaaattagccgcgcttggtgcccgtaatcctagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcggt
gagccgagatcgcgccattgcactccagcctgggcgacagacagagcgagactttgtctcaaaaaataaaaaataaatttaaaaaaaggcttcacaagaa
ttaaggcccttgaagagtgagaaggaggtccgttttcacactgctgataaaaacatatctgagactgggtaatttataaagaaaaagaggtttagtggac
tcacagttccacgtggctggggaagcctcataatcatgacagaaagcgaagacacacctcacgaggtgatggcaagagagactcagAATCAAGCAGAAGG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAATCAAGCAGAAGGggtttctctttataaaagaagatggtctcgcgagacttattcactaccacgagaacagtatgggggaaccgcccccatga
ttcaattatctgccactgattcccttccacaacacctgggaattaccggagctacaattcaagatgagatttctgtggggacacagccaaaccatatcag
aatgagaaagcaattcaaggcagagagtaaaacctgtgcatagctatggaatcctaaatattctgacgtcatcaaggaactgcaggatgccccgcgttcc
tgaagaacagggtgcatggtgggagggcaggtgctggcaagtccgtgtggagtgggcacggcaaacacccagcaggtagcggagtgtggactctgttctc
ttccct UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 478 158 NA intergenic
0 chr13 24168563 24168883 1000897 0 + pAlu13-24200462; Yb8AC1674; RIP_Alu_chr13_024_01 CTGAAGCTCCATCTCCCAAG GAACTCACACAGCCCCTCTC SINE Alu Yb8 agaaaccacatctcttacgtaaaaccaaagtgaaaatagagtgcgcaacagtcctaaaagactgttttaggatgagtattattatactaataatactagt
gataataggagctattctgtgctaatttccacaagtattaaattattcattcgcacgacaacactgtggggtggctagaggatgaggaggttgaggtgcc
gcgcatcagtgcacagtgtgaagatggggttagatgatgcctccatcagcagcaggacttggagccctgctgaagctccatctcccaaggtaaaggcatg
cccagttgcaaaagggagaaaaagcaggttccatgaggcctcatgtacaagttggaggagaaagtggctacacagagtgggactAGAAAGGGGAGAGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAGGGGAGAGGGGctgtgtgagttcctgctgaagaggtcggaggtgctgtctggatgctgttagggtcattttata
tctacacatgagcggtgctcagcctcaccagggctttagatgtcatggccttggaaggagacgtctctgcgggaaggaaataaaatggaaagcctgtgtc
ttattgattagaatggtgatgccccaaacacactggtctgttaagacatttgaaacagtttacggcaaattggaaaatgttttataaagttttatataaa
gatgaatgtatttaatttaaaagattatcctttgtagccaccatgattaagggcagggactctggagcctgctagcctgggctcaaatcccagctcagcc
accagatagccacctattgct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 480 143 NA intron:ATP12A:NM:001676:11/23
0 chr13 77492166 77492475 1000898 0 + Yb8AC1675; RIP_Alu_chr13_077_01 TTTCAAGATGTCATGGGCTG TGACATTTGCTTTTCCAGCA SINE Alu Yb8 taatgatgcaaacagtgccagactctttgcattgatcagatcacctctggaatattgttttaagttctaggtgccttaaagcatatggatatatattcat
attagattgctaagagttgaagtcatgtcatagagaaaacaaacaaagaatgtttgctggggtgagggtggggtagcattatagctatctttaaatatta
aatgattttccaagtggaatgtgaccaaggactggtatacaagatataaggttagggtgaatgaatgataactaagccagagcatattttttttaacatg
aggaagatatttttaacagacagcgctctttcaagatgtcatgggctgcctcattaggaggcaagtgtttagctctaaaggcattcAAGAAGATGCTGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAAGATGCTGGAaaagcaaatgtcagaaaagaaatgtcagaaacaaatacaagttatctcattcctgagaaaactataactttcctgg
tagatccacaactttggatagggatggtgaaaggtgccaataattttgcagatggtctcaaaggcagcaaaggcagatctgcttttatgggtgtttttaa
gctgttcagtctacttaatttgctactgtaaatgttttgcatatttaaaaattgggcttaaatttttttaaaaataactttggctcaccctaatgaataa
ctcccagaattaaaaaattgaatagcaaaaacaaagtagttgttgcagagaaccatagtcgtgggaaccatagttgtccttgcttttatttattagtcac
ataacctttg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 409 85 NA intergenic
0 chr15 59752053 59752166 1000899 0 + Yb8AC734; RIP_Alu_chr15_059_01 CAAATGTAATTCCAGTGGGTTG GGCTCACAAAGCATGATGAATA SINE Alu Yb8 aactccacctcacccctttcaactaacttttacaaataaaacagcgctgtcatacctggttaactgtttatattctcatatcatatcacaggtaagataa
attctgaatgaattagttgactaaaaaaaaaaacagaaaaattaaaagaataaaagtgaatatttatgagaatccttaagatgatatgaggtactatgct
ataaaatgaagaatgtgttacaaagtaaaagatcaacaaatacaactacctgaagacctaaagtgttatatagctaaagcatagtgtagaataaagcaaa
taacaggctcacaaagcatgatgaataaagcattggatgaatagtataattatataaagaactcacaaaattattttaaagcattaatAATATCCCAATA
GAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATATCCCAATAaatatgtagataaagggcatgaaaggatagttcatgaaagagagtatactacagtattagtaaatatttataaa
aatattcaattcacttaaagaaatagaaattgaaattattcacctgattttgataaaaaaactgataatacccattattgatacagcttcaggaaaattg
atattcttaatattgctagtggccataaaattattacaatatatttgtaaagcaatttagcactcttaatcaaaagctatcaaaatatttttaattcagt
aatgacacttctgggaatctagcctaagaaaataatctgatgcctggaaaaatactgatgcatgaagatgtccaattcagtattataactgcaaagacat
gaaactatacacaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 653 527 NA intergenic
0 chr15 32534281 32534594 1000900 0 + Yb8AC1691; RIP_Alu_chr15_032_01 CCTCAGTTGACGGGGACTAA AAAATCTGCTTGAGGCTGGA SINE Alu Yb8 gctttttcttcccttattcttttcactaagacctcagcctaatgttgaatagaaatggtgagaaaagacatccttaccttgttctcaaccttaggggtac
tcatcagtctttcacaatttagtattgtatttactgtaggttttgtcaacttgaaagtgttccttatctttctgatttgctaagatctttataaccataa
ctaacaaatgttgaattttatcaagtgcatttctgcatgtattgagatcctccaggtgctgggatgtcagtgctcctgttgcagggccaggcaacaagat
ttgtatgtgttttcacacaaaaagctgaatctaagctgcctacataggcccaggaataaatgcagcaccctcagttgacggggactaaAAAATTCCTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGCTCAGGAGATCGAGACCATCCTGGCTAACAAAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTCCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAATTCCTCCTctccagttggagacgtgacaaggaatctcggttctgctctgattctgcacaccgagcacataatccagcctcaa
gcagattttgaactctaatctgaaatacaatcataataatagagttcctgatttcagacattaacatcgaagttgtttttgagttcattatagaatcaaa
ggctaaaatattctgaagagacatttctgccatacaggccacatgctatctttaattgagaataatggaagctaactctcctaaactcttcttactgtat
tgaaatttaagtagactatatgatagagcatatattttttcattcattcaacaaatatttattgaatgtgtctgttaggggtccaggcatttttcaggct
ctgatatgatgaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 441 115 NA intergenic
0 chr12 127498209 127498494 1000901 0 - Yb8AC1695; RIP_Alu_chr12_127_01 TTCAGAAATGGGAGAATGCG GTTTGGCCTTCATAAGCGAG SINE Alu Yb8 gacctcagacaaatgagtgagcccggccaagagcagaagacctgcccagcggagcacagcacaaatgacagacacggaattgcaaggtaaagaaatagtt
gttgctctaagtcatgtggttttcggagtggtttgttaggcaaaaagctgcataacagttcagtagctatatcattagggttcaaatcccagctccacca
actactagttatgtgattttgaaacagtgatgtaaccttcaatgcctcccaccaattttcaccagtgacaacaacaacaaaaaaaattgtcttactttta
ccacatctaacattcagcaggttatttgtttcagaaatgggagaatgcggtgggatcgttttaggaattatattactatgcttttctAAAAAGCACTTGA
CCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGC
CGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACTTGAa
ataatatcatacgtctaggagtgtggtgactctgactcttactcgcttatgaaggccaaacgttaaatgagaaattcagtgagccagttggcaatttgaa
attaatcatagtgggagtatttacacctgagaaatgggcaaatgctatgcataagggtttctattttcccctccctgaagagcaggttgttaaatattga
ccagaaaacctctgtatgccttccttatatactaatcaaggcaacaggtatagccttttctttcataaacatttgttttagaacctcagcatccatttcc
ttccctgatggcaccaaattattttcagggaattacctcttgcctgttgtataacgtcttgataagacagtaattttaagggaccg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 434 133 NA intron:TMEM132C:NM:001136103:1/8
0 chr15 56700158 56700458 1000902 0 - Yb8AC1703; pAlu15-56491897; RIP_Alu_chr15_056_01 TGGTGAATGTTAACAAAAGGACA TGCCAAGTTAGAAAAGTAAATGGA SINE Alu Yb8 tttgcttttatctgttgtttgttttctttttctgaagtagtgttggttactgctctgttattggcagattgaactacttttttttttttttttttttttt
tttttgagacagggtctcgctctgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacttccacctcccgggctcaattgatcctccca
cctcagccccctgagtagctgggactataggcatgtgctaccacacccagctaatttttgtatttttttttagagacagagttacgccatttgcccaggc
ttgtttggactacttttaatagtaatttgtgtggtgaatgttaacaaaaggacatactcaaaggacatactaaaaagaatcctAAAAAATACATATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAATACATATTCTTtagttacttattgtgaaaatgtaactatcttccatattttaaaaatcttaactttaaatatttagttaatgtggaatccatt
tacttttctaacttggcaagttataactatttcacttgtcaaatttactttggtagcagtgtaagcaattgtttgcacaatactttttttttttttgaga
tggagtctcagaaaaacctgtcacccaggctggagtgcagtggcatgatttcagctcactgcaacctctgcctcccaggttcaagcaattatcctgcctc
agcctcctgaatagctgggactacaggtgtgtgcctccatgcctggctagttttttgtatttttagtagagttggggtttcactatgttggccaagttgg
t UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 487 169 NA intron:ADAM10:NM:001110:11/16
0 chr15 65321534 65321853 1000903 0 + Yb8AC1707; RIP_Alu_chr15_065_01 TCATTAACCAGCAAGCGAAA TATTTGACAGAGCAGCACCC SINE Alu Yb8 agtaaatattcatttccttcttcccatctcactttttttcacatttgtgacagcactcctgactagaggtaggttacagatgcactgaggagttagtaag
atacattacaatcaggaaataaccatctcctttaagctgctctagccttgcccttccaccccagaccaccccctaaaataaagttgaaatttttcttttc
cactgctaaggcatatgctgagacagaagagaaggcaattaggaaaattataggaggcagcagagtctgacgtcagctgaaaggaaaagtagctattatg
aaagaaaagaactgagcaaaatatgacttaggaaaaattcaaaacctagagttttcattaaccagcaagcgaaaagacagacttttAAAAATCATATCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATCATATCGGattcatactgttgcaagcaattacaatttcttacccacaacttcatgagaatgtcatacaaggtgg
gtgctgctctgtcaaatattttgcagtagttgtgaaaaggttagtccctaaatactgaaagtagattatactgctccagtggaaagggactttgtagcat
ggtagtatttaaaggttaaaactgtgcaacattagagttgactttacagacaaatgtcaggaaactcatatctgagattccctgtgtaatcataccccag
tcttctggtgcaagtttatgcagtatttgttgcagtttatatgacaggtcgatcactggagtagtatggacttgctgaggtaagagtcactggagtagca
tagacttgctgagggaagag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 56 465 131 NA intron:FLJ11506:NM:024666:1/10
0 chr16 15822993 15823311 1000904 0 + Yb8AC1737; RIP_Alu_chr16_015_01 GTGCTTAGTGGGACCTCAGC CCTGCCATTACCTCCAAAGA SINE Alu Yb8 atactatctacagtgaaactttggtctctgttttaagtgatctttttctggaacgaattatcttcagatagtaaaaatttccttcatttcatgccattta
gttcagttagtgtaatgaaaggtcacgtaacaaaatgttaatggtgatgagttttggatgatagaatcataggtgccagcaagttctcttttacttaaat
atatgtttaagtttttctagaatgaatatacaatattaaagactttttcaagttacaaataaattttttcagagcactgtagaaatgcttacccatctgt
cgctccccctccttctcctttgctaacagaattttctttctttttggtatttagattaaaatgtgcttagtgggacctcagctccagaaaagaaCCAGGA
ATTGCTGGGTATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAGACAGATACCTGACTCCAGGAgccatcactttacaacctgagattacagctccaagattgcctttgcaaggctccacctgctggtctttggaggta
atggcaggccctgcctagaagggccaagattctggtcctacctgtggagtctggctcactgtcagaaagttggggcacttatacctgagtccctctatct
tgggggcggggtcgtggcatctctcaggcacacctggattccggcctcaagaacttccagaattgggctcctctcaactcccaactcagatccctgggtt
cccacctgttggtgccctttcagagggggtgtgagttttcgagtttcttgtactcttcgcctgacctggtacacttgtttgcattaactgcctagtccct
ctgtttgacttgggggtgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 446 136 NA intron:MYH11:NM:022844:3/42
0 chr17 64717906 64718224 1000905 0 - Yb8NBC48; RIP_Alu_chr17_064_03 AGGGAACAGGTGATGTTTGG GAGGATGCAAAAGCATGTGA SINE Alu Yb8 tgagtgggtaaaggaaatatggcatatatatatatatatatgtggcataaatatgtggcatatatatatatgtatatatatgccattgtatatatataca
tatatataatgaaatactactcatccataagaaggaatgaaataatggcatttgcagcaacctggatggagtcagagaccattattctaagtgaagttaa
ctcaggaatggaaaacgaaacatcatatgctcttgcttataagtgggagctaagctatgaggatgcaaaagcatgtgaataatgaactttggggacttgg
agggaaggatgaggggttgaaggataaaagactacacattggatgcagtgtatactgctcaggtgatgtgtacaccaaaatctcagAAATAACCACTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATAACCACTAAAtaatttacccatgtaaccaaacatcacctgttccctcaaaactattgaaataataataataataata
ataataaagtaatagcataagctctacagatggcttttaaatgactataaaatttgtagatagtgtgtgcacatataatcctaaaacctaatgtacagtc
atgtgctgcataacaatgtttttgtcaatgatggactacagacaccacagtggtcacagaagatcataatcccatatttttactgtaccttttctatgtt
tagatatgataagatagagataccattgtcttacaatttcctacagtatagagtacagtaacatgctgtacaggtttgtagtctaggagccatgggctac
cacatagcctaggtgcgta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 58 511 178 NA intron:ABCA10:NM:080282:10/40
0 chr17 19484021 19484317 1000906 0 + Yb8AC1747; RIP_Alu_chr17_019_01 TACACGTATGTGAGGTGCCC AGAGGGGACATCCTTGCTTT SINE Alu Yb8 taagccatgtttgtgccactgcactccagccagggtaacagagcaagaccctgttttcccctaaaaagaaaacattgtgctaaggaaaataagccatatg
caggcctattatacaaggacacttgtacaagtacgcaaagacacatcttgtatgattacacgtatgtgaggtgcccagaatagtcaaaatcataaagtat
agaggttattaggggattgaaagagagcaagaggggaattattgtttatgggtacaatttctgtttgggatgatgaaaatgatctaaaagtgaatgatat
tgatggttgcagaacattgtgaatgtacttaatgtcactgaattgtgcaccttaatggttaaaatagtaagttttatttattttatttcAATAATAAAAA
TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA
AAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC
TTGCAGTGAGCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAAT
AATAAAAAtgcctcacttggatcacaaacatctacaaaattctacagataacatattagtcaaaagaagctgcatgccttcctgctaatattaggaacaa
agcaaggatgtcccctctcaccactcattttcaacatcgtaactgaagttttagctaatgtaataagacaaataaaggaaatgtatacatattaggaaga
aagaaattaagctgcctttgttcacagataacatggttatcaaggtagaacatcccaaataatcaacaaaaaagatttctggaactaataagtgattata
gcatggtatcaggatgaaagttattatacaaagtcaattattttactatacaatagcaatgaacactttggatttgaaattaaaattaaaaacacca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 662 358 NA intergenic
0 chr17 40280046 40280339 1000907 0 + Yb8AC1758; RIP_Alu_chr17_040_01 CCAGGAGAGGAGGGCTAACT AAACAAGGGTTCTGCCAATG SINE Alu Yb8 tccagcctgagtgacaaagtgagaccctgcctaaaaaaaaaaaaaaagaagaaaaagaaaagagagtttgccgtatggttaggcttagaaggtatcccat
tggacagggcacggtggctcatacctgtaatccctgcactttgggaagccgaggtgggcggatcaagaggtcaggagttcaagaccagcctggctatcag
ggtaagaccccgtctctactaaaaaaatacaaaaaattagctgggcatggtacacacctgtaatcccagctacttgggaggctgaggcagaattgcttca
accaggacctgggaggcggaggttgcagtgagccgagatggcaccactgcactccagcctgggctacagagcgaaactccgtctcaaaaaaacaaaaAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGAAGgca
tcccattggcagaacccttgtttccagcccagggatgaaggtagccagttggtaattgtgaagaacctgcctggaaagagatggacctggaaaaacagga
gcagctcaggaaccagaatgtgttccttagtactcatgtgcaaaatatatgctaaattacatgcaaatcaatgtccaatcattataatctctggcaattt
ggtaactaatgctgttacactatctggtctaggacatttctggctccctggggccagatcctgctctgtagctcccacaggagaaaccatcacagaccaa
aggccagcgggggccccagcactcaaggactgtttctcccaccaccatctgtggacttttccagctgtttttcttggcccaaggatcacaccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 999 706 NA promoter:HIGD1B:NM:016438
0 chr18 37441996 37442319 1000908 0 + Yb8AC1789; RIP_Alu_chr18_037_01 GGGTATGGGGCACATAAAGA GCTGAGAAGAAAAGCAAAGAAAA SINE Alu Yb8 attattttgtatttctctcttatttttaacctcccctatattttgttgagcaaattagggtccatcagcctggaattttcatacattcccacatccaaat
ctttcaaccttcctacataaatattcttctcgccatttttttcctctaactcaggtgattaagtttctctcctctaccaaggggactcgtcatatgtgct
ctgcatcacaaatcccctcaccttctcaagggctttgctttctcaattgccccctttctctcctacatcaacttctctcttttcaccaaattgttcatat
tttccctgccttcttcaccacctctgggtgtgtgtgtgggggtggggtgggggtatggggcacataaagataatccttcgtacattTAAAAATAAAATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
ATAAATAAATAAATAAAATAAAAATAAAAATAAAATTAaaattaaataaaatctgcctcccataactttagagtttcctacaaactacagtacattttct
ttgcttttcttctcagctaaacctgtgaaaagaattgtctgacatgctgtctctacttcttttttatgatttttagagacagggcttcactctgtcaccc
aggctggagtgtggtggcacaatcattgatcatagccactgcagcctcgaactcatgggctcaagtaaccctcccagcccagtctcccaagtagctggaa
ctacaggcatgcaccaccatgcctggctaattttttcccttttttttttttttttttttttttttccataaagacagggtctccatatgttgcccaaggt
ggacttgaactctgggactcaact UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 467 135 NA intergenic
0 chr19 6103306 6103560 1000909 0 - Yb8NBC598; RIP_Alu_chr19_006_01 TGGGTCCTATCATCCCCTATC CCAGAAGGCATCTCATGGTT SINE Alu Yb8 tttaagcatagttgtaaccatacagtgtataaagattttgatacctgctttgtcacctctgacatcaaaaatgcttaaaatgtgctcttcagagccatca
tttcaaaatattaccgagaatcccatccagaaggcatctcatggtttaatccacagctgtgggacacttaggttgtccccgactttttgccatcactaat
aacacttccaagaagtatctttgtgcataagccaaaatatattcatgttttggttttgtttctttaagtaaaactcccaaaggtagaattacaagctcaa
gaagaaatcagtattttatttttacttttgtttttttcacgattacagcctgggcaacatagcaagaaaccatctctacaaaaAAAAAAAAAAAAAAATT
GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGCCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGC
CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATTagctgggtgtggtggtgtgtgctcatag
tcccagttaccctggaggccgagttgggaggatcgcatgagcccaagacttcaaggctgcccactggctgtgtgagcctcagtttcctcatctgtagata
ggggatgataggacccacttcacattgctgtcgtgaggttttacaggatcatacacgtggagcacaatgcttctgcacataatcagaaacctctaaatgc
tatctacaattattattttgtctgcaaaaagttcttcagctgaagaaaatcgagaggtctgagactgctagtctaatgggtgttattgcgtatgacctgt
gatcagaatgatttgttcgtgcatctatcctgcctgctaactagggcgttcatcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 60 691 398 NA intron:ACSBG2:NM:030924:4/15
0 chr19 22626863 22627023 1000910 0 - Yb8AC774; RIP_Alu_chr19_022_02 TGGCCTGTAAACAAAGATGAGAG TGGCAGATATTGGTATCTGGAAC SINE Alu Yb8 cggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtggaggcgagagcccgtagtcccagctactcgggaggctgaggcaggagaatgg
catgaaccccagaggcggagcttgcagtgagctgaaatcgcgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaga
aaagaaaatttggaataaaatctgagtttctgaatctctaacaagctcaccagtaatgcccatgtttttggtccaagaaaactattttgtcaaacatcca
gtaagtggaaaagcctgtgtgtttttcagtttttctggcctgtaaacaaagatgagagctttcattttccaaagacagataaatgcaaagaaaaCCTAAG
GTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGTCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTG
CAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGCCTAAGaaaggtcagctgccagattaaatgtgattgttt
atgcacatctgctgaataaagatactcagtaatgaagagaaaaataattaactctatagaaaaaaatctgtcacagagttcattaatcaagtgagttatt
aacatcaagtgcatgaagacaaatgtgctgatgcacacagaaggacacggcatcactgctatgatattgcccagccaaaagtaaattatagtctgaattt
aatcataaagaaacactggttttatgtaaagttccagataccaatatctgccatgttctgtaaattttaatagtgattttaagtagtctttctttcacac
cctaaagagcaagtatctcctaattattattatttttaaactttctgcgtaataaatgcca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 518 351 NA intron:ZNF492:NM:020855:1/4
0 chr20 5891001 5891316 1000911 0 - Yb8NBC93; pAlu20-5890901; RIP_Alu_chr20_005_01 AAGTGAGTCCCAGGGCCTTCT CACACAGGCACTTGTTTGGT SINE Alu Yb8 ttgatccttctcacttactgttcgtatcctgctatgggtatgcaaggtgctttgcttgcctcccacatgaagcacttattgcttcctctgtgcccatgcc
acctctcgctccttcaacaaccctctcattctgtcccacatgcccaatgccaatcctctccttttcaaaaggctttccagagttttctttaatccccagc
tttctcatctaggctccttttgcactttctgtagagtgtaatacttattatgccacacaggcacttgtttggtgtttggatctcaagaagcatttataaa
ttcagactgtggcagactgtatttgccaaatatgattgcaacaatatttatcttcaagactttttagaaccttgctactcctccattAAGAAATGAAGGC
CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGGTGA
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATGAAGGCtaattccttctcctggaatttgagaaggcctgggactcactttgttaccaacagaatgtgacacagtgatg
ttgcacgacttctgagactagctcacaaaaggcaaggccatttctgcctaccaactgcacttcttgacctgaacctgtcagcagccatataagcagactg
agtgcctgagctgctatactgtgtgcaagaagcccaaactagcccacacagccacatggagaagaagatgcctggccagcccccagccaccttgctgtac
tccagccaccatctgactacaactccatgagaggcctggagccagaactagccagttgagtagttcttccaaactcctgatccacagatatcatgagaac
taataaaatgattggc UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 601 274 NA intron:MCM8:NM:182802:7/19
0 chr20 14928988 14929305 1000912 0 + Yb8NBC435; Yb9NBC53; RIP_Alu_chr20_014_02 TGAATGATTGGGACTGGGTA TGGCTGGATGAACTTTCACA SINE Alu Yb8 tttaaagatataaaagcaatactgtatattgttcagggctatatatctgtacaaactttaagcaattggctgaagggatgcatactaaattcatcattgc
agttactcttggaaagtggaatttgactgggaaccaagaggacttaattttatctgtaatggtttctttcagatgaaaaaataaaaggcttaaagccttg
aagggcaaatatcaactgaattcatgatgatgattgggatagaagaatacttttctacattaaattttttttattttcctcagaaagcaaaacaaaacac
aaacaaacaaataaaatctattatgaatgattgggactgggtataaatgaggtgtttggaattctggtgatgttctataacttcatcAAGAGGTAGAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGGTAGAAACatggaaatgttcattttgtgaaagttcatccagccatacaaggtaggattggtccactttgttgtatgt
gtgttatccttaggtggaaatttctggagcaaatatggcaaaataagaaaatttgacgtagtctgacataaaacttgacatacacagattattctttatg
cttttctaaaagcttgtgatattttaataacttcaaaagagatggttcattaataaaaatattttgattttggctgtattttgattgcaaatctgtgtac
tgcaaaacaatctcattacttgctttttctgtaccataccatgattttcacttcatcacaccttagcaaaagctgttggggaatgagaagacatgaatgg
tctggtaaatgctgttga UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA 55 444 113 NA intron:MACROD2:NM:080676:5/17
0 chr20 45452487 45452800 1000913 0 - Yb8NBC445; RIP_Alu_chr20_045_01 ACCGTGACATGCGATTTACA CAGGAACTCATCAGCATTGG SINE Alu Yb8 ggatctgaggcaagtcctggaatccaggtgacaggaactcatcagcattggagtaaaagagatattcaaaacagagtgaagagtaagtataaataacagg
aggctggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtctggagatcgagaccatcctggctaa
catggagaaaccccatctctactaaaaatgaaaaaaagaaattagccgggcgtggtggtgggcgcctgtagtcccatctactcgggaggctgaggcagga
gaatggcttgaacctgagaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcaacagagcgagactcgtctcAAAAAAAAAAC
AGGAGGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCT
AACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACcggaggctatttgtgtaaatgtaaatcgcatgtcacggtgagtaatcaagatagtgctgcccttgggggatgtga
ctaaaaggaagcacagagctgcccaattaagtattacatttcccagctttctttgcagctaggcgtggccacatgacaaggccacatgtggatgtggggc
agagtggacagggaggttgtgtttgcacaaaagcatctacctgtgatgtttaagttgagatggatgaaaagaaactggccatgtgcagatactggaagag
agaatcccacgcaatatgccattggaaaggaatcttagtttgagaaattcaagaggtgccagtggtgggggtggtgtgggcgtggcaggggatagactct
tggagaacaaaatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 58 733 408 NA intergenic
0 chr20 59407576 59407882 1000914 0 - Yb8NBC516; RIP_Alu_chr20_059_02 GGGCTCAGGGATACTATGCTC GCCTAGGCCTACCACTCAGA SINE Alu Yb8 gagcccctgcagggcaggctctgagttcctcccctcaggatctcctgagcccagcatcacacatgtgagcaggaactaaaaaagaggcaggttgaaaaaa
cactgaaagggaactggagaggccaagtgcttcgtgggtgatggatgggcaggtggacgtgagtggccaatttgccaagtcctgcagcgaggcccggcac
acaccatagaccaaccggataggacctcatgatggaggtgaggctttggggagggcagagggggtgcaaaggctgagccaggcctggggtggtcatagag
ggagctgggagatgagccaggggctcagggatactatgctctctacctttgggtacgtttgaaattttccaataaaaaatctttttAAAAAGTGGGTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGTGGGTTTTtcctcctgaaacaattgttaaggttctgagtggtaggcctaggctttaaggacttagtataaataatgacctggggttc
actttacaaagcatttaacccacatccacatttaacccacatcagcatttaacctacatcagcatcacacctccatggccagaggctgcacaatctgaaa
atgtgagagcaacagggcctacaggactgggctgtggccggggtctgactgtgagagtcctgctctgggcacaccagtcacacctgctggcctgagaaag
gggacacacaatgactgacgcaaggccaatcttcctccaagacataattgtgtatgtgtcaaaattaacgaatttggctaggccacagtacccagaccta
ggtaccc UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 445 124 NA intron:CDH4:NM:001794:2/16
0 chr20 26009339 26009645 1000915 0 + Yb8NBC523; RIP_Alu_chr20_026_01 CGAATTGCCAGTGGTTAAAA ACCTTCTGCACGTCTCCAAC SINE Alu Yb8 gtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccggg
aggcggagcttgcagtgagccgagatcacgccactgccctccagcctgggcgacagagcaagactccgtctcaaaaaaaaaaaattattcacatctaatt
atctcaggagacatcaacacagcaatgttgaaaatttcccattaattgttaatccatggagaaaaactggacaattattttttaaaatatgaaaagcttc
atataatacaaattatactcccacatgtgattcaatttctattaatggcagagaagttaataattacgaattgccagtggttaaaaAAAATAAATCATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGATTCCGTCTCAAAAAAAAAAAA
AATAAATAAAATAAATCATTCatcgttggagacgtgcagaaggtttaaaagaggtaagaattagtttttgggtttggggcgttttacgctttccaaaagg
ttttgctctttttttttgctcatggctttctctctctctctctctttctttctgatttcagtttcttttgatttctcctgcttagaaatggtgagagaac
tttggatgtggaacgtggaggaggaggaacacgaagtggggatctccacttggggtggtcagcactgcgggtgcccagcaaagtcactgcctggtccaca
tcccggaggggtctctgcgcctcagtcggcatcgcagctgatggtgaaacttttggtgtggcagaagagtgtccacaaacttcggaaggtatccgctaca
tcctcca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA NA NA NA NA intron:FAM182A:NR:026713:3/5
0 chr20 40377147 40377267 1000916 0 + Yb8AC828; RIP_Alu_chr20_040_01 GACCACCTTGATGGAAAATACA CATTGCCATTGGTCACATTAGA SINE Alu Yb8 gaaaagatcttatgtaactgaaagactataaaccaagaaggtggttgcattggttttgtaggatgctaagagtgtgaatcaagaacaatggatagaaact
tcaataggaaatatttcagtaagtacattaaaaagcctccttagagacacagcccactccctactccagaaaacagtaaagctacctcagagataaatga
gttctctgtcattggaggtattcaagaataagcactaatgccagttaattggtgttgtagtatggatagaaccattgttttgtgtgtgtttgagattgtt
gaatgacctttgatatgctttccagccctgtgattttctaatattatgactggtgccaatccttgaccaaagaaatatttgacacaaaaaTGGTTACCTT
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGGCTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATGGTTACCTTgtttttgtttttggagaaacactattttctaatgtgaccaatggcaatgaaaaagggcgtattaatcac
taatcaactaaaccatgattagtgcattcctagatagcaaattgatagatattattattatatatgaagaacttaaggatcagagaggtcatgtaatttc
ctcaagtaaagcaccatctctttactttaatacaggagtgtgcaaaggttttatgtaaaaagccatataataaatatcttaggctttgtggagcatatag
tctctgttacaactgttcaactttactgttaagcatcaaaacagccatagacagtatgtaaatgaacaggcatagctgtactattatttttttaatttaa
aggcatgaggtaggatttgcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 691 560 NA intron:PTPRT:NM:007050:12/31
0 chr21 40508750 40509060 1000917 0 + Yb8NBC106; RIP_Alu_chr21_040_01 TCACAGCACAATTCACAACTG CTGGGTTGCATTTCATGGTA SINE Alu Yb8 agctttgaaagaagctgtgagtagcagcctacaccgctgtctttgggaaacaccactgaacatgtaaggattcttatagactacaggtaaagggtggaaa
aagagatttccagcaaatggaagccaaaaacaaggagtagcgattctgatatcaaataaaacggacttcaaagcaacaacagcaaaaaaaaaaaaaaaaa
caaaacaaaaaacaacaagaaaaagacaaaggtcactatataatgataaaatgaccaattaaacaagaagatgtaacaattgtaaatatatatgcatcaa
actccagagttcctaagttcttgaagcaatcagtatatcaaaaagacacctgtacacatgtttatcacagcacaattcacaactgtAAAGATATGGAATC
CTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCT
ACTAAAAGTACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGG
AGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGATATGGAATCaacctgagtcctcatcaatccatgaatggataaagaaaatgtggttcatacacaacttacccatgtaaaaaacct
gtacgtgtaccctctgagcctaaaataacagttggaaaggaaaaaaatcataaaagcaagactcaactaaaaaaaaacaaaaagaaaaaattgtgatata
tataccatgaaatgcaacccagccataaaaaaaaatataatgacttttatagcaacttggatgaaactgggggccgttattctaagtgaagtaactcagg
aattaaaaaccaggtactcatgctctcacttataagtgggagctaagctataggtatgccaaggcattcagagtggtgtaatggacattggagactcaga
agtggggaggg UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 558 233 NA intron:DSCAM:NM:001389:11/33
0 chr21 36786320 36786628 1000918 0 + Yb8AC1817; RIP_Alu_chr21_036_01 AACTCACGTCCACCCAGAAC CGTGGCTGTCTTCCTTCTTC SINE Alu Yb8 gaaggtcatgtgtgaggctgtacagctttcccagtaaatatggtgcatgttgggaggacaggtgcatgtggacaggccgcctctcttcccaagcacccgc
tctgggctggggtctcaccactggagtaagaacagtatcatgatgcattaagtgaggagtccttgacgtgggttgaatagtgtccctgcaaaactcacgt
ccacccagaacctcagactatgaccttctttggaaatagagtctttatgggtgtgattaagttagtatgtggctgactgcggtggctcacgcctgtaatc
ccagcactttgggagcttgaggtgggaggattgcttgaggttggtagttcgagaccagcctgggcaacatggcgaaactctgtctctAAAAAAAATGCAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAATGCAAaaattagctgcagggcatggtggcgagcacctgtaatcccagctacttgggaggctgaggtgggaggatctcttgagc
ccgggaggtggaggttgcagtgagcagtgattgtgccactgcactgcagcctaggtgacagagcaagaccctgtctcaaacaaaacaaaacgaaaaaaag
gtaaagatgaagttatactggcttccaatggctgctgtccttacaaaaaaaggataggcatggaagaaggaagacagccacgtgacgacagaggcagagg
tggggatgatgcgactacaagccagggaaggccaaggagacctggagccaccaggacctgggaccagcaaggaaggggcctcccctagagccttcagagg
gtcgtggcc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 791 469 NA intron:CLDN14:NM:001146078:2/3
0 chr22 41879290 41879599 1000919 0 - Yb8AC1821; RIP_Alu_chr22_041_01 CAAGCATTGTTTGCACCATC AAACTGAGGCTTGCCAAAGA SINE Alu Yb8 atccagggggaattggttctgttaagaaagactacttccctttccttcgaggttcgggggttaaacttttttttagtaaaaaataaagaaacagcctggc
cgacatggtgaaacccatctctactaaaaatataaaaattagccaggctgaggcaggagaatcacttcaactctggaggcggaggttgcagtgagcccag
ctggagccactgcactccagcctgggcaatggagcgagacaccgtctcaaaaaatatatatataaataaaaataagaaattaagaatgacttccctagtg
gtctagtggttaaaaaaaaaaataaaaaagactaccgttttaaacagagagcacatccaagcattgtttgcaccatcaaaagtAAAGAAAACACAAATAA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAACACAAATAAgccaggaacagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggaggatcgcttgagcccag
gagttctgcaggagactgcagtgagctatgattgcatcactgcactccagcctgcataccagagtgagaccctgtctcaaacaaacaaacaaaaacaaga
aaggaaggaaggaaggggaagaaagaaaaaaagagaaagagaaaggaaagaaggaaggaaggaaagaaagaaagaaagagaaagaagaaagagaaagaag
gggtgggaaggggaggggagggagggaggaaggaaggacggaagaaaggaagaaagcaagctaaagtgaaaagtaggctccctccctgcgagcccaagcc
cctcacccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 998 671 NA intron:TSPO:NM:000714:1/4
0 chr1 62924417 62924746 1000920 0 - pAlu1-62509441; Yb8AC1015; RIP_Alu_chr1_062_01 CCAGGGAGTTATGATGACAGG TCAGCATGATGTTTTCAGAGAT SINE Alu Yb8 tttttctttctttccagcgttctagcactttttttttcctgaaggggcaaaatagcaagtgtttaagagcatgggctctactctcagaccccgacatggg
ttcaaatcctgattggtattttctagcttgggactttggccaagttgttgggccaaatttccgtttcctcgtctggcaaatgagaataataataggaccc
agctcatagtgttgttgtgaacattaagtggcataatttgtgtaatgtgcgtaggatagtacagggcctatactacctgtcatcaaacacttgtagtaat
tagtttctcccagggagttatgatgacaggaaattttttttttttgtaaaataattaggtcttacttctgatgatgatgtcattaaaaaatGTTATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTATTACTtgacatgtattcctagttttaatttctcttattagaaccagaagtttatctctgaaaacat
catgctgataaagtaagtgcactttagagagttggatatgaaattgtatgtctattagtggagttcgccaccagatgggataggacaaaccacaagagaa
aaagagaatcagttgtgcaaaacaacacaaaatgcaaataagaacagctttctaagaagttataaaattaagataatgtgaatgaagaaatgtgcactta
ttggacagacaggaggtggatatggtagtgattggtgattggacatgcaaggtgaggcggactgaggagtctgggatgacatcctaagttgggcaaccac
gtggatgatggtggcagtctttggggtaag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 499 165 NA intron:DOCK7:NM:033407:1/49
0 chr2 8534263 8534552 1000921 0 + Yb8AC1121; pAlu2-8621625; RIP_Alu_chr2_008_01 AACAGCAGGAATGAGGTGATATG TCATAGGGCACTAAGGAAGTGAG SINE Alu Yb8 ggaaaaaaaaataactatgagaagcaagactcgaaatctaccacaagaaaacaccaacaacaaacggaattaataactctgaacaccaaagaatgtacct
gctctttcattcaaccagcttttattaaactattacctaccagacactgtgggagttactgggatgttggggtgtataattctggatctgtgccctggag
gagcttgtatgggaaagacagacactaaacaaacagttgcgacaccgtggactagccctgtgccaacagcaggaatgaggtgatatgggagccaattcac
ccacttggaggctcaagaacagggggattttgccagatgcagcagggtgatgataggattagacaggatgataatggaagtccAGAAATGTGAGTTACAG
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTG
CAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTGA
GTTACAGccacaccttaaggcacacctctcacttccttagtgccctatgagaatgcctggcccctacggctgcagagcagtacaaaggttaacgagatgt
gggaaaccactcagaatttttatgctaaagtcattacatttgagagcgatttcatattggctggactttggtctcagtcaatatgatttcatctggcacc
atttatgttaccaacttaaactggctgctatttccccaaaaaagtatttccctaaaaatcttcacatatatgtctgccttttcatcaattaaggagtatt
tactgcacacctccatgtgttcatatcctatttgacatctataaatgaatcttaaaaagtgcaactaagcaagcgtgtatcagtggcatc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 486 179 NA intergenic
0 chr3 6654969 6654970 1000922 0 - Yb8NBC406; RIP_Alu_chr3_006_01 CCTTGGGCAAAGCTGTTTTA TCCTCCCTCAAACATCAGAAA SINE Alu Yb8 gtgcatgcatgaatttatttctgaattctatatcctgttccacgggtccgggtgtctgtttttgtgccacgtaacatgctgtcctgtttactttgtggaa
tattttgatgtccagtactgtaatgcctgcagctttggtcattctgcgcaagcctgctttgcctatccagggtcttttgcgtcttcaaataagtaccaag
gtcctagaaattttgtaatccacattctcattttctcccttctttccttcggcccttcttctgttttcttccccatttcctccctcaaacatcagaaaaa
tgtactggaggatgtttggttagaaaaaaaaaaaaaacaaaatggtgaaagtagttttctgtaaatgaattggttattgttgtttcaccttAAAAATGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATGTAaaaagtgagaattaaagatgtaaaacagctttgcccaaggaatacagaactactaagcctgggtggtgccatgcc
gtgtttcttcctgcctacccactgaatttaatcctccaattcctcaattgtaaaaggatgatctttctgatctcttcaaacgctgatataaccaagtcca
gtctgataggtttgtatgattttcatattctcaccacgaaaaagtgtgtcaagtaagttaataaggtaattgaattatgttaatagaactatcaggtctt
taatgtgtatgtatgtgaaaacaagtttgaattgaaatgaattcttttaaataaatgagcagatataaaaatacttccttcagtcatttatttattcact
tgccatgtatttattg Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 488 153 NA intergenic
0 chr3 69928337 69928612 1000923 0 - Yb8AC1171; RIP_Alu_chr3_069_01 CACAAACATGGTCTTGGTGC TGCTTGAATGCACAGCAGTT SINE Alu Yb8 ttccattcacatgtggcattaaattggcttgaagggagcgaattagaggtataccctctggactaaattatgatacaaatccctgcatactcccattaaa
aataatttataaacttagaatagtagatgttctccttgctaatgtatttagcttatgttagagtcagaaaacctgcaataaaagtctcctataaaatggg
tacagtttctgcaacctttatcacacaaacatggtcttggtgcttctgctttaaccacttaacccctacacatcacttgttggtggcatttgctcaagta
ttttgaaatgtttagtttgttgtcaaggcaatagatatggcctaacaaatcactctgtcccaggttatgtttcatgactatcttAGAAAGACGGTGTTTG
CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACCAAAAATACAAAAAATT
AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAGACGGTGTTTGtaagcttc
acaaactgctgtgcattcaagcagctttaaatgttttactacctgcaaaagtatttaggaaattcctcataggcactaaaagaaaaaaaaatcctttcag
attagattcccttttctaaataagaaagaatgctttgccatatttctaaaatgaatacaaactaaacacaatcttcaaaaatagcaacagaggccaggcg
cagtggctcatgcctgtaatcccagcactttaggaggccgaggcaggcagatcacctgaggtcaggaattcaagaccagcctggccaacatgaagaaacc
ctgtctttactaaaaatacaaaaattagctggtgtggtggcacatgcctgtaatccctactactcgggagtctgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 500 208 NA intron:MITF:NM:006722:1/10
0 chr4 190861631 190861926 1000924 0 + Yb8NBC402; RIP_Alu_chr4_190_04 CATTTCCCACATCACATACCA GGTCATCCTCACTTCCAGGT SINE Alu Yb8 ttcaagaaaatctcctaaatgttgataaaacagtggaagtctgtgccctctgagccagagctagttcctattccctcctccagctccatgtcacaggaga
tctccacatcacatgatcacacgtcacatgaccaggaacatgggaactccttttcagccccactcccagtcaaagacgtatgattacaccccaggtgatc
tcatccccagacaccacccctctaagtaaaggaaattaggatgccatctcacatcaaggggacagatgagatgtttcaacaatgttgatgtttggacaac
taggaagatatatgaaaaaataaagttagattcatttcccacatcacataccaaaataaattccaaataagacaaaaactttaatgtgaatAAAAATAAA
ACTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAC
AAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA
ATAAAtaaataaataaaataaaataaaataaaataaaataaaataaaaccatacaaaaacataaaataacattaaagaatttctttaaaacctggaagtg
aggatgacctttttatttctgaaaatccagaatccataaagtattaacattttatcacatacaaattaaaaatttctacatggcaaaaaataaggtattt
ggatctaaagacatataacaaattggagggcagacatttgtaatcatatcacagataacgggtgaatctctctgtataggaacttttagaaatgaagaag
gaaaagataaacaacagaaaaggattcaaagattaatagttctcagaaaaattcaaataattttttgatagatgtcaacctcagttataaaacgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 62 477 172 NA intergenic
0 chr5 157385611 157385612 1000925 0 - Yb8NBC294; RIP_Alu_chr5_157_01 CCGAGATTTTTCCCACCATA CCAAAGAAGGGCTTGAATGA SINE Alu Yb8 agtagcactgggcctatgcccagatctgttgctttaggacaataaatcatttctattttcaccccctccccacctccatccccatttatagaaaacagcc
ttgtgacctgactggtaactttagggccagccattggcaaaactgggaggcccaagataaggagccttcctctacctgtgaacagacccctcttcctgcc
cagaataaggcacacacatctttatactgccctgagccttctgccgtaattacccaacccatctcactctccaggacagcacccaaagtaccgagatttt
tcccaccataatgcccctatcttgagtgttatttttcaacaaggctctgtttcctgctaaagagtaaatggttaatctaattttaaAAATAAATAAATAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
TAAATAAATAAATAAATAAATAAATACcagcactcaagtgtcaataaaatgccaactataatgacgtgagaggaagacttattttctactgttttattta
aaaaaaaaaaaaaaaaaccctccaaaccctctcttcattcaagcccttctttggttgaattagggtgggtagctgagactctcttgttcacctctccacc
ctcaatgcctagaacagaccctggcacacagtaggctcccaggactatctgtgaatgagtaagagcccaccccactttccatttcctcccccacctgaca
gatcctgagcgggaccttgaaagaagagcttgcagccaatgaagttgattcatcaacagattcatcaattgatgaaatagattaccctagaatcttgatg
ccaaagtccactt Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 564 237 NA intergenic
0 chr5 29475156 29475438 1000926 0 - Yb8NBC509; RIP_Alu_chr5_029_01 CCTCCTGAAGGTCCCACATA GAACCTGGGGCAGAATGTTC SINE Alu Yb8 gtgtttagtaaacaaaatatagttcaatgtgactgaagcatactaagaggcagaagaatgtggtgtacactgtagtgtagaggagtgtcttagtttgggc
tgctatacaaaataccatagattgagtggcttatagatgacaaaaaaaagtatttcttactgttctaggggttggaagtccaaagtcagagtgccaggat
gttctggttttggggagggcccttttgcaggttgcagactgttaggtttttgtataagcacatggggaaagaagtgagagctctcttaggtcccttttgt
aagaacactaagcctattcatgaggcctctactatcacaacctaattacctcctgaaggtcccacatactaataccattacactgacagttAAGATTTAA
TTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGCGGTGGCGGGCGCCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCGGTGAGCCGAGATTGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTAAatatagaa
attttgagggtacactttaaaaattcagtccataacattctgccccaggttccccaaaattcatgtcttcacatgcaaaatgcagtcattccattccaac
aaatccataagtcttaactcattccagcctcaagtccagtctaaagtccaaggtcttatttaagtattaactaaatcagatgtaggtgagattcaaggta
cagttcattctcacaaaatttctcttcatctgtgaacctgtggaatcaaacaatatgaacattcaaaatacaatggtgagacaggcataggataaacatt
cccattccaaaaggaaccgctattcaaaaaaaataaaataaatgaatgctgtgtcccaagtaaatctaaaacctaacagggca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 62 404 112 NA intergenic
0 chr5 29494737 29495052 1000927 0 - Yb8NBC510; RIP_Alu_chr5_029_02 GAAAGGCAACAGGAAGTCTG TACTGCCTTTGCTTTGTTTGC SINE Alu Yb8 gaataataatgcaccataaacacattggacttagttcataaagggaagagccctttgaaattcagaacattatcaatgtaattgtatgatgatgatttag
tcaggaaaaaaaatatatgtgatcagaaaattaaaaaccaataaaagcattatatacatttatttctcatttctattaaaaaattcacatttacagaaga
gaatttcaatatcctggaaataatatttgtaaaatccagcttaaaaaaattatactaacataaaaaaatttaaaaagcagctttttctctgaacaaagaa
aggcaacaggaagtctgtttctattatctctactagacttaattttagaacttatggacagtagaataaggcaaaaattgaatgtaaaaaatAAAAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATTAAAAAAAAAAATATtatttattcatataatttataataaaatttatgtaatctatatatcattttaattacaaaatatgcttatcaaata
tttccatataagtctgaggtgcaaaaaatcaattgaatgtgtatataccataaacaattagagaaaaatggtattagcagtacattgaggaaaactaagc
atatgaatattagatgtaaacatattctgcactaaagactataaagcttattgctatacatttgaaaagatctaaataaatcaaggacagtattatgtcc
ctgaaatcaatgattcaatattgttaagtattaaatgtgctaagattgttctaaacattcagtacaatcagaaataaaatgactgttgggttatttttgt
ggatattgtaaaatat UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 62 857 533 NA intergenic
0 chr5 69349593 69349594 1000928 0 + Yb8NBC543; pAlu5-69091653; RIP_Alu_chr5_069_01 TCCCTGCTTTCGGAATTATG GGCTGTGAAACTTGAGGGTCT SINE Alu Yb8 tcaatgcctgttacacatatcattttgttattttgcggcttttctggtttttttcattatccttcatctgtctattttcagttgcaaaggaaatgtttgt
gttgtatatgtgttgtgtacatgcatgttttgagattgagagaaaaagagacagacagacacacagggacagaaagagagaaaacaggagctcatactga
ttttgtattcattagaaggcaagccccatgaaggtggtagacgtcctgctttcctcgctgctgttatttttgtattatcttgatgcttttggcactcacc
atatatttgttggctgtgtcgtgaaatgacattccctgctttcggaattatgaggaggagatgagttacttataaaagcacttAGAATTCTGCTCACATG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAGAATTCTGCTCACATGaactatacaatttttttttttttttttttttttttagatggagtctcgctctgtcacccaggctgaagtgcagtggcat
gatcttggctcactgtaacctccacctcctgggttcaagcaaatctcctgcctcagcctccagagtagctgggattacaggcgtccaccaccacgcctgg
ctaatttttgtatttcagtagagatggagtttcaccttgttggccaggctggtctccaactcctgacctcaagtgatccgcccacctctgcctcccaaag
tgctgggattacaggcgtgagccactgcacccaacctacaagctccttaaattgtatttttattatgaagaccctcaagtttcacagccacttgaggttt
gatc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 757 436 NA intergenic
0 chr6 135834562 135834878 1000929 0 + Yb8NBC292; RIP_Alu_chr6_135_01 TCCTTTGTGGAATTCAGCAGT AGGGAAGGCATTGACTGTGT SINE Alu Yb8 aatgaatgaagtttccagagtatcttcagtagcatctctacctttcatagcattacactgacattttcattactttttaaatagcctgattttgtggttt
tgatttcctttttccctctaacagctttatgggataaattcccaagtagtttgtaaattataaacttttgttaacttctagttgtactgtactatttttt
ttaaaaaagtctcctttgtggaattcagcagtttcatggatcaaattatgtttgaattttgaaacgtcccaaatacatttgttcattcatgttcctatta
tacctttgccaattttttacctctttaaatgattcaggtttttttttgctttggtttatctgctattaaaatcagctttattAAGATATAGCTTACATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGATATAGCTTACATCAataaaatttgccaattttaattgtataattaaatgaattttggcaaatgtatgcagtcatgtgac
caccaccataatcatgacattgaacatttccatcattctacatgtcctgttacacagtcaatgccttccctccatgctctgaccctactcaaccactgat
ctggtatcacaatagctttgccttgtctagactttcacataaatgaaattataccatctatagccttttgtgtctggtttccttcattcagcacaaagct
tttaggattcatccatgttgctttattcatagcagtttattccttttttgtggagtagtattccattgtacagttatatgccacattttgtttctccata
caccaattaatagatgt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 660 325 NA intron:AHI1:NM:017651:4/28
0 chr6 51913998 51914311 1000930 0 - Yb8NBC447; RIP_Alu_chr6_051_03 GCAGACGCTCTGGGTAACTC AGGACAGGTAAAATGGTGGAA SINE Alu Yb8 tgagaattacgccatgataggtaacagatgaggaagaaatttgggcttgactgaagtaatgggggctgtctgtgaaggcttgcggcagtacagcccaggt
aatttgctgagcctgatgggtgtcagggtcagtccaagtgaaagcgaagagaggctgggatgaagggtgcaaaggaatagtaaagaaagcatgtttgaga
tccagaacagaataatgggttgtggagggaggtattgaggataggagagtatatgggtttggcaccacggggtggataggcaaaacaatttggttgataa
ggcacagatcctgaactaacctgtaagccttgtctggttttaggacaggtaaaatggtggaattgtaaagagagtttataggctttAAAAGGCCATGCTG
GGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGCCATGCTGtaacaggtgagtgataacaggctttaatccttttaaagcgtgctgtgggatgggatattggcattgagtggg
gtaagggtgattaggttttaatgggatggtaaagggtgcatgatcagtcgccaaggagggagtagaggtgtcttatatttgtgggttaaggtgggggggg
atacaagaggaggatgcgaaggaggctttgaactggggtaaagggcagcagtgaggtgtggctgtaatctaggaacagtgagggaagcagataattcaat
taaaatgtctcggcctaataagggaactgggcaggtggggataactaaaaaggagtgcataaaagaatgttgtctaagatggcaccagagttggggagtt
ttaagaggtttaga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 918 590 NA intron:PKHD1:NM:170724:36/61
0 chr6 46075435 46075744 1000931 0 - Yb8NBC474; pAlu6-45968765; RIP_Alu_chr6_046_01 GCAAAACACAAGTTTGAACTGC CTGATGGGAAGCCTTACTGA SINE Alu Yb8 gggttcagatgaacaggtggtaacaactaaaaatggtgaccctgaagtcacaaatcagatggatactcccctcacggtgggtgtctccttcaaaggagca
tgtgcaccatcatcttattattacacagacatacacagtatgtgtgtgttttacatatatacagttaacctccaaacaacgtggaggttaggggcactga
cccctccatacaagttgaaaatccatgtgtaacttttgacttcctaaaatcttaactactaatagcctactactgatgggaagccttactgataacataa
cagtcaacacacattttgtaggctatatgcattatatatggtattattacaatacagtaaggagataacagaaaatgttatttAAAAAACCACAAGGAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAACCACAAGGAAGagaaaatagatttactattcattaagtgggagtgggtcatcataagtcttcatcctcctcatcttcacattga
gtaggctgaggaggaagaggaggaggaagaggaggggttggccttattctctcgggagtgacagaggtggaagacccacttatacttatccatgtataag
tggatctgtgcagttcaaacttgtgttttgcaagggtcaactgtatacacacacataatatacaggatacacatataaattttatgtgtatatataatat
gtatacatacacttttctcctgagatttgaggtccaaaactgaaatacccacatccacatagtatttggcacacaccatatacccagcaaatgatattcc
tgtgtaaatc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 659 332 NA intron:CLIC5:NM:016929:1/6
0 chr8 123304442 123304443 1000932 0 - Yb8NBC639; RIP_Alu_chr8_123_01 GTATGGAGGGGGCTTCTTTC AAGTGGCACAGCCTTATTGC SINE Alu Yb8 ttttccgtgtgttctgactgctccactcactggccattcacccttctctcttctctctttgggcctccctatttcctgagacacacagctatattgaaat
tatgccaaattaacaaccttacaattaataacctctaagtgttcaagcaaagaaaagagtcatgggtctctctagatcaaaacctagaaataattaagct
tagtgagggcatattgaaagcccaaatcagccaaaaactaggtctcttgcaccaaatatttaaattgaaaatacagaggaaaagttcctgaagaacattt
aaagtgctactcccattaacatatgaatgataagaaagtggcacagccttattgctgatatgcacaaagtttgtgtggtctggatAGAAGATCAAACCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAGATCAAACCAGccacaacatccctcgagctaaagcctaatccagagcaaggccctaactctctttaattctgtga
aggctgagagaggtgaagaagctgcagaaaaaaagtttgtaagctagcagaggttgatttatgaggtttaaggaaagaagccccctccatacatgaaagt
gcaagtgaagtagcaaatgctgatgaagaagctgcagcaagttatccacatgatccaggtaagatagctgatgaacatgtctacattaagcaacagattt
tcaatgtagatgaaacagccttctattaaaaaaagatgccatctagcactttcagagctagagtgaagttgatgcctggcttttaagtttcaaaggacag
gctgaacctcttattaggtgc Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 557 221 NA intergenic
0 chr8 140662516 140662517 1000933 0 - Yb8AC742; RIP_Alu_chr8_140_02 GCCTTCAGTATCAATCATAGAGGTG GGTTTCACTGGGATAACTTCCTT SINE Alu Yb8 ttctaatttaatttcccatttgagaaagaattcttttatggaacaatcaggcttgaatgattccacgggcttagaaaacaagagattaaaagcttttagg
ctcagtataaaagaaggaaaaaaacaagaatgtttgtcttaagactccgttgaggctattgccttagtggaaaacgagagttggctagtctggttctcct
taagtcttgtaataaagtgactatgaaaatatcaaatgtcacaagtttaaacaagttagaaagtgataatatataatatcatgtaagtggaaaatttaag
gtttcactgggataacttccttatcagagtttgctaactggattagggtaaacatttgtttttgtagtcaagtgctagcaagctttAAAAATTTAACCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTTAACCATtattacatgtttcacctctatgattgatactgaaggcttttttttccttctgaagtttctcttc
tcatggtatttgctattttaaccctgtttcaagcaaataaaatttaaacaattaagaatttcaggcatattctattataaactatttaaaagtttaaacg
catgtactaaacatgaaataacttcctctggctgtgtatttaagaatatttgtgaatttcttttcagtagaagctcaagtttataggcgtcattacttgg
ctagttattcgggttaaacataatatgcctttcctgtgatattatgttagtagtacaagtgctgttgtattataacatttgacttttggggatcataata
cagtaaatagtaaatggacata Other - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 638 302 NA intergenic
0 chr9 190132 190443 1000934 0 + Yb8NBC434; RIP_Alu_chr9_000_01 GAATCCTCTTTGCCCTATCAAA AGGCACTGTGCTAGGCTGTAG SINE Alu Yb8 cagggtttgaatccaagtcagccttactcccaaccactttccacttcattatgttgtcttattgctgacttcctgccaggacttcccaagtgttcatttt
cacgtctgcagctcatttaattacttttagttcctttttccttttccaatccagtcatctatactatttaccctatgtcagtgaatgacatccagttggt
tcagtatttcaaaatttctggcccaccttctcttctcatctgtatctggttacctttttatccaccttatatatcatttcctaggaaagattccatgacc
tcccaaggattgactttgtacttttcatgtgcttttacagcacaaacagaatcctctttgccctatcaaagtagtaattaccaggtatAGAAATTATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAATTATCTGtttgcttatttactccccaactacactaggctcctaaggactgtggcaatattcatcttatttatgagtcatatct
acagcctagcacagtgcctggcacatagcaggtgctcactacatattttgttgaatgaatgcataaatgaatgaggttacacacatacctctatgacata
gtttggatattagttccctccaaatatcatgttgaaatttcatccctaatgtgggaggtgaggcctagttggaggtgtttgggtcaggggggcagatccc
tcatgagttgcttggtgtcattaggttaggattgagtgaattcgcgctcttagttcctgtgggatctggctgcctaaaagagcatggcactcctcccctc
tctcttgctccc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 57 471 147 NA intergenic
0 chr11 31109024 31109323 1000935 0 + Yb8NBC296; RIP_Alu_chr11_031_01 CGAGAGAAACTTGTCACTGGA GCAGAGACAATACAGGGAGGT SINE Alu Yb8 ctcagactgagaaagacatactggtgagagccacaaacaaccagtagccaacatgtaaagtgagcaaaaaatgaatacttgttttaagtcactcagctat
tgggctccttgacttatacagcacaatctaccaaaagctgataaacacattgcattctactaaatccctacaatcctatataacttatatagtaggttac
taagagtcagcctttaactgtaaattcaaatgagagtctagaaatttctatcatctattcataaggaagaccctcatgccagtgaaatttggacaaaact
ttggatatcatgggaatggaaggcagagacaatacagggaggtcaggaggaatcctaagggaaacagaaaaaagaaaatgagatAAAGAAAACAAAATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAGAAAACAAAATTAatgaaaagaaaaagaaaagaaaaggaaggaagaaattaaagggagaaggtgattgggggaaatgagaagggaagaaagagaaag
aagatgtgaaaaagaaaagaatggtgtttataggctataaaatccagtgacaagtttctctcgttatcctccttttcttactttttggaatgaatttcca
tgctttccatagtactgttaattctacaagaaagttgtaatatttaaaatatggaaataataaatgatccagtattagtctatgctttcagcctcatttt
caccaccagatcatactaccctccagcagtattatccttaaaaaacaatggataatagtgtataacatccttgaagctaaagaccaatacaggacaggtg
UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 541 225 NA intergenic
0 chr13 22455674 22455984 1000936 0 - Yb8NBC592; RIP_Alu_chr13_022_03 GCCATGGGGTAGGTTAGTGA GAAATTGCTGACGCACACAC SINE Alu Yb8 gcagatgttcatagctctgggaatggaatgcgacccttgtggagagcctataaacggacgcatggggggtgcttgcccatacagataagttagggctata
aatgccctcatcttgccacggctcttctaggtctctttagggttaaggcatactcccttctgagaatttctggtctaacaggctgtctagcctcacatcc
tgtttctatggattgtgtgtaaccagcttttgctgcaactgttactgctgattaatatcttgctaatcatagtttatggataggctgtgtttatgtttta
aggctctgttagaaattgctgacgcacacactatattgtaaattcttatcactgtatactgtacttctgcataccgatgttatgttAAAGAATTACTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATTACTTCAtccccatgtgatcatttcatctcataatcaaatgaccctaaatccctcactaacctaccccatggcgacaactgg
tcctgggttccctgctgctggtgggggagggcaggatcaggggttgccactgatactgactactgccatttccaggtggcagctgtggctgagcccacgg
cagtggctggcagggttacttccagagggccggagggtcgccaagtgtaccgctctcccatgctagggtccaatttctcttggccctggcccagagcaca
ggtttgcaggggcactgtgcagccgcagggttgtgactgctcgcctcctgccctcccgcacctgcgggctgaccgtggcagtgtctggtcctgggttcca
tgctatggggg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 480 155 NA intergenic
0 chr13 18076189 18076464 1000937 0 + Yb8AC1667; RIP_Alu_chr13_018_01 TGTGGGACACCAACAAAAGA GGGCACTTTGACCATCCTAA SINE Alu Yb8 tgtcagcaactgaacttaaagacatacagatgaacgatctggcaggcaaagaattcaaaatggctgttttaagaagagcctgaacactgagaaagcagag
acacaattcagaaatgtaccagagaaattcaacaaagaaatcaaaataatgggaaaaatcacatgtaaatcctggagcagcaaagttcaatggacacttt
gaaaatccaatggaaggcatcaacagaagaactgatcaagcagaagaaagaaacagtgagctcaaagacaggctctttgaaaatacatggtcagagtaga
atgaaaagaaacaaagaaagtttatgagatttgtgggacaccaacaaaagagcaaatctacatatcattggtgttaaaggggaactAAGAATGCAAAAGA
GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG
ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAATGCAAAAGAgatagtttat
tcaaagaaataacagaaaactttttaaatctggagaaagattaaaatgtttaggatggtcaaagtgcccaatcatatttaatctgaataagacaaccaaa
gacatattataattaaactctcaaaggtcaaagacaaagagaagaccctgaaaggactaagaaaaaggaaacaacacataagagaattccaatatgcctg
gcagcagacttgtcagcagaaacactacaggccaggagagagtaggataatagattcaagtgctgaattaaaaaaactgtcaaccatgaataaactatcc
agcatagctatcatttagaaataaaggagagattgaaacattctcagacaaacaaaaagcaaaggaattcactgta UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 438 148 NA intergenic
0 chr14 100235667 100235976 1000938 0 + Yb8NBC291; RIP_Alu_chr14_100_01 AGAAGCAGAGAGTGGGCTTG TGGCCATACCATTGAGGTTT SINE Alu Yb8 tctggttggccgttagtcagaagtgggacaaaaataggaagctgtcagttaggagtcaagtcctggccatttggggccaattgtcacagaagccacggtt
tagcttcctgcattgtcactagagatggctatcgggcctcctgcaagcctggctcactgcaggctggcttcctccactgtttatgggggatgtggggtca
gtttcctggcaggttgttgcaggtgtgggtcagcgttctgttttcagaacagacccctgtgggaggggcactgagcttcctggtggccagtgggaagagg
gggtcatggcagagtgagatagaagcagagagtgggcttggggtctgtctgggagcaggcaagagcactgttgggtaagaactacttGAAAAGGGACAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTACCAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAAAAGGGACAGCaaacctcaatggtatggccactgtccctttggatatttagtcccttgcaggtgtcctttgacacacagagacgagac
gcaggttgtgtggagacagaggcaggggttggaaggaggctgccacaagccaacgaatacctggaggaccagaagctgcaagaggcctgagaggaccctc
ccctagagcctctggagagagcacggccctgcccacacctgagctgtggacttgtggcctccggaacaatgaaagaataaatttctgttgtttttagcca
ccaagatgtggaaatttgtaatggcagctgacagaagtttgcccaaggtgacaccattggtggatggaaggactaggattggagcccaggcaaggttctg
gtagggagtg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 423 100 NA intergenic
0 chr14 56100981 56101319 1000939 0 + pAlu14-55021168; Yb8NBC467; RIP_Alu_chr14_056_01 TATTTTCCCTCCTCGGTGCT GATTCCACGGGGAAACGA SINE Alu Yb8 tcttgtcaatagattccacggggaaacgaaaatggagtgaagaaaaagtgctaaggggccggagctggtggctcacgcctgtaatcccagcattttagga
ggctgaggagggtggatcacctgaggtcaggagttcgagacccccctggccaacatggtgaaaccctgcccctactaaaaatacaaaatttagccaggca
tggtagtgggcacctgtaatctcagctactcgggaggctaaggcaggagaatcacttgaacccaggaggcagaggttgcagtaagccaagatggtaccac
tgccctccagtctgggtgacagaagaagactgtctcaaaaaaaaaaaaaaaaaaaaaaaggaaagaaaaaaaaaagaaaagaaaagAAAAGAAAAGAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG
AGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGAAaagcaccgaggagggaaaataatgaatctaaaattctatacccagct
aaatcattcaaaatcaaaaatcaagataaagaagaaacaagttcagatatacagagattcagaaactactaaaagatatctttcagaaaaaaaggaaaat
gagctcataaggaagtggcagatataaaaaaaagttagtaaatcagaaaattgcctggaaaagcaagcatctgtatttaaatatgaatattatactgtgt
ttaattttgttttccttcatttccattagcactaccctggatgggaccaaagtcagctctcacctagattactgggatggttatttctaatcactttccc
cacctctattgttacccacctcttcttctccactctata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 765 411 NA intergenic
0 chr14 77897999 77898337 1000940 0 + pAlu14-76818186; Yb8AC840; RIP_Alu_chr14_077_01 GGCTCCCTTTATTTGTCAAGCTA CTGAAAGAAGTTATGAGCAAGCAG SINE Alu Yb8 tctctcctgtagttaatttctctagatctcttgtgctatattgattttgtaaatagctattgtcacatctgccccttctgcctgtgggaactagtgggtc
ttaaaaaattgaattgggtgagagtgtagattaatcaataccaagatttattgactcgggacatttatattaactgttgtgaagtcaagaataatttgaa
ccttttcaatacttcattaagtggcatagtgtattatctatggtgtattttgaaagtatccttcctggatttggtacagctctcacctcgacttcctaaa
acggctccctttatttgtcaagctattaggatttatattataataggaatcacatcaaggtacttttcaaaggctaagtaaaaatcatAAGAAGAAACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAACTAtagtttctgcttgctcataacttctttcagattcctccttttgaaacac
atttttttttttcaactggggttaggttttcagtgagatcaaattcaggcatgggaactagagatacgcatatcttaaaattttgttctttgtggaatat
ttgcctattgcactttaaaaagtcaacaactactttgtttaattaaataattaatgcctctcctttttacaagaaggagttacatcatctttttccaaag
ggcataaattagaacacttcagacacaacctgttcttaacagggatgtttttcatatctattaagaaggaaataattttgagttgtatagtcatggtgag
aaagatatatcaataattattaacttatcctatctcttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 479 128 NA intergenic
0 chr16 29472851 29473149 1000941 0 + Yb8NBC430; RIP_Alu_chr16_029_01 TGGATCTTCCATTGTCCACTT TCAGAAACCTTCGCTCACG SINE Alu Yb8 atgacacttgaaacaagctgaaatgtgcaaatgagccacgctagtcattcacttaaatccaaaaaaatgggaaacaaaaccatttctcatttatgacaat
tctccaaattaaccctatatttccttttttaaaaaaataaccagaaaaacaataaaatgtgacaaataacttggatcttccattgtccacttcagggtat
tgccactgcaatatattcttaccatatactttcctaccagtacaaactacaaataacttgggtaagtcctgtctgtacttactctacccacctactagta
atttcctctgaaaatatatatttagctaacaagtcacgttcatttacaataaaacatttctctgaattagttttcttgcattattAAAGAAATGGTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAGAAATGGTATTGatagatggtcactgggggaccactgctcctccccgacagtatttaaataactggtataggctgcaagacttaccagatacctgctg
cgtgagcgaaggtttctgagtatgatctctatgccatccaactaatatatcaactgtatccttgatggaaacaaagagagagggggccaatcattttaag
atattactgccattcacctgtggaccatttcacagcaaaagatcctaaaaggagcatctatgttctacctacttgacattctagaaacttagaaagggga
gaggggcaggaaaataaaagaactacatttctgacaacaatgaaatagtttattttcttcaaatattttaaggtacgaacgtcagaaagaaaaatgcgg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 648 334 NA intron:LOC440354:NR:002473:7/27
0 chr19 58015176 58015481 1000942 0 - Yb8NBC548; RIP_Alu_chr19_058_02 GATTGGGGAGAAGGACCAAC AGCTCTTGACCTTGAAAACAGG SINE Alu Yb8 atttgccaagagacagcaaaagtgataaaagataagaaagcaggaggagaaaagcaactggagaaatgtagagaaaagctagatgtacagagagatgaag
gacagacagcaaggtagggagaggggcagaaatgtggaggctcatcagagtgagggagaggaggagggatgtggagccgggtcagacagagcagagtggt
gctggtggcaaggagaacagagggagaagcacagcggggaggacacctggggatctggggtgccagactgggtccagggggttataacagagaagagaga
atttaacagggagagcagagaggggagaagaggtggaaatctatggagattgaggacgatctaaagattggggagaaggaccaacAAGAGGTTAAATAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAGGTTAAATAAGttgcaaggatggagcccagctaatttttgtatttctagtagagatagggtttcaccatgttggccaggttggtctcaaa
ctcctgacctcaggtaatccacccacctccacctcccaaagtgctggaattacaggtgtgaaccacctcagctgtccacccatgtattcttgattgaaat
aatttgcttatgtcttagttctacagttgaccctgttttcaaggtcaagagctgtgtgtttacactgctgcattttataaatgttagtgtgattttcttg
taaggaagaattcaatgttgggagtcaatttcatcagaacctttcaaaagaattttctttaacccaggcatgtgaaagatgcttctctaattttaaggat
gggatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 588 267 NA intron:ZNF28:NM:006969:1/5
0 chr20 20223291 20223614 1000943 0 + Yb8NBC283; RIP_Alu_chr20_020_01 TGCGGACAAAACTTACAGAGG TGTGGCCTTAAATGTCATCCT SINE Alu Yb8 tgcagcaagagttctgggcttcactgggttatcctgttctgtcagcgactgtgaataggagtggcctgcactacaagggtaatttgtgtctgagaaaccc
ctgtttgagtgaattgtatttaacatgaatacaacatattttgatgcactctcagttcccagatggacccctccagtgatgctaatgtggtgccaaatct
ccttcaaatggacactgctccttccaaagttaagatcagccatcagtgcaacctcctcatcgctttctctagtgtagctgcttctggactctaagccctc
atttctgtaaggccctgtatgccaggattatgcggacaaaacttacagaggaggccaaaatatgataatgcagtctttacgtttaaaAATAATACCAAAA
GGTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAATAAT
AATAATAATAATAATAATAATAATAATAATACCAAAAaatgcaacaagtccataacaaaaaaaatcactaaaagtgatgctgatgacagactctcaagga
acaggatgacatttaaggccacaaaacgctcagactctcactgctctcagcctgcagcctgcagggctcctcaaggacttgacaagtcaccaccaactaa
gtgactgtgaccctcgtcttgaggtgcacagcctcggccacgtacatggaatccaagtcagccctcctaaacacaaagaagtccttgtaagctgaaggtg
ggggatttagtgagactcttggcaaagtcaagatttgttaaccacatgggtggatctcaaggtgtgcccccttgacacctgggctccctttcttaatcac
ttccaacaatgaaacctaaaagga UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 493 156 NA intron:C20orf26:NM:015585:24/27
0 chr21 41006073 41006290 1000944 0 + Yb8NBC280; RIP_Alu_chr21_041_02 TTTTGGGAACCCATTGAATC CAGCTTGCTAGGCATTAGGC SINE Alu Yb8 aggaggccttctgcatgcaactcttcctctgagcatctcccttcaggtaactcaacaggagacatcaaatgaggctctgctagttaccctctacaaccat
gtctttctgaaatgtttttctattttaaataaagtaatcagaaagtgccaactaacatcccatgtaagctccccaatagagcatgagcaataaataaaat
acaccaagatggaagaaagtactaaatctggattatcactggattaaaacatttttacaagcaataattattacattgaataaggcaatgacacaactaa
gactctcaggctgttatgtttttgggaacccattgaatctggacagtgacagtgtgtagtttgttttatgaaaacatactcatgtAAGAATCTAACATTT
CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAATCTAACATTTatctattatataaacattttgatttttagttaaacttcacatattcaatgggctcatagccctaagc
ctaatgcctagcaagctgtgtgtgtttcgtaaatgctagttggtgcattcactgtccccatattttttcattttcccatctcataattcatgtggtatgt
caaacttctgttgataatataatgtaaccttttgaagtatttttggaatttctattttacaaaattacaactcttttaagtagattggaattacctctca
cagtttaggaactgactgtatagaagttgagacagagagagagagagagagagagagaaggtggggggtacaggcgaaagcctttagcgaggtcctgata
tagagagatgcttacaaa UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 58 399 166 NA intron:DSCAM:NM:001389:1/33
0 chr4 57786270 57786537 1000945 0 + Yb8NBC96; RIP_Alu_chr4_057_02 GAACCCAAATAGCCAAAGCA TGTCCTTCCCCCAGTTTATG SINE Alu Yb8 aagatgtgctttgttaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaa
ggccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatctgctgacattccctccactattgtcctgtgaccctgccaaatctcc
ctctgcgagaaacacccaagaatgatcaataaaaaaataaattaaaaaaaaatctttaatccatcttgagttcatttttttatatggtgagtgataggga
tccagtttcattcttctagatgtggcttgccaattttttagcactgattattgagtagggtgtccttcccccagtttatgtttgtgtatgctttGTCAAA
GGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGC
CACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGGTCAAAtggttgtaagtatttggctttatctt
ggggttcttttttctgtatcactggtctatgtatacacttttataccagtaccttactgttttggttactattgccttgtagtataatttgaagtcaggc
aatgcgatggctccagatttatttttcaagcttaggattgctttggctatttgggttcttttttggtttcatattaattttaggatgttttttctaagtc
tgtgaaaaatgatattggcattttaataggaactacactgaatctacagattgttttgggcagtgtggtaattttcacaatattgattcttccaatctat
cagcaatgagatgtatttccatttgttcgtatcaactatgatttctttcagcagtgttttgtagttct UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 498 224 NA intergenic
0 chr22 49590898 49591032 1000946 0 + Yb8NBC126; RIP_Alu_chr22_049_01 AAAATGTCCCCTTTGTCCTTC CCTACGCAGAAACACCCTAGA SINE Alu Yb8 aggcacacagcttttcctctatagtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaa
gttttcatctacatgcatatcatttcttatggtttccaattaatcattccctcactatttttgggaaagacacaggatagtgggctctgttagagtagat
agctagctagacatgaacaggagggggagctcctggaaaagggaaagtctgtgaaggctcacctggagggaccaccaaaaatgcacatattagtagcatc
tctagtgctggagtggatgggcacttgtcaattgtggttaggagggagaagaggtacctacgcagaaacaccctagaacttctcttaaggTGCCCCAATC
GGATGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTCTTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCATTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGATGCCCCAATCatcattcactctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggacaaaggggacatttttaagag
aaacctggcaccataagtacagattagggcagagaaagacattcaaaagaggcagctgcagtagatacaaacgtgaccgctgtcagcctgcctggtatgg
cgggaaggaggctggtgccagagtggattcggatt UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 438 118 NA intergenic
0 chr9 10818107 10818426 1000947 0 - Yc1RG60; RIP_Alu_chr9_010_01 ATTTAGGGCTGTGAATTCCTCTC ACACTTTTGAATCTCAGTCCGATA SINE Alu Yc1 tatcctaaatatatatgcacctaacacagaagcacccatatttatatagcaagcacttggagaccttcaaagagacataggatctcacacaataatagtg
gaagacttcaaaactctacttacagcattaggcaggtcttcaaggcagaaaattaacaaagatattctggacctgaactcaacattggaccaaatggatt
tgatagatctctacagaattcttcaatccaaaaagccagattatacattctctttgttgcatggcacatactctaaaatcgaccacataattgaacataa
atcaatcttcagcaaacacaaaggaaccagaatcataacaaacacacttttgaatctcagtccgataaaaatagaagtcacaactAAGAAAGTCACTCAA
GGCCGGGCGCGGTGGCCCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAGTCACTCAAaaccatgcaattacatggaaattaaacaacgtgcttctgaataaaatttaagctgaaatcaagaa
gatatttgaaaataatgagaacagagatacaacataccagaatctctagaacacagcaaaggcagtattaagagaggaattcacagccctaaatgcccac
atcaaaaaattagaaagatctcaaattaacctaacattacaactgaaagaataagataagcaagagcaaatcaaagatagcagaagaccagaaataacta
acatcagaactgaactgaaggaaattgagacagggaaacctattcaaatgatcaatgaatccaggagctgtttttttttttgaaaaaattaataagatat
ataggccactagctagacta UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 551 216 NA intergenic
0 chr1 156443682 156443993 1000948 0 - Yc1RG75; RIP_Alu_chr1_154_01 AACTCTGTTTTGCTGCATCCTAT ATGCTCCGGAATAACTATTGAGT SINE Alu Yc1 ggaagatttcaataacccactttcaacaatagccataccatccagacataaaacaataataaggaaacactggacttgaactacactttagaccaaatag
acctagcagaaatatatagaacattccccccaacagcaacgaaatacatattattttcaaatacatatagaaaattctccagaatagattatatgccagg
ccacaaaagaagtcttaataaatttaagaagattgaaattataacaattatctttttggctacaacagaataaaactagaaagcaataacagaataaatt
atggaaaattaacaaatatgtggaaattaaacattatgctccggaataactattgagtcaaagaagaaattaagaagaaaattTAAAAATATCTTGAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGATGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGACAGCGCCACTGCAGTCCAGCCTGGGTGAAAGAGCGAGACTCCATCTCAAAAAAAAAATAAAAT
AAAAATAAAAATAAAAATATCTTGAGGCaaatgaaaatggcaacataacataccaaaatgtataggatgcagcaaaacagagttctaagaaggaggttta
aaggaataaattcctgcatccaaaaagaagaaagatctcaaataaacaacctaacactacacctcaaggaaactggaaaaagaagaacaaaataagccca
aagttagcagaaggaaagaataacaaaaatcagagtaacacctagaaaaacaatagataaggtcaactaaactaagagttggttttttggaaagctaaac
aaaattgacaaacccttagctatactaagcaaaaaaaaaaaaaaaaaaaacaaaaaaaaaagagcaagaaagaagactcaaataaataaaataaaaaatg
aaacaggaggc UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chr19 788878 789175 1000949 0 - Yc1RG94; RIP_Alu_chr19_000_01 GAGCTGACTCATGGCTGAAAC CATGACCGACCTGATGTGTATT SINE Alu Yc1 atattatttacattatataatatataatattttaaaatatacatatatattttttgagacagggtctggctgtgtcacccaggctggagtgcagtggtgt
aatcatggctcactgcagcctcgacctcctgggctcaagcaattctcctgcctcaaccccccaagtagctgggaccacaggcatgctccaccatgtccag
ctaaagtttttctttctttttttttttttttttggttggctgtttaattttttgtagaaatggggtcttgctatgttgccctggctggtcttgaactgcc
agccttcagggacgctcctgccttgacctccccaaatgctgggatcacaggcatgagccaccatgaccgacctgatgtgtattaaagaACTAGAGCTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA
AGAACTAGAGCTGTGctgtggccgggcgcggtggctgttgcctgtaatcccagcactttgggaggctgaggcagatggatcacaaggtcaggagttcaag
accagcctgggcaacatggtgaaaccccgactctactaaaaatacaaaaattagctgggtgtggtggcagatgcctgtaatcccagctacttgggaggct
gagggaggagaattacttgaacccgggaggtggagggggcagtgagctgagatcgcgtcactgcactccagcctgggcaacagagcgagacaccgtctca
aaataaaagggttattctcattcaacaaaagtgctgttggtttcagccatgagtcagctcatgctgaggcaagctgtttggcttgcagtcctcagtttcc
cca UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chr21 40672353 40672689 1000950 0 - Yc1RG97; RIP_Alu_chr21_040_02 AAGTGCACACTTTGACGTTCAC CCTTGATTGGCATTCAGGTTTA SINE Alu Yc1 aaatacattttaactacccaagaagcacattaatagagtcttcttttaagatactcaaatacgtgacagtgggaaatgaaacataatttctcctcccctt
cctctaatccactcatgatttcagaggcaaccacagttaacatttgggcagatatctgctgatccaggcctctctgttcatttgcatacacaaatttatt
catataccactgcctttggtacataacattacagattgttatgtaaccactttagactatgtagtggagatttttctgcagggtatgtgtacatatacct
tactgtcttttatgtaactgcagagtatagatgtaccctaatttatttacttatttatcccttgattggcattcaggtttatgtATAAGTTTTCATTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGTTTTCATTGTTaaattatgcatccgtgcatttgggggtgaacgtcaaagtgtgcactt
ctgagtttttccataggataatctttgacgttgcaagagggattgaaaagtatgcaagtctcacacttgaaatatactggcaagttgcccttcaaaaatc
aaaaggcttcaccaatttacatgcccacctatagaggtttttatttcccataccttttgtcaagaccacttattttcaaacattttattttttgttctaa
tctcctgtatgaaaagaatctctcattttaatttacattgatttgttcaagttctaagtaaattttgttcagcaattaattaaaacgtaattcatttcac
ttgtgaaaaggtgacatttttgcaatattaagttgac UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 441 88 NA intron:DSCAM:NM:001389:3/33
0 chr20 34722363 34722677 1000951 0 - Yc1RG101; RIP_Alu_chr20_034_01 CCAGCCAAAGAGATTACCAAAA GTCCAGTCCATTTCTCAAAGAAG SINE Alu Yc1 attcttaattaaatgactccatgagagaaaaatgagaagagttcaactttggactggatagccaaagaccttgagatagaaaagagtgaggatataaaga
atggcaaacccactaaggaaagaggtgaaaagtgaggtaagggaggtgcccagggcttagtcattagaaccagttgtactcagaagccattaaaagatcc
cagcaggagaggacccacggtccagtccatttctcaaagaagtaaggtaacctactttcatgttatatagctagtcagtaggaagacttagattcagctt
gtagttttttaaagacacgtaacagattcagaaaattagataagtgaaatttttagatctgctcagaaatatcaaagtatatcatATAAATATATCTCCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACACAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATAAATAAA
TAAATAAATAAATAAATAAATATATCTCCCactatgtattttggtaatctctttggctggctcagccttctccagactgagctgttgatcttgcaagatg
attctcataccgagctatttcgttttttttcctagcaactcataaaattattttcttctctttttttaaattttaggtcgaatgcaattcccgcctgaac
cctataaatacaactttgctaaaggtaatgtgccttcttccctcacttccaacccttatatgtgcttcagattaatcatattttctggaataattgctta
gaaaggagcaaagcttccctctctttggttatctcattctcttctttttctttgagacagagtcccgctgtgttgccctggctggagtgcagtggcgcca
tctcagctcactgca UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 541 235 NA intron:NDRG3:NM:022477:11/15
0 chr9 13830788 13831082 1000952 0 + Yc1RG103; RIP_Alu_chr9_013_01 GGCATTTGCATTCTGATGCTTA GACATGTTAGAGAAAAGGTGACATC SINE Alu Yc1 acgagtacgtgtctgtatgcgtaacaagtaggttactgacagacatgtcaaaagagatagataatgaaaatacaatggccacaatttgaaattagatatg
caaattaaagccatttctccctacctaggaatttttctgagttgctgagaaaatagcaaaaatcggattgggaatagttttgctttattttcaaaattat
ctgtaatatttcttctatttattgtaaacaccttaatgataggtagaatgccatttaagcactttgaagtcccacaatgtgttattgaagctaacatgaa
aatattgcttaaatgctaattgtgtttgtggacatgttaagtttttaagaaacagaaataagcaggcatttgcattctgatgcttaaaaacCCCTGTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACCCTG
TTTAgtgttttaatctaatgttgatgtcaccttttctctaacatgtctattccaactaaattcatattaaatttcaaattcataagacaatgcagaaagc
acagggtgtgcttgtcacacgggtggcttcaggaagagccattttaacctaaaacctgagagattagtctagacccagataaagaaaaaagacagaagga
aaagacagaaacaaggaaagagggagaaagacagggaaggagggagagcaggaaggagggagagaaaggaggagggagggaagaagaaaaaaaggaagaa
agaaaaggaagaaggagggaaggattccacttttccagactcctgaggttggaggaaaggaccttccaccagaagtttgttccttatgtatccat UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 383 79 NA intergenic
0 chr6 2004660 2004955 1000953 0 + Yc1RG139; RIP_Alu_chr6_002_01 CAGAGCTCATTATCATCCGCTT GGGGCAGTCCTACTTTCATTTAG SINE Alu Yc1 ttagctgggtgtggtggcgggtgcctgtaatcccagctacttggaaggctaagccaggagaatctcttgaacctgggaggtggaggttatagtgagccga
gatcacgcctctgcactccagcctgggcgacagagtgatcctctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcatcatgtccagtgtttct
ttatgaacccaaaagaggtgtatatttgaaaatatgtaatttatttgaactattgtttttttaatttgaggcatattaaaaatctgattagaatattaga
aaatatttcacagttttgcctacagagctcattatcatccgcttaagtgatgttttagaaaattattcacttatttagcaagacttAAAAATGCACTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATGCACTACTgttcaactcctaaagaaaaaaaaatgtatttaatccttaaatactttttaaacttaccaaccccaaatatataataaataattctgacag
ggcgaagctcagagacactggcccccaaaaatttgcatagtaataaatatagtcttctaaatgaaagtaggactgccccattctcaacattggtattaga
atctaccttttgaatttctttacatttatgaaataagctttattaacgaaatgacaacaaataatataaccacattttcaaaattaaaaaaaatacataa
gcaaataataaacctccctcattttttcactaagctacgttttcctttcttcaaaactgttctctgtagtcattaaaccacagaagggacatcagt UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 557 247 NA intron:GMDS:NM:001500:4/11
0 chr7 52770360 52770650 1000954 0 - Yc1RG197; RIP_Alu_chr7_052_01 TGCCTTTGTAACTTCACATTCG GTGGTGAATGGTTTGCACTTTA SINE Alu Yc1 ttcagcttctgcatcttcagggaggagttttctgaccacttaattgaaaacagaacctcctaaataaccccttcattatttctattgcaaaactctgttc
atttccttctccacggggatcactggcttgtaaaggtttcttttcttgcttgttgtcttgttcattgtctgtcccgtccaatgtcacttaagctccacaa
cggtgtggactgatgatatctgtcttcttacttgcatccatccccaaaatctagcatcgtgcgaaagagacaggaattgctcaaggaatacttgtggaat
aaacatgtatgtttgcttttgtttgaataagttacatgcatttgccattgtaaactaaactggtgtggtgaatggtttgcactttatttaagAAAAATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATGAa
ttaggctattcgaatgtgaagttacaaaggcaattacctttttctgctacaagaaaaattccttcatccttctcttatatatgattgaaaatatattagt
aaagccttcttcgcttttccttgcccaatatgaaggaaaagtctcataactgaattctaagcaaatttttgcatatccttcaatttggaagtttctctcg
tacatagaattgtaaactgaattgggtttgttttgtattcttagactgtaaataaggccagaaaataataaataagtaaataatgaggtggaaagaaaca
cacaagtaaaaggaaaatatgtgaggataggtgtctggcatgaaaaatcctgaattttgtaaaggataagtgagaatagagggcatttctc UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 56 368 69 NA intergenic
0 chr16 80721974 80722174 1000955 0 + Yc1RG203; pAlu16-81903593; RIP_Alu_chr16_080_01 CACGTGTGTATATATATGTGTGCGTA TGGACACTCTATTCTGCTCCATT SINE Alu Yc1 ggtggggggtgtttgggtcatggaggtggattctctcacgaatagcttggtgctgtccttgtgataatgagaagttatcactctgtgtatatatgtgtat
atatacacatgcgtgtgtatatatgtgtatatatacacatgcgtgtgtatatatacacacatgtatatatatgtatatatgtgtatatatacacacgtgt
ggatatacacgtgtgtatatatatgtgtgcgtatatacacatacacacacacatatatgaaattgtaaattacctagagcactcaaaacaattttgaaaa
gaaaggacaaagttggataaatacactactgtagttcaagacttaatataaagctgcagtcatcaagataggtaaatattagtgtaagAATGGACACATG
TCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGA
GCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAACAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGACA
CATGgataaatggagcagaatagagtgtccagaaataaatccacagcagcgtaatcagtaccaaggataatctgtagggaaaagtgtggtgttttaacca
gtagcaccagagcaactgaacatttgtatgaaaacaaaacaaaacaaaaccaaaccaggaatctcagccctttacttacaccataaacataaataaactc
taaataaagtatagacataaatgtaaaagttaaacctatacactttttagaagaaaactgtcataaccttgaggtgggcaaagataagaaacaaaatata
catcataaaaaatcctgacaaatcaggcttcatcaaattaaaactttctgcctttggagagatagcactgcaattacaaaaaggcaagctat UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 59 524 220 NA intergenic
0 chr12 78231799 78232103 1000956 0 + Yc1RG207; RIP_Alu_chr12_078_01 AGAACAATACTTGGCACCAGAGA AGTCATCAGAGCAATGCTTTTCG SINE Alu Yc1 gtaccaagtttttggtccaaattgtgtaggataagttaaccttaaattgcattctattaaccaataagagggtatttccgtaagcatagttatgttgaaa
tacagttttaaaaagcaaaaaaaaaaaaaaacaaaataaaagatagacctgctaagcttagtcaattaaaaattaatggtgagacagaactacagggtag
attaaagctcagcctatatgcatcaccatgactccgcttactactgatgtctccttcggcttgttgcttaatcctttcataaaatgggattagtatttac
tcacctccatgagttgtgacacactctaaatgagataattaatgtaaagcacttagaacaatacttggcaccagagaagctctcaaaaaaatATTAGCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTAGCGGtttttgttattaaaaacattggtcagagcccttatttccttgccagccgaaaagcattgctctgatgactagatttacatccttcct
tttttgaggacagtgggacagcctaagtgttcagaaggcattgtcatacatggttttaataaaaaagtggatatctgagcctagataccatgtgcgagag
tctgtgggatgtgaaaagattgcacaaagacgaacccagtttaaggctcagcacgtgtgagtggaagatagtgctaccatggtgtgacctcagtgattgt
gcaccaattaattcctctaagctctgacaccccacaaaggaactcaaagtttcaggctctgctaaaataagacagacaatagcaagtgttggcaaagatg
tgaaa UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 63 426 113 NA intron:SYT1:NM:001135806:7/10
0 chr14 85412604 85412909 1000957 0 + Yc1RG279; RIP_Alu_chr14_085_01 CTTTGGACCATAATTTGAGCAAC GGGACTGGGATAAGAGAGTGAAT SINE Alu Yc1 attcatcaacatcatgaataaccatagtaaatagacatttagagccatgaatggacttgctcaagagagcaattaaatcagtggcccctgggcttgatgt
tttatttcctttgaaaaatattgttgaatccttattatgtgtgtttactgtaaggaatacaaagataagaaagacaatttcaacctcaaaacaatgcatg
attctgtgagagtgaaaagagagggaacatcttgtgcatgaataataaagagaataagccaaaaagcaggaggggactgggataagagagtgaatgctga
gcctatgagtacacttgttccaatttcatattcaaacctaaagttgtgctcctcctcctaaatcatctcccagtgattttcttgcAAGAGTACTAGTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACAAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTACTAGTTCCcctggaggtagacagaaggactgacgctgtggctcatattaaatcctgtcccagctcctgggtaaaaagagcaatttat
ctgagtttagggtagtgttgctcaaattatggtccaaagtcttctgcctcacagatactcagagtgccttttaaatgcagatcagtttcaaaatgtatct
cagttgaaactgatcaaatgtatctcagttaagatacagatcaaatgcatctatttctaatctgaatctcttgggagtaaaagccagagcttatatttga
aaccatgtcctcaggtgattgttttacccaccaaaatatgcaaatcaatggtgtggggcaagcaagaattacattgccagtgatttaaatgagagtcttg
gttagg UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 53 567 246 NA intergenic
0 chr13 75209609 75209925 1000958 0 + Yc1RG345; RIP_Alu_chr13_075_01 GGCAAATCATAGATTTCATAGGG TTGGGAACCTCAACTAAGAGACA SINE Alu Yc1 gaatagagttgttggagatgatataactagttataatgagctcatactggggtaaggagggcccctaatcttaatatgactggtgtccttctaaaaagat
ggcctgtgaaaacacagacacacaggaagaatgccatataaagataggattggagtgatgcatctacaagccagagaacacctgcgattgctggcaaatc
atagatttcatagggagtgtggctttgctaacaccttgattttggacttgtagcatccagaattgtaagacaaaaaatctttgttgccttaagccacctg
gtttgttccaaaaggaacaaagtaccaaatatagctctaggaaattaatacagataggtacatgttttagttaataccttttttAAAAAAAAAAAAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA
TAAAATAAAATAAAAAAAAAAAAAAAAAAACTTtttactttgaaataaatatagattcacaggaagctgccaaaaaaaaaaaaaaaaaaaaaacacagta
caaaaatgtcctctgtactcttcacccagttttccccatttccagcagaatttttttggtgtctcttagttgaggttcccaaagaggaatctgaatggat
tccttttctttgaaggctacagatatcccaggtcactggccagcctgtggatgagttccataagaagacagtcgtcttggccaaatgagctgtggtcagg
agtgttgttttttttttggctcattcagttcaggttgacgtgggtactgtgaaggaggtttgtgtaaggtagattcaccaaggcgattcaaatatagtaa
aaatttctgtgtaaggg UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA NA NA NA NA intron:LMO7:NM:005358:4/30
0 chr7 42393477 42393762 1000959 0 + Yc1NBC01; RIP_Alu_chr7_042_03 AGTACGTGAGGTTTCTATGCCTTG GATTTGTCCATAATAGCCCCTAACT SINE Alu Yc1 tgttttattaagatataatttacatgacataaaattcaccatctaaaggcacacaattcagcgttgagtagatttaccgagttgtacaaccattactgct
gtctaattacagaacattttctccataactcacttaaaaaagaaagcaacagaaatgtattttctcacagttctgcaggtcaaaagtctgaaatcaaggt
gttggcaggatgatgcttcctttgcaggttttagggagggacccttccttgccccttcccagtttccagcggccactagcgatccttggcctgccttggc
ctggggctgccagagactgtggctccctccagtctctggctctgttgccacatggccttctctctgtgtgtctctctctgagtctTCACATGGCCTTCTT
TTTTTTTTGAGATGGAATCTCTCTCTGTCGCCAGGCTGGGGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCT
TGCCTCAGCCTCCCAAGTAGCTGGCACTACAACTGCATGTCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGCTTTCACCATGTTGGCCAG
GAAGGTCTCAATCTTTTGACCTCATGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATACAGGTGTAAGCCACTGTGCCCGGCCTCACAAAGCCTTCT
Tctaaggatgccagtcattggatttagggcccaccctaatctagtatgacctcatcttaccttaactaattacacctgcaaagacccttattccaaatag
gtacgcattctgaggttctggttgggcatgaactttggggtacactattcagcccagtatagacacatgagggggattcactttctgttcatgtgattcc
cttttcagtacccattttgtacatgtaggtttgagagggtccaatgcagtatggtgctgtttgctgcctaagtcatgaattatttgagaaattagacaaa
aatattagctgatggaagtcaaaatatcatctctttttactgatagtgtaacttgaagaatgtagcttatatctggaaccaagtga UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 481 159 NA intergenic
0 chr7 33370072 33370384 1000960 0 - Yc1NBC02; RIP_Alu_chr7_033_02 TCTCTCATGAACATAGATACAAA CGTGCATTCTTGAGATAAAT SINE Alu Yc1 ggggaaggggaggggagaggagggggaagggggaaaatataaggaagaacatcaaaaatagaactgattaagcagaagaaagaatctgtgaactcaaagt
cagattattagaaaatacagtgagaggaggaaaaaaatgaaaggaaagaagaaaggctgcaagatttagggaacagaatcaagcaaaacaataagagaaa
accttccaaatctggagagaagtataaatatccagatataagaaactcatgacatcaaaacataaaatgtggggggatggagtaaaaattattcacataa
ctgtagaaaaaaactaaattacaaatcaatttctctcatgaacatagatacaaaaattctaaaatacagtttggcaaattaaatcTAAAAATATAGTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAAA
ATAAAAAAAAAAATAAAAATATAGTGAAaagataatatatcatgaccatctataatttatctcaagaatgcacggttgggctaacattaaaaattaatca
atgtaatccaccatatttaatcaaataaagaagaaaacgataagaatgtctcagctgatgtagaagtagtcttgaaaaaatccaatatccattcctgatt
acagtctcagcgacctaggaatagaagggaacttcctcaacctggttaaaaaaaaaaaaaaaatctaaaaaatacttatagctaaaacatacttaatggt
gaaagacaatgtctgttctcaccatttctattcaacattatcccagaggttctagccaaggcaaaaagcaagcaaaaacaaacaatccagttggaatgga
agaagtaaaactg UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA 60 443 102 NA intron:BBS9:NM:198428:16/23
0 chr14 34375055 34375372 1000961 0 + Yc1NBC09; RIP_Alu_chr14_034_01 GCCCAGCTGGAAATAGCTT AGAAATTCTGCATGTGTCTCAG SINE Alu Yc1 gtttctctcttgttgccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccg
agtagctgggattacaagcatgcgccaccacgcccagctaattttgtattttcagtagagacagggtttctccatgttggtcaggctagtcttgaactcc
cgacctcaggtgatctgcccgcctcagcctcccaaagtgttggattacaggcgtgagccactgcgcccagctggaaatagctttttatgaggatagtctg
gaatgtatataccttccgctaaaaagctatttttagtagccatttaaatttatatctcaaaaattcaatggaccaaaagcaaattatAAAACTTTCTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACTTTCTATAactgagacacatgcagaatttctacagggtatttggggtagaaggtaaatagttaacagcaaagggaaa
gaagatctagaagcctgggaagacctacttgaaataagagaccgaccctctgtttgggtctctaaaaattgaatatgctgaatctatagcatacttcaca
actgctccccattctgcctcattaacctttattttctagtaatacaattgcaagaatatttataaaaaatactatgcttggacaattaagtcaatatttt
ctaacagtgaactaatttgaagtttagagttaaaaaacaaaaaccttaaattaagtttatgtgatatctcattttaagtggaagaaaccagagcatttga
gcgagtcagctattcaca UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 63 490 159 NA intron:BAZ1A:NM:013448:3/27
0 chr7 83566310 83566623 1000962 0 - Yc1NBC53; RIP_Alu_chr7_083_02 AAAGCTATCAACCATGCCAACA GAAAATGCTATTTTGGGGAATG SINE Alu Yc1 cgtaaaattacaattctcaaatgaaaacatcaagatatctaaataatagccagatctcataagccattagatgaaatataactgaggtgatgacactgtt
taaactcctcattaaaaaaagcgtttatgattcttttgtgaattagtcaaacttgttttatagcatattgtggttcatgcacatttaattttaactcctg
agcttacaaatcagctgcgttaagctgcatttatgttgtgcataaaacattaagctactataggcaaagttatgtgagttttgcattgatagcatatcac
aaaggagagtttctccattactcgtaaataaagaaaatgctattttggggaatgtatatgtgaaagtaattcaaatgcacttttcttttaaaaaaAATTC
AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACACCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAA
AAAAAAGAAAATGTAATTCctgattaatctctggttattctatccaatttatcttctgctataactattgtccacgattgttgttattacttttattact
attagaggctattattgttggcatggttgatagctttatcaaaattatataatttgattttaataattctgtgaaagaagcattatctctgtttctcaat
tgaggaaactaaggctcagggaagttcaacatgttacataacatcacacagccagtatatcatctgtcctcatgcccatcataacaaatggcctttctaa
tggcatcaatattataccccattgagattatgctatatgatgtgcttattaatacttagttctaaacactcaaaactttgaatttcaagttaaatccatt
acaatttgcattat UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA 62 505 186 NA intron:SEMA3A:NM:006080:4/17
0 chr10 10748550 10748858 1000963 0 + Yc1NBC60; RIP_Alu_chr10_010_01 GAAACCGCCAAGATTCTCACC TCTCCATCATGATTCCCAACTGA SINE Alu Yc1 ataattttaacctctcccttttccagatgaaaagtctcagtaaaaaaacagctactgaatgtgcagcatttgtcagatgccactagtcaactcacttcag
gtcggggtgctgtgttggctccgtgtctctcaagaggaaataagtcagtgggggcaggttgtgggttggtgcccagcatagcaccaggtgaccacacacg
ctcctccacctccaacttattaatgatctcaagcacttcacaccatttctgcccttaagcttagttgaagaatcaaagatgagtctcaagttggtagtgg
aagtagcaaacaaggaaggagagaaggccctgaaatcacctatctcagaaaccgccaagattctcacctaaggaggatgattatgtgtttgtAAGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAAAAAAAAAGAAAGAagatggtttaacctttagcctattttcagtggttggcttggttttgcacacacattcacacacacatacacatacgttcatgc
acacaccacagcatacatttataagccaaaggccctctaaaataagtcagttgggaatcatgatggagatgtgaataatagaagaaaaaatgattatgca
tcccgggcaatccaaaaggttcctgttcatttggaaatattttaagatgtcagggctgaaaggcaccatgctctttgaataaatgaattggtctcctggc
gttgtgtctatggaagctatagttattactactcagacagctgactttttgttttaattatgcaacagaaactggaaaaatgtttggggtcaactttcta
ttttagtga UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 522 205 NA intergenic
0 chr6 91294312 91294617 1000964 0 - Yc1NBC63; RIP_Alu_chr6_091_01 GGTACTCAGTAACACATCAAGA AAGCTGGGTGGTGGGTTCAC SINE Alu Yc1 tacctgtcactgtttattatcctgaatccattgtggcttttcaagacctaaaatcatataattttagcactatatggaacacttctcatcacattcttaa
cccagccccaacccctctccagataaagagaggttgaagtgatctgaagcagacattacagcataattagaactcacatacgatggattctactcaaagg
tacttttgtattgcatttcattttacttgttgcagtcttgaatttgagtgtttgtatatatgttgaagctagatataagattcttcatgaatttatttta
agttttattttctataactccatgttcttttttaagtctcttctttggtactcagtaacacatcaagaaaaaaaaggtgctttttAAAAAGTCCTTATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGTCCTTATGAaacccattttagtttctgtgtcctttgaaaggctttaatatatgaaatataaatatgtagacaagaatgtatataatgt
ataagttatgaaaataaaatgagcacttgtgaacccaccacccagcttaaggaatggaacattagcaatcccagtgggggttggtccctgtgtgttcctc
gcctgtggccttccctgtcatttccccaccaaccctcagtgccatgttctgtcatatgtcatgtttccagatatcataaataccttttatctgattaaga
agtcctcttcccactgggcacaggggctcacacctataatcccagcacgttaggaggctgaggcaggaggatcgcttgagcccaggagttcaagaccagc
ctgcac UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 502 181 NA intron:MAP3K7:NM:145331:13/17
0 chr20 26097021 26097313 1000965 0 + Yc1NBC64; RIP_Alu_chr20_026_02 CAGATCCTGGTTCGTAGGAGGTG CAAGCTGTGTATTCTTGATACTGC SINE Alu Yc1 ttccacgtaacttagtaaaaatctctgtgaatagttccccaaattctgcatttttaacaagctccccgcttatggagctgtctccttgagtgcaggaagg
acaggctgttttactttataactgggacagcaagtacagatcctggttcgtaggaggtgcctagaaaatacatgataggtaattagttaaattgaattaa
taactataataagtagtaaaacttaataaatgctagtatttttttaattgtatatatctactactagatacaaactttgagtggtggtgttcatttacca
aagttttggtttttacacttttccaaaaaatgtcaattgctattctgtactctatacaatcagaaggaagtcagtttgagcacatAAAAATGACATAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATG
ACATAATAttctgcagtatcaagaatacacagcttgatacttcagatttatttttatctttgaaagatattaataaaataagtaatttataaaaacaaag
agattttaataactgaaacaaaaatactaattatgataagactaaacatgtaatgtagctgtaggttgaaataaacttgaaacactctagtgtctgcata
ccttttgctttccccaagaactatttctgcaaaatattcactagcctgcagagataacccacatagactatgttattaatatgcaatcttccttcctgaa
acagtttacatatgcagtatatagcatctagaccttgtaattgaattttcaaagtttgctgtggtttgggagctgcatatgggtcagtaatca UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 600 292 NA intergenic
0 chr20 46978148 46978441 1000966 0 - Yc1RG95; RIP_Alu_chr20_046_01 ACCTAACAGATGACCTGCTGAAA GAGGTAGAGAAAGGCAAGCATTC SINE Alu Yc1 cttcactcatgttggagacttacaaaaaggtctataaaccaactaataggggaggtagagaaaggcaagcattcagttccttttcctttaaagactgcaa
caccggctgggcgcagtggctcacgcctgtaatcccagcactttaggaggctgaggcgggcagatcacgaggtcaggagatcgaaaccatcctggctaac
acggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggcgcctgtggtcccagctacttgggaggctgaggcaggagaatg
gcgtgaacccaggaggcagagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactggctcAAAAAAAAAAAGATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGATTGCaacaccaatgcctctgaatttcagcaggtcatctgttaggtgccaggtactgtgccagttacttactgcactagtccatttaacctttg
caataatcctgtgacaaaggtattactatctttatcaccttgggaaactgcggcccaaagagggatcactggactatcaataagcaaatcaaactttcaa
agtctcaatcaactctctgccaatcctacatataaatgcttttcaataatcaagaacaatccagttttttgatgctgcttccagacagataacctcctcc
tgaagaatccacagtggttttcaacaaaaagtaatcttccagggtcctgagtcctgttatttctcaaaatttttatgatacatagcacttataa UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 701 390 NA intron:ARFGEF2:NM:006420:1/39
0 chr19 13340571 13340870 1000967 0 + Yc1RG130; RIP_Alu_chr19_013_01 AGTAAGAGAGGGAAGCTGTCAGG CTATTGCAGTCCCCATTTACAGA SINE Alu Yc1 tgggcttgctctgtcacccaggctggaatacagtggcatgatcacggctcactgcagccttgacctcctgggcacaagcgagcctcctgcctcagcctcc
cgagtaggtgggactacaggcacacttcaccatacctggttccactaccatttttttcttgaggctattaactcaggtctgaacgatgacaacatcctat
gtttgtaaccactatggtatctactaggaaagtctatgatcaaaatgaaggttcaaacatatagcctgaggctttgcttcttgattgcaggaacttccca
tggctcttgatgggtggagaccacagtaagagagggaagctgtcaggatagctcgaggggccatgccactccaagggcttAAAAATGTAATGTGGGTGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGTAATGTGGGTGCTaacagatgcagtgtggtgcagtggttaaggtgctggatactcttggtgtctggccaagatcccattttctttctggtgta
cccgccctccagctgctatggatgttggttgctaatgcctcccagctgcctctcttcttagtagaattgcccttggtgatcaaaagctatctcacctggg
agctactgcgtctctacctcccatccacagtgactgactatagaagtacaaaaggccggcatccttgccatgcattggaggacaactctggtgtcacaca
cactccagctgaaattgcgtccctgctctatccattccccagccccaccctgctgatctcctgctgtctctcccaagagccgtcccccaataaagcaggt
UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 59 887 568 NA intron:CACNA1A:NM:001127221:4/47
0 chr21 23750832 23751057 1000968 0 + Yc1RG140; RIP_Alu_chr21_023_02 CTGGTTATCGATTACAGAAGCA TACTCTCCCACATCCCTTACTTG SINE Alu Yc1 tgattaaacgaaaaaaattacgcttttaaagaattaaagttagttttattctgaagtcttactcaggactatagactgaaccagcctctaaaagagcagc
catttagaaaggttctattagttctagcacagtattttagccctgtttatggacaggtggtagaaattttaaaaattttattagaattggttaggaaaag
taaacagatactttgtgcaaaaccacattcaactttctcagacattccattaaagtaaataacatcaaagttttggtgtaggagtaggagtagatctggt
tatcgattacagaagcataatcactaacatcaacagatgttatctcctgtataggaaaaagcaaagactacatcatttactgttcAAGAAATATAGTGAC
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAATATAGTGACtcggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggtcgaggcgggcagatcacgaggtcaggagatcg
agaccagcctggctaacacagtgaaaccctatctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcgcagctattcgggag
gctgaggcaggagaatggtgagaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagaacgagactcagtc
aaaaaaaaaaaaaaaaaaaaaaggaa UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 58 770 451 NA intergenic
0 chr2 150467556 150467867 1000969 0 + Yc1RG148; RIP_Alu_chr2_150_03 GTTGGAAAGTGTGTCCTAAAGCA ACACGTTCTGAAACATCCATCTC SINE Alu Yc1 ctgttaagagactgatcaagtcttaggtgactctccaggccaaaaggaattttaagccaccatgtagtgctatctcccttactttgtagcctctgaatta
ggggcacatacagagcaaaagtcagattcctgattaataatccaggaccctttttaaaaaaattttatctcatcatgcttacactgtattctgatatatt
gtgtaccataaatataggaaagtacagggaaaactgaaataattatgtaaaaatattctagcttttgcagttgctaggtatactttaatttaggcaatag
acatgcttctaaaacacctaagcaagaaacacgttctgaaacatccatctctactatctaaagaatttcgctaagagaaccaatataaaacAAACAAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAAGCAaaaataaatatgaaactggatgctttaggacacactttccaactttattccaaggacaaatcgcacccattcaaacctc
cttttctctattcttctctcttcttctcccctttgtgaaaaatatctccttcagcacttgtgaaaactttaaaatttgtgctccaatttaaaatttgatc
attgtttgaaagtatttaattttttaaaggaaaatacttattggactaataacaatattagcagttgttctttactgtgaaacaattgagatagttgttc
ttgacacgtggctgaggctgtctatactgagagagtgggactttgattgcaagaaggggctgcttatgagcacattttatggctaatagacatgaaaaag
ggtctaggaaaa UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 58 436 115 NA intergenic
0 chr2 171048135 171048403 1000970 0 - Yc1RG155; RIP_Alu_chr2_171_01 CATAAGTTAGCCCCACTGATATTTG CCCAGCTTACTCTGGAAATCAG SINE Alu Yc1 ttttctgtaagtcatccctaaaccatcgtgctcaggggtaggcagatatttactgtaagtaactagagcatgctgtaccagtcacggctaagaggacaac
tgctcagctgatggactgggtagtgttctcctagagcaccatgttgggagggattccaaggccacatcgaggctgtgaagaaaacatgccttgactgaag
agccaggtctgcagctagggttgaagagtgaagctgtgctcatacccatgtatttgccatccccatgccaggaggtttcctcacattctctttcctcttt
ttctccattttgttattttcttcattgctttttctttttgctgcttcattgttattatctaacataagttagccccactgatatttgttttAAAGAATCC
TTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATCCccaagcaaggagttttaattca
gccactgatttccagagtaagctgggcaagcaaatccaaatgtccagatattatttaatgccttcataatgtcttttctcttgttttcctttattatttc
ttctttcctacaactgaactaattcatgaggttgcttataacacagaacatttggaaaatcagaaaagatagcctgggcttattattctgccaccattca
gtgttttggagaacagtgaaatgaatattaattcttgcatccactttttcaaaccaccactacagattcctggctaaatctacagagctatcaactacag
aaatgatttttctaattgactatgtgaaaagctgctgccagcagcatgggctccatgaaaaaggcaggg UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 62.5 364 86 NA intron:MYO3B:NM:001083615:25/34
0 chr2 34497153 34497441 1000971 0 - Yc1RG158; RIP_Alu_chr2_034_02 CCATCCAGGAGTCTACCAAGAGT AATGCCGTTTCTGACACAGAG SINE Alu Yc1 ttactggcttattataaaagatatgataaaggagacagatgaacagccagatcaagagttatataaggcaaggtctggatggggtgccaaccacaggaac
ttctttccttgtagcattgggtcgcagcagcctcttgccatgtgggtgcttgccctatcctttttaaataattgtggacaccagacgctctcagaacctt
gtattcttgagattttaatggaggcttcatcacctagacatgattaattatttgacttcttatcagctcccctcccctccctggagaataggggatggga
atgaaggttccaaggttctcatcatggcttggtctttctggtaaccagccccatccaggagtctaccaagagttacctcattAGAAATTCCAAGAGAGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGACGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAATTCCAA
GAGAGTTaggagctctgtgtcagaaacggcattgaagaccaaatgttagaacaaaagatgatgctggcactcctgttacttgggaggttacaagggtttt
agaagcttgtgtcaggaaccagtagcagagactgacctacctacctaccttccttccttcctccctccctcctttcttcctttcctttcatttcctttct
ccctctctttcttttttcctttctcttatttttcaatgatattagcgaatatcatcaataatccacaacaaccgtctttatatattagaaagttattaag
ctccttgtgataaataaaagtctcccagaatttcagttcttcccgaaagctcaaattttatcattgtcaatgaacactgtcaattgttt UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 63 469 162 NA intergenic
0 chr6 121361006 121361315 1000972 0 - pAlu6-121254345; Yc1RG258; RIP_Alu_chr6_121_01 CCTGCAAAGTTAACCGTCTATGA GCTCTGAACAGTAACTGGCACAT SINE Alu Yc1 gaatttagcattaggataggtttttatatattaggcagctggcttttgccatccagagtgtttcatagaaatcatcccagcccaaattaatgaagaaagg
acagattgtttagtaaatagtttgcaaaaactggatcactccgtggagcaaaatgaaactaaatttctgcctaacactacaaagttggatttcaggtaga
ataatcctgcaaagttaaccgtctatgatataggagactatttttgtcacctaaggttgaggaacgacttcataaagaaaatctgaaaagcacaaatcat
gagctgaaagaatggatttatttgattgtgttaaaattaaagatttcttttaaattacgggtgtcatgaacaaaataaacagatatAAGAATGGGAAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAACATTAGCCGGGCGTGGTAGCGGGCGCCTGTGTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAAGAATGGGAAAGGtatttataatgtctatatctgacaggagatatatgtctacaacacacagggaactttacaaataaataagaaaaat
ataggaaaaaacaataaaatataggaaaagtaggagcagactatttgcagaaaaattactcagttatcaggcatgtaaggggatgttcaatatcaagtct
agtagggataatggagaaatggaatatagtggacatacaatatgggatatgatgtggcagttagaagtcatagcccagctttgtgtagtaacatggagag
atcttatgaaataaggatatatgaaacatatagtaatgttaacaataatagaaaacacttactagtatttactatgtgccagttactgttcagagctcat
aacaaccgtg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 891 567 NA intergenic
0 chr9 72653432 72653733 1000973 0 + Yc1RG291; RIP_Alu_chr9_070_01 AACAATAGACACCTGAAGCCAAA TCTGTCAGTTTTGGCAGTATGAA SINE Alu Yc1 agataaatgagatgcagccaggaaaacaaaggatttgaaaacatgaaaggaaaataaaggagcttggaggagataatcagaattataggtagaagtaaaa
gagatgatggggaggaggcaatattggaagaaatattggctgagtattcctcggaattatagaaagataccaattctaacatgcagaaagttcagtgaat
tctaagcaggataaatgaaaagaaacctcacttacatacacatcacatgtaacaccaaagggaggggaaattcctcagaagtggctggaaataaagacag
atcatgtacaaagaatagtcattagactgaagacctactcctcaacagcaacaatagacacctgaagccaaaaccttccatgtgtcAAAAGAAATTACCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAAATTACCTgtcagtctagaattctacattcagcaaaactatcttttaaaaatgagagcagattatagatattttcatactgccaaaactgac
agagtttacttctaggcaccttcactgaaggaagttgtttttgttattgtttttgtttgtttgttttgagatagagtcttgcactgttgcctgggctgga
acacaatggcatgatctcggcttactgcaacctttgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccac
caccaggcccagctaatttttttgtatttttattatagacggggtttcttcatcttgtctaggctggtcttgaactcctgatcttgtgatctgcccacct
cg UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 64 454 138 NA intron:TRPM3:NM:206947:3/25
0 chr9 121396913 121397088 1000974 0 - Yc1RG348; RIP_Alu_chr9_119_02 CCACATGAAATACTATAGTGGAGT AGCTGGCTGTTGCTGTCACTA SINE Alu Yc1 ttctccataaaataaatgcgttgcagaagaactctgtaaacagcacatatcacgaagccatgaattcagatgcaacatgaggcgcaatttcctcccctct
ccgtaactgctttattctagtatttcttaaatatttcaacaatatgatcccacgttttatgccattaaatgtttagattccacatgaaatactatagtgg
agtattactaacagtaataataatagtaacaataaaaacagcaatgaaactgataataataaagattataggccaggcatggtggctcacgcctgtaatc
ccagcattttgggaggccaaggtgggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactAAAAATACAAAA
AATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCC
GAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAttatctgggctc
agtggtgcacacctgtaagcctagctactcaggaggctgaggcaggagaattgcttgaacccaggaagcggaggttgcagtgagccaagatcatgccact
gcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaatagtgacagcaacagccagctttaaagtgtgcttgttacataccta
ctgatcattgtattaagaaatggctatatgattatctcacttaatcatcataggggccctgtgcaatagaccatttttatgtgcatactacaaacaaaac
tcagagaggtcaagtaatttgcccatggtcaaacagctaagaagtagtaaagctaaaattcatatccaagcttttc UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chr16 69617819 69617820 1000975 0 + Yc1NBC23; RIP_Alu_chr16_069_02 TGCTCAGGTTAGGGATGTTAATGC TTCTGAGCTGCTGGGGGACT SINE Alu Yc1 ctcagcctcccaagtagctgcgattacaggcatgtgccaccacgcctggctaattttgtatttttagtagacacggggtttctccatgttggtcaggctg
gtctcgaactcccgaccacaggtgacccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccaaatttttgcctttt
atacttaaacatttaaaaatcatgcattaggaattaatatttctttggactcaaaaagcctagatttttataaagcagaaaggatcaaaagtgaatttac
agcatgaataggttatatagaagagtgctcaggttagggatgttaatgcattccagtctcttctcaattatgtagcatgatttagAAGAACATTCGGGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAACATTCGGGGAtgcttttagtaaagcttaagctgagtttagtcccccagcagctcagaattaatgccttcaaaaatatggacaactctt
gataaccacattataaatatgctcttccaacagctgtcagtgtcttgagataagggcctgtgttctattcatctttacatcctcagtgcctagcacagta
tttgtcacatggtatacacacaataaaagttggctgatcacctgaataacagagagaaggaacacattaccttttccacaatgagagataaccccccctt
ttgttgaactgaggatgcgttttacctgaaaatgctctatgaagaaataatctaatgaaataaagtggaatctgtgaccttagagaagctaagcaaggga
ctagctt Other - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 445 120 NA intron:HYDIN:NM:032821:20/86
0 chr17 15471490 15471789 1000976 0 + Yc1RG93; RIP_Alu_chr17_015_01 GGGATTCAAGTGTGGGTAGAAT AAAGGAAGGCAATATGATGTGG SINE Alu Yc1 tgcattttattgccttttatacaatgtccatgatctaataaggaaggtggccgggtgcggtggctcacgcctgtaatcccaggactttgggaggccgagg
cgggtggatcacgaggtcaggagatcgagatcattctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccaggcttggtgacgg
gtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggcggagcttgcagtgagccgagattgtgccactgcactcca
gcctgcgcaacagagcgagactccgtctcaaaaaaaaaaaaaataaaataaaataaaataaaggaaggcaatatgatgtggtggttAAAAGTCCAGTGTC
GGCCGGGGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGTCCAGTGTCattctacccacacttgaatcccagctctgcccctcactcaccatgtgaccagagtgaccttgaacaaattagctaactgccccgga
ccgcagtttctccatctgcaaaataaggatgatataagcatctacccaatgggtgttctgtgaggactgagttaatgtgcaggaagcataagaacggtat
ctggcacataggaaatacgcaagttagcaatttattatgataactctgcaatcttttcagccactctttaaggttcctggtcatccattctgggcacagt
gtgacatttacctgaacagagaggagaatggcactagaagatgagggagatttggtgcctaaaaattactacaaacaggcagggcgcagtggctcacgca
UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 377 63 NA downstream:TRIM16:NM:006470
0 chr1 70718794 70719108 1000977 0 - pAlu1-70330824; Yc1RG100; RIP_Alu_chr1_070_02 ACTTCCATGAGCTAGTGGCTGTA GATCTCTAAACGATAAAGGCTCAC SINE Alu Yc1 tttagaaaggcagcaaaaattatattttggcttttactctagatgcttagcatagttaaggcgacagttcaagcatattaagtgaaggtagttaaaatgt
aagaacaaccatcacaatctcttgcaacctaaatacactgtttaatgcttacatggaacaaaaccagtgtttttaattgacattttacacacacacacac
acacacacacacacatacacagaattttttaaaaaatcaaaggcaatcattctaaacgtactatggtagcatgttaaaaatgtaaataccaacgcataat
tttaaagaacacctcaaatgttctataattttatctttaaaaatttaaaggtagtatagatctctaaacgataaaggctcacttAAGAAAACATAACCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAAACATAACCATaataccactatcacaaaaaaaattaaaaacaatgtctttattcaatcatgatttgttttttaagtctcc
actctcttatacagccactagctcatggaagtgcccaatcactgtgtcccaaactactggactttcagaagttttcatgttgaggaggtaacagtcagtc
tctcctcttctctgacaagttctccaatctgttcaaacctcagttcagtattacctgctctataaagacttccttaattctcccaaacgcagttagtcat
ctcttcttgagggccttcatgatacatcattcatatctctagcatgtatctaaatatttggtattataattattcatttgattgtctttgtccccaaatt
taggcatgcctttaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 474 143 NA intergenic
0 chr16 816643 816958 1000978 0 - Yc1RG123; RIP_Alu_chr16_000_01 CACACACACACACAAAATTAGCC GTGAGTCTTGAAACGGCTTTTAC SINE Alu Yc1 gaggtgcttcagaaaacagacgcgaagccaggtctgaggcctggaagcgacggggtcaggcaggtggggagagcaccaggtctgaggcctggaagcgacc
tcaggaagtcacccggaaggcaggtggggagaagtcttcacacctggcctgagagccacatcctcagtgtttatgagcagaggtggagccagggccaggt
ctcccaaaaccacctcacacacgtgcacaggtacacgtgctaccacgcacagacacacgtggacacgcacagacacacagagacacgtgtgcgcaccctc
cgctccccgaaggcacagccgctcctcagagaacctccctcctcggcctggtgagtcttgaaacggcttttacattttttagtttAAAACTCACATTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
CAAAACAAAAAAAAAAAAAACTCACATTTCCccgaccctcttattctttttgtgagacggagtctcgctctgtcgcccaggctggagtgtagtggttgat
tttggctccctacaacctctgcttcccgggttaagcaattctcctgcctcagcctcccaagcagctgggactacaggtgccaccaccacgcccggctaat
tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttactagagatggggtttccccacgttggccagggtggcctcaaactcctgacctca
ggtgatctacctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgctcccgggccgacatctgtttttaaaattcaccatccacaggca
cagtggcgaccacagc UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 563 234 NA intergenic
0 chr9 3770633 3770942 1000979 0 + Yc1RG132; pAlu9-3770534; RIP_Alu_chr9_003_02 TAAAACCTCTAAACCCAGCCTCT AAAATCAGGTACTCTGCTACTTGC SINE Alu Yc1 tttgcaattggagttagggtcagatagttgagggtttctttcgttctttctttctctcttttgagatggagtctctctcggtcacccaggctggagtgca
gtggcgcgatctcggctcactgcaagctccacctcccaggttcatgccattctcctgcctcagcctcccgggtagctgggactacaggcacccgccacca
tgcccagctaatttttgtatttttagtagagacggggcttcaccgggttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctc
ccaaagtgctgggattacagacgtgagccaccgcgcctggccgaggttttaaaacctctaaacccagcctctttcagctactatAAAGATATAAAAAATG
ATGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGATATAAAAAATGtcttgtaccaattagattgtgttcagctgcaagtagcagagtacctgatttttaatgtcttaagttgcaattat
tttaaattttaatggataatctggaagtaggcattccaagtttgctttggaaattccatggtattataaaatatccagactctttagaatcttgagcttt
gtcaagggcagtatctctccttatgatcagaaaacatctgccagatcttcaagaaactcaatctcatatgacagcatcccaagtagaaagctggaggcag
ctacagagaaagtctttttcttcacatgcctctttgttattaggaaggaatgaaaactttttcccagaagccccaagaagacttttccctttatcacctt
agatgaattt UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 429 103 NA intergenic
0 chr12 26402305 26402619 1000980 0 + pAlu12-26411204; Yc1RG142; RIP_Alu_chr12_026_01 GCAGAAAAGATTTATCTGGGGTCT ACTTTTCATGCTCAAGGCTCA SINE Alu Yc1 gcactaagcctgagtgggcagtgccaaaattgagttgcagtgcacccagttgggaatgaaactaaatagctggtgtcagaccaggcacccaccctacaca
ccacctctggttgtggcccatgtggccatcagctgctgcccatggccagaggggaagggtgaccttggtggcaaaggtgaggaagctgcagggcggctag
ctcgggttgctgggtttacatttgctaactgttgctgctcagagacctataaatagtggacatttggttgaactattacaaagagagctacagaagctag
aatacacccagaaacctgcagctatgtacatatttaggatatgatcatgcaaggcagaaaagatttatctggggtctatggatAAAGAATAAAGTCGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGTCCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATAAAGTCGTTCttgttttcccttgagccttgagcatgaaaagtgtgctgctggactgtgatcttacatacattctctct
ttatttcttacccattctgcctgaagagctggcaacaatttgaaatccatcatcccggctgtgttttgtggattaaactacttattctcatatgttctac
ccatttccttgtcaggagtgaattctgtgtattacaaataattgatgatgttgggcacatctcagaacaaaaaaaaaaggcactgatatgtttttaatat
tttcctggcataaattcttaactcctttcctagcccagggggccttaagtgatccagtctctgtccccctcccctcccccatctgtggctgccacctgcc
accctcactgactct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 411 79 NA intron:ITPR2:NM:002223:55/57
0 chr2 81607124 81607420 1000981 0 + Yc1RG179; RIP_Alu_chr2_081_01 ACTGCTGTGAAATAAGTGGTGCT GCCAATGAGTGAGATGCAATAA SINE Alu Yc1 taaatctctctcatttggttcaatggccaaagcctaaatcaattaagagaaatttaggtgtataagtcatcctaaggtatagctgtacttaagtcatcag
ttagagatgaggaaactgaggctccaaaaggttaaatgacttaattgcaatctaagcagagttggttcatggtataggcaggcctagaactcaaatctgc
tgattttcagttctgttttcttagaaacaatactacctcctgtgtcctgattagaaaagcataagtcacgctccaaagtgaccctctaacatgacaaagc
ttacaataatctgcttagactgctgtgaaataagtggtgctaaaagatccgtcaatgggatgaaataaattataacataaactttaaaaaatAACTTGGC
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAC
TTGGCctgcttggatttttgtttaatattttaaataactacttcaaaatagccctttcaaaggagagcacttttttttcctagaaaaggaacccattaat
gatttcgaaaaaattaatttattgcatctcactcattggccccaaagaagactaaggagattagatttagcatttggaggagtggaatcaagaaaagaca
aagaatatgaaacattgttgaagaagagcaaatatttcactggtagcaaaggactgtgacagttctacctatgtgataaatagacccaatattcttattt
ttccccatgttttaaatttaactaaacaccaatattcttgttttccagtaatgttaatattaatatcttgaatatcttaaaaattatttcatgaatc UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 62 522 217 NA intergenic
0 chr10 61035501 61035806 1000982 0 - Yc1RG214; RIP_Alu_chr10_061_01 GAGGGAGAGCATTAGGACGATAC TCACTCCCAATCTTTCAACTCTAAG SINE Alu Yc1 tatacatccgatttgttgttactaaatttttcctttaattttacatcaaatgactttgtagcatactttcagttacattctcatatagaatgtcagagat
ttgcgtactgaaagtgtcgaatctttatcctcaatatccaaagtagttttagcaaaagctttacacacacacacacacacacacacatgcacagcagaaa
gaaatatttatgtgaaactaagacaggaacagaaaaccaaacactgcatattgtcactcataagtggaagttgaacaatgagaacacatggacacaggga
ggggaacatcacacactggggtctgttggggggtgtggggcaaggggagggagagcattaggacgatacctaatgcatgtggggcttAAAACTTGGATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACTTGGATGAcaggttgatcggtgcagcaaaccactatggcacatgtatacctatgtaacaaacctgcacgttctgcccatgtatcccagg
gcttaaagtaaaataacaaaatacatatgtatgtgaataaaaacctgctttttcaagtgcttcatctgtactttacttagagttgaaagattgggagtga
atgattgtatatagcagcccttctaaagggagtcacatttttcaccacattttagattgcagaccctcagaattatgaaatttagctttcttttcagagt
agtggatggaaagactataagactgagggcttaatttcaaattccaatgttaacacttattagctgtgtgttcttgaatgaattacatattctccttgcc
actcaa UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 58 554 235 NA intergenic
0 chr21 29185638 29185974 1000983 0 + Yc1RG231; RIP_Alu_chr21_029_02 GGGGTTAAGGAGGAGTGAGAGAT CCAAATAAGGACAAAAGAAGTTT SINE Alu Yc1 atagaggtagtaaaaagaacagtacttgccaggggttaaggaggagtgagagataagtagatggaacacagaggattttttagaacagtgaaactattgt
ttatgatactataattgtggatacatgtcattatacatttgtccaaagccatagaatatacaacatcaagaatgaactctaatgtaagctatggatttgg
ggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccactctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcaggg
ggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgtgaacctaaaacttctctgaaagataaattttattttgaaaaacaCTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTATTCCCAGCTACTCGGGAGGCTGAGGCAGGAAAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATGAACTCTAATGTAAGCTATGgatttggggtcataaatgtgtataaatgtaggtttgttgattgtaacaaatgtaccac
tctcttgtatgaggctgatagtcggggaggctatgtgtgtgtgtcagggggtgcagagtatagatgggaacaccctctactttgtactcaattttgctgt
gaacctaaaacttctctgaaagataaattttattttgaaaaacactatgatacactaaaacttcttttgtccttatttggtaatacttagaaatataatt
ttattaagattatatttaaaagtagagtcaaaagatatgcatgttttagtgaaatatcttctattgttattactatcatcatagttattattatttgact
tagaaatcctcagtagacattatgaaattagagatca UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 62 949 409 NA intergenic
0 chr13 41844065 41844378 1000984 0 - pAlu13-41882603; Yc1RG283; RIP_Alu_chr13_041_02 TCCCCCTGTTCTATCCTCTACTT AACCCAAAAGATAATGGTGTCTG SINE Alu Yc1 ctctatttatgtggttacatctatcaatatttagcggttagaaattaaaactaaaagattctttaatatgtagtaacttattttaaaataagaataagcc
aggggtggtggctcacacctgcaatcccagcactttgggaagccgaggcaagtggatcacttgaggtcaggagttcgagaccagcatggtcaacatggtg
aaacgccatgtgtactaaaaacacacaaaaaattagccgggtatgatctcagctactcaggaggctgaggcaggaggatcacttgaacccaggaggtgga
ggttgcagtgagccaagatggcaccactgcactccaacctgggcaacagagcaagattacatctcaaaaaaataaaacaaaatAAGAATAAACCCATTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAATAAACCCATTGCctgttaacataaataacatattcttataaaaaaaagaactatatcttttaaaacaaaaaaaaacagtga
gactgatgtggaagctcaataaattactctcatagaagtagaggatagaacagggggatcgagaggctggggaggaaggagggagaggagatgacagatt
ggttagtggatacaggatcatggctggataggagaaatgagctctagtgttctttagcgctgtaaggtgactagttaacaataatttgttctatgtgttc
aaatagctagaatgtttcagcacaaagaaatgatcaatgtttgaggtgatggatatgctaattactttgatttgatcattacacatggcataaaggtatt
gaaatatcacactg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 58 963 632 NA intergenic
0 chr6 7662383 7662701 1000985 0 + Yc1RG328; pAlu6-7707282; RIP_Alu_chr6_007_01 GTGGCACAACATTTTCAAGAACT TTCTGCCCTTTAAATTCTTCCTC SINE Alu Yc1 tgaaaactccacattttttgaaaaacacacacgtacatgttcaggaagctgagcaaatcctgaacgaaataaacccaaagaaatccacgtgaagacacat
cataattaaacttctgggaactaaaagtaaagaagtcttgaaagcagccagggagaaacaattcgttacttcctagggaaaaacaattagaatgatggta
gatttctcatctgaaaccatggcggccaaacaaagtggcacaacattttcaagaactgaaagaaaagaactgtcaactgcaaattctatatccagtgaag
ctatccttcaagaatgaaggagaaataagctaattcttagacaaaagaaaactaaaagactttgttgctggtgtacctacccttAAAGAATGGCTAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATGGCTAAAGAgaattcttcatccagaaagaaaatgataaaagaaagactcttggagcatcaggacggaaggagga
agaatttaaagggcagaaatattggtacatacaatcgaatatgaatttcctcttgagttttagaaatcatatttaggccaggcatgatggctcatgtctg
taatcccagtactttaggaagccaagtttgggcaaatcacctgagcccaggagtttgaaaccagcctgggcaacatggcaaaaccccatctctacaacaa
atacaaaaattagccaggtgtggtggtgcatgcctatagtctcagctactagggaggctgaggtgggaggatagcttgagcctgggaggtcgaggctgca
gtgagccatgagcatgcca UCSC - Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 58 584 249 NA intergenic
0 chr10 32745744 32746070 1000986 0 + pAlu10-32855876; Yc1RG344; RIP_Alu_chr10_032_01 GGGACTAAATGCCCACTTACTTT CTGCAGAAGCATTGACTAAACCT SINE Alu Yc1 ctccataaatgctagattaactttgtttttaattttcttctcaggattcagtatagttagaaagaaaagtgaaaataatgtagaaagggtaagaagagta
tttcttaccttaatttgccaaactttcattataataaacctcttattttccagtattagacaattattgccctctgctacttatcaactgtgaactctta
agcaacggatttgtcctttttatacctaaagtttttgattttcaaaatcaggattagaatatctactttcaggtttatgatgagaatttactacgataat
ctatgtaaaaggacctcacacagtgatgagcctatattgggactaaatgcccacttactttattttttcttccaactacgtacttaaaaATATTCTATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAATATATATATATATATATATATTCTATTCaacatatttttatttttcaggtttagtcaatgcttctgcagatgcttttcggaaagtctggt
tactggtgaacttacttttttcattaccttagatattttttaaaattacggtaaaatatgcaaacatgaaatttactatcttaactatttgtaagtgtac
agttcaatattattaagtatattcacatcgttgtgcaaccaatttgcagaactttttcatcttgcaaaatcgaggctctatacccattaaataagtcccc
attcctccctaccctcagctttattttctctttctatgaaattgattactctagatccttatgtaagcagaatcatatagtatttgtctttttgtgactg
gcttatttcacttggtgtaatgtcctc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 207598912 207599227 1000987 0 + Yc1NBC31; RIP_Alu_chr2_207_01 TTCTGTAAAAGCCTGTTAGGTCCA CAGCATTTCACTGTCAGCATTGG SINE Alu Yc1 agagattcacctcacctgtaaagaacacacacaaactgaaagcgaagggatggaaaagatagtacacacaaatggaaactaaaagtgagcaaaagtagcc
atacttttatcagataaaatagacttgaaattataaaacccccaaagagaccaagaaaatcattacataatgacaaaggaatcaactcaggaagagaata
taacaattataaatatatatgcatccaacaccagcacacacagatacataaaacaaatattattagagctaaagggagagatagaccttaaaaaaaataa
ggtggaatttcaactctcagcatttcactgtcagcattggacagatcgtctacacagaaaatcaacaaagaaactttggacttAAACAGCACTATAGTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAACAAAAA
CAACAACAACAAAAAAAAACAGCACTATAGTCCaagtggacctaacaggcttttacagaatattttatacaatagtttcagaatgcacattcttctcact
ggtacatgaaacactaagatagaccatatgttaggccataaaatcagtctcaacaaatttttagaaattgaaatcatatcatgcatcttttcaggtcaca
atggaatgaaaccagaagtgaataacagaaggaactttggaaactgtaccaccagatgtaaattaaacaacctactcctgaacagccaatgaagaaatta
aaggtcaatgaagaaattaaagatactacaaaatgtattgaaacaagtgaaaatagaaatacaacataccaaaacctatgaaatacagcaaaagcagtac
tgagagggaagtttat UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Garber RK, Hedges DJ, Herke SW, Hazard NW, Batzer MA. The Alu Yc1 subfamily: sorting the wheat from the chaff. Cytogenet Genome Res. 2005;110(1-4):537-42. PMID:16093706.
E:Insertion-specific detection:PCR NA 60 443 110 NA intergenic
0 chr12 56744491 56744492 1000988 0 + Ya5HS4.32; RIP_Alu_chr12_056_01 GTTTATTGGGCTAACCTGGG TGACCAGCTAACTTCTACTTTAACC SINE Alu Ya5 gggcccaaatttcccttcagaatctccaccacggtactcatctatattttcagtccttaattaaatctggtttctgctgtgcttttcattcaccatttag
taaaaatgaaaacctttcttaataaatttcagagatgggagattaaattacttacataaatgctaatatggcaatggaattttttactaaattttttctt
gtaaatacatgatatggcatcaatataaatgagtatgaatgagtttattgggctaacctgggtacctatctgcatttataataccatttttatgagcaaa
tgcattgtatcttccagcaaacagacttgcaagctgatttctggaaatctagttttcgaaagttgaacactgtgtaattcaatAAAAATATTCTAATGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATATTCTAATGAGaataaaagctagacagaggcataataatgcttttcctaatttttctacctttcttttagttacctttttagttacatgaatagtcta
cagcaaaatagctaagtgaggttaaagtagaagttagctggtcattccggcataagtgaaaatgtagaacttagagtgtacctttgcttaaagtcagttt
tctttcaggaattcattttaatattgtgatagtagagaccatgcgaaaaaatatgaaaaaactcaaacaagaaaataatctttaaagaaaatttgagaac
cttcatttccaaacttttataagtagtttttaccaaagacatgctcattaagctttgccaggccactgtcagtagtggatacatgattaaatccac Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr14 62957242 62957555 1000989 0 + Ya5NBC208; Ya5ac2368; RIP_Alu_chr14_062_01 AATACCTTGTACATCTTCACCCCTA TCTCTCTGCTGCACAGTTTGTT SINE Alu Ya5 caatctgggatatacctatgaaaagcacaaatagttttacaagtttcttagattgcagacaatatgtctgggaccttaaaaaaaaaatcaaacatctaag
atagtaaatcaattaccgtgttttaactaatttacccagtcttagcattggaggcaggaatacatatgcataacacgcctgagtaagagctgagaaaaca
gagcccccaaaagctctctacgtaacaacgggaaatagcacacgtgtgtacttgcagaaactttgagttgtcaaagcaggacagacagacttgcaaattt
gtgtcagaaattctgaagtaggggggaaaaactcttagaatatctctaggccttctctctctgctgcacagtttgtttgctcttcAAAAAGTCAACCTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGTCAACCTGAaccatgaatacatttctacgaaaatgcagcagcttctgcctaggggtgaagatgtacaaggtattattcat
tttcttccaccccttcccccttgctatttgtcgagcaacctaaggatattctgactcaatggaagggtgactttggggttcaacatgtacaaatttcctt
gctctattcttttgagaaattttggccttcagagaaggcagcacaaggaaggaacgagctggaaaattaccagtatgtattatacaagttaatacaatac
agatggctctaatgctggaaacagagatgcagtgatgcccctgatccatcctggcacataagtgtgattggaaaacatggccttctcagtgcaagagaac
agaattggccttta UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Reference NA 50 441 115 NA intron:PPP2R5E:NM:006246:4/14
0 chr16 19137939 19138265 1000990 0 + Yb9NBC30; Yb8NBC243; RIP_Alu_chr16_019_02 GAACCCCATCCATTCTCTTACA GTGGCAAAATATTGGCGACT SINE Alu Yb8 gtgaagactgccaggattgggcagagcccctgggatcaaccactgggcagcttgccttggttcctgtaggcgtctctagaatccattcattctgcccaca
ctggccttctctttgttcctttgaacacactgactgagtgatgccgggtttattcctccctccctccatcccagaccttgcacatgttgttccctctgcc
ccatgagtccctatccctctttcctccctcattcctcttcaaacctcgcctctcagagaaaccctaccccatccaccgactgaaagggcagctcccacgc
gaaccccatccattctcttacactgcctaatttgtcttgttttcctttttcatatttattttatgtttttaatgggaatatttcccacatAAAATAATAA
AACAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAA
CAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAtaataataataataaaacaaacacccatgtgtccatctcccagatgtcgtaagtcgccaatat
tttgccacatttgcttacttcaaatcactccctttcaatcaactgcattgaggcggaacttactgtttgttgatttttggcaaatgcacacgtaactgct
accacaatcaagatatagcatattgctatcacccaagaaatgttcttcctttctctcactctgctatatttttcttcctaatacttagcattacctgaaa
tcatctcatttatgtattttttaaaatctgtgtgctatccatcccccccacaggagtgtatgttccataaagtcagggacggttctcactggtgtatcct
tagtcctggtacatagtaaactgtttt UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 60 508 156 NA intron:SYT17:NM:016524:5/8
0 chr1 215091491 215091492 1000991 0 + Ya5HS2.43; RIP_Alu_chr1_213_01 ACTCCCCACCAGGTAATGGT AGGGCCTTCATCCAGTTTGT SINE Alu Ya5 ttttctgaacccttagaatcctagcaggactggaagaaaggttaaagatctatgactaattagaaagataattttttgtaaagaaagaataactacactt
ctcagagtgcccactcattactaaaagctgtgtgctttgagtcagcagacctgaaaccaacaagatgcatgtgctgcttttcttgtttcggcatctaagt
tacttttgaaacacagtagtgtaggagagaactacttgttatggactaaatgtgtgtattcctccaaaattcacaagttgaaatcctccccactccccac
caggtaatggtattagcaggtgaggcctttgggtggtaattaggtcatgagagtggagccctcatggatgagattagtgcccttatAAAAAGAGGCCAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAGGCCAGAgagcgctcttgccctctttccactgtatgaggatacagggagaagttgacagtctacaaactggatgaaggccctcgccagaacctga
tcatgctgacaccctgatctcagactttcagcctccagaactgtaagaaattaaatttctgttgtttataagccacacagtctatggtgcttcattacag
caggccgaactaagacactactgttggctgctaatttgcagaaatgtgcatctctcattgacccggctaaggatccttttattttttcctgaacattata
gaaataaacaagaccaatcaaacaaatattaggaaactggtatttaggaagagtagaaaaatcacccaagtggggccacactgatatcaactttacaa Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:ESRRG:NM:206594:3/9
0 chr1 169527860 169528165 1000992 0 + Ya5NBC237; Ya5NBC220; Ya5NBC159; RIP_Alu_chr1_167_01 GAGGGTCTTTCCTAGGTTTTGTTT ATGTCAGGTGTCCCTTATGGAGTAT SINE Alu Ya5 tttccaccaggcctgaggactgggggtggtaggcacaatggaaatgttgaaatatgggccaaatttcacaaacatcttgaataacctggccggtaaagtg
agctcccctgtcactgtgaagttcacaggggactccccacagtgggataattttttgtagaagaattttccaactgccatggctgttgcttgcctgcagg
gaaaagcttcaacccaacgggaaaacatgcagaccattacaaaaacatacttaacaaccttgagatgatggcagccagataaaatcaagctgccatacct
caaagggtccagccggaaggaaaaaatgaccgtgggccccatggagggtctttcctaggttttgtttgggacaaatagcacattAAGAGTAACCTTTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAACTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCCTCCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTAACCTTTTTGtgccactgtgaaggatggtttccagtaatattgtttacaccagggtattattttatctagattccaatgggttagatt
atgaacatactccataagggacacctgacatcccattggaataatgggtttattattaggtccacatcatatttcactttcaagagacaagtacctccct
gcctgtttccaagtagatttctcttctgtaggagctatgctctgggtttctttcaacatgtttttaagtatttggggttttatggccatttcccagattg
ggactggtggctcggatgctgctcttttagctgtagcttcagccagttggttaccctaactttctatggtgtctaattttgaatgacctgggattttcat
agttgc UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Reference NA 60 410 88 NA intergenic
0 chr20 24217611 24217829 1000993 0 - Ya5NBC335; RIP_Alu_chr20_024_01 TGGGTACTTTGGCCTTAGAGAA TTCACAGCATTAGAGAGAGTTGATG SINE Alu Ya5 taagttcctttaaaagacattccaggcatccagctagccctgagaagtaaacgagtgacttactaagcaagaaggtaatcatagctaaaaaccatagcca
aggaagtcagtcatgagatgttgggtttcctaaaatttcatgctttgtgtttatttcataaaccgtagtcaaaatttaggggcctatgatctaaatgaaa
gtgaaaacctgaaccaaataaagtgactgattctttgtatctgagcatactgaatcatgcctataaggtaagtttagaaagtaaatactgtaagagatgt
ggagagcactccaaataaataaataaataaacaaaactaaaaccttgtttactgggtactttggccttagagaaaaagatgactatGAAAATACAGGATA
CCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAGGCT
GAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCA
AAAAAAAAAAAAAAAAAAAGAAAATACAGGATAaaaatgtcattcacaattattcatccagaaaagatttaattccaatctaaactatcatcaactctct
ctaatgctgtgaaacagagtcaataactgcagtttttctttgttttttttttttgtttttttttcaacttttattttaagttcaggggtatatgtgcagt
atgtgcaggcttgttcataggtaaatgtgtgccgtggtggtttgctgcacagatcatcccatcaactaaatattaagcatagcagccattagctattctt
cttgatgctctccctcgctcttcacacaacaggcctcagtgtgtgttgttccccacactgtgtccatgcgttctcatcattcagctcctacctataagtg
aaaacacgtggtgtttggt UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chr2 189562203 189562204 1000994 0 + Yb8COL3A1; RIP_Alu_chr2_189_02 ACCTGCAGCACCAGGAGGTCCTGGAGGGCC GAGTCCTTTAGAAGGATATGCTCTG SINE Alu Yb8 taataaaggaattccctcatcattagccatcaaaatagtccacttcccagagctgataaaaattctgtatatattaaatatagatttcatttttctgtaa
acactcagttcactcatatctaatctactgataaatatagttatatatttacatatgtaaatatacatatacatatatcttagacagtagaaataaacat
aatcttagagagtcctttagaaggatatgctctgtaaataagcaagtaaaatagtttaaatacaacatttcatgacatttagaaatacctttatatttag
atatatttaatattcctaaacgtgtagaaatgcatttggatttataaatacacatacgtaatatatgatgcttttaatttttattaacagtaagttgata
nnnnnNNNNNNNNNNnnnnntaatagaggtataatattaactcagtaagtatcattttcattatcagaaacattaaaagtattttctaaaaggaggttcc
ttccaggaatacatacactgtgtaataataaattgtaacagaaaaatttacaaatctattcattttttatttccttattttcagggccctccaggacctc
ctggtgctataggtccatctggtcctgctggaaaagatgtaagtttttaaaacttaaataagaatacagcaaaatttaacttggtgtattctaaacagta
tatgctttatgtcagaatcccagaagaaaaaaaaatgttattcaaaatattgttgtcttaacaacattttagttaatactaatttttgagtagctataca
gtatttgcgtttctatatat Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization precise insertion position unknown TSD unavailable NA NA NA NA intron:COL3A1:NM:000090:7/51
0 chr3 176098316 176098628 1000995 0 + Ya5HS4.75; RIP_Alu_chr3_176_01 CAGCATTACATACAATAGTTAGGAGC GTGATATTTGTCTTTCTGTACCTGG SINE Alu Ya5 ttgatcattagagaggtgaaaacaaacatcttgaaatcaaaactagagatataatttcacctcagttaaaatggattatatccaaaagacaggcaataac
aaatgctggcaaggatgtggagaaacaggaacccttgtacattgttggtgggaatataaattagtacaatcactatggagaacagtttggaggttcctca
gaaaactagaaatatagttaccgtatgatctggcagtctcactgctgggtatatacccaaaataaaggaaatcagtgtatgaaagatatatctgcactcc
tataattgtcacagcattacatacaatagttaggagcaacctaagtgtccatcaacagatgattggataaagaaaatgtggagtcctattcagccatAAA
AAAAGAATGAGATCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT
CCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGG
CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAATGAGATCttatcatttgcaataacatgggcagaattggagattattatgttaagtgaaataat
ccaggtacagaaagacaaatatcacatgttctcacttctttgtgtgacctaaaaatcataataattgtactcatgatatagagagtagaaggttggttac
cagagattgggaagggtagaggggggttaggaggagggtagatagataatgcgataataatagataagtaataataaataaattaataataaatagaatg
aataagactgactatttgatagcacaacagggtgactatagtcaataataacttaatggtatgttttaaaataatgtgaagaatataattcgattgtttg
taactcaaaggataaatgcttgaggag UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:NAALADL2:NM:207015:1/14
0 chr4 144792752 144793064 1000996 0 - Yb9NBC10; RIP_Alu_chr4_144_01 GTTTTCCTGGTGTGCCCTAAATA TTTACCTAACTCACAAGACCCAAAG SINE Alu Yb9 acctcaggagttcaagactagcctggccaacatggcaaaaccccatctctataaaaaatacaaaaattagctgggcatggaggcatgcaactgtaatccc
agctactcagaggctgaggcaggagaatggtttaagcccaagaggtggaggtggcagtgagctgagatcgcactgtactccagcctgagcaacagagcca
gactctgtctgaagaaaacagaaagaggaaaagcaggaaagcatgcagtcttcacctcaatttacctaactcacaagacccaaagggactgaatgggatt
ttttttctatatttcatttcatttgccactttcatttctattgctcgttaaggcttttaaaactctttatgtattactctttttttAAGAAAGGAAAAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAGGAAAAAGaccatttgaatgaatagttatttttaaatttatatatttagggcacaccaggaaaaccaaatgaacagggaag
aaactggcagcgtgtaacattaagcacaaaatggtaagatgttatacacagctagggacttgtgcagaaatacaatacacagaaaaatcttttgaactat
tagttcttcagatattacaaaaaatgcagctccaagaatgagtccattgaaaagaaaataatagtaatgctgaattaaagtacactattccattcagcac
ataactgattattttatatgaaagtgacctatgtcatctttacttccttctctccttccatctgttaagaagtataaatgacttaagggtgggctttatt
attttctcacagg UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR NA 60 524 197 NA intergenic
0 chr5 95019977 95019978 1000997 0 - Ya5NBC27;1104685725664; RIP_Alu_chr5_095_02 CTGAATACAGGTATCACTGAACAGAAC;TTCTGAATTGCTCTGCTTTCTT ACAGTGTAAAGTCTAACCTACCAGAGGAT;CCAGAGGATGGATTTTCTTGTT SINE Alu Ya5 tgttaatgctgtgctgaagaaggtaaagaacatcttccaggaagaagaatccataaggcaaaacagagaggagagtgaaaattgtagaaaagccttttct
gagcctgtgctttcggagcctatgtttgctgaaggtgaaatcaaagcaaaaccttataggtcattgccggagaagccagacatttcagattaccccaagc
ttcttgctaataagcagagtaataacatccaagttttacattctgtgtttgaccaatcagctgaaatgaacgagcaaatctgaatacaggtatcactgaa
cagaacttaagagttatctatttaatggcacatttcatctgacaaaactcagagtctagtttacatattctgaattgctctgctttcttAAAAAAAAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA
GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA
AAAAAAAAAAAAAAAAAAAAAAAGAGaagggggctactattaaaatgtcattttctagtatttacatgatagagtaaataaaatgaatattgatgtggaa
tatatgtactgactacatacttttaatgaacaagaaaatccatcctctggtaggttagactttacactgtggtttataatataagcatatttataataca
ttaatgtttttattaaagacttgttttgagtgtctaattctttacttgggaggaaaaaaagccccatcaagatggtgcatatcaaaataaaagaatattt
attttttatatgcagactggagagtttgagtctgcctattattattttgtaaatcacttgcaaagttatgaaggatttgcaattcacagatgtcataaat
ttataaaacaaaata Other;Venter - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA;NA 55;60 591;483 265;158 NA;NA exon:3UTR:SPATA9:NM_031952
0 chr5 143333844 143334002 1000998 0 + Yb8NBC547; pAlu5-143336706; RIP_Alu_chr5_143_01 GCCCATGCTCAGTCTAAACC GATTGGAGCCCTTGTCTACG SINE Alu Yb8 ctcctgtctcagccttccaagtagctgggactataggcacctgccactacgcctggctaattttttgtatttttattagagacgggggtttcaccacgtt
agccaggatggtcttgatttcctgacctcctgatccacccgcctctgcctcccaaagtgctgggattacaggcatgagccaccgcgcccagccaactgcc
agtctctttcaacttgataggtgacaaagtttggaagcaactttcttaattacatagactttacatatcttttgtaaaaatgctagacatgctgtgcttc
tactctgacagtcagtaaaacagtgctgattggagcccttgtctacgacaaaaaaataaatgttcctgcttcttcttagcaaatAGAATCATGGCCTGGA
CAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTC
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAATCATGGCCTGGAaatcgagaaatttgcatttttagct
tctgctgtctcgccaaccatttgtgagacacagagtgaaccacagttgctctgggtcacagatttggcaaaaataaactgagaggtttagcctggatagt
ctcacggcagcacacatggtggtttagactgagcatgggctccgaagtcagacatagttggattctaatcccactcactctaccacatactagttacatt
accttggacaataaccatctatcttcaactttcatttcttcaccagtaaaatgaaaatgacatctattttacagcatttttgtatggattaaatgagata
atgtacataaaagcacttagcacagttcttggcaaattgtaagaggtcaatctagttaa UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 413 238 NA intergenic
0 chr7 80639636 80639961 1000999 0 + pAlu7-80399849; Yb9NBC29; Yb8NBC207; RIP_Alu_chr7_080_02 GTAATATGAGGTGATGGGGGTTACT GGTGAAAGAAGAACCCCTAAGTTAT SINE Alu Yb8 aagtctggtaaaatcaacagaggcactcagaatgtctccaaaatcatttccatgatgccagaaactttaaatgctacagaaacaagctacagcgatacat
ttaaatgttcttctttgtagggcttgagctgtatctaaacttaagttagagctcaaccaacatagaatctagttcagtaatattctacaacgtgagataa
ccatattgatatttgatctaaaatgagattgcagaggaaacacattttaatacctgaggtgtgtgcttaatcttcttgatgtacattaaaagctcagtat
gtgagagtaatatgaggtgatgggggttactcttaaagagattactaataatgtttatttggaaaaagatgaagattttagaggctatttAAGAAACTGG
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACTGGttctgggaaaaccagccataacttaggggttcttctttcacccaatcccattggaattctgctt
tgctatagaaacatgctcaaaccaaggcaagcagcacacattacatgaacaaacaacacaacaatgaaaagcagatccttgagaccctcccaagaagacc
aagagctctctctttaaaactttgtaaaatacctaggttctctagtcttcctgtgtgttatttcctaaccaattgcactatcaattcaaaaatggaacaa
aggatattctatgtatcagaaccttttttcctatacattaagaagaacttttcccacatgaataggtaatcacaatcttaagccagaggatgaaacctat
gaattccttgtatcatatatatttta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 474 138 NA intergenic
0 chr7 127553665 127553964 1001000 0 - Yc1RG68; pAlu7-127306922; RIP_Alu_chr7_127_03 ATGGTGTCCACAAGAAACTGAG GGAAGGCTCCATTATAGGTCTTG SINE Alu Yc1 tggtctctcaaagtgttgcaatcatagttgtgagccactatgcctggccccaacttttaaattattacataatactcattttggataaacttccagttta
tacagaaaagagatgggaaagtcttaatctaattttctgataataggatcactgtgatcctgaaagtcgacatggacagcacaagagggaaaactacagc
cacttccacttatacacacaaatacagaattactaatcaatcaatgaccaagtagggttgttccagaagaatatgcaagaaaagagttgaataaatagaa
acgataccatgttcatggatgggaaggctccattataggtcttgtacattttttattaggttctttttcgagtttatattgctgttAAGATGCTGTGCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAGATGCTGTGCCCagtatatattgggtccaagaagataaaagccaaatactgacaaaagtagagaaaaaagaaagaagctcagtttcttgtggacacca
tggggtctctgcattagctctggtctgcatccctttggatttacctgttatgcaaaatttaaaatcctattatattaagtatctgtttgcctctgttact
aaaagctgatacaaagcccaataaaactttcaataagatttttcatgacacttgacacacaaattctgaaattcttactgaagaataacacaccgacatt
ccaggaagtgaaagagggaaattgggaaaaggaaggggcagtgcctatagcagaaaaactttcccagaaattcccccatagacttcttgctttttctagg
UCSC - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 89135847 89135848 1001001 0 + Ya5HS4.65; RIP_Alu_chr9_087_01 TGAAGCCAATGGAAAGAGAG ACAGGAGCATCTAAACCTTGG SINE Alu Ya5 agaaaccaaaaacatacaacattggctttaagactgggtggggcaggcgggagccagaaaggtctcaaaaaaccactaaaggagactggaaggagagtga
ggaaattgttattggaggctgaagaaaaggcaactcatacaatatattggtagaacatttaacaacactgtcaaactatgaagccaatggaaagagagat
gaaccaaaaaaaaggactgctcagattgagagcagaatttagaaaacacgttgagaactcaggactcaacaaaagattctcaaaggaagaaatgtcctta
aggcaagtattaaacccaggttgctgcaagtaaaatatagtgtcagagaaaatgttcaaatcaaaagtgcaggcgtaagaccttAGAAAGATTTGAGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAAAGATTTGAGACAgtgcctcaataaccttcttcatttccaagacagaagggcttccaagaatcttaagggatttgttctatagcatttttaat
ctcagtccaaggtttagatgctcctgtctcaaggagaattctgagtgtcgcatttatctaagggattggaattataatttgatgcacaggaaacctataa
ggtttttaaaggaattatattaacttggtctaaaagatacagagatggttcaaaatgaaaagaggtctctgggtccttaacctcttataaagagaaagga
gattgagactgtctcctactcagctgcaagcatagataatttcttatagaaaagaacaggtcactagagagctgagtcaagaaccacagagaaccatgaa
agag Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr9 118516899 118517218 1001002 0 + Ya5NBC239; RIP_Alu_chr9_116_01 CAGCTGAGAACTGTCACAAATAGAA ATCAATGACTGACTTGTGCTGAGT SINE Alu Ya5 actaacagtaataataatcattattggcttaattatgtctcatgataataatgaatgatgatcataatagcatttcctcagcatttgttatatgccaggt
gcagcagtaatcactttacaaacatcaattcatttaaatctcataacaatactgcaagataagcataattatacccatgttaaagataagagaattgagt
cccaggaacctaaaagacctgacctaagtcacacatctagagaatggaacagatgacacatagcttcttatgtatgttgccatttgttgaaacttacacc
tgtcgggaggagaatgcatcaatgactgacttgtgctgagttcctgctatgagccacgtaatcacatgatctcacatcatctgcatAAGAATCATGTGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATCATGTGAGatctaaatgtttttccagctattcccctggtatctcccaaagtggccagttgttttcacttaattt
aaggcattggagattcagtcttttctatttgtgacagttctcagctgtggacagaggcaatggaagtgtctctaactacttgggagactgaggcccagtg
acattcaaaggtctaacaaagaagccaatagcattccctaggagcactgaggggatgcaggtactatattgctcctaactggtccaagagacttcgccat
tcctaaaggtgccaggccttcctacaaatctagctttgcattgttgtctccttgcgtggagtctccttcctccccaccttcccagttggcaaatgcctac
tcacccttaggttcctgttt UCSC - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Reference NA 55 531 198 NA intron:ASTN2:NM:198187:16/23
0 chr5 91516544 91516886 1001003 0 + Ya5-MLS04; RIP_Alu_chr5_091_01 GCCACATTGTAAGCAAGTAGCAC CCTGTATATTAAGTGTGGGGTACTCA SINE Alu Ya5 aagaattttgatcaaatgtactgaaatatgttggtctgaacaaggtaaaacctatttctttattgcaagacttctcagagactggataaacataaaatca
taagggcttagattgtttataccttagttacccctgtatattaagtgtggggtactcaataaatattgatttaataaatatcctaatgcaagctgtgatt
ctctagaatgagagtgaaaatatgctatagttcccaaatatatttggcccaggtccttttttttccccacagagcatcttgctgtacagaacacacgtta
ggaaatgctaatgtttggattattcctggaagagactattactaggaatccctttcccaaaaactttctctagagcaaatcgttaaaagTAAAGTCTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAATAATAAAGTCTATTatcacaaaaattcaataagcactgacagaatgcctacagttccagt
tattgtggaaagtacaaaatattgggaatattaacatggttacaattaagtccttgcgtccagattttgccacagtgtgttgaaataatttgtgtttgac
tggcttattataatgtacactacagatataagtggtagttcaaagcaacaataaatagggaagaaggcaggggacacagtaaatagcatttgtaatacac
ctactctgagtcatgcactgtatatatatatatatatataaatttcacccacttcataggcctatgagtttagtaagcatcatgacctgctagcacagaa
atttagaggcaatatagtatattgcataagaacatggagtctg UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr4 178106327 178106628 1001004 0 + pAlu4-178453682; Ya5-MLS05; RIP_Alu_chr4_178_03 TAACTGGCATACGGATTCTTTCTC ACTACTTATACACACAAGAGAGCACATG SINE Alu Ya5 ccttttttgtcccctttagtggcaacaatggttatttttgtttcctttaccctcaacaaggttattacttcatatgagctggggtaactgtaactctaaa
gtgtaatgtatgttataccagtacttacatttggcaaaatagaatccttaggaacataattcactctcaattaaactttcaacatataccacgaaactaa
gaagtcaaataaaattacgcatcttagcacctgcttagatgtttgctagaaaaatttagtttagatttgggagacaggtaaagtcagtcttgtctttaat
aatgaaatactcaatttgaaactggagatttagctcctggtatttgcagcttactatatggtaactggcatacggattctttctctAAAGAACAGGATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAACAGGATTAacagtgaaggtctctgataattttgtggatagcaagtctcctcttattgtcatcatgttactaaagtaaccaagaaggatcagc
gaacatagtcttcctaagggtagaaaaggagttctatttttttatcaaaagaaacttggtacatctttaatgattgaaatatttattgattccaagaaac
tataaatgctcatttaaagctcaccgcaaatagttatttctaccccacatgtgctctcttgtgtgtataagtagtcacacacacaggcacgcagacacac
tcatggattttaactattagaatacaatgcctacaggactttctggtcagaccaaagtatgaaatgataaggatgtttctgaaaatttgaaattttacta
tt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 52912998 52912999 1001005 0 + Ya5-MLS10; RIP_Alu_chr6_052_01 GTGCTTAGACCTCAGTTTATGGAGT GCTATTTCTTTGCTCACACCCTTAC SINE Alu Ya5 catgctggtgctgtgactggatcatcatgtttgtcatcacgcaacctgctgccattagagcagcactatcttcctggcaagttcaacatagtgggtatcg
ggggtggcttcctctgactcccaggctgcaggaacttcttaattgtagggatgttgctgattcttattttaaatgcctgaaataagaaagagtaaaatca
gggcctcaatagcagtcacaacctttaagaaaaatctcaactttgtcatgaatgaagggtgcttagacctcagtttatggagtacagtgtactgaatctg
cttaatccctcagcaagtgtttgctgggtatttctgggatggataataatacaactgctgacatgtttagcatgagttatattatctattAAAAAGTCAC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAGTCACaatcaggcagtgcatacccctaaaatattcatattcttttttttttttttgagatggagtctcactctgttgcccaggctagcatgcag
tggcacaatctcagctcactgcaacttccacctcctgagttcaagcaattctcccacctcagccttccaagtagctgggattacaggcatgcatcaccac
acctggctaatttttgtatttttagtagagacagggtctcaccatgttagccaagctagtcttgaactcctgacctctagtgatccacctgcctcagcct
cccaaaatgctaggattacaggcacgagccaccacatctggtcacattcatattcttgacctatcaattcttgttttaggaattattataaaggaataag
t Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr15 50312485 50312798 1001006 0 + Ya5-MLS11; RIP_Alu_chr15_050_01 AACAGGACTTACAATGAGAGTATAGCTC AGACTTTGTGTTTGCGACTCTTG SINE Alu Ya5 gctttaaggcaaactagattccatacattctttgccgttcttccttttgtacatcatcaaagagctgcttggtgaggttgtccattttttctgtaaaaag
agaatgctttttgagatatgtctgccaaatcaatgccttgattgtttcatgttatgtttaagaaagtgagaatgtcaggacaatcatgtgatgtttatta
ttaacaggacttacaatgagagtatagctcattttttataaacaagaaataaagatgagggggtttcaaaataataattctcacaaatttgtcagattgg
aattatcaataaatagtttcatttatagtacttttgttggtctgttatttattaaagtagatattggctttgagacaatgaatattattAAAAATAAATA
GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AATTAAAAAAAAAAAAAAATAAATAaataaatagaaaccctttgggaagaaaatgatccatttgtgacaaggtttctcggtcttggcactattgctactt
tgggctggataattctttgctgtggagaggggctgtcccacgcattgcaggattctgagcagcaaccctggcttctaccctctagaagccagtagcacct
ctgctccagttgtgacaacccaaattgtttccagacattggcaaatgtctggggggtgaggtggcagcaaagctgagaaccactcatctgtgataaccaa
gaaaataatcaagtgtctgtctctatctgggaaagaggaagtacaaaaaaggcagctgttaacactgaaatacaagagtcgcaaacacaaagtctgcagg
ccgaagggcaggac UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:MYO5C:NM:018728:23/41
0 chr7 47799185 47799186 1001007 0 + Ya5-MLS14; RIP_Alu_chr7_047_01 GGCCAGAGCATATCTTATCAGC CAGTCATATGTAATCACGGTACTGTAC SINE Alu Ya5 gactctcttctgtccttgcctcccctgtgttgttggatgttttttccagaagggggagttgtaggctgtcggacaaaccattaatcttcatcagaagttc
gtctaacagatttgcaaattcatccaagtagtaattctgaagggaagaaaattagattagtaaatgcattcaagaatctcattatccccctttcctcatt
atgtgaagcatttaggggtatcatctgtagacagtattgggctatgttaggaaacatactgactctgcctgcagttagaagacctgggtgctgggcctac
tcttacatctctatatctcagttgcttcaataataatgtacgtatacagatatacatgtaaatgctacagttaataatgcctacatAAAAAAAACTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCTCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGAAAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAACTATTGaatggatttaaaggcagtaatgcatcatgctgctatgggaaaataaggtcattcttt
catcccttcgattaataaatctttattgagcactattaaaaaaataaggcaataatggatggggaagcacatgacagagaataaagccctatcaaaatgt
acagtaccgtgattacatatgactgccttcagaaccttactggatgatgcttaaatatcacctgatatggtttggttgtgtccccattcaaatctcaact
tgaattgtatctcccagaattcctgtgttgtgggagggacctggggggaggtaattgaatcatgggggctggtctttcccgtgctattcttgtgatagtg
aataagatctcatgagatctgatggctta Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:PKD1L1:NM:138295:55/57
0 chr16 78774941 78774942 1001008 0 + Ya5-MLS16; RIP_Alu_chr16_078_01 TTTCAATTTCCAGCATTATTTCC CAGCAATTCCATATTCCGCTAT SINE Alu Ya5 aacagcatggggattcttcacacattacatactactaatccaaattaaatacagaactaccacatgatccagcaattccatattccgctatgggtataca
tccaaaagaaacgaaatcaatatctcaaagagatgtctatactcccatattcgtagcagcattattcacaatagtcatgatatacaattaacataaatat
ccatcaactgatgaatgaagaaaatgtggtatatatgtacaatggaatagtgtccagccttaaaaaaaaaaagaaaatcctgtaatttgcaacaacatga
atgaacctggaggatattatgcttagtgaaatacaccaggcacaaaagacaaatgctgcgtgatctcacttataggtggtatcttAAGAAGTCAAATTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAGAAGTCAAATTCAcagaagcagagaacaacagaatgatggttgcctgggactgggggcaaaaggggggaggatgaggagaagttggttaaa
gtctacaagatatcagctcaacagtaggaataagcactgaacatctattgtacaacatgactactatagttaataataacataccgtatacttaaaatca
ctaagaaagtcaatcttaaatattctcactaccaaaaataataaggatgtgagctgatggacatgtgaagtagcttgatttaatcagtttgcaatccata
catatatccaaacattactataaatatacactattttatttgtcaattagaccttaataaagctgggggaaataatgctggaaattgaaattttaaaatt
taatttc Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr20 9553207 9553208 1001009 0 + Ya5-MLS20; RIP_Alu_chr20_009_01 AGGGTCATGGTATGTCTTGTAGTC GTTTGAGATCGCTGTGACTTGT SINE Alu Ya5 cttaaacatacttatctcaaaatttggcagaaagagtttttgctataaaaataagtaaggcataggagaactgtatcagaaaatgcaacttttgtccagt
cctatagaaattttagcctgtcttggttatcaatatctcagtcactgacatactcagtttcacatctcagcaagcactgacatcatgcctagcccatgac
gggtattcaataatgctgaacaaattgaatgttgaatacctaaaaaaggtatggatatggtgaataccttagaaaagagtagaatttgtacacttggaag
gtacttctagaaagatttttatgccatgtccaggatggggtagaaatattataaaggtaacagaatttcttccaacttatctgttttcttaAAATTAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAA
AAAAAAAAGAAATTAAGGttcatgttttctccttacctctctgtcttataatgtgctagtgttcccattatacccttgacaagtcacagcgatctcaaac
acagctctgtgctttgtggaaaggccctggctctggagtctcctgagctgggtggagcacgcctcagctctgctatttgagagttgtgtgactgttggtg
agtcctttgggttctctgagcctcagatcacccagtctgtaaaagaaggataatacctacctcacaggggcttagatggggtaatgtgtgttcaaatatg
ttactaactatgagccccagtcctacatcccaaagtgagttcgcatctcacagaaacaaacaaacaaattatgaatctgttataagcaattaagtaagga
ttcttcaca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:PAK7:NM:020341:4/11
0 chr15 68195693 68195694 1001010 0 + Ya5-MLS21; RIP_Alu_chr15_068_01 TGGAGAGTTTCAGGACAGAGCAAC CTCCCATAACACCTATGCATTTCTC SINE Alu Ya5 atgattccagctagatgacattctgggaaaggcaaaactatggacacaggaaaaggatcagaggctgtcaagggttaaagggaagggagggatgaatagg
tggaccactggagagtttcaggacagagcaactactttgtgtgacactttatacatttgtcaaaatccaaagaatgtacaatatcaagagtgaaccctaa
tgtaaactgtggacttcacctaatcatgtatcactattggttcatcaattatagtaaatgtactatgctaatgcaagatgttagtaacgggggaaactgg
gggtgaagtgaaagggtgttggggaattctactttctgcttgatttttctgtaaacctaaaactgattttttttaaagtcctttAAAAAAAAAGAGCGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGCGTCatgaagtgtaatcacggagaaatgcataggtgttatgggagcaatctggggtagggggtggggagggcttgggagcatggg
ggtcactaatgaagtcaagacccttgtatgtaaagttagacagacaaagtttcaagttccacctctgccacttatccaccatgtagccttagccaagtta
cttaacacctcttaaacctcagcttactcctctgtaaaatggggctaatgacgcctgccaccaaattattatgtgatttaaataaaatgcaaataaagta
cttggcactgccagtgatgagagtcagtgcttggcgaaagagagctccttttcatgccatggtgggtgaggaggctggctcaggtggagagcaggaggag
aaa Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr3 40216627 40216628 1001011 0 - Ya5-MLS26; RIP_Alu_chr3_040_01 GGTGTGACCAAATACCCCTCAG ATACCCTGACCTAGTGTACCCATTAG SINE Alu Ya5 ccttaatatccaacagactcctatttaaaaatcctatatagagaggctccagacaggctcccaatactccccaagattgaatataaaactttgttggatt
tatgcacatttttttcctccctagagagaagacctagagcaagcttattcaacccgtgccccatgtggcccaagaggactttgaattgagcccaacacaa
attcataaactttcttaaaacataacaaaatttttttttgcgatttttcttttagctcatcagctatcgttagcatattatgtgtgacccaagacaattc
ttcttcttccactgtggcccagggaagccaaaagattggataccctgacctagtgtacccattaggtcctcaaaagggcctatgatAAAAAGAAAATGTA
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAATGTAagaggcacaatttttcagcaaatgcctcattttctagacatgttctctgcaacgagtttatcttggaaggcac
ttctagcaattctttttctccaggggtatcagttgacagacatgtgactaagatttttcttctgaggggtatttggtcacacctgctctaaagtccttcc
aggctattgtttgtgcttgctgggctgctgtggacgtggaggtaagtggcgaggaatgggggagcaactgtgcctcagagcagctctgctttcagccata
ttatgatttgtcttctctttatttttatttttgtgggagatacaacctttggtacaagtgaaagtgcactctgctgccttccctttagatttcatttaag
ggaatcctctatg Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:MYRIP:NM:015460:10/17
0 chr10 16040973 16040974 1001012 0 + Ya5-MLS28; RIP_Alu_chr10_016_01 AACTCATAGAATCGGATGTAGCACTAC CTGGATTTAATGTGAGTAGACTTAGAAC SINE Alu Ya5 gtaattaaaacctcagagttagagtgagtatgaggaattgttttgcaaatgaaggaaataatggagaatttagatttttttcccagtatataaagacatc
taaatcctgttgtatgaaggataaactcatagaatcggatgtagcactacacttttgtttctgggaccacctaaaactaacccattctaaccaggtggct
gcctaatctccatctgtatccttagagatctcatgatttctttagatgatgtgttaaaaaacatgctaggcttttggcttcaccattatgacctgttcct
tatataagcaagaattattaaacgtgtggttagcaaatgcttcacaaaatcaagttgcttgcttctttgtatcatgcttttctagaaAAGTGAAACTTTG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAGAAGTGAAACTTTGgaggaaatacccaagaaacaagaatattgcctcaatattgtttttaaaaagtcagaaagcgtaccgtcgat
aggaataatactaggctttgattaaatagtcaactccttaaggatgttctaagtctactcacattaaatccagtcatttatacttttttccctctacatc
tatacaatttgacagtgatatttgatgtacctaataagcttctgcaagaccttaaatcaccatatggaactctactagccaatggttagtatgggcctgc
taaccaatacactgaccacactaaaacaaaagccgtcttatgttggaaacattttgaaaggtaaagactgaaataaaaaggtctttcttgtaattgttct
aaaaatgcaactaaca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr3 196096029 196096329 1001013 0 - Ya5-MLS29; RIP_Alu_chr3_196_01 CGCTCATAGATCTGATCCAATCTG GAATGCGTTGAGTTTCACAATGAC SINE Alu Ya5 tcattatttactttatattgactttgtaaatgctatttataggtgagccatgatgagtactacaattccttttctttctcctcacaactttttgtttacc
ctggagttaataattgccttcttttttcccatttgctaaggtttctatgtactaaacaccaatttaaactctcttgaatgtgtacattttctcttaatat
gttcaagcacactaagaattctgtcaatttaattttcttaaagaagccgctcatagatctgatccaatctgggagttctttcacctctttctagattcag
atttcctctgttttgaatcccatattcttttctttctcagctttctcaatcattttggtgaaacaagttctttctctccttttctAAGAAAGAGCGCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAAGAGCGCATAgtaagtaaatttttgttcctgtcctgacacaactgaagaagtttttagtttattctcatacttaattgatgtggaattttaggt
ggaaaaatatcatctctcaattttgaaagcactgtgccattgtcatgttgtttccaacttagtcattgtgaaactcaacgcattctgattctgattcctg
tttctttgaatgaaatcagtttttctctgtattagtcagggttctccagaaagatagaagcaataagatagatagatgatagatagatagatagatagat
agatagatagatagatagatagggattttttagcagaattggctcatatgactacagaggctgagaagtctcatgacaggctgctgtctttaagttggag
a UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr19 3945561 3945871 1001014 0 + Ya5-MLS30; RIP_Alu_chr19_003_01 GCACGATTGTCCCAACGAATCT GGACCTGCCACGATGTCTTGTATAG SINE Alu Ya5 gacaggctttcatcatgttggccaggctagttttgaactcctagcctcgagtgatccacccgccttggcctcccaaagtgctgagattacaggcgtgagc
cacagtgcccagcccagattggcttttgccccccactcagcagaatgcccttgagaccctcttgtcctttctaaattaatggcaatataataatatttca
caattcctgagggcttactgtgtaccagacactgagctaaatgctttatggccctacaatcaccctgtaaaatagatacaatttgtggtgcccagcctgc
acgattgtcccaacgaatctgccctcctgacatccgggtatgacctgctcacattgaacagggctgagctttataggatgttttGAAAATGGGAGCGTGC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAATGGGAGCGTGCtgtttcaggttaggctatacaagacatcgtggcaggtcccagtagctcacatcgtaatcccagccttttggaa
aaggggaggattgctcgaggctagcagttcaagaccagatttggcaacatagggagaccccgtatctaccaaaaaatcttttttttttttttttgagaca
gtgtctcactctgcagccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcttgcctcagcctccc
gagtagctgggactactggtgaccagaaccatgcccagctatttttttttgtatttttagtagagatggggtttcgccatgttggccaggatggtctcga
tgtcttgacct UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr16 15400476 15400477 1001015 0 - Ya8-MLS32; RIP_Alu_chr16_015_02 TACAGACGATTCTTACATGACCCAG CTTGGGGAACCAGAGTCGTAAC SINE Alu Ya8 cccaggaggtcgaggctgcaatgagctgtgatcacatcactgcacttcagcctggggaatagagtgagaccctgtctcagaaaaagaaaaggaaaaaagt
aacaataaattcaggtagcaaggcaaagctctcctattttaggaaggttgtaaaactgagagtactttaaaaattctttccaatccctgattaggaggga
gggaatataagagctttattagttaattacagacgattcttacatgacccagcaaaatattggtaatactgtgttccacttacccagcattaattaaatg
ctatgtagtttacgtgcctcatttcatgtgcccctccttacaattcgctaaggtgggtagagttacaaaggaggaaaagagcttAGAGAGGTTAATAGCG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAGAGGTTAATAGCGgacagagttcaacccaggtgtctgattcccaagccagagttgttaatctgttacgactctggttccc
caaggtagccccagcacaaagatcaattgattcctgcaatttccatgtaaagccttacgcaaacctccactctatccccttccacttcccctttcattga
aatgtgaggtaagggaaactgaaccagaaaaactgaaaaccggccaggtgaggtggctcacacctgtaatcccagcactttgggagaccgaggtgggcaa
gtcacttgaggtcaggagttcgagaccagcctggccaacttggcgaaaccccgtctctactaaaaacacaaaaattagccaggcgtggtggcgggcacct
gtaatcccagctactca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:MPV17L:NM:001128423:1/4
0 chr12 105415083 105415084 1001016 0 - Ya5-MLS34; RIP_Alu_chr12_105_01 CTTACCAGTACAAACAGCACTCCTC CAGGGAGGTGCTCACTTAATTTG SINE Alu Ya5 aaggaaaactttgcattatatgtaattgatgtgttccttaaaagtaggcatagggtagaaatcatattttggtaaattaaatcttttctactttatattt
tttgagacgaggtctcactatattgcccaggctagcctcaaactcctgggcgatccaccagctttggcctaccaaaaatctactttccaaattataatct
taccagtacaaacagcactcctcaattgttagttttctaaagttagattttcttgtatccagtttcttaaaaaaataaagcttaaggcatatagccttaa
tgcttacatcttaaggcaggggtgtccgatcttttggcttccctgggtcatacgggaagaagaagaattgtcttgggccacacataaaatacgcTAACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATACGTTAACACaaatgatagctgatgggctaaaaaaaaaaaaatttttttttttaaatcatgaaaaactctcataatgtttttaaaaaa
agtttacgaatttgtgtcagaccgcattcgaagccgtcctgggccacatgccgcccacgggctgtacaagcttgcctgaaggtatacttaatggagtata
ccttaaggctttgtctcccctatcctagtaaaaccattctttctctttaaaatagctcaatcgcatgcttaccctgtgatgccggatgtaacatagtctt
tccccaagcagttataaccatggcgaacgaggtcctcacacacatccttcactttactgcctccaaacgcagtgccgtagtggaatctgccgtccagcac
accggccttgccagcc Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:POLR3B:NM:001160708:25/28
0 chr10 107667550 107667859 1001017 0 - Ya5-MLS35; RIP_Alu_chr10_107_02 ATCTGTAGAGCCGCTGAATGTTC ATGTAGATAGACAAGTTAGCCACTATTG SINE Alu Ya5 gtctgaaggcacctcccatatttttgtcatcacactctcacatcaaaccttggcatgttatgtggtatgttttacatcctgcatccgacatttggaaggc
aacaagaattgcagtttgtccatgtgggaaattgcagtgtagacacgtgataagaggttgaaacctgtggtagagtatgacctactctgtgagtatgtgt
gtttgtgaatgtgtgtgtggttgatgggggcacagaagtgtgtaggcagagaaaggtttacttagtattagaaaatggcattacatgtagatagacaagt
tagccactattgtttagctttctctatggcaaccagctctcatttgaaactgtcacttgatttctcgttattgtagctgttgtttAAGAAGTGATTAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTTGTCTCAAAAGAAAAAAAAAA
AAAAAAAAAAAAGAAGTGATTAATGgacctgagttaatctgctctttcaagaaaggaagcatttcagtctcttagccaactacatggtagtaccgtttcc
tagctgataagtaggaaagggactaatgtatttgtaataaaatagatgcagtggaaccagagcaatgattttgcaaaaaaatgaacattcagcggctcta
cagatttctcatgtgaattagggctgattcggagaaaaaaaacaaaaacccaaatcactgtggattttctcagatgaatttcagtattcaggagggtctt
agtttcttccttagcagacaacaacacagacatccagtaagggagattgatagacctcagaaatgggacaggacacgggtctggacctcgtagtaaagat
gccaccacca UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr11 45992825 45993158 1001018 0 + Ya5-MLS36; RIP_Alu_chr11_045_01 TTCTTTCATTAATCTCCAAATGGC AAATATTTGCAGTCTATGTAGCCAAC SINE Alu Ya5 gataatggcctccagctgcagccatgttgctgcaaaggatattatgttgttcttttttatggctgtgtaatattccagtgtatatgcaccacattttctt
tatccaatccactgttgatggacacctaggttgattccatgtctttgctactgtgaatagtgtggcaatgaacatacaagtgcaagtgtactttttggta
gactgaggtattttcctttgggtatatatccagtaatgggattgctgggtcaaatggtagttttacttttattctttcattaatctccaaatggccgagg
ctgaactaatttacattcccaccaacagtatatgtgttcccttttttccatagcctctccaacatctgttatttttgactttttaatAATAGTTATTCTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA
AAATAAAAAAATAAAAAAAAATAAAAAAATAAAAAATAGTTATTCTGactggtgtaaagtggtatcactgtgcttttgatttgcatttctttgatgatta
gcaatgttgagcattttttcatgtttgttgactgcttgtatgtctcccttcaaaagtgtctgttcatgttgtttgcccactttttaatggggttatttat
tttgttgttgttgttgatttaagttccttacagattctggatattaatcttttgttggctacatagactgcaaatattttctcccattctgtaggttgtc
tgtttgctctgatagtttcttttgctatgcagaagctctttagtttaattaggtcccaaatgtcaatttttgtttttgttacaattacttttgaggactt
agccataaattctttgcctaggccaatttccaga UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:PHF21A:NM:001101802:5/18
0 chr10 85973240 85973241 1001019 0 - Ya5-MLS37; RIP_Alu_chr10_085_03 ACACGTTGCCAAACAGTGATTATAG CATTCCTCGTGTCCTGTCTTCTG SINE Alu Ya5 tttgaaataacactgacataaaattgttcagaccttattggcttgaatttgtaatactgggacccagggaaaggaagtgacctctgtgggccctggggct
ggaattcaaacctgcctcttccttcctggaaccctctgctctgttttcatacctcagctgggattacctttaatgctactctgtagggttgggcatatca
caaagccggggatggcctccctgggggtatcccaaagctgaaaagaaaaatcttcgtacattcctcgtgtcctgtcttctgttctctgtctagaagacaa
ctaggaatagctgggtaaaacttgggaaatatagtcatttgcccaggtatttgttatacattatgacaaaaccctggatggtttAAAAATACCCAATTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATACCCAATTAActgaattttcacattctgtattgttttgataataccttattggtttggcattcaatatcaatgaaagaaaattataggatttattgt
tgtagcctctttgaaaaccaagaaatgcatacaggtgttgtctttcgtggtgttctataatcactgtttggcaacgtgttatataatctctcagtaaaaa
tataagcattgaacacttactttcaaactaatgaggtaggtgattgcttatcatcccattttattgacaagaaaattgtcaagagaatttaagcaacttg
cccagtaccacactggataggagctccattagggatagcagcccaggcatgtggctccaggctctgaggaactgtgcatctggaaggtaagaaggca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:LRIT2:NM:001017924:2/3
0 chr7 139579883 139579884 1001020 0 - Ya5-MLS39; RIP_Alu_chr7_139_01 CTAGGCATATTAACGCAATAAAAGTAG CTTGCTTTCTAGACCTGAGCTGTC SINE Alu Ya5 aaagtagaaagctggggcgtggtggctcacgcctatagtcccagctattaaggagggtgaggtgggaggactgcttgaggccaggagtttgaggccaccc
tgggcaacataatgagacccccacctctaaaacaaaattagccaggggacggtggggtgtgcctgtagtcctaactgttcaggagcctgaggtgggaaga
ttactggagcccaggaattcctggctgtagtgagctatgattgtgtcactgtacttcagcctgggagacagtgagatgaagaaagaaaagaaagaaaaga
gaagagaagggaagagaaggaaagagaaagaaaggagggagggagggaaggaaggaaggagagaaaaagctgaaattaattgtAATAATCTATTTGACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
ATAATCTATTTGACTTaacccaatagatctaaaatactttaatacataatcaatgttgcaagtattaatgattacatttttttccttactgagtctttga
agtccaatgtttgtttgacacatacaacacatctcaatttggactagccagacttcaagtgctcaacggccccatgtggctagtggctaatgtactggac
agctcaggtctagaaagcaagggctgataaatgaaaaggaagcaaatagcatccattgataggaatacaagttgtgtaggatgtaagccactgactttga
gtgccgatttcttagttttattttagtgaaaataaaatcagttcacacccagtatcagttccctaaccctatattcccctaaggtcccagattactcaa Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr8 106733693 106733694 1001021 0 - Ya5-MLS41; RIP_Alu_chr8_106_02 TGGTTCGACATCTTTGCATAGC ATACTATTTGGTTGACCCTACTGTTG SINE Alu Ya5 ttcttgaaagactgcacaagctaaacgtagctgacctaaagaataatcattcttgaaaatctttactaacaatgtataccagacaatgatggtgagtact
agatttctaaaggaaaaactggcttaatttactgtcattgaatttcaataggaggtagctagaaatacatgcataaatagatgggaatagcttatctata
tgtatttctgatccatttccttgattggaatactcttgcttgcaacaccatggtatactatttggttgaccctactgttgtttgacagtcttcacaggcc
tcagacagcctcatgagaatacaacttctctgaagtactactgtatgtcaggcatataaggtgacgttttaattttaaaaataggcttcaaaaatGGGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGGGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCC
AGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGA
GCGAGACTCCGTCTCAAAAAAAAAAAGGGGCTtgacttctacatcagtggtaaaatgaaaagcctccaatttcaggtattagagcaaagagtagaggttt
ctgactgaccttcccctagtgaagagctgaaacagacactgttactatttaccagtaaagtgggtccaaaaagaaccacccagtaatagcaagccaatga
cttggcatggctgctatgcaaagatgtcgaaccaaaccctgtggtttgacaacatcttttgcatctatgtaggttttgtttcaaattcttgtatacactg
ccatgctgactgatgcagcataatatatgctatgtatatatgcaacatttcaaaggaatcctcttcatctagattctctggtattttaaaaatctcacta
aggaatgttacattttttgagacatgg Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:ZFPM2:NM:012082:5/8
0 chr6 121496787 121496788 1001022 0 + Ya5-MLS44; RIP_Alu_chr6_121_02 AGCCTCTGTCAGAAGCAATAACTAG CGAATTAAGTCTTTACCTAATTCTTGTC SINE Alu Ya5 cctaagaaaactgctacgtattgctgcatgatcctcatgattatcatatataaaatcagatttatgtaagtatttccctatttgacatttacgtcagaaa
aaccctttttataccaaagctacatacatactctctcatacaaacacatgaatacacagatacatacaccaaacacatgtggactcacataaatacacac
ataaagcaaaaagctcttttgttgaaagcatatgtaattctgctattcagtactaatctattttatttgaataccaagactacaatgatacgtttcacaa
atagcctctgtcagaagcaataactagagaaaaattatcaagcattaaatcaaaagagaaaatgattctttttaataaaaacacttAAAACTATAAACTC
GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACAA
AAAAAAAAAAAAAAAAAAAAAAAACTATAAACTCataaaatttcaacacagctaataattttactgaaaattatgttattgctaacaaaaaagttttaat
gttaaatgtatcttgacaagaattaggtaaagacttaattcgacattattgaaattgaatttttattgttttcatttaaaatatccacattacatattgc
caagaataaaatatctacagtctaataagaaacactagtgacacatgattgcaaagataatgcagttttttcatctttgtttcctcctgttttcttcttc
tactcatgtgtaactccatcttttacctccttcaaacaaaggatgttactacctccttcagaggacatccatatagccctttcataggctatctgttatt
tataaatctgttttcttttt Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:C6orf170:NM:152730:24/32
0 chr13 53422085 53422391 1001023 0 - Ya5-MLS46; RIP_Alu_chr13_053_01 TCAGTAAGCATGAGTCTTCCAGTTC CCCACCACAGATGGCAATACTC SINE Alu Ya5 tagagactgcctacagtccttggcttatggacctgtccatcttgaaaaccaacaatgtctagtggaatctttcttgtatcccattgctctgacactgact
cttctgactccctcactatgtttgggatcactcctgtttacagtggcccatctcaataatccagataaatctccctatttaatgtcacctgattagcaac
cttaacttccctttgctatataacataaaatacccatagtttctggggaccaggatatagaaatctttgggggactattattgcccaccacagatggcaa
tactctccaaatatatttagagatttagtgtaatccctatcaagatctcagttggcttttttcaaatttacaagctgatcttAAAATTCATATGAAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTCATATGAAAATAaaagggactcatgatttccacaacaatcttgaaaagaaaaaagaactggaagactcatgcttactgatttaaaaa
gttactacaaagctacagtaattatgattacatggtattggcatagggataaacatataggttaaagaaattgaattgaaaatccaaaaagaaattcata
catttatggtcaattgattttcaacaaggatgccaagacaatttaatgggtgaaagaatagtcttttcaacaaatgatgttgacaataggacactgggaa
ataaaaagacatacaacccccaaatttaaatgtgcaaaggattttaacacacatttttccaaaaaaggtatataaatggtcagtcagcacagaaaactgg
gcttaac UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr4 188923162 188923163 1001024 0 - Ya5-MLS50; RIP_Alu_chr4_189_01 TAGAGGGCACACATTGAAGTTTTC CACTTACATTTAGAGGTACCAATGAC SINE Alu Ya5 gccagctcgaatgcctggctttatatcccaatccttgtccctcccgctgcgctctcaggcaatagatgattggctatttctttacctcctgtttttgcct
aattcgcattttagtgagctctctgattggtcaggtgtgagctaagttgcaagccccgtgtttaaaggtggatgtggtcaccttcccagctaggcttagg
gattcctagttggcctaggaaatccagctagtcctgtctctcacctccagatcctattttcccctcacttacatttagaggtaccaatgactatttccag
tagtatggagagcattgacagttcatagcatgatctggcagtagaaatttgcaaaatattaccattagattcccctaatcaaccgcttatAAGAAGCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
GCAGGgtgagtgtgtatacaatattatacaatattcttcaatatttttgtcaaaataatgagtataatgatattggctgtttgctcctaatgtcactgga
caatgtgggaaaagaaagaaataagctcccagctcaagggttcaatagatgacctgaaaacttcaatgtgtgccctctaggaggcctcatctctagccat
agggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggcctcatctctctagccacagggctgagactgctgaaaatcaag
cctgaatcttgcctcatctctctagccacagggctgagattgctgaaaatcaagcctgaatcttgtcctgtgaccagctcaggaggactcatccc Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr1 220885815 220885816 1001025 0 - Ya5-MLS51; RIP_Alu_chr1_219_01 TGGAGAACTGTCCTTGTTGTGAGTA AGTTGAAATACAGACCCACCTAATTC SINE Alu Ya5 atgttggctaagctggtctcgaactcctggcctcaagtgatccgcctgcctcggactctcaaagtgctgggattacaggtgtgagccactgtgccggctg
actggttatttctttaggatcgattactagacatgacattaatacaatataaaaggatataaccatttttaaggcttatcatacacatcatgaaactatt
tttcaggatggctctaagaattcctagttctactaacagtgtacatatgacctatctaattctttcttttcatcctttgtgagttgaaatacagacccac
ctaattcttaaaatttagactttgatatgagacatataaactgaagttttcccactgagattatacatgttgtcttattcacttAAGAATTTACCAACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTACCAACACaaaaattatactaaattattttacgaggttagcttgaattaaaagcattaatttctgt
tcatattagaaactgaaaaagagacaaaaggactgtgattataaaaccatacttgaatttatgagttaaagtatgcattaatttactcacaacaaggaca
gttctccataagaaaatggcaaacgaagcaattcccaagaaggcagtgataaatacaggtttccatggcagtccataaaaatcaggcccaggctgaacat
catcaggcaatgtagcaactagctgaatgttagaaataatgttagaaataatgagaaaccttaaagaagcttaccataaagcagtcacaaagactcattc
acagaaattctaaaccaactctatca Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:MIA3:NM:198551:7/28
0 chr4 148475498 148475499 1001026 0 - Ya5-MLS57; RIP_Alu_chr4_148_01 GGTAAACATAGGCTTCTGATTCAAG TAGTTTGGCCTGAAGGAAAAGTG SINE Alu Ya5 gcaaagatttctttctgaaagatggtagaaacaatttttcctttgatgttgtctctcagcattctgaatttgatttgtgaaggtattttgtgcagcacat
caatctttgctaaaattcttcaagtttctctttgcaaaaaccagcagaaatttaccagagtaaattatgaaacattgctgcagttgactccaacaaacca
gagttccacaacaaaatgaatgtacaatacaaaaaataaaatttagtgggccttgttattgttttacatatagtttggcctgaaggaaaagtgaaactaa
gttataaattaagttgtatatcatctaatagaatgaggttttgaagtagtaatagaattttgaaactctctgaattcttgtctaaaacAAAAATCATCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATCATCCCttctttttgctgtattctcttgaatcagaagcctatgtttaccagctgctctaagtcactctttcctttattgcagtgt
ttgacactataataccttaaagtgggggttgcttatcttgggagtggtggtaaatgttgagtgaatgtgggaaggaattatagatgtttaacaactgttt
gcaaaggttccagggttcttgggagggaacaggaaatattaattttatactagctcccaaagccaaaaggaagaagaaaaaaaagaagcttcttaatctg
tttagattacctctaaggagatgagtcatgagtgaaattcaggattaatatacaagaagagctcctaagagaccgtctagactacaggccatctttctct
ttcacagaa Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr1 118882228 118882229 1001027 0 - Ya5-MLS58; RIP_Alu_chr1_118_01 GATTTAACGACCAGCTTAAAAGATTC AATAGATCATTATGAGGAAAGGCATG SINE Alu Ya5 gctgcacgaatacaagggtaatacagacatactgcttttatccagtaaatattgggataaaagtataaaagtcgctctaacacaagattaaacatcataa
atgttttaagagggctataggccaataactatgaagacccaagaaacatttgatataggtctttaagagatgagggaaaagggcatttctagaaaataga
tcattatgaggaaaggcatggtgataggatagcagagaacatctctggggtataataatcaatcctttatgtaccagtatataaagcacctactagtaag
cattagaagatctggggaaagtgaattaattttttctgggattggatttacacagaggcatgctggagctggctcacaccagcttatAAAAGCTGGTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGTTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGCTGGTTGCtaatattaaagaatcttttaagctggtcgttaaatctttggtagcttgaaattggccatcttaagcatatttactctactg
aacatgtacatgctacataaataaatctggctttcattctctctcttcctctttctatctcccttccttctcctttcttctttctttcgtactcttttcc
agataaccggcacactactggatttatgtaacaccaggaattagattattatggaccctctgaacagttgaattgtttcagttttcattcagatttaaaa
tgttgcttgtgggtctactccctagcctgatagtttgcaagtgagaagagccatggaaactgcagaagacaggagctcctgactttctggccttcctagg
atcatg Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr1 80966942 80967256 1001028 0 + Ya5-MLS59; pAlu1-80585314; RIP_Alu_chr1_080_01 GTTGAACTAAATGCATAGCCACCA GGGAACTTTTCAGTAATTCGTTTGA SINE Alu Ya5 catagtatttcagggcattatctctcaagtggtaccttaactgagccttcagcaggccattccaatgttctatctagctacatgctactgaaggtaaagc
atatttaacgtgaaagtatatattttttatgaggacaaattgctctctccttcattatggaaagattaacacttccatctgatggctgcgtggtcagcca
ggaaaccagttctatttcagaggctcaatattggtctgtgctgttggcagattgggcaataagcggtggtggtattccaaccagccattttaagaagtct
atatggttgaactaaatgcatagccaccatctttaccaatttgtaaatgtgcctattgagcaagcaaggggctagggaatgaaaggagAAAACTGGCTGG
TGGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGTG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACTGGCTGGcatccagaggaagggctgtgacatcaaacgaattactgaaaagttcccctgcaatagacatttcatgagacta
ttttcatgggaatatcttcacattctgttgattcagaaaggttcattcacattttcataatttcaacctccttgttacaattcttctagtcctgttcttt
ttaggcaatctgtcttagtctgtttgatatgctataataaaatactatggactgtatagcttttaaacaacagaaaattattttatacagtccagaggct
aagaggtccaatctgcactaacagatttgttgtcaagtgagggcctgttcctcctaaatggcaccttctagctgtgttctcacatagtggaagggtcaag
acagctgcctgaggc UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 16067672 16067977 1001029 0 - Ya5-MLS64; RIP_Alu_chr12_016_01 CTAAAATACATAGGCTCTCTGAAGAGG CAGCAGTTTCCAGCTTACTGATG SINE Alu Ya5 atgccttttgaaactgtcccaaagtttttggatgttctgttctgtgggggtttttcttcccagttttttctcttcacatttcagtttaagaagtttctat
tgacctatctttaaggtcactgatttttttcctcagcagtttccagcttactgatgtacccatcaaaagcattcttcattttgtcccagtgtttctgatt
tctagcatttcctttcaattcttacttagtttccatctctctgattctattatgcatcttttttcatgttgtctgttttttcattaaagctattaacata
ctagtcatagttattttaaattctctgtcagataattcccaaatctatgccatatctgaatctgattctgatacttgttttctctataaagactgTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGACTTTGAgttttttttcttgcctctagcatccaatgtattttttgttgaaagctatgcatgatatattgggtaacatgaacaaaaacaaatgggcc
tttggtgtaaggttttatgttaatcgggcaaggagttgggctgtgtttaaggtttgctgtagctgccatagtcttcaaatttctatagtattcttgtttt
tatctcccctctttattctgggcttccctaaaattcctcttcagagagcctatgtattttagctctgtcagctgtaatcttatactgaaaccatgttgct
gtggtggtaacagatgagggaggagtattctatagccttagtattaaatctcagtctttcagtggtcctgtgtccctgggctgtaactgtcacaaatgtt
tcttag UCSC - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:DERA:NM:015954:6/9
0 chr14 34197792 34197793 1001030 0 + Ya5-MLS65; RIP_Alu_chr14_034_02 AATTAGAACATGTGGCTCCCTTATC TTGGTCTCCTTCAAAGCAATTTAC SINE Alu Ya5 tgcagccctgtcagcatgttgattttagctccttgatttcagtgaaggccctttttcacttctgacctccaaaacaaaacgataataaatgtgtgttttc
ttaaaccattaagtttgtggtaattcagcgcagcagcaataggaaacaaatatacatggcattctcaattctgtgagctattccaggatccctgaagcaa
atcctcctttttacttaagctaatttgggttggattttggtctccttcaaagcaatttacaagatctcttattataaaacagtacttctcactaggacaa
aaatcagaccttcagaaataaaatacatgtgctataccctaaacatgtcatgacaagatttcttctgagtgatgaatggacaggAAAAAGAAATTTGAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTGAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACGGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAGAAATTTGAAGaagtataacaaactagcatttgacaggtaagagtatgtcactgaattaaaatgtagataagggagccacatgttctaatttccctct
gatttcttctttgtctcacgggttatttggcagtgtgtgattggattccagaaagatattccaaatatctttctgttgttgacttctaatttaattttat
tgtgttcacagaagatcctttgtattatttgaaacttttggccaggtgtggtggctcatgcctgtaatcccagcactttgggaagctgaggggggaggat
cacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaaaattagccgggagtggtggtggcac Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intergenic
0 chr13 54336089 54336090 1001031 0 + Ya5-MLS69;1104685361072; RIP_Alu_chr13_054_01 GTGAGATATCTAGTTGTGTCCAAGCA;NA AGAGGATACGAAGGAGAGGAACAT;NA SINE Alu Ya5 ggctgcttttccaaatttttgaagtattttgaattctaacatgatactgtcatccaaggtgttacccatttcacccaacttgatgtaatcaacactttgc
aagcgtatgctttttatgaaagcttgttacatcaaagaaggaagtgagaaaactgaaaaaggttcctgaagctcagaaagatctatgattataaagtgta
ctaaaattctgcaacagtgtcttgaagaaatcagtttcttttagaccactgaaacatcaagcacccttgtggcattgtgagatatctagttgtgtccaag
caaaacagcgtatatcatcaagaaaacacctgcactcagctgtaaatattttaacaattggttcaatgtaattttgcaacatttAAAAGTTCACCTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGCGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGTTCACCTTTTTatacatatgtatacatatactttttatatataaatgtataaatatatatacttaagctttatcctctaagtatccccaaa
gccaaaatgttcctctccttcgtatcctcttcctatctctctggattagtttcactagacagagataagaaaatataattgaagactataccaactttag
aaaaaaaaatacctatcttcagatactggctgtggcacttgttagctgagtgacctttatcaaattacttaacttcttttatctttagttttcttatctg
caatgtagggatagtaatacattctcatggggttagcagaaaaataattagtctattcacagtgccggcatataacaggtagttagtatatagaaactgt
aata Other;Venter - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 109874813 109874814 1001032 0 - Ya5-MLS70; RIP_Alu_chr13_109_02 AGTTACTGGATGCATTATATTGAGGA CTCATGATCAGTTACGGTTACTTTCA SINE Alu Ya5 ttactccgggggctcccctttcacccttgtctcctttacgtccctgcagtcccgggaatccttgtaatcctggtggcccattgtacccctgggggcccac
tggcccaggctgaccctgtgggaacaacaaaggttcaatttccacgattaatcacaatacatactcatgatcagttacggttactttcaaaactacattt
ttttttttgtttttaaagagctataatctacagggaacattatatgtaaactatcgtctactgccatgatagctaacaaaagaagtcatagagtttaaga
agagaaaatatggaatgtgagaaaaaaattatcctaaattactaaagtcatgtcattgtgaaatgataatactgggttgggatgAAAGAATTAACTTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAATTAACTTATTtgggttctttttaaggtcatttcagtataaaaaattttccaaatgaatttctacaattttatctctattttcctcaatataat
gcatccagtaactgtggaaatgtgtattgcattcaaatatcaaaaagaccctcagatgtttaagtggttaatctctccttttgttcacatagagggaaaa
aaaagagcttctgaaacatataaaaatgtttgtccacactaaataggatggctgttattaaaaaaagttataagtattggtgaggatgtggagaaatcag
aatctccgtgcgctgctggtgggcatgtgaaatggtgcaggtgctttggaaaacactctggcggctccttaacacattaaaaaaagagaatcactacggg
a Other - Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA NA intron:COL4A2:NM:001846:4/48
0 chr10 118267144 118267459 1001033 0 + Ya5NBC205; RIP_Alu_chr10_118_02 ACATGAAGGGCCGACTGTAT TGCTGCTGCATTATCAACTG SINE Alu Ya5 tcaaattaaactgtagttgtcccttgatagcctcagggattggttccaggctccccccacccaggatatcaaaatcctcagatactcaagtcccttatat
aaaatgttgtggtatttgcatacaacctacatatatgctccagcatactttaaatcatctcaagattactcaaaatacttaacataaggtcaatgctatg
taagtagttgctatgttttattgcttttaggtatattatttttattgttgtattgtcacttttattttttttttctgcaaatattttcgatctgcagttg
gttgaatctacggatgtggcactgaccaacatgaagggccgactgtattaccatggcactgaattttctgagttaaagctacttaaaaatatcaccgtTA
GGCCTGGCGCGGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGATGGATCACGAGGTCAGGAGATCGAGACCTTCCTGGCTAACACGG
TGAAACCCCATCTCTACTAAATATACAAAAAATTAGCCGGGCGTGATGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGCGCGGCGGAGATTGCAGTGAGCTGCGATCGCGCCGCTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAATGATAacaaagaatttagaatattgcagaaactcagttgataatgcagcagcagagtttgagaggtcttgctacaatttggaaaaag
ttctactgtgagtaaaatgctatcaaacatcattgtatgctctagagaaacactttgtgaaaggaagagtcaattgatgcagcaaacttccctgttgtct
tattttaagatattagccacagcctcccacctttgccaaccactaccctgatcagttggcgaccaacactggggcaagacctccagcagcaaaaagatta
tgactcactgaaggctcagatgatcattagcactttttagcaacaaggtatttttaaattacagtatgcacattggttttttagacataatactgttgca
cccttacagtgtagca UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
E:Insertion-specific detection:PCR;C:Reference NA 50 435 81 NA intergenic
0 chr7 83588894 83589190 1001034 0 - Ya5NBC7; RIP_Alu_chr7_083_03 TGATGGATATTTGGGTTGGTTC GGACTGTAAACTAGTTCAACCATTGTG SINE Alu Ya5 tgatgatgagcattttttcatgtttctgttggctacataaacgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatggggttgttt
gacttttttcttgtaaatttgttttagttctttgtagattctggatattagccctttgtcagatgggtaggtgtggagaaataggaacagttttacactg
ttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcaaggatctagaactagaaataccatttgacccagccatctcatta
ctgggtatatacccaaaggattataaatcatgctgctataaagacacatgcaaatgtatgtttattgaggcactattcacaatatcAAAGACTTGGAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GACTTGGAACCaacccaaatatccatcaatgatagactggattaagaaaatgtggcacatatacaccgtggaatactatgcagccaaaaaaaggatgagt
tcatgtcctttgtagggacatggatgaagctggaaaccatcattctgagcaaactatcgcaaggacagaaaaccaaacactgcatgttctcactcatagg
tgggaattgaacaatgagaacacttggacacagggtggggaaacatcacacactggggcctgtcgtggggtggggggagtggggagggataacattagga
gatatacctaattgtaaatgaccagttaatggtgcagcacagcaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatataccc UCSC - Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA,Deininger PL. Potential gene conversion and source genes for recently integrated Alu elements. Genome Res. 2000 Oct;10(10):1485-95. PMID:11042148.
E:Insertion-specific detection:PCR;C:Reference NA 60 522 216 NA intron:SEMA3A:NM:006080:3/17
0 chr10 92805379 92805684 1001035 0 - Yb9NBC12; RIP_Alu_chr10_092_01 AACACCTGAGAAAGGCTCATTG GCTTTGGAAAATACCTAAGAAGCAC SINE Alu Yb9 ttctcagaaagaagcaaacattaatatgtgttgggcactgtctgatggcttggctctaagtccagggcagttgcccttgtcttctaagtactgtacagag
cgaaaaggcttaccaaaatccaaaccaccttgaattaaagaaatctgaatgaggagcggcaccattctttgtatgtgtgtttttaaagtctttgctgtgt
tactgaatgaagaaatgcagtatattatacctctattgatgtaaacgagcctcaaacatctcaattccaccctcttcctaccccacactcatcaaatgtt
atgactgctagtgacactttattcaaattacaaaccatagtttttgctctaaaaaacaaaacacctgagaaaggctcattgctttAAAATCAAGAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAATCAAGAATCTGtaaaagcaatgccaccccaatcctaaggtgcttcttaggtattttccaaagctctttgctcttttatactacagcattt
tcaggaggagtcattaggtactcccaaggtccaagaaataactaaaaacaaaaaataacctgagactcttttctgcattaccaccagcttcccagcacac
taggtcaccttttacagcagtaagcaaagcaacccatgccacaaaaatcttcacaaaccaagaaggaaaggtacaaaaagaattatattaaaacaataac
gtacatttgtgtgtatgaaggagggatatttaaaaatttaaaatattatatcatcacaagaaagagcagacattccttgctctgcccttgggcaaccaag
aaaatt UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA 55 414 93 NA intergenic
0 chr14 90254948 90254949 1001036 0 + pAlu14-89175235; Yb9NBC22;1104685286116; RIP_Alu_chr14_090_01 TGCACAACTATACACCAGACACTG;NA TTGTCTCCCATCAGTAGAACCTAAG;NA SINE Alu Yb9 gtgttatttcttgctaaggtcaaggaaattgtttgatgcctggcactcaccattctcctttaacagaatgagatcatatccaggaagacctaggtggtcg
tagtgtatctcccgctttaccacaaagaaacaagaataggagccgtaagttccatgaagccggtctgggctgtcctattcggccttagatccccagcacc
tagcacaacgtgcacaggtgttacatcaactacttttacagacaatatgcaactctcagatagacatctatgagccacagccgtctcagctgaaaatgaa
aagtacatccatttattcattcattcatggatgcacaactatacaccagacactggggcatacaggtacagatctgttcccacgcAAAATTGACCAAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAATTGACCAAAATtcctgcccaagtggaacttaggttctactgatgggagacaactgtaaacaaattaaataagacaaaatacaaat
gggggcaaagggttaaattccttccctcttcttttgagaatttaacctcaggttggccgggcacagtggcttgcgcctgtaatcccagcactttgggagg
tccaggtgggcagatcacttgagcccaggagttcgagaccagcctgggcaatgtggtgaaaccccgtcgctacaaacaaacaaacaaacaaaaaaacaaa
aattagctgggcctggtggcacgcacctgcagtcccagctatttgaggttgacatgggaggattgcttagccctgggaggtcaaggctgcagtgggccgt
gactgcaccac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 55;NA 435;NA 110;NA NA;NA intron:TTC7B:NM:001010854:5/20
0 chr1 183203677 183203982 1001037 0 + pAlu1-181457211; Yb9NBC50; Yb8NBC299; RIP_Alu_chr1_181_01 GTTCCACAAGTACAGGAGAAAATGT GAAGCTCTTTAGGAAACCAAATCTC SINE Alu Yb9 atgaaattagaaactacctttacaaattgggctcctgctattgcactttctacctgtgaacccagttcaaaccttcccagagattacaataaagtaaaaa
gctcagtagttcacagtaaaagataataaaaattactattgtcatcctagtagttactattactagagcacctttgatgatgtggccctcttacagccaa
cgtccatagtaaaaagaagtttttcatcaagaccagggcttgattcatcatctaactccatgggatttatcaaggcttgtattagaagccacaagaggga
aagtcactctttgttccacaagtacaggagaaaatgttaatctgtctcagtctactgtcttttctgtctttgtggttgactcttAGAAATCACAACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAATCACAACTCACaaaatccttcatggctttgcaacatgagatttggtttcctaaagagcttcccatttctaaagtattggtttcaattca
caaagaccaaaggaaatagaaagtaattattgatactagcaactcctaatttgcagtagttttacttatttgaaactcctgctagcttccttggtagtct
ggcatgcttgaaggcattttttttcacttaaaatataaagtgatcaatatgcatttgtgcactattcatagtggaccctctttctcctgtttcctccatc
cccactactctggaggagctgcaatttctcacttcttacaaaagcctattcatgtctacaaatttagagctgagacaaatactataatctttacccactt
tctact UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 55 460 138 NA intron:FAM129A:NM:052966:1/14
0 chr16 64077514 64077821 1001038 0 - Yb9NBC7; RIP_Alu_chr16_064_02 CAGTAAATGATGGGAACAACCTTC CTAAATGTCAAGCTATGCCACAGA SINE Alu Yb9 gttttagacatgctaaaacatgttatatcaaaacatcacagcaaccctatagaagaagatgacatgatggctactatctgatgaaagaaagaaggtccag
gcattgctctacagcaaatcaacagtaaatagatccaaaagaggcaaccgtggaatgcactttaatctaagtcaatgcagcacctctcgtctttatgctt
caggtttctgcatacagattactcggagcctgccaaagagtttcatcagtctctcctgtgctttgggtttctaatatgctctaagtcaacactaggattg
tgttgatctgtgttagaagctaagagcttgagcaagctggagtccccattgcagtaaatgatgggaacaaccttcgaacttgccattAATAAACTGAACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAATAAAAAATAAACTGAACTgttcatgtttctgtggcatagcttgacatttaggccgagagtttgtaatgccaataaacagctcaggatgtgatgtgat
atgtgtgtgtgtgtgtgtgtttggctgtcacacaattaaaagcttaactgagaaggctaaagctttcattaaaagccatcgactttcatttatttagtgt
tttggggacctggagagagtacaaatcaagaataggcctccaggggacatctttttagacatgagccaatgatgctagtctaactattggagtacaggca
gccttatttttaggttaagaaaaaaaaaaaaacgaatgaacaaatgtggtcatttgaagaaatcagacatgtgattatttttccttcactacaaaagtat
ctgagaga UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA 58 403 83 NA intron:LOC283867:NR:027755:2/9
0 chr7 42516240 42516547 1001039 0 + pAlu7-42256394; Yc1NBC1; RIP_Alu_chr7_042_04 AGTACGTGAGGTTTCTATGCCTTG GATTTGTCCATAATAGCCCCTAACT SINE Alu Yc1 caaaggaaaaccataaggaaatactcctttgcatccatgaaatggctaaaataaaaaagactgatatgcaaaatgcggtaagattatggagcaacaggca
gtttcatacattgctgtggggagtgtgaagtggtacagtcactttggaaagttgtttggctattcttataaagttaaacatacatctacatgagaagcag
caatcccactcctaagtatttaccaaagataagtgaaaacatatgtccacaatagacatttacatgaatgtttatgtaagatttgtccataatagcccct
aactggaaacaatgcaaatgtgtctcagtagaaaaatggataaacaatttgtggtttattcttacagtggaatactattgagcaatAAAGAGGAATGAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAGGAATGAGCtactgatatatgcaaggcatagaaacctcacgtactgcggactgaaagaggcttgtgcttacacaagacatataatgt
acaattccattaaggccaattaaggtcaaacataggcaaaactaacccagcaggatagacactgagagctagggctgcctgtgggaagtgaggagccctg
gcaaggacatgaggaaaccttctgaggtagtgggaatgtgcgacatcttgtttgtggtgatggatacaaaagttgacacattcatcaaagctcgccacat
cattcacttgatatctgcatatttcactcaaagtaagttttatttatttatttatatttattcatttatttatttttaagatacagggtctccctctgtc
acccaggc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 481 159 NA intergenic
0 chr2 89641180 89641484 1001040 0 + Yc1RG125; RIP_Alu_chr2_089_01 TGTTCTCTTCCTGTCTCCATTTC CTGTTTCTATGATCTTGAAGGATGG SINE Alu Yc1 cccaagactgaaaaactgaagtgcaaagaagaaatgtagcaaaaacctgggtccttttgctgtcaccaagttgctgcaccaacctcaaatgttccaaact
tcagaattcttatctctgcttcagctattgctatcatttcttgcaattgcttctaaaattattttaacttatccagaaaaaatattcaagggaaagagac
tgactgggttcttatttgtgtttatgggagtctaagacacaaaaaaacaggaaatcagaaaaagtgatgtcttctcctaacatctttgtcattctatgcc
catggttagagaaatccaaaccactttgaagaatgtataaattctgctctcttcctgtctccatttctctttttatatcttaagcatAAAACAGCTCCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAACAGCTCCTTgttcttcttaatgtctccatccttcaagatcatagaaacagaatcatggttaagaaactggaaaaaacagttggagaaaaca
tgaaatctagggattgtatgcatttcctctacactaatgtggtgtttgcagggttcccctgcttctcagttgtttttgctgaagatgccgactgttccag
ccagattcctgtcagaggttgtgtttggagggtttaaaagaaaagcttccaggggcttagggctgaattccaaaaaggatagccggagagtggctctgga
ttcccagcaaggagaatgccagattgagtcttgggaaagactatggacatactggatcccaggcagagacttgtagcagggagaaagcctccacagaaaa
tccct UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA 60 415 97 NA intergenic
0 chr8 15097777 15098076 1001041 0 - Yc1RG60; RIP_Alu_chr8_015_03 TCCCACATTTCAGTGTGAATTT GGCATTTGGGATAGTTCCTG SINE Alu Yc1 cattttaggggtggtttcttctgtagtcaaatgaaaactttggcaagtcttaacacccacaatataatacaatcttagttttaacctaatggagtataat
aaatgatgctatgttatcatattcttttcacttgcaggatgataacatttcatgtattctagctttcatgcatgattcctaagcttactggacttttgat
acctgcactttttcactggggtgttttcatttgggagcttttcttgagttaaatggagacaacaggagattgtcaaatccagttttgagcaaaacaaatt
ttggattaagaaaagaactacatctttgtatttaaaacagtggcatctgatttataaggtggcatttgggatagttcctgcctttAAAAAATCGAAGCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATCGAAGCCTaaggatgtataaaacccattataaatttataaagagtagctattagcttgtgttaagtctcatttgctataaacatacagtttaa
atgacttgttataaattcacactgaaatgtgggaggtaagttttttttagatgaaaaatcggttgtcgtaagaccgagtattatacttgaacataccaaa
tggcaacatttcagagtaatcctgcagagagacgtttagttgccttatagaagtatttcactggggtggcacactaatggaatttgagctccaatcaggc
acggactcttgtcaccaaagggttaaaaatacaacccatcattttagcattgtgaaagaggaggctgatgacagcaagaaacaaacttgcaggagacaaa
UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA 60 551 216 NA intron:SGCZ:NM:139167:1/8
0 chrX 44189868 44190180 1001042 0 - Yc1RG99;Yc2NBC19; RIP_Alu_chrX_044_01 AAAGCACTTGGTACAGAATCAGC;GCTTAAAGCACTTGGTACAGA CCATGGCGAAGTTAATGAGAAGT;TGGCGAAGTTAATGAGAAGT SINE Alu Yc1 cctcctagacttaagcaatcctttcacttccacttcccccgtaactgggactacaggcatgtggcaccacaccaggctaatttaatttttttttttttaa
aaaagagacagggtctcactatgttacctaggttggtctggaattcctggcaacatctggaattcctggcaacaagccgtcctcctgccttggcctccca
aagtgttggaactacaggcgtgagctactgcacctggctgcctatgtcttgtaaagcattaccctataaagctattattaaattgattacatgtcttgcc
actgatagggtttgataaaagggatttaatgatacatcccctccaaggttctcataaagcttaaagcacttggtacagaatcagcttAAGAAATGGTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAATGGTGTTattacttctcattaacttcgccatgggctgcattactagtaagtggcaaaacctcaattggaatcaagtttgta
actgcagttacagaattccttctcttcttgcccaaattctagcctcaaacagtgaggggacaggctccttatattagctgggagttggtccctcatgtca
tgtcccagactccttgattctcacaactctgcctgctcttctaactctactatcttcatcaggcacaaatcatgtgaacccatcaacatttgaaatttga
cattttaatccttaaaccaatgcacagaggactttcataattatgatttgttttattaagttgtcatattgtctttcagatatggcgcttctgggataac
aggaactaggtaa UCSC;UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
- Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA;NA 60;NA 390;NA 64;NA NA;NA intergenic
0 chr7 104402451 104402770 1001043 0 + Yc2NBC5; Yc2NBC1; RIP_Alu_chr7_104_01 ACATAGTGGGCATTCAAGAG CTTAATGTTTCCATTTCTCCA SINE Alu Yc2 tagagttagggctgactgagttggggagtgggtggagtgtaaaatggcagcttgaccaggctgggccatagccactcatctgaccactttatctctcacc
tcttcccccactttggccttgggaaggaggcatcaaggagagtgtgaaggaccaaggaatgctagggatagttggtggccacttctcgacagtaaccctt
tacctaatgtatcccagctgatatttctcaaaacatgttgctatgcctcactcattaggttccactccatggggacagggagcatgtgtgtcttgttctc
aatacctgacacatagtgggcattcaagagtacttgaaggaatacagggaggaataattgattttcataactatcttagggattAGAAAAATCAAATGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAATCAAATGTAactaatttccattttacagatggagaaatggaaacattaaggttttaagttgtttgggaggccg
aggcaggcggatcacaaggtcaggagatcaagactatcctggccaacatggtgaaacccccgtctctactacaaatacaaaaaaattagccaggaatggc
agcgtgcacctctagtcccagctactcgggaggctgaggcaggagaattgcttgaatccaggaggcggaggttgcagtgagctgagattgagccactgta
ctccagcctagtgacagagcgagactccgtctcaaaaaaaaaaaaaaaagattttgtgggggccagttgcagtggctcatacctgtaatcccaacacttt
gggaggctgaggcgagtaga UCSC - Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA,Deininger PL. Alu insertion polymorphisms for the study of human genomic diversity. Genetics. 2001 Sep;159(1):279-90. PMID:11560904.
E:Insertion-specific detection:PCR NA NA NA NA NA intergenic
0 chr12 29171519 29171817 1001044 0 + Yg6AH98; RIP_Alu_chr12_029_02 GCACCATCGATGAAATAAAT ATGGTCAGAGAGCAGACATT SINE Alu Yg6 ttttcctaatctagaagcttatattggggattttagatctttcttctttcctaaaatatgcattcaatgccataaatttgcctgtaagcactgcttttgc
tgcatgccacaaactttacccagttgtatttttattcatttagttcgaaataatgttaaatttctcttcaggtttcttctttgagccatgtgttatttag
aagtgtgttgtttaatctccgggtatcttggcattttccagctacctttctattattcatttctagtttaattctactatggtcagagagcagacattgt
atgatttctgtaccttgatatttgttgagtgtattttatggcccagaatgtgttctatcttggtgaatgttccatatgaccttAAGAAGAACATGTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAAA
AGAAGAACATGTATTGtactgttgttggataaagttgtccatagatatcaattatatttatttcatcgatggtgctactgagttcagatatgttcttatt
tattttctgcctgccaaatctgtctatttctgatagaggagtgtcaaaatctcttaactacaataggagagtcctccatttctctttgcagttctatcag
tttttgcctcatgtatttttacactatgttgttaggcacaaacatgttaaggattgtcatgtctttttgtagtagtgacattattattattatctaatat
ccctctctgttcctgattaactttccttgatctgaagtctgctttatctgaagttaataaagctaataccctttcttttgattagtgtttgcatggtat UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 497 181 NA intergenic
0 chr14 44957916 44958217 1001045 0 - Yi6AH110; RIP_Alu_chr14_044_01 AATCCTCTTACTTTTGCAAGATGC TTAGTCTCATCTAGGGATGCCAAT SINE Alu Yi6 catacagaaagacataaaaagcacaccagattggctacagcttgagactagcctcacaaatgctttttttcaattaatcaaaattttacagaggatataa
acaggaatctttattattcattcaacaggtttgcacagagacagagaggccagaagtctaactggtaagcaattcttacctttttgccaacatgtcaggt
tttggagttcctcttccctgagtggccctagcaaccactgagaggcaagctgcatcacaatggaaaatcacagaaccacaagcaaaatcctcttactttt
gcaagatgctacccagggggtggcatggggtaaccaaattaacattttccattctggccagagcaaaatatgtgtgctttaaatAAAAATATTGAAATCT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAATATTGAAATCTttttagaagcttctgcatatcaattggcatccctagatgagactaatttgggagccatctttccttttttactttttttttt
ttaatgcacttcaatgcactgttgttcatttggaatgttccactgtaagttacctttagtaatgttttgccatttccgtaagactttgctccctcccagg
cctaacatataagccagaaggaactcagttttccagaaattaagaattctatttttaactaaaatatcggctttgctttcaggttccgttagtgaactta
gccaatgattttttttctacctaagcatgcaagaaaaatgaaacaaaggggtagaacacaaaaatccctgtgaattttcaaaagccaaattttacagccc
ct UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 479 161 NA intergenic
0 chr15 32529049 32529311 1001046 0 + Yi6AH65; RIP_Alu_chr15_032_02 CAATGCATGTTTAACCTGTG TCTACCATTCACAGCAAGTG SINE Alu Yi6 cagcttttatattgcagtttttgtagttatgttttttattctgttcccaggtatcatagaaatggagttcctagttctagagtatccttttctataaata
gagtaaaatgcagtttatttaataagagatgttggcactttgggcagaaagggagtggtaggcacgtggtacttctctttcatctggacatattccttaa
ttttaccttctttttttcctttctgtgccatgactcctgatcaatcaaatagacaactgaaattattcacagatctgaaatgttttattatttctgttac
cagatttgtagctcttcaatgcatgtttaacctgtgcacatagtctaattttcactgctggtgttgacagaaaaaaatatttcAAAAATGGAAGCTGAGG
GAGGCCGAGGCGGGCGAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGG
GCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGC
CACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATGGAAGCTGAGGattgtaacataatgtaggta
tataatggcaatggcactatttctgcttttcctgtgctttgggtctacctgaagagtagtgtgcacttgctgtgaatggtagagcccacctacattaggc
tgatgatttattgttgaagtcaaaaaaactagtgaaattttactgagtagactcttgatcagcagggtagcagatgtctcccagaatattttgcttctca
aatttacagggcttctacctttcatagaaaaccatcctcacctctgactcatgtgacttatcttcgggtactgccttctcttggcagtctttgggactac
ctcaaagcagaattcatcctaccctgctcagtgttccctcgactcttcttccattatatggta UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 467 187 NA intergenic
0 chr16 81040036 81040348 1001047 0 - Yg6AH55; RIP_Alu_chr16_081_02 ATGGCAAGGAATGATATGAG CCTGGAATGTTCTTTCCTTA SINE Alu Yg6 tctataaactctctattggactgtgagtcccacattagatcagcaacatatgagcagcatggttccacccctacctgttcatttcaatcattcattcctt
ccttcattcatttgtttattcaatagatattcactggtcggctcctatatgcaggcattgttctaagtactagacatacagcaggaaaccaaccaaccaa
acaaacaaaacctgtcctaacagagctcacattctctctggaggagatagatagtacacaaatacttgtcatatgtcagatggcaaggaatgatatgagg
aaaggcagggaagatagacagatttctaggaataagtaaggcatggagcatgcaattattaaaatgtggcactggaagtcctcattAAGAAGAGTTAGGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAA
AAAAAAAAAAAAAAAGAAGAGTTAGGGaggtgtgcaagctatgagattatctaaggaaagaacattccaggcaaaggcagcagtaagcacggctggagca
gggtggacatggggagagaagcaggagttgaggtcagggagttcatggtaagctgaactcatggcctatgcctgtgtctatacaatacctgatacatgga
tgaaagaaagtaaaaacataccattgatggaatgttctcatccctctggttcacgtaaacagatagaaagacaaggcatggtttagcagaagatattacc
aatacgatatacctaacaacttgtattcggaatatattaaaagctctagaaattcaataagaaaagggcaggcagcctaataaagaaatggcaatagact
tgaacaaacactt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 492 165 NA intergenic
0 chr1 79174115 79174418 1001048 0 + Yi6AH97; RIP_Alu_chr1_079_02 TATTGTCAGCCAAAATCCTC CCTCATATGAATATGGATGGA SINE Alu Yi6 tcaatagctgaggcaaaccaccatggctcacgtataactgtgtaacaaacctgcatgctgtgcacgtttcccagagttaagcaaaattaaaaaaaaaaaa
acaaacctactttaaaaaaatctctatttttcttcctcacacaatcacaaattttgtctcatgatgaagaatatgatggattattgaggaagaaatatta
aaggaactgcaaatatagtgactttgctgtataaggagtagtaaaatcagagctcttttgtatattttcattagaatctcaacaatttcagacagtaaca
aaagttggaggtaagacaaggacccagatattgtcagccaaaatcctccccaggtatttataacagaatggaaatctcaagtAAGAATATGGATATTCTG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAGAATATGGATATTCTGtatactgtacatacatcaaatgtttttataggaaaccacatgttacatgtacatatgacataatcaaatgcatgataa
atatttattgcaaattcattgatatattgtctgttagattgttaaagtcctaccatttgaatcatatgcagcttttctctttggaaatatatttatgtag
tctccatccatattcatatgaggatgaatatgtttcatgttatatgaatcaaaaaagaaaactttgagagctgaaacaaaaccatgaaaataaaaaaagt
gaaattactttaatcaatatacatcataaatatattagcttagagacaatttcatccatcattattgtgttttaaattatttataacaagtagagtgaac
attc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 595 273 NA intron:ELTD1:NM:022159:7/15
0 chr20 57156850 57157173 1001049 0 + Yg6AH147; RIP_Alu_chr20_057_02 GCAAAGTCCCTGTTCAGTCC CATGAGACCCAGAGTCAGCA SINE Alu Yg6 tattagatcaataagaaagtatgactacatcatggaccctaattagaagagacgtcccttatactctctgaaatgcttgagaatgttctcctactaacct
agagcctgatggggccattgacgctaattgttaagtgccgttggtcaaggccaatgcatagtcttcgtttagttcctaagtcatttgtggtcggcccatc
caagacagggacacggacaatctcatcagagtaggctgggagggtttccatgatggaatggggctggcctctctgttgaggggggatatccaaggggtgc
acatgagctctgaggaccagtggcaaagtccctgttcagtccttgggaagcatcaccactgctacatttctgatgttctgaagatgggttAGAACAGAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGTGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAACAGAGCgtgagagcaagcagggtgctgactctgggtctcatgtcttgaggctcaattccatcctgtcaccca
gccaggagattcagaggtcctgcagcctcctacctcagacccacatacctggtgtgagttctgccctcctgaccacaacacccctgcaccttggacacag
cttaccacatccttccccagagcatcttgtgccttggagagcaggtgcagttgcagcgttctgggctgcgggcactcgagttcagccctggccagaggct
gtgaggggcagagccaggggatggtgtctccattggtaacgagggtctccatcccttccaggctggccgtgtctgtggccacagatgaataggatgggtg
cccatcttgatgggtcagacaagg UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 448 114 NA intergenic
0 chr2 182064229 182064531 1001050 0 + Yg6AH86; RIP_Alu_chr2_182_01 AACAAGCCTTGGTAGTGAAG ACCCAAGTGTCCTCTGTATG SINE Alu Yg6 catactaataattttgatttatactaaaagaatgaaataaaatgttcagataagaagtaaaagcaatcattaaatacctatgttctgtatattgtgtccc
aaattaagttgcataggcttggaaaacatttattgtatatatttcaaaacatatctttctcatttgaataatgatagctagaactttattatataacaga
tccaagcgtaatccaggaagagtctgaatctatatatgtgatagccagagattgaatatacccaagtgtcctctgtatggaaaaaaatttatctgggcct
ttttaatattttggctgaaaaggctcatctgtatttttcctaaatatttgccttaatctagatcactcttgctaataacaggtactgtAAGAATTACATC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAAGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAGAATTACATCaaccacttcactaccaaggcttgttatttttttcatgtgttatgaagaatcaatatataggaaattctagagatgtaaccacagt
ggtggaagtataaacccagccctgattaaaataaattgctgtcttcccttcaatggctataaaatacttttccccactccttcttctcacatccctcttc
tcctcctcctcctctttctcttccttaccattcctgctcctctgttcctgtatgtatatattctgcacaaatctgactccagttattccaaaccaattgc
cattcttcacatgtgccatgctgcctattgcttccctgcccttgcacaggcatttccctgcctctaaattgcatttccccttttcttcacctgtctatga
cct UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 481 166 NA intron:ITGA4:NM:000885:10/28
0 chr4 101463875 101464133 1001051 0 - Yg6AH28; RIP_Alu_chr4_101_01 TGACCCTAGTTTGGGTCTAA TCATGCCTTCTCCATTTAGT SINE Alu Yg6 ttctagtacaagaaatgtagttccaggcaaagcatatttccttaggttaaacatataaaaatctgaatttttagtaaaaaaaaaacaataataaattgaa
gggtaatatattttgtcagtattttttactataaaatttatttaccttacaagctgtatgttaccactgtcatctgcttgatttgcaagcatccagctta
ggtgtcatttttccagaatagagcgttagtatgaaagtgccctgtgctcatgccttctccatttagtaggcaagaaaactaccatttccaccttaaatct
caggattattttaaattaaaggtaattaaaaaatgcaaagtgtcttgaattcctcaatagaaatgtgctacatgactgtgaggttcataatttttAAGAA
GGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATG
GTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTG
CACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAtttaggcccctttttagcagcctaatatctgtcatg
agaagagaaaaggattgatttagacccaaactagggtcattatgggcagcagtatgatcatttgactggaggtttcagaaattcttgtttgaagggtaag
aatgcagaactgccactgctaattagataccaatataacaatagaaaacaacagctgtgggccaggcacagtagctcatatttgtaatcccaacactttg
ggaagcaaaggtggcaagatggcttgaggcctggagttccagataagcctgggcaatatagtgagaccttgcctctagaaaaaatttaaaaattagctga
atgttgtgacacgcacttgtagttccaaatactcgagagaatgaggtggaagatttgct UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 492 218 NA intergenic
0 chr5 20054668 20054963 1001052 0 - Yg6AH35; RIP_Alu_chr5_020_01 AATACCAAGGCACAGTTCAC CAGGATTTTGTTTCCTATGG SINE Alu Yg6 ccagcaagaggcaaattggcccccatgatccaatcacctcccacaaggcccttcctccaacattggggggttacaatttgacatgagagttgagtgggga
cacaaatccaaaccatatcaatatgctattttataatgactctgtgttaccatatatcatccgtaaaaagtatgcagatctcattaatttagtagtcatt
cttctatgtcaactgtaagcaaacatttcttaacattagtgagtctattttgtgctttaaaagatagtatcattcttattttattgtctcactataagta
ctacaattctcactccttttgtagtgatttcatggtgcttaattccatgaaaataccaaggcacagttcacattctcaggttcattAAGAATGCCTTATT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAGA
ATGCCTTATTctcagagaactctcttaagggttttgtatttaaagtaccacaactgtttttaccagatctgaatgttccagttattcatttttattccat
aggaaacaaaatcctgattcttctcactttcaatattaattgaatctataaccttaaagaattatttgggaagccaattctataaaagtcatgcagtcat
agatatctcatattttttatcattttcttaagaatcttcacacccaaatatcaaagattgtttagaatacaaaatggcatactttatgtacatgaacttt
gtgtcaggctcattcaaaagcaaagctcaatgagggaaggttctctaagtggtaatgcttcacatgtttactccacactagacaaaagaatcttgt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 465 155 NA intergenic
0 chr5 99787376 99787677 1001053 0 + Yg6AH30; pAlu5-99790231; RIP_Alu_chr5_099_03 TCCCTTTCTAACCTTGTGAA TACTAGGGCCCATTTTATGA SINE Alu Yg6 ttacttcttctcacctagaaaccatcaagctttaaatggtgtggcaaaaggagctgaaaattaaactgaccttctactgcatacccttaaattgacccag
gaggagccctagctgctattcccatgccacgcccctctccagcaggaagtagccagagtaagtcgacgcccaattccccgtaacagcagttaggaatttc
attcctgaggggggtgtttgttataggagataaaaataaattatttgggtagacagagtaaagagagtccccggcagaatactttccttctaacaaaaag
cagctcagaaatggctccctttctaaccttgtgaagttcaaagaaatcatttctcttctaacaaagaacaacctgaaaggctgtAAAAACACAGATAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAACACAGATAAACaacttgggcacagaaagaggtgggggagtctcctcggtaatcaccaaacttcacattcataaaatgggccctagtaaaaaca
atgggccttaataaccacattcctttccctttaagcacactaagataaggaagctaaaagcaggggggcaggggaggatccctgcagctgtgcaagaaga
tgagaagatgtctggaacagacacagaaactctccctcccagataagcaaaatagagcagcagaaactaagagtctacctatgtaatcaaggaattgggt
gagagctgatagaaaactctgtgctatgcacatagcacacctgattccaactaaatcttcaggccttaggaagataagacacccctcctcactagcccat
tt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Reference NA 55 479 161 NA intergenic
0 chr5 177061523 177061814 1001054 0 - Yi6AH63; RIP_Alu_chr5_177_01 AGTAGTGATGTGGACAGTGAAGG ACCAGATAGCCTAAATCATCACTC SINE Alu Yi6 catggtgaaggtctctgaaatgtcttctatgcttttcccccattgtcttggctattagcacttggcacctttttacgtatgcaaatttctgcagcctgct
tgaattcatcccctgaaaatggccttttctttccaggctgcaaaatttccaaacttttacactctgcttcccctttaaatataagttccaactttaggtc
atttctttgctcatgcatatgagtgtaggttgttagaagcaactgggtcacatcttgaatgctgtgctgcttagaaatttcttccaccagatagcctaaa
tcatcactctcaagttcaaagttccacagatccctatggcaggggcacaacgcagctatgcacccaggttctttgctaaggtataacAAAAGTGACCTTT
GGCCAGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTGTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAGTGA
CCTTTgctccagttcccatcaagttcctcatttgcatttgagacctcatcagcctggccttcactgtccacatcactactggcattttgatctaaccatt
caaccagtctctaagaagttccaagctttccctcatcttcctgtcgttttctgagccctccacattcttgcaacctctgcctgttacccagttccaaagc
tgcttccacattttcagctatctttacagtaatgccccactccttggtaccaattttctgtattagtctgttcttgtattgctataaagaaatacctcag
agtaggtaattttatttattttttaaaatttatctatttatttttgagacagtctcactctgtcacccaggctggagtgcagtggcatgatc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 494 190 NA intergenic
0 chr6 163734221 163734222 1001055 0 + Yg6AH99;1104685087387; RIP_Alu_chr6_163_01 CGGATAGGTTCTTGTTTGAG;NA GCAACATTTAGCATTTTCAC;NA SINE Alu Yg6 cagtgtctccatggaaacagctgggggctggtctgccagttcctatcatgtttgagaaccatgtgtaatcactttggaataggcagtatttttaaacttt
gcagtgagttgggtgaaagcttcagggatcaaatatttgaaaatgtctgaggagtaaaaatcatgccatgagataaagctttgtgagaaagagacaacgc
aaaacggtcacttttaatatttcaattctgagttaagacttcatatagatattttcatttattccttgccattttaatacagattcggataggttcttgt
ttgagaaaagaggttctgcaaagcttttctacttacatgaaactccatggtaatgacgctgtactggaaaaaagagaggttagatAAAAGATGAGGTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGATGAGGTCTCcaagttttagagtgaaaatgctaaatgttgcttagattttgtgtgtatttagttgtatttaaaaaggtaaatgaga
aatcatttgtatactggtttctgaaagatatatttgagtttattaaaactttcagattttttgtactttactcaatgcatgactatttcactgaaattct
cacgtttttgttttggtgtcaggagaggcactgttttgacagtatttgcacatgggatttacctccatccttggatatatttctgtgacaccagagcagt
ttccatgaaggccctggaagggaaattttcaatcaacaaacagcaaaggatcccactgaccatgggcacactttttttcttaacaaatattattgctgat
gtcttatca Other;Venter - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 60;NA 470;NA 146;NA NA;NA intergenic
0 chr6 39030177 39030480 1001056 0 + Yg6AH160; RIP_Alu_chr6_039_01 TCAGAGGAAGGATGGGCTTA TTCTCCCCTTGATTATTGGTTT SINE Alu Yg6 ataacatacggatgggacagaatcaataagtttttgtagaaaaagaggagaagggaaactttggttatagatattgtcttgtactggtcaagatctgtag
tgagaaatttggagcagataaactctgcacagagtactgggtacatgggcaaagtggagaaagcagatgggtttagcacgagagcctttctaggagcctg
actactggaggagggaggtctcagaggaaggatgggcttaaaaagaacacctaaaaacaaacgaaagagaacaaatacataaaaccccacaaccacacaa
aagtagtagtgggaaaactgatataacaatatgtacagatgaaacattttaacattttaaataataagagaatggctcataattatagtAATAAATTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAATAAATTACAgcatctcattaaaattggcaaatttatagaaacatatgaatttagaaaatttcctcagaaaaggtagaaaaccctgaataaacca
ataatcaaggggagaaaaagtagaagttttaaaattattacatcagcaaaggctctaggcttggataattttctgataagtcctttaaaactttcaagga
ctctcatatgctatattctgttccaaaagatggaaaaagagaatacattttcctttttcttttgagacaggctcccactctgtcacccaggctggagtgc
agtggtgcaatcatggctcactaaagccttgacctcccaggctcaagtgatcctcctacctcagccttccaagtagctgggactacaggcacacaccact
aatc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 596 281 NA intron:DNAH8:NM:001371:80/91
0 chr6 29080201 29080294 1001057 0 - Yi6AH86; RIP_Alu_chr6_029_03 CCATTACTGCGGTAGTCTTC CAGCTCTTATTTTGGGTGAG SINE Alu Yi6 cttgggaagatgacctataagaaaacacttgaaggaggcaagattattagccatggagatcgcttaaggtgaagggagcagccaatggaaaggccctaag
atgaaagagaaggaaggtcggtatggctgaagattgagggagtgggagaagagtagaaggtgttgagaatgacacatcctgtagacttgtatgccactct
taagacttcagctcttattttgggtgagcaggagaggaagttagaagtcacgggcacattcagtagggccttgtatacctcggtaaggacttcaggtttt
attttaagtatgaaccactggagagttttcagcagagcgatgaaatgatccaactcaagttgtaaacggactactcagactgccctattAAGAAAGGAGG
TGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA
GGAGGaaggcaaggattgaagaaaggagaccagttagaagactaccgcagtaatggaaaggaggggagatagcaggtgatggtggctcagacaagggtgg
tagccgttgagattgtattctggatatgttcacattttcagtttgacttcgtgcctcaggttctcagtgactccctattttttcctgtggtcacattcct
cttttcccttcaccaaatatgcagggaaacaagatgtgagatcacagcggtttagtgttgctaatgaaccccaaatccagggcagtgtttgacacattaa
gccaaacagtagcggcactgtgggtcaagaagggccctttggctggcaccaccaaaacatgtgttctccaaaggaggctggcatcaactggagc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 358 243 NA intron:ZNF311:NM:001010877:1/7
0 chr6 167802076 167802385 1001058 0 - Yg6AH133; RIP_Alu_chr6_167_01 GAAAGAATCGTATGCTGAGG CAGACCCACTTGCTGTCTAT SINE Alu Yg6 tgtctcactgctgagtcaacctcaatggcttccagctctcagtctgaaatgacagcccaagctggggcccgcactccggcactgcagccagaagaaggga
ggtaagccctgggagccactcttgaggacacccctgcacagtggtacccctgtatccctggggcgtgtgttccaagacccgctgtggactcctgacacag
ccatactcccagacccacttgctgtctatcaggacacgcttccgtgcatgtcttccacccacaaactcaatgccttttttaacttaactaagcactcacc
atgcactgctgctgtagcttttgtcttttgagatgcaacagcaaaaccaacacaaatttcttttccttctttatagtttcactgatAGAAGAGTCATTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAGAGTCATTCCtactgtagatctcagcagcctcagcatacgattctttcctttgcttattgagaactgacaccttttcactttatggc
ttcttcttggcagaaccaaatggccagtctcttgcggccattactgagtgaaccaggagtgacttgaacaatgggagacttgaactgggagactctgaca
gttgatctgataaccaaggtgactacaaagtgactcacgggcagggaacgtgcacagtgtggatccgctggacaaagggaggactcatctctggggaagg
agatgagggacagtgagagtcctcatcacactactcagaacagtgtgcaatttaaaacttgtggattgctgatttctggaattttccatttaatattttg
tggcctcag UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 553 229 NA intergenic
0 chr9 6742051 6742356 1001059 0 + Yg6AH138; RIP_Alu_chr9_006_01 TTGTTTGTGATACCAAAGGAGCTA CTGGTTTTGAGAACGTTACCAATTT SINE Alu Yg6 caactttagctgaatgatgagatctcaattatgcataatcagaacacttaaggaagatggaacaggatagttgttcacaatagtcagctcaaggccccta
gaaaatgtattataaagctgcaggctgaaaattgagctcattgatcagacagaataccttctggaagaatttgagtagaaaagaaaaatcagagcaatta
ggtagggagaaagggaaatattaaaatcagtgaatttgataaatttgaggtaaactacagaatgtgaaaatatcttacaaggcaacattttgttctgcag
aagaaagcccatgacaattaggttcttgtttgtgataccaaaggagctactgctggagagattaagcaagtcacattcctgagttAAAAATTAAGGAGGA
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTAAGGAGGAacaggtaaaacaaaaaattggtaacgttctcaaaaccagggattttttttttttttccggtggagtttcgctcttgttg
cccaagctggaatgcaatggcatgatctcggcttactgcaatctccgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggttta
caggcatgcaccaccatgcctggctaattttgtatttttagtagagacggagtttcaccatgttggttaggctgatctcaaactcctgacctcaggagat
ccgtccacctcgccttccctggaattacagacgtaagccaccgcgctcagcctaaaaccagggattgttaaagcaacttccaaaaagttatattgtggtc
tctttc UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 435 114 NA intron:KDM4C:NM:001146696:1/18
0 chrX 96081330 96081618 1001060 0 - Yg6AH118; RIP_Alu_chrX_096_01 CACACACACACACAGGGTATAAGA AGTACCCCATTTTTACAAGTGCAT SINE Alu Yg6 cccagttaactagattctaaaacttttaactttaatggttattttcatactcatttattttgaaggatgacactactagacataaaactgaaatattagc
acttttattttcttagatgttaagatcacatttattagtagataaatactgtaaaaagagaaataacagtaaaaccttacttaatatgcacaagataaaa
cctttaaagttctatcccagaatcttcagtgctttttctgtgatatcactatctagcaaagaaaattcattgcagggccagtgcaatctgttgggttcat
tgctaccaaagtcctgtcgctggagtaccccatttttacaagtgcatctgtctcttctggccaaatttaaaaaatgaacaccttttAAAAAATGTTACCT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAATGTTA
CCTaaagagtcaaactcttataccctgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtatatacacacacacacatatacacacacacacacatat
atatatatacatatatacatacatatatatatacatatatatatatacatacatatatatatacatatatatatacatacacacacatatgcatatattg
cttaggccccactacattgttcattttcctttaatatccgattcaaattataaatatagtactctcagaactgcctcttacctgatataataatcatttc
tgataagcaaaaaatgttgtagaatagataagaagtaattttcagcagcagtgtccttcagcatattatatagaagatggtagacttca UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 60 416 113 NA intron:DIAPH2:NM:007309:12/27
0 chrX 31487400 31487701 1001061 0 + Yg6AH38; RIP_Alu_chrX_031_01 TCAAACAGTGTGAGGGTTCG TTTCCACCTCCCTACTTCTCAA SINE Alu Yg6 ttacaggagagacaaaattaccacatcattcccattatcagaagaaataattcaaattaagaaaaattagaaataaaaatgaagagatgacactgaagaa
tatctcaccactggaagatgactttcatctacagtgatctctctataaagcaaagatacttttcagctattattcagtaagtgagtccaacagtttcctc
tgatattgtgaatttaattagtaggcaatttgctcatgaaatcagaatctagcccttcccttgctgggttgctggatctgtgtattcctatattcttctc
tagctattgcctcatttctcaaattcctttcatgtcttcatctccattccttatttccacctccctacttctcaactcaccaccatAAGACTTCTTGGCT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAGACTTCTTGGCTctggttccagtgtaaattctttgattgcatcatcatgaacctcttacttgaggttagggctcagcgccccgaaccctcacactg
tttgagggtcaactgtataacactttccctaattcccaactcaccacaataagacttcttggctctggttccactgtaaattctttgaggcatcatcatg
aacctcttacttgctgaaaactccaagaaatagtgttcacacctagctttttcagctgcctggtagtccctgacactgccagccacttccttgtctttga
gactttctccttgctcaggttcctagtcattcttctcctttgtagcctgccattttctggccacctgcttagctcctacaggaaacacttcataagtgtt
gt UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 452 136 NA intron:DMD:NM:004010:55/79
0 chrX 65443788 65444080 1001062 0 - Yi6AH124; RIP_Alu_chrX_065_01 TGTCATTTGTTTGTGTCCTCTCTTA ATAATAAACAGAGAGCCAAATCGTG SINE Alu Yi6 cctttgaagaccagcgcaagacaaggatgccctctctcaccaatcctattcaacatagtattggaagttctggccagagcaatcaggtgagagaaagaaa
tacagggtattcaaataggaagagagggagtcaaattgtctctgtttgcagatgacatgattatatatttagaaaacccggtcatctcagcccaaaatcc
cctcaagctgataaggaacttcagcgaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatggaccaataataaacagagagccaaa
tcgtgagtcaacttgcattcacagttgctgcaaggagaataaaatacctaggaatacaacttacaagggatgtgaaggacctctttAAGAACTACAAACC
TGGGCCGGGCACAGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAAGTCAGGAGATCAAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTGCCAGCTACTCCAGCTGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTTCGTCTCAAAAAAAAGAACT
ACAAACCactgctcaagcaaataagagaggacacaaacaaatgacaaaacatttcatgctcatggataggaagaatcagtgtcgtgaaaactgccatact
ccccatactccccaaactaatttatagattcaatgttatccccatcaagctacaattgactttcttcacagaattagaaaaaaaactactttaaatttca
tatggaaccaaaaaagagtacatatagcctagacaatcctgagcaaaaagaacaaagctggaggcatgaccctacctgaattcaaactatactacaaggc
tatggtaaccaaaacagcattattctggtaccaaaacagatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatcca UCSC - Salem AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA. Recently integrated Alu elements and human genomic diversity. Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30. PMID:12777511.
E:Insertion-specific detection:PCR;C:Reference NA 55 466 159 NA intergenic
0 chr1 87610141 87610418 1001063 0 - Ye5AH20; RIP_Alu_chr1_087_01 GAAATGATTCCAGGTTGAGA CCGGATGGAAGATAATGTAA SINE Alu Ye5 caaggttattccattttctccagccaatgacaggaacggatgaagttaaagattgggggtgggagggaattaacaaggtagtaggagaaaccaccatagg
atcctgcccaggtaggatgggaaataaagcccagaaagggcaggaggactgggagagtagacagggtcaaaggaatgactgtgactctgaggcttggtgg
gagcagcctttgcaggagagaaggaaaggacaaggtggagagtaagagatggtgactagggacgggaatgctgctgctggagttttcaaagcagaagcag
ctctgggtgtagcagaacagacaggagaccaggaagagagggactggctgagagccggatggaagataatgtaatcagaggtcatgaaagTGGTGAACAG
CCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTAAAACCCCGTCTCTACTAAAAATACAAAA
AATTAGCCGGGCGAGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGC
CGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAAAGAAAATGGTGAACAGaaaccccaaaac
acagacataaactgctttctgggcccaagacccacgttaatgaaaattaacagccttaaaatttatcaatgggtcctgttgcttgcaggatggaattcta
actcctcatcacataagacctttatgatctttcagtgtcacctcatctcccagcacaccgccacccaggcccttcactcttctactgaaccactttcttc
catgtgcacacgctgatttctcaacctggaatcatttccctacacctttcctcaaaggactgttaatgagttttcagaggtaagccctattcctctcctc
tggagaaccttccctgagtgcccagtctgagttgaatgtcccccttcccactacccaatatctccccctgaactccag UCSC - Salem AH, Ray DA, Hedges DJ, Jurka J, Batzer MA. Analysis of the human Alu Ye lineage. BMC Evol Biol. 2005 Feb 22;5(1):18. PMID:15725352.
E:Insertion-specific detection:PCR;C:Reference NA NA NA NA NA intergenic
0 chr11 61946506 61946507 1001064 0 + Ya5NBC135; RIP_Alu_chr11_061_02 AATTAAGCTCATGGTAACCAGCAC GACTCTCCTCTCTGGATTAGAAACAG SINE Alu Ya5 agactcgggcaatccacaaatcttacactctagtccatcgatgaaaaggctgctatctctcgctgatgggcctggctgtttgcatctgggcagacccagc
cagccagagggctagccagcttggaaaggggcctggagacatgtgccttctctcctctgagttgcagcttctgcagagatctgcccgagctttcagcgtg
tcatcgaaaccctcctcatggacacaccctccagttatgaggctgccatggaacttttcagccctgatcaagacatgagggaggcaggggctcagctgaa
gaagctggtggacaccctcccccaaaagcccagagaaagcatcattaagctcatggtaaccagcacctttcacgtcacactggttAGAAGTGGCTTCCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAACAGAAGTGGCTTCCCCaagtggggctgcaggattgccccagttttcagacctgtttctaatccagagaggagagtcacagtgccactgtccccaggc
aggcagcacagtgatctttctagacatctccttcttttttttttttttttttttgagacagagtctcgctctgtcgcccagactagggtgcaatagcacg
atcttggcttactgcaacctccacctcccaggttcaagcgatctccggcctcagcctcttgagtagctgggattacaggcacccaccatcatgccgagct
aatttctgtatttttgtagagatggggtttcaccgtgtttgccaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccaaagtg
ctgg Other - Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
- Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Carroll ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J,Ahmad Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,Deininger PL, Batzer MA. Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contributionto human genomic diversity. J Mol Biol. 2001 Aug 3;311(1):17-40. PMID:11469855.
E:Insertion-specific detection:PCR;C:Reference NA 60 436 117 NA intron:SCGB1A1:NM:003357:2/3
0 chr3 100209393 100209394 1001065 0 + Yd3JXd19; RIP_Alu_chr3_100_01 ATCAGGTGCTCCAAATGTCTAGT GCATGCCTCAGACACTTGTAAAT SINE Alu Yd3 tgggggcaatatgggttggcaggcacaaacactagtgctgggggagaatcccatgggtgaccaccaggttcccagaggtgtgcctaggcatggagctggg
aaacctcctccctggccccaagttatctgcatggggaggggagtcagcctaaactcctaatgtaagagagtggagctccagatgcctggagatttgcctg
agcatggagcaaagaggaccccacttcacaacagtctttgtataggaaggactggctgggtcaggctgcttattcaggtgatcaggtgctccaaatgtct
agtgatctgcctgggtgtagacaggagagaacccaccctacaccaggatctttttattagccagatgctgtcacaggggctgtttacccatgttctcatg
nnnnnNNNNNNNNNNnnnnncccaggattttggatgtccttcacaattctggtggattccaattttccttcttgaattaaaactcacagagatgatcttt
atgtactgtcttgctatttacaagtgtctgaggcatgctaaaagcttctaatctgtcatctttgaaaaaaactttatttacaaaacttggtgccaacctg
caggctgcagtttgtcaactcctgatatatgctataatgttctggcagtaatccaccttggaaacctctaggagaatgagaaggaagatttttctattag
tatccctctcttctctgttcccctactcacccttcaaaaggcacttgactttttcttgccatcctctagcataatattcagtaagtctagtgtttgaaaa
tgagatacaggagggaagtt Other - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
E:Insertion-specific detection:PCR;C:Reference precise insertion position unknown TSD unavailable 60 550 238 NA intergenic
0 chr4 133839341 133839632 1001066 0 - Yd6JXH34; RIP_Alu_chr4_133_02 GCCACCAAAATAAGCATTGTAAC AATTGCACTTCCCAATTTCACT SINE Alu Yd6 ctaatgttctttttttaagttttgtagttttattccttacaattatgtctttgatcaattctgagttactttgtgtgtgtgtgagtgtgtgtatgatgtt
ggatagggtctaaatgcaactgttttacatatgaaaatccagttatcccagcactatatgttggaagacaattacttccccatttaattgttttggcatt
ttttggcagtgctgaaagcaaagcttaaggagcaggacaagtcatttaggtgcctttgagaagaatactgaaaacgagaagctgcatgaagagggccacc
aaaataagcattgtaactttatatatccatagatgtatgtttttatttctgtactttcaattctatttaattgatctatgtctatcAAAATGCAAGTATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATGCA
AGTATCacactattttgattattgtatcttaccagtgaaattgggaagtgcaattccttctactttgttatttttcaagattgttttggttatttggagt
ctctattttcacgtgaattttagaatcagcttgttaattttacaaaaataggcaattgaaattttgatggagattacattgaatttgtagattaatttgg
agagtattacaatctaaagaacattttgtactcctattcataaacatggaatgtctttccatttacttagggtttctttaattttgttcaacaacgtttt
gcaatttttaatgtacaactctttcacctctttgattaaatttacttgtaagtattttattattttaatattattgtgaatagaataatttt UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
E:Insertion-specific detection:PCR;C:Reference NA 60 461 155 NA intergenic
0 chr4 109327140 109327424 1001067 0 - Yd6JXH44; RIP_Alu_chr4_109_01 CTATGACGTGTCCTGCCTTTT AAAGTATGTCCACGTGGTTGG SINE Alu Yd6 aaataacaagaaccttggatttcacaatcctccccgcatcttgactctagcgtgtctttgtactgacttcaagtctagacaaagcttaactttttcaacc
aattgtcaatccgaaaatctttgaatccgcctgtgacctataagtaaccccctcatactatgacgtgtcctgccttttggggccaaaccaatgtatacct
tgcatgtattgatctatgtctttgttgatatcttctgtctccctaaaatgtataaaacctaactgcagccagacatgcagctcacacctgtaattccaaa
actttgggaggccaaggcaaacggatcacttgagcccaggagtttgaggccaggctgggcaacatggcgagacctcgtctctacAAAAAATACAAACATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATACAAACAT
Tagccaggcatggtggtgtgtgcctgtagtcccagctactcaggaaattgaggtgggcagatcacttgagcccacaaggtggaggatttagtaagccatg
atcgtgccactgcactccaaaaaattgtaacccaaccacgtggacatactttctcaggacctcttaatactgttccccaggcctgggtcactcatattgg
ctaagaataaacctctttaaatattttacagaatttggcttgtcatcaatagttttaagatcactctgtgagctttgcagacaatagcaggtacagcatg
gtagaaacagggagacctgttaggaggctatgataaatatctagatgaaaaatgattgcagcttgaactaggctggtgagaagta UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
E:Insertion-specific detection:PCR;C:Reference NA 60 695 394 NA intergenic
0 chr5 77098082 77098375 1001068 0 - Yd6JX35; pAlu5-77100929; RIP_Alu_chr5_077_02 GGAACACATCAAGAGACTGGAAA TGTTGCTTTTAAACAAATCCTTGA SINE Alu Yd6 tgtcatgattttaataaatcatttgttgcctgaaatacatttgtactctatgaaatttttgaagacctccaagtctactgaagtgtatttgaacttacat
tactagtatagtattataattttgatttccaaatctagaatgttaagttctgaagacgctgcactatatcaaagtatacaaagattttcttaaggccaaa
cagttcttcacgtcttttcaggaccaaagggatggtgtctgatatatcattgcttttcacagaattgtttttcaacaaatagacacttaatagatatttg
tcaattgagctaaggactggaggaaaccagaaaagggtttatgagggggaacacatcaagagactggaaataaaagtttgctttATAAATAAAAGTGAGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC
GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAATAAATAAATAAATAAAT
AAAAGTGAGAgacttagaaatggagaaaaaagagaaacaaccgctgttaagtaataaccaccctcaaatagacatttttcaggatagtatttttatttta
ttagagatataaaagatatgaaaatatatcaaggatttgtttaaaagcaacaattttacattttttaaactaggaagagactagtctattgtggaaaatt
taaaaattattacagttctgtcaaaaagtttttgtagtttacctagaattaactagaatagattcttaaattctagtttaatagaggggtctgtgtttgt
gtgtttaactgcctgctaagttacatagactaatccactccaggttattattattattattattttgcaacttaagaaaaatagtagggacata UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Reference NA 60 505 195 NA intron:TBCA:NM:004607:1/4
0 chr11 87558210 87558509 1001069 0 - Yd6JX455; RIP_Alu_chr11_087_01 AACACATCTTGGTTTAAGTCACCA AAGTTGAGCAAGTCTTCCAGAAA SINE Alu Yd6 aattacctctgactagctccctacaacaacatgtgggaatttaagatgagatttgtgtggggacacagctaaatcacatcagggccctgggggtatacat
tttccaatagtttttctaggaagctgctgtgacattattatcaaaaattgataaagaaagtttaattgattaagctgtatatttatgttttgggaaccta
gcactttttaaaaagtagataaatagatctaagtatctcttcaaaatcaagttgctaattaaaagttttcaatgaaagactttgtaaaccaagttgagca
agtcttccagaaagtagaatacagagacaaaaagaatgaaacattgtttaaaaagtcttaatggtgtcctcgcgttagactttAAAATTTTGAGAGATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAG
GCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAATTTTGAGAGATTGagaacaaataaaaagagagagaaaattatcaaagaaataatgcaagaatgcttctgataaatgaaaagcatctgtgtccagat
gaaagagaccgcttggtgacttaaaccaagatgtgttaactgtaaaatttcaaaatttcaagaataaataaaaaataaatagtaaatccttaaagatttt
caagataattacatattaatttcattgattttaaaaccaatccatatatatcctagataatttagaaaagtataaagaagaaaaatgtttgttctagtta
tatgtataatcatgtacatatatttataaaatctggataattgatatatgtatgacatatatatgtaattttatatttagcttttttccaaataatacaa
UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
E:Insertion-specific detection:PCR;C:Reference NA 60 547 230 NA intergenic
0 chr12 31665010 31665296 1001070 0 - Yd6JXH14; RIP_Alu_chr12_031_01 CCTTTATGCACTTTTACCTTCC GACCCCTTATCTTTGGAATGC SINE Alu Yd6 agtctggaaggaaatcagtggaaatggagataattgcattgaggtggtaagattatgtaagccttagattttcttctttattgttatagcatcacaaaaa
ataaaaatgagaagaaaagaagagaattacaattttaatggtcagtgctcaatacttggtaggtacatgtactaagtgcagggaaggcaaaggggacact
cattacactctaattcactcagattcagagaaacttccaggccagaggagccacagatatttataattaataacctgttttgaccccttatctttggaat
gctgattaacatgaagcaataattactattaatatattagtctttcaatattgctgagactattcataagactgaaaaccctttAAAAAGCTCCCACGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCCCAAAAAAAAAAAAAAAAAAAAAAAGCTCCCAC
GACacataaacataaggtgatattttaatctttatcataatgaatttatccaatccagggtttctaaaattgtcagtggtaatttggcctgggaatttat
cctagaatactctgacgagaactagattaattctggtctcccacttcacagtgttctgtttgccttgggactcattgtaggtaaaaaggatgtggagtct
ggaatagtctatgcttatgaaaccgcaagcaaaattcctagagtggccctgaattcaacccatcttcctgggactatgacactcatggctatgggtgaaa
ccaacctttgaacagtcattgcattccagtactcccataacttgctagtcattgcatttttttcaaggcctcttttgaagagttatt UCSC - Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. J Mol Evol. 2003;57 Suppl 1:S76-89. PMID:15008405.
E:Insertion-specific detection:PCR;C:Reference NA 60 830 527 NA intergenic
0 chr10 9559835 9560127 1001071 0 - pAlu10-9669962; RIP_Alu_chr10_009_01 NA NA SINE Alu Ya5 cctttttggagttttcctcagtaaccctttgtgagtggtcatctctttcctgccagggtcctcagggaggcagcatgccagttggcttgattcatcaaat
tccaaaccccttggggttgggtgaatgatggtcccctaaagatgtccaaatcctaatccctgaacatgtgaatattgtaacttatactttgcaaatgtga
ctaaggttcttgaaatgggaagataatcttatattatctgagtgggcctgctgtaatcacaagggtcttcataagagtgtggcaggaaggtcaacgtcaa
agagagagagatgtaaggacttaagcagaggtaggagaaaagagaagatgctgctgctcgctttaaagatggaggacgaggactcctAAGAAATGCAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAT
GCAGTCagcctctagaagcttgagaatcaaggacccccggaagtaatgcagacctaccaacatccgggttttagacttatgaccttcagatatgtgagaa
aatacattatttttgttttaaaccactaaatttgcagtaatgtgttacaggaacagtaggaaactaataagtgtgcttttaaagacttcccttttcaaga
caattattctttttatcacatctctattctgctaaaaataatctgttttaatataattttttgtacctctcatttgaagtctatcctaaaaatgtagctt
ttaaacttgcattaaaacattcagtcatatttagagaaagatagagatggaaatgatagttacatcaaagaagttaatgccacagaaattcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 46322200 46322201 1001072 0 + pAlu10-49034251; RIP_Alu_chr10_046_02 NA NA SINE Alu Yb7 aaaaaaatgtttttttttctttaatttgtttcattaattgatttagtatgagcttatgttgcagagctgaaatctagttttggagtgttaacaaaattaa
gtttcccagactgtaaaagagggctggatcctggaccatggtcattttaccgaggcaattaatgtcagcagggacctctcaggggccttttcctttttcc
taggtaggtgtaaactcaactctgcaatctctgtattttttcctaacatctctatagttgttaacgactaggtaacattctctctggtggctgtaatgca
atttacttaaccattttcctattataagacatttagatgatttctatgaacatttttttaaaaaatcagattttttttgtctttttAAGAAAAAGAGGAT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAAGAGGATctagttcaccgatttctgaataagtttcttttgtgtggaacagatggaaatgttgggaaaaaaaagaaatctac
acttttctgttgtcctaatgaggcagtgaacttagttggatagcttgggtagtttatactacctattgatatatacccccaaacagaaatcttccttttt
ttttttttttttttgagatggagtcttgctctgttgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagtg
attctcctgcctcagcctcccaagtagctgggactacaggagcccgccaccacgcctgactaatttttgtatttttagtagaggcagggtttcaccatat
tggccgggctgg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FAM35B:NR:027632:1/7
0 chr10 54530827 54531136 1001073 0 - pAlu10-54753125; RIP_Alu_chr10_054_03 NA NA SINE Alu Ya5 aagcaatttctatattaaagttatgtaacagaaacatctgacttttacttggccttaatatattgtacattttcaataaaaatgattatttccaacttac
agttatgaatcactacctttaagcaattatcatatcttatgtaccctgggagccacacagtagcataagatgcaagggcatgagatatagctgatagaca
agttacataaacactcagaggcaaatagtcattcaagacaaaatttagactatagacagtaaatgttaaagaaatgaaaagtagatcaacccttcccttt
gatatgatatgattagaaaagtcttctaagaactggtgagattggacttggcccttaaagaagaagacagtgtctgataagcagaaatattGAAAATCGG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAAATCGGGgtgcctccagattgataacacatagcttgatgatggatgttgtttagatcagggtagatgatactataatagaaaagatg
aaaatttcaataataacacaataatgctttatttgtcactcatagtgagtctgatgcagttcatgctgtctactttcttatagatacgttatctgaagta
tatgactcacaggtatttgggcagaagtgatcacaggacctgacaactgcaaacaaggctgggataaatcagaggtgcacttagaaagctgatggtcaat
cctggctaacatggtgaaacgccgtctctaccaaaagtacaaaaaattagccgggtgaggtggtgggcgcctgtagtcccagctactcaagaggctgagg
caggagaatgg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 58685233 58685565 1001074 0 - pAlu10-58907542; RIP_Alu_chr10_058_01 NA NA SINE Alu Yb7 gtacaaccactatgtggagatcccttaaagaactaaaagtagatctagcatttgatccagcaatcacactactgggtatctacccagaggaaaaaagtca
ttacaggaaaaaagttagtggcacactcatatttatagcaactcaattcacaaaaatatggaaccagctcaaatgcccatcaatcaatgagtggataaag
aaaatgtggcatatatatatatatatttacatgccatggaatatacttagccatataaagaaatggaataatggcattcacagcaaactgaatggaattg
gagaccattattctaagtgggaataatgggaaaccaaacatcgtatttctcacttgtaagtgggagctaagttatgaggacacaaaggtatAAGAATGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGATacaatggactttgaggacttgggggaaagggtgagggggattgtgggatgaaagactg
cacattgggtatagtgtacagtgcttgggagatgggtgcaccaaaatctcggaaatcaccactaaagaacttattcatgtaaccatataccgcctgttcc
ccaaaaacctattgaaattaaaaaaaggatacatgcgactaccatataaccccccaaaacatcagtttcacatgaaataagtacaaacaggaattcagta
atacaccaatcatcaaaacaaaacaaaacgaaacaaaaaacaaagggaattaatgttggagtctttaaaatcgcatttttacacattttttaatttcata
ttttcaaaagaagacctatatgaccataaactg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 66521926 66522231 1001075 0 + pAlu10-66744220; RIP_Alu_chr10_066_01 NA NA SINE Alu Ya5 atattctagaaaatttctcacttatagtctaataaaatagaagctatttacttttgtatctaagcatgcagagataatcataagcattaaaaagtcagga
aacaacaggtgctggagaggatgtggagaaataagaacacttttacactgttggtgggactgtaaactagttcaaacattgtggaagtcagtgtggagat
tcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccgaaggattataaatcatactgctataaagacacatg
cacatgtatgtttattgtggcactgttcacaatagcaaagacttggaaccaacccaagtgtccaacaatgatagactggattAAGAAAATGTGGCACATA
GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGGGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAATGTGGCACATAtacaccatggaatactatgcagccataaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaac
catcattctcagcaaactatcttaaggacaaaaaaccaaacaccacatgttctcactaataggtgggaattgaacaataagaacacatggacacaggaag
gggaacgtcacacaccagggcctgttgtggggtgggggtaggagggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcag
cacactaacatggcacatatatacatatgtaacaaacctgcacgttgtgcacatgcaccctaaaacttaaagtataataatagtaaaattaaaaaaaaaa
gaatga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 91537379 91537700 1001076 0 - pAlu10-91678525; RIP_Alu_chr10_091_01 NA NA SINE Alu Ya5 tatatactatatattcttttttctctttttatatataatataataattaatatagttcaatatattatatattataaaaaatatatatgatggaatacta
tgcagcaataaaaaggaatgaattaacagtatttgcagcgacctctatgagaccggagactattattctaagtgaagtaacgcaggaatggaaaatcaaa
catcctatgttctcactgatacgtaggagctaagctatgaggactcaaaggcataagaatgatacaatggactttagggacttgggggaaagggtgggag
aggggtgagggatagaagactacaaataggctgcagtgtatactgcttaggttatgggtgcaccaaaagcttacaaatcaccactaAAGAACTTACTCAT
GGACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAACTTACTCATataaccaaacaccacctgtgtcccaataacctatagaaaaataaagtttaaaaaaaagaataga
aaacatttgccttgttacctactacccccccaaaaaaaactgggctaaggacatgaatagacaactctcaaaagaagatatacaaatgggcaacaaacat
attaaaaatgctcaacatcactaattatcagggaaatgcaaatcaaaaccacaatgcaatgctatcttactcctgcaagaatggccataatttaaaaatc
aaaaaataagagatgttggtgtgtacgtggtggaaagggaacacttttactctgctggtgggaatgtaaactagtacagccactatggaaaacagtgtgg
agattccttaaagaactaaaag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 92959209 92959530 1001077 0 + pAlu10-93100347; RIP_Alu_chr10_092_02 NA NA SINE Alu Yb7 ttacattcaattcatttattcagaattccaaatatacatagtattttgtgttgcttagtaactttgtttaatgtgtttacattttatcattaatcctttt
ttctgacataatttcatttactcatctgttacctgactaatattttcccttagtctattaattatgttaattgatggaatcttccttgtagaagaagaga
actttacaagtgagggacttcctctttagacatctgtcagaagtcagaggatggggctgggcacagtggcacacacctgtaatcccagaacttttgggag
gctaaggtaggaggatcatttgagaccaggagtttgaaaccagcctggacagcatagtgaggctttgtctttacaaaaaaaattagattaaaAAGAAAAA
GGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACA
AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCAACAGAGCGAGACTCCGTCTCGAAGAAAAA
AAAAGAAAAAAAAAAAAAAAAAAAGAAAAAcgaagaaaggaattggaggatatctgctgataggagtagagtctcccagtttagtagctatcaatgggca
ttagggaatgaatgaatgaatgtggaaccaatatgcacgtgtcaactcaatgagattgacatgtggaaattgagattcccaaatgggtgtttttgtttgt
tgtttatttgttccttttaatctctaccatttgtgtcttttgccacttctggcatttagatggatagcagatcatagcattagacaatctataaagcttg
ggcaatttctaacatataaatgatttgcaacttcatatgccccactgctctcccttaacgcttccttcttcctagagggatgggcccccacctgtctgct
gggagatttggatgcccttccc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 131263887 131263925 1001078 0 + pAlu10-100435311; RIP_Alu_chr10_131_01 NA NA SINE Alu Yf1 ttttttcagcaccacaccacacctattccaaaattgaccacatagttggaagtaaagctctcctcagcaaatgcaaaagaatagaaattttaacaaactg
tctctcagaccacagtgcaatcaaactagaactcaggattaagaaactcacccaaaactgctcaagtacatggaagctgaacaacctgctcctgaatgac
taccgggtacataatgaaatgaaggcagaaataaagatattctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaag
cagtgtaaagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaatcgacaccctaacatcccaattaaAAGAACTAGAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAAACACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAACTAGAGAAGgcaagagcaaacacattcaaaagctagcagaacgcaagaaataactaagatcagagcagaactgaaggaaataga
gacacaaaaaaccctcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaacgaaattgatagactgctagcaagactaataaagaagaaaa
gggagaagaatcaaatagatgcaataaaaaatgacaaaggggatatcaccaccaaccccacagaaatacaaactaccatcagagaatactataaacacct
ctacgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacactctgccaagagtaaaccaggaagaagttgaatctctgaataga
ccaataacagga Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MGMT:NM:002412:2/5
0 chr10 111026385 111026689 1001079 0 + pAlu10-111167520; RIP_Alu_chr10_111_01 NA NA SINE Alu Yg6 atatttactgtctcactctttacaaaaagacattgcaatccctaccctagaaagaaaagtatacaagtaacacactattgtaatgtaacatattttaagt
ttttattaagatatgtatttaagtgatatattatttttcatttctactgtgttaagatgatattttataagtaagttacctcaacaactttcaaaaatat
ttatgttaagacatagttccttgggcaatgtacttgttacatgaaatgagattttatttgtttcaaatgtgtcttaacaagggaggactttggcataggg
ataggaaaatcagtgaagaagtttcttttctcttaggcctgactttggtatcatcacagatcctgaggatcataagaagccttaaAATTTACCTACATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAATTTACCTACATTAatgctgatctaatgtttgaatcttcttcacactaaatgaccaccatttctttacatttcttcactgatagataatgcata
tattctcaaggaaaactaacctcttctggtaagccctgattgaaactaggcttggcattaagtcaaaatctgtttcaattcaccaggtcccaaaaagaat
agatttaattcctttcccatattagtgcacttaagtatttgacaactactctatcttcctgacttttaaaaaactggaacaacagaacattgtaagagac
ttatcaaagctgtctgaggattttatccacattttctcattaacgtctcacagtgacactagtcagaggaaagtattatcatccctcttagacaacttgt
ccaat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 119624274 119624595 1001080 0 - pAlu10-119765412; RIP_Alu_chr10_119_01 NA NA SINE Alu Yb7 ttagaagccctgggatgagagaagaaacattcctgaggatcatgccctttaccaatattcaaatcacagcctaaattgggtggctgaggtgaccctctag
ggtatactagatctaagacatggcccgcaaatgatcagcattgcatcggaggccccagtgggctggtctggctggcagattacatggagaagatcactga
tgataggtaggtgactctcccagttctaatcaggccagggatgggacaagaggaggcaggagaacttaatgcccagccaagctcagtctttgtcccaacg
cagccagacagttcacattcagccagctgctactgatgaaatttgcatctgaggctggatactgattctcagaaggttttcctataaacacAAAAGATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGATTCaccaatgagttaacactgccctccttgcccataccaatgggaatgattactcctgtgaaggaaattatt
ttattttctaaattaagctagattttattcaaaaaaaatttttttaccaattctcagagatcaaattactgagtctttttattgctttttgggtcactgg
gaaaaatagtctccagacttttcctactgagccgggtctaatcaaaatatccacttctgttcattagctgttcttcacaccatagagcaccttcagatgt
ttataaaccaacctcgaatctctctctcaggcttttttcctatttgagaagcccagttcccacagtgcccttgttgattaggggagggctgcatgtagcc
ttgctgggaccataaccccagc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 129455304 129455598 1001081 0 - pAlu10-129494810; RIP_Alu_chr10_129_02 NA NA SINE Alu Ya5 gggggtatacaactaagttatattccagttagagctgccagatttagcaaataaaaatagaggaggatgccccccaaaatttgaatttcagatacacact
ttttttagtatgtcccaaatagtgaataaatattcaaatttaattggagtcctaaattttaactggcaattccaacttcaatacaagctcaagttaaaaa
aactacccttaagtttctctgtcctaatttttgtgtatatttacaaaataaatttactctttaaaatttgaatttctattccatttcaatctatcaaaat
ttgaatttaaaaaaatgaattttctttaaaaagtgaaactggaaaatgacaatatatttgatgatcataataaaaagttgaaaaatcttAAAAAAAACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACTAatgactgcagtaggaatttccacgggaagatttcctgagtggtcaagcaagacttttctgccagcattaatgttattttgacttgattttaagt
tgtttttgatatcaatgcttgtgactaaagtcacctcatatttcagtgccatactacaaagctgacagaaccttggcaacacgaaccctcgtattcactc
cctataccccactacatttgtttgctgtttcaagccactacgtttgtgctcatccagtccctgctaccaggaatgccttccacccagcccaggtggggaa
gcacaatttgcccttcaggactcaggagtaggggttgaaaccgccattgctgacataatccattccatcttgcttccaacctccaagttgtcctt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 130046343 130046659 1001082 0 + pAlu10-130085857; RIP_Alu_chr10_130_01 NA NA SINE Alu Ya3 aggcaaagatttcatgacaaaaacatcaaaagcaattgcaaaaaaaccgaaaattgacaaatgggatctaaaccaaagagcttctgcacagcaaaagaaa
ctatcatcagcgcaaacagacaacctatggagtaagagaaaatttttgcaatctatcaatctgacaaaggtctaatatccagaatctacaaggaacttaa
gcaaatttacaagaaaaaaaacaaccccattaaaaagtgggcaaaggacattaacagacacttctcaaaagaagacatgcagtcaacaaacatattaaaa
aactcagcaccactgatcattagagaaatgccgatcaaaaccacaatgagataccatctcacaccagtcagaatggcaattattaaAAAGTCAAGAAACA
GGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACAAGGTCAGGAGATCCAGACCATCCTGGCCAACATGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCAGGGCATGGTGGCGGGTGTCTGTAGTCCCAGCTACTTGGGTGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCTGTCTAAAAAAAAAAAAAGAAA
GAAAGAAAAAGAAAAAAAAGTCAAGAAACAaagatgttggcgaggctgtggagaaataggaacgcttttacactgttggtgggaaggtaaattagttcaa
ccattgtggaagacagtgtggcaattcctcaaagacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatata
aatcattctattataaagttacatacgtgtgtatgttcactgcagcactattcacaatagcaaatatatggaatcaacccaaatgcccataaatgataga
ctggttaaagaaaatgtggtacgtatacaccatggagtactatgcagccataaaaacgaacaagatcacatcctttgcagggacatagatggagctggaa
gccattatctttagca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 132748480 132748811 1001083 0 - pAlu10-132787987; RIP_Alu_chr10_132_01 NA NA SINE Alu Ya5 tttgtcatcttttgtttcaaagtgcatagtatttagatagtctaaaatgtgctctgcaaatacttccttttggaaattttgataataaaagttataaaac
gctagaagtgcagtggttcttcacttttttttttttataatggacctcagagattgtgagaaaaatgagaatctacctagtcatactcatagcaacatgc
ataaaattgtgctttattgcaataggcatgaatatctttaataaagacaaatgactacattttgtaggccatcattttgctttcattttctcgggtgaaa
tttgattcccatatcttgtgaaataattgacacaaatctgatttgggacaagaaaaccgaaaaacaactttcgtaatgcacacAAGAAAATGCGCGTGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAAAA
AAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAATGCGCGTGAGGgaggctcctagactgggctgaaccgggaggcgaaagtccggggtgctcag
ccttggccaccaggcacctttgacatccaattgatcttgcctttccttttgtggcagtaaatgttgaaaatgctgatttgcaaaaatttccatttgcgat
agacttagagcttttagaatttgatttgccaggcaggagtctattttaatctaggagctagagagttctctgagttcagcatgggtccagttgttttctt
tgttcttatgtcagtaagggcatcactgataagttcttctcactgacaccctgccagaaatcaacagcttagaaacacacacttcagtatgatgccatct
cagcaaactgaccatcacaggagcttgcagagt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 4997446 4997755 1001084 0 - pAlu10-5107582; RIP_Alu_chr10_004_02 NA NA SINE Alu Y ccagcttcaattgccaatttggtggcctctaaagctttacttttaggaacctgggggagtaaccataggtagtattttctgactaatgtgcctgagagtt
agttcaggcacaagtagcgacgttcacaaaaatcagcttttcctcctttcttggatgagttctgtatgtagaatcatgagcccatcccagtctccctggg
tctttcccagttagtaataaaggttgggcacagcaggaacttctgcagtcccagaaaaatcactgcttgaccactagtttggaagtgtccccaaaacaat
ttcaggttcagtcattttttggaaaaattaacaggatgcaacctatagttatagatataatcttaattatttttagtatggtaAAATTAACACAAGGAAT
GGCCAGGCGTGGCGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGCTGGGCGGATCATGAGATCAGGAGATCAAGGCCATCCTGGTTAACAACT
CCATCTCTACTAAAAATAGAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGGGGCAGGAGAATGACGTGAACCCA
GGAGGCGGAGCTTGCAGTGAGCTGAGGTCGCACCACTGCACTCCAGCCTGGACGACAAAGCGAGACTCCATCTCAGAAAAACAAAACAAAAACCAAACAA
ACAAAAAAAGAAATTAACACtagccacatggaaggaaatatgaaggaatacagtgtaagctcctgtgattcctctcccaccatattgcacagaatgcact
gactttacccggaatcatattttgtcaatgtatgtgaactgttgtctacaagagatgctctctacatactccattactaagattttgtctgggactggtt
acattgactcactctgcttcgcaggcacaaaacttccaaaagtctccaaaaggaaagcaggtgcacagaaactccgcagtttgcacaagcagttacttac
agccaccattcttatcagttaggaaatagtgagaaatccaccttatcagataccagcaggtttatatgggaaacaggcctgtctatggatagcagtctat
tat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:AKR1C1:NM:001353:1/9
0 chr10 46117913 46118212 1001085 0 - pAlu10-48826771; pAlu10-46573022; RIP_Alu_chr10_046_03 NA NA SINE Alu Y ttgagaccaacctaggcaacacagtgaaaccctgtctctacaaaaaaaaaaaaaaaaaaatacaaaaattatataggtggacatggtggtgctcacctgt
agtcccagctactcgggaggctgaggtcgaaggatttcttgagcccaggaggcagaggctgcagtgagtcgagataatgccactgcaatccagcctcagt
aacagagagaagccatttctgaaaaaaaaagaaaaaggacttatcattatctaattcaatatattctataataatcaaaaaataccattgaatgaatggg
gaagaaaattagatcaactgctgtgaagacacttgtttacttctgatcaagaaatagcagcagattatacctctgtggtattagtaaaacaTATCTTTGC
GCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATTGAAACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCAGGCATGGCGGCGTGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AGCCCAGGAGGGGGAGCTTGCAGTGAGCAGAGATTGCACCACTGCGCTCCAGCCTGGGTGACATCTCAAAAAAAAAAAAAATTAAATTAAAAAAAATATG
TATCTTTGCtttggttccaaatatattttttaaatgtttgatacatggggacacatcacagtgtatattatcaaattactttgagttataaatagaagag
gaaaatcaaaataggaaaattacaatagccttaaatctctcagttgatgttaaaagtactaaattctggcagctagggtaaaattaatataataaaagaa
tagatacagcactcactttttctatacccccaagtattttaattatttctatatttggaaatgaattcataatctattagtcacattatttgaaatttca
aattataattttatttgtttcagataaaagcctcatcctttaaaaacatacctttgggtgaataaacaaagcaaactttctatgactttcatataaacta
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 46254447 46254757 1001086 0 - pAlu10-46709553; RIP_Alu_chr10_046_04 NA NA SINE Alu Y aaaactcatagaaacagacagttaattggtagtcatcagaagctagggcatggggaaattgcagagatgtcggtcaaaagacacacaattccagttagcc
aggaggagtaagttcaaaaaattgattgcacatcatggtggctacggtgaataacaatacatttatatttgaaaattgccaatagagtagattttaagta
ttctcaccacacacacaaaatatagtaagtaggtgaagatgttgtagaggcccaaattcgggctcatgtacctgatgctcaattgaaaccaaacactgac
acaccaatgcttggggatagataaaagtttattccatttggccaaagtgagaacggggcaagatctctcagacatgtcttaacaataagacgaaGCAGAG
GGGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCGGATTACGAGGTCAGGAGATGGAGACCATCCCGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTGCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAATGCAGAGaggatatttttgcagctagacagtaagagagggggagttttagggaaccaaggggaaagtctgtgtttctttaatctctgata
atatcctgagcaaccagacttctgggcctcagcagttagttgcaacatccttataggcattcattccttctgcaaatgttttttgttaccttaaagttat
cttctcctggttgacaaagaaatagtaaatcagcagtttgcaattgtattgtgagaacaagggatgttggcttttatgcaagcaagcaagggcctaattc
gaatttttgttatctcaatcactaaaaatgctgaggtattgacacctcaaggggtccgattacaaggtaatgcatataatgcgtatgtttagcttgattt
agccattccac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 48642918 48643245 1001087 0 + pAlu10-48965220; RIP_Alu_chr10_046_05 NA NA SINE Alu Y ttacttttctagaatctcattcttaattatagttttatatttttccttcaacaaagtcttaaaacccatgcagctggtgtctattatttacattctgtga
tgtattttatttgactttgtgtttttagtcttttcacagaaatccttttattgtgatcttcttgtccaaaagcacttatttcatatctcttttccatacc
tatcttcattagcaggttgcatttcagtttcttcagtccttttttagataatatattttactacatctgtcttcacaacactgtatacgctctgatgatc
aggtctcccttcttttttttttttaaattctcgtcctctttgggacccgtgacaaagtaaaaggcagatttttttctcacctgacttaaAAGTAAAAAGG
TGGCCGGGCGCAGTGGCTGATGCCTGTGATTCCAGCACTTTGGGAGGCTGAGAAGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCTGGCTAACATG
GTGAAACCCGTTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGTGAGACTCCATCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTAAAAAGGcttcatatgtttctcctctgattcttcttaggcccagcatttccaaaaacaaaatagtaca
caaaacattagttgtaatgatacttcaaaaggttcaaatactagtttttggctgctttctgactatatttttcttctaaagaaattttgttatgaagtat
tgaactattcagtatactttaatattttccaaataaagtttccaaactgatatttaacaatattctcttatattcaaacatattctgaactattttctgc
tgtgtctctagatcaatatttataaatctagattgttcatgtattttttttcctttgctaactttcaagatcatatcaaaaagcaccactgttgattcca
ttttttatgtttcattatttgaaactat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 111701656 111701657 1001088 0 - pAlu11-6101314; RIP_Alu_chr11_111_01 NA NA SINE Alu Yb7 atcacaggcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctagga
atccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacattccat
gctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttctt
cacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatcgccaaggcaatcctaagccaaaagaacaAAGCTGGAGGCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCCCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGCTGGAGGCATCacactacctgacttcaaactatactacaaggctacggtaaccaaaacagcatggtactggtaccaaaacagagatataga
tcaatggaacagaacagagccctcagaaataacgacgcatatctacaactatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattcc
ctatttaataaatggtgctgggaaaactggctagacagatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatgga
ttaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcacaggcaaggacttcatgtctaa
aactcc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 27264463 27264778 1001089 0 - pAlu11-27346935; RIP_Alu_chr11_027_01 NA NA SINE Alu Yb7 cgtctctactaaaaatacaaaaaattagccaggcgtgatggcacatgcctgtagtcccagctactcgggaggctgaggcaggagaatagcttgaacttgg
gaggtggaggttgcagggacccaagattgcatcactgcactccagcctgggcgacggagagagactccatctcaaaaaaacaaacaaaacaaaaaaaaac
aaaaacttgtgggctgtagtgcttagagtagtgcttagagtaaaatttccagccttagataattatattaagaaaaagagactgtgaattaaggagctaa
tcatctaatctaagaaaattaaatatcccagaaatagtagggaaaaaaaagaaaggtacgagacgcattaatgacacagtcttAGAAAACAGAACACAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAAACAGAACACAATaaaaagaataagaaaaaaagaaaaactgctgttgtcttagtttcttcggaagcagactctgagatga
agatgagtgtgtatttcacccgtgaaggaaaagctccgtagagaagcaggtaagggggcagtgaaaactggccagggaaaaataggcaagggtaccattt
caggccaggtcccagggagaacagctcccatctgatcccacggtgggtttctgatgtgtgaagtacactcagcgttctttctcctggggcctccatactc
ccacagctgtcagttattggctaagggctaactggagtggatgtggattcctagacacttcagtgtctctgtgtaagtggccaaagtgcctccagtagcc
tgagggcagtcttctg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 31873304 31873618 1001090 0 - pAlu11-31955758; RIP_Alu_chr11_031_02 NA NA SINE Alu Ye5 caggcacaaaaaaattaaggaaggtccagtctgtcttctcaagtaggtcataaactgattgcaatacaatgtgataaattctattaacacacacacagtg
caatgggttaaaagacggggtagtatttaattctgcagtgggcctgaaggacataggaggtcaaagaaaactatcaagagatgccttgggttgaagtttt
ctagcatatcaatgatcaatttaacattcatttgcatcttatggcccacaagctctccagagtcaaggaattagttctgctattcctaactttgctttag
gaacctccttgctattcttagctctcaaacaaagactgatgggaaaacagtggaagttctggaccttaagaacagattgaaccattAAAAAAAAGAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAACCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAATAAA
AAAATAAAAAATAAAAAAAAAAAGAAAGAaagaaagaacagattgagggatttttctcggaagttagacaaattttaaaactttcaacctaagagaaaag
agtcaggataaaaatcagcttcctccctccaacagaaagctagtgttacttggtagagatggaaaggaaagagacaacaaataccatcccaccccacttt
cacttttactctctccaaagaaataccatcaccccatcaagtgtaggatacactaagacgtaggggatggaggagactagggtcatctctgcatatttaa
acttgcatccagctacttgtcttgaattccactcctaccctaaggcctttggcaaactcagggaacttaaagttataacagattgactgacaacctccca
gctcacctgtaatcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 33494264 33494572 1001091 0 - pAlu11-33576739; RIP_Alu_chr11_033_01 NA NA SINE Alu Y accacacagttgcaaagtgagccagtctaattctggggagcttagacaaatgtggctgattccatacctttgctaaaaaaaaagttgccaattcttcagc
cataggagaaattaaaggttggattggtcagaaagaaaacaggtgttttttgtttgtttgtttgttttaagactgaataattaggaagaaaaaggcagag
gagggaatttattttttccctcataacttcagagaattaggaataatggcttcacatatccatccctgtaaggaagataggagtaagaaaagttggtaga
cttctgggcctcaacttcttgctcagatatagctgtggtaatttggttgctcagatttctcgctcagatatagctgatcacatctcAAGAATCACCTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATCACCTCCAGgctgattggtagtggctgcctagactgttatgaagaattctaagcacagtcctggattggcagggaagggttctgg
gatcaattagcaatgtctgccttgggtgctgtagtacagaatggcagcatgaatttggacagatgtttagcatctctggggaaggtgatctctgaggttt
cttctagcatctggtccaactgcattcaatttcagatgaagctaggaccaataatgcttgagtgacttgccaaaggtctagcaccagaactagaggattc
cctctaatagtgttcttgctaccaacagatgcatcacgttacttttctggagcactgactcagagatagaggaggtaaaatgaagcaaggagaagcaaag
ggaggaggtt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 115255686 115255687 1001092 0 + pAlu11-36736991; RIP_Alu_chr11_115_01 NA NA SINE Alu Yb7 tgcgtagaggtgtttatagtattctctgatggtagtttgtatttctgtgggattggtggttatatcccctttatcatttttttattgcatctatttgatt
cttctctcttttcttctttattagtcttgctagcagtctatcaattttgttgattttttcaaaaaatcagctcctggattcattgatattttgaagggtt
ttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttctttta
attgtggtgttagggtgtcagttttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttaAATGTGTCCCA
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATGTGTCCCAGgcgattctggtatgttgtgtgtttgttctcattggtttcaaagaacatctttatttctgccttcatttc
gttatgtaccctgtagtcattcaggagcaggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgca
ctgtggtctgagagacagttttttataatttctgttctttcacatttgctgaggagtgctttactaccaactatgtggtcaattttggaaaaagtacgat
gtggtgctgaaaagaatgtatattctgttgatttgtggtggagagttctgtagctgtccattgggtccgcttggtgtagagctgagttcaagtcctggat
atccttgttaactttctgtc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 37623223 37623518 1001093 0 + pAlu11-37705700; RIP_Alu_chr11_037_02 NA NA SINE Alu Yb7 tcagaccttggtagatagctgtaactgaaaccacaggaagtgaaatctcagataagagggtgcctctgtcatttttactgtagttgtgattgtaggatgc
caaataaaatcaattaaatttatatttatgtttagatgaccatggaccaggttgctttgagagagtaaaacataatcaggacatagtgacaactcttaaa
aagtgtgtaatttatcgagtgtaaagggaactgagagttagaaacatcttgtaagacagtgaaaacataagctcctacccacatttcataaacatatgtt
tatttctgcccaatatcttttgagagaatcatgtgtattaatttttattgctgctgtaaccaattacaacaaatttaatggcttaaaatGTTATACTTCT
CTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAG
CCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATT
GCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTA
TACTTCTgtaggacagaagttcagaataaatctcagtgttctaaaattaaggtctttcttgatcttggctccctctgaaggttcttggggtatatccatt
tcttatctttttcagttcctagaagccacctacactatgttcctcagcttccagccccttccagcaatggcttcattctgattactgtttccattattac
attttcttctctgaatctgaacctcctacttcatttttataagaattctttggttaggttgagctttcctgcataagctagcataacctcagatctcagg
attctcaactgaattggatctgccaagttccttttcccattcaaagtaacgtattcacaggttctggagattagaacatggccatcttgaaaaggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 40963609 40963916 1001094 0 - pAlu11-41046081; RIP_Alu_chr11_040_01 NA NA SINE Alu Yb7 cagagccttctgaatcaaacttcttttatatcatatcactttggctttatttttattttgaaacaatttcaaattcacagaaatgttgcaaatataatgt
ggaaaactttcatatatagtttaactagattcactagttttactcattttgctaatttgttttatagttggtctgtgtaaaatgtatataaatgcttaca
cgtatattaattattataataaaaattatatatgtagttgatttttaaataccttgagagtaggttaaatttatcatgctgttttaccccttgactctta
acaacagcacagttttcaagttcaaaatatttaagtgacacaatgaatactatctattctacaatccatctacttgtcaattttttAAAAATGTTCTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAATGTTCTTTAtagctttctttttttaaccccaatattaccaaactacaagaaaataaaaaagaaaaagccatctttgttaccatagtt
atgataaggtacttttccccccctattaactgaaacacaaaacaacaaaaacaaaaaggaagataaatgtatctttcagtcactcagcggaagaaaaacc
catagactcataactgtgtaaattttaatgactggccattctttctgtaatgtgtacaaggaggaaaaaagcatgtatctcaaaagacaatagtgatgaa
actgaatgttactgttttcatgctaaactaagcccattaggtaagaatcctgagaagtatgaacaagccacacagaactcttgggtctcctccccctgct
tgtcttgc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 57719420 57719733 1001095 0 - pAlu11-58213623; RIP_Alu_chr11_057_01 NA NA SINE Alu Yb9 attgaaaccaatatatctatatctatatctatatagatatagatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcccatgatcattgaagc
attattcgtagtagctgagatgtggaaataacctaaatgtccactgacatatgaagagatagagaaaatgtggtacagttagccctctgcctctgtgggt
tccacagtcatggattcaaccaatcttggatcaaaatagttgaaaaacaattgtgtctgtactgaacgtgtatagacttctttcttgtcattatttttta
aacaatacagtataacaactatttaaatagcacttatgaatagcatttacattgtattagggattataagtaatctagagatcatttAAAGTATACAAGA
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGTATACAAGAAGagatgtgcataggtttatatgcaaatattacatcattttatatcagggacttgagcatctgcagatttggg
tatttgtggaaggtcctggaacaaatcccctgatggacactgagggatgactgtatatattagaatattactcatcttttaaaggaaatcttaccatatg
caactacacagatgaaccttgaaaacattatgctaagtgaaataagtcagtcacagaaagaaaaatactacatgatttcactttaaggtatctaaaatag
tcaaactcataaaagcaaaaatagaatggtggttgccaggggcttggggccaggaagaatgaggaattgtagttcaataggtataaagttccagttatgc
aagatgaataaattct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 57977198 57977510 1001096 0 - pAlu11-58471402; RIP_Alu_chr11_057_02 NA NA SINE Alu Yb7 caaatcaaaaccacaatgagataccatctcacaccatttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaatag
gaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcaattcctcagggatctagaacttgaaataccatttga
cccagccatcccattactgggtatatacccgaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaata
gcaaagacttggaaccaacccaaatgtccaacaatgatatcagtttattttaagcagataacaacttaactttgattgcatataaaAATACTACACTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAATACTACACTTTTatccccccccctccacattttaggtttatgtcataatttatttctttttatattgtgtatctttttataaatt
atcgtagctatagttattgatatagttttgtgtcttaacttttatactagagatataattgatgtccacatcatcattacaatatgatgttgtacttact
tttaccatgagtttttactttcatatgcttttatgctactaattaggatccttttatttcagcttgaagaactccctttatcattttatgtaagacaggt
ctagtatttatgaactcccttaatttttgtttgtttgggaaagttatctccttcatttctaaaggacaactttgccaggcagaatattcttcattggcag
gtttttgttcttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 58565879 58566193 1001097 0 + pAlu11-59060085; RIP_Alu_chr11_058_02 NA NA SINE Alu Yb7 cataaaattcggctttgggaaattcacagggatttttgtgttctacccatttgtttcatttttcttgtgtacctagataggaaaattcattggttaagtt
aatcaaaagaacctgagagtaaagtcagtattttatgtaaaactggaatccttaatttctgaaaaactgagttctttctggcttatacattaggactgga
aggcagagaagtcttacacaaatggcaaaatcttactaaagataacttagagtggaacattccaaatgaaaaacaatgcattgaactacatttaaaaatg
agggctctcagtaaagtcccttttggctaagaaccggtttggcactatagaatgtcaactgttatactctttggcacatttgtAAGAATTCCAAGTGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAATTCCAAGTGTTAtttcaaaggaaatttacagatatgtttccaaattttctatgcttttttcttatttttgtaatgaaact
gggaaaaatttcaaaatggttatagatctgaaatatttggccctaagaaactaaagaaaatctttgccaactcctgctctgaggtttccagtcacaactg
ttcttagatatttcctattccagaagaaagaagactcttcaggcatctgatgaccaaaataaaagaaacattatgatggtggtggtggagtgttctgcta
caggcatgtgggaggctcacagaactcttaatattcacttttaattcattccaccagagaggaaatgcatgggttttggataggactctgtcatttatcc
ctgtaagaacttgag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 60864377 60864701 1001098 0 - pAlu11-61358592; RIP_Alu_chr11_060_01 NA NA SINE Alu Yb7 ccaatttttaccaagcatctagtatatgctgaaaaggaaaaaaggcgactaagtcacagtctccaccttcaagaactcacagcctggggagaggctaggg
aagcagatacccataaattgaaaatttatgtgaggtggtaattacagtgatggagtccacactaggactggctgccaaccagctcagggtagtggggaga
tggagatcagggagagccttccaggtggggagacatcagagctgggcctctgtagaatggtaggagttagccaggccaaaaggaggctggacaaggaaag
aattttccaggccacagatactgcataagcaaagccagagatgatccatagcctggcaggtacaggagctggcgtgaagagaccatAAGAGGAAGGCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGAAGGCAGGGgatggctgggcgcggtggctcacgctcgtcatcccagcactttgggaggccgaggcgggc
agatcacttgaggtcaggagttcgaggccagcctggccaacatggtgaaaccacatctctactaaaaatacaaaaattagccgggcgtggtggcaggcgc
cttgtaatcccagctactcgggaggctgaggaaggagaatcacttaaacctgggcagcggagactgcagtgagccaagatcgcgccactgcattccagcc
tgggcaacagagtgagactctgcctcaaaaaataaataaataaataaaaaataaataaaagaaaataaaaaaaagaggaaggcagggatgatgggagatg
aaggtggggagtcagggagctatggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DAK:NM:015533:5/18
0 chr11 71539258 71539560 1001099 0 - pAlu11-72084202; RIP_Alu_chr11_071_01 NA NA SINE Alu Yb7 aggcgtgagccaccgtgcccacccccacatttccttttcaattgtggcttaaatagtggctgtcctaagacttctgtcaaccacagacaattgttttctt
attttgatcctcttcaaaaggtggtttataatcaactataggattttgacaggttctcttgaatgcaggtttctgataagtttggagattgtgacgtcag
aatagaggaaaaactttcaggactcatggacagctgaaatgttcatgacgattaaacaggacaggagttaactgcatggaatgaacaaatagaagactga
agaaatgtttttgactttgcttaaaatgctgctgaaactttgttttgttttcagagtcaggaaaaattttgagctatttacaccttttAACAATTCAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAACAATTCAGTAaagtatacttctggcaacatatttggagcatatttgtttttttctacctgatttttccagaattaggaaactaggtgtgagtatt
cttaacttatagcaatatagttatttgcataagtgcaataagaatctgtttcttggccgggcgcagtggctcacgcctgtaatcccaacactttgggagg
ctgaggtgggtggatcacctgaggacaggagttcaagaccagcctggccaacatggcaaaaccctgtctctactaaaaataaataaataaaaattagctg
ggtgtggtggtgtgtgcctgtaatctcagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagatcgtg
cca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 73822720 73823054 1001100 0 + pAlu11-74367669; RIP_Alu_chr11_073_01 NA NA SINE Alu Yb7 aaatattttatttatttatttattttatttttgagacagagtctggctctgttgcccaggctggaatgtagtagcacaatctgggctatctggaacctct
gcctcctgggttcaagatattctcctgcttcagcctcctgagtagctgggatcagattaacaagtattttaaaagattgtctcctaatcttaaatactgg
ctaaaatgctgagcaacaggaactctcatacactactgggtagaagtataagagaatcaatttattaaactgtttggtaataacttccaaaggcaaacat
aggcagaccctatgaccaagcaatttcacttctaggtgtatacccaacagaaatgcatataaaaacatcattattggaaatagctcaaAAGTGGAAACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGGAAACACcccagatgtccatcaacagaagaacagataaataagtttgtagagtatttcta
aaacaaaatacttagcaatgaaaactaatgaaccacagctgtacatgaaaatatggttaaatctctgatatggttaggctttgtgtccacccaaatctca
tcttgaattataatccccaggtgttgagggagagatccggtgggaggtaattggatcttgggggcggttttcccccatgcctttctcgtgatagtgagtg
aattctcacgagagctgatggttttataaggggctcttctgctttccctctctgacttgctctctctcctgctgccttgtgaagaaggtgcttgcttccc
cttctgccgtggctgtaagtttcctgcggcctccc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 89774395 89774396 1001101 0 - pAlu11-74692148; RIP_Alu_chr11_004_02 NA NA SINE Alu Ya5 aatctccttaagctgataagcaagttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattcttatacaccaacaacagacaaacag
agagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaagga
gaactacaaaccactgctcaaggaaataaaagaggacacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggcc
atactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaAAGTTCATATGGA
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCCGCTAAAACA
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAAACCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAG
TTCATATGGAaccaaaaaagagcccgcatcgccaagtcaatcctaagccaaaaaaacaaagctggaggcatcacactacctgacttcaaactatactaca
aggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacgccgcataccaacaa
ctatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaag
ctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaaaccataaaaaccctagaag Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 92742464 92742766 1001102 0 + pAlu11-93287245; RIP_Alu_chr11_092_03 NA NA SINE Alu Ye5 cccatttcataatgctgtcactttggggtttaggcttgacatatgtatttgttgtgggggacacaaacattcagtccttaatagtcactaaataagtcca
agccccaccctctaaaaaaacaagaggagaaatttggcaactgagtgaatgaaggaaaaaatatttcgtgtcaagaaatagaaagaaagtagtggcaaat
gcaaaaaaaaaaaaaagttgtttgaaattcccttattagtaataagtatttgttataagacagactttttacatttttaacaataagtgacaaattctgt
attttcctagcaaaaattagagatggtaaaaaatccaacatgaatgatttgacaccttttcttttgtttgttttccctaataggtAAAGAATGGATTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGAATGGATTTACtttttttttctcagaatgaagatgtacaaatgaaagaagccttatttgctgtactttaaaatgaataacatttttaaatatg
tttgtctccccactttttaaaaggaatttagagcaaagtcaagagaatgggacaagcaagagatattatatcagactcatctgatttctttagatgctca
acaaaaattattatctgagaagtgtaatcagtttcaggtaagttatctaatactattctctaaatcaaaagcagaagttaaatattggtatctttaccat
tcaccagtaatctatttacaaacagacatgccaactaagaaaaaacgagagtaggtccaaaggtgggtacagtcacaagtgcatagaatatctgttaatg
gtg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CCDC67:NM:181645:5/14
0 chr11 98781547 98781873 1001103 0 + pAlu11-99310323; RIP_Alu_chr11_098_01 NA NA SINE Alu Yb7 ttgagttaaatctgcttggtgttttataaccttgcacttgactattggtatctctagatttaggaagttattatccctttgactaacattctatccctct
ttttctaccttctctttgaagacagtaactcttaggtttgcctttttgaggttattttctagatcctatagctgtgcttcattgttttagttatttattc
ttatctctcttctttgtgtattttcaagcaacctcttcaagctcactaattctttcttctgcttgatcgtttcttctattaaaggactctgatatattct
tcagtatgccaattgcatttttcacctacaggatttctgcttgatttttaaaaattatttcaatctctttgttaaatttacctgatagaattctGAATTC
CTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCtgaattcctttggtgtgttatctcgaatggcttggagtttcctcaacacagctattttgaattctcg
gtgtggaagctcacatatctctgtttctctaggattggtccctagtcctttatttagttcacttggtgaggttatgttttcctggcttgtcttgatactt
ctagatgtttacctgtttctacgcattggagagttagatatatattgtagtattcacaatctgggcttatttgcactcatccttcctgggaaggcctacc
agatattcaaaaaggcttgggaattgtgatctaatctgtatctgcttgaaggggcaccccaagcccaataatgctgtggttcttatagactcatagaggt
accaccttgatggtcttggataagagc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CNTN5:NM:014361:2/25
0 chr11 100795221 100795527 1001104 0 + pAlu11-101323986; RIP_Alu_chr11_100_01 NA NA SINE Alu Yb7 tttttgtgttctgttgagttcttttcactaatattttataattttcattgtagagatttttaacctccttggttaaatgtattcccaagtattgtatttt
tgtagctattttaagtgtttttattttaaattttttcagctagttgattgttagtagagaaacgctactgttttttaatgttaacttcatatcttgcaac
tttactgaaattgcttatcgcttctaagagtcttttggtgaagttgttagatttttctctatagcagatcatctgtcatttgcaaagagggacaatttga
ctttcccttttccagtgtggatgccatttctttctttcccttgcctaattgttctgcctaagactttcagtaccacattgaatAAGAGTGGTGAAAGTAG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAGAGTGGTGAAAGTAGacatccttgtcttgctctagttcttacaggcaaaactttcagcttttcctcattcagtatgatgttagctgtgggt
ttgtcatatagggactttgtggtgatgaagtatgttctttttatacctaatttattgagaatttttatcatgaagggatgttgaatgttatcaaatgctt
tttctgcatctattgaaatgatcatatggtttttgtccttcattctgttgatgtgatgtgtcacctctatcaatttacatatgctgaaacatcctttgat
cccttcaatgaatcccactagattgtattgtattatcttttcattgtgcttttcaattgagtttgctagtattttgttggggatttttgcatctattttc
agcacgg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 101977069 101977372 1001105 0 - pAlu11-102505827; RIP_Alu_chr11_101_01 NA NA SINE Alu Ya5 gagaagaacaatggaaaagggaaagttaaagcaggtagaagcctcatggctgagagtataatatacagcattgttcacttagaaaaattcagaggatttg
ttgggaacacgatgtaaaacagggttagatgtatcagatttaaagcaatgacaattttcacggagtttcatagaaataagctagtgctcagggaagaggt
cacagttggaggcttcgtgggttttgaatctcccacataaaggagacatttaaagatgtggagatgaaaaacagctctgtagagagaatgaggagaaaga
aaaaaagtctaaagaatgagcctaggaaatagaagaaaaggatttaataacaaccagagagattcagcactccgaaaataataacgatAAGAATAGCCGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAATAGCCGAcacttcgtggtcatttgcaacgtgctatgtgttgtgctaagaattttacagatattcactcatttaatccatactgtcattgtc
ctcagctggaattataacttagttctgtttgacatcagagacaaaacccctgtggtgaaatcccaaataaatctgggaaaaaagggtgtattttttttaa
gtgatcaacagtggaaaatgttgccaaggtcaccagactgaggactgaagaaaagggactgagtggccaggatagtttggaatatagtcacagcagagca
gtgaggaagaaagccagatcatggaaaggggttaaagagcaaatggggccaggcgcaatggctcacacctgtaatcccagcactttgggagaggcggcga
gtgg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MMP20:NM:004771:6/10
0 chr11 83622 83928 1001106 0 - pAlu11-1104836; RIP_Alu_chr11_000_01 NA NA SINE Alu Yb3a1 tctttttttcctgtgtattatttccttcagggaccttatgcactcttacacatccgtctattatttttatatggattactatacaattacatgttgaatt
tgtacttttcccccatatatcctgtcatatgttttcacctgagcatctcaatatctaatactcttatttgcttaaaatacacgtgattattttctccacc
ctgacatattttatgttcaactttctaatttctaaaaatggacctaccattgtcctatttattcttgcttaaatcttgatattttctttgagttcatgct
ccttcgtattcactccagctgtgataagtcaccaatcctttgggtttttacttaccagtatttctatttctgtttctatagccttaAAGCTGGAACTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGCTGGAACTGTGtagtcccagttcctctgtgtagccccccaagtctgctctatttcaatcttctcttaagggaactccttccctccgtttt
tcttttcctccatttgatacatcacacttatagatagggcatcttccctaattactggcttcatcctcaattcccgggacccataccttcactggcttcc
taaatttatttaataattctcatatacctttgagaagtttctaatgataggcaacaaatgaatattgactacctttcttattttcctttattcaccaaaa
tgatttttaggatgtagacaatctgtatgcttcaacatacaccaaacttaccatttttgaaatattttacaatctacttgaaaagacttctttagaccct
atattca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 46974423 46974692 1001107 0 - pAlu11-47049355; RIP_Alu_chr11_046_01 NA NA SINE Alu Yg6 aggtcgggttacccgcaaagggaagcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatattcaacatt
cttaaagaaaagaattttcaacccagaatttcatacccagtcaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctga
gagattttatcaccaccaggcgagcccctgaaggaagcactaaacgtggaaaggaaaaaccagtaccagccactgcaaaaacatgccaaattgtaaagac
catcaatgctaggaagaaactgcatcaactaaagagcaaaataatcagctaacatcataatgacaggatcaaattcacacattAACAATATTAACCTTAA
CTTTGGGAGACCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC
CGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTAGACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATTG
CACCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAATAAAATAAAATAAAAAACAATATTAACCTTAAatgtaaatgggct
aaatgctccagttaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctatattcaggagacccatctcacatgcagagacaca
cataggctcaaaataaagggatggaggaagatctaccatgcaaatggaaaacaaaaaaaagcaggggttgcaatcctagtctttgattaaacagacttta
aaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatacgcacccaa
tacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C11orf49:NM:024113:2/9
0 chr11 27778806 27778994 1001108 0 - pAlu11-27861288; RIP_Alu_chr11_027_02 NA NA SINE Alu Yb7 acactttcaaccaattgccaatcagaaaaattttaagtctacctatgacctgaaagtcccctcacactttgtctcgcccttccagattaaatcaatgtaa
atcttacatgtatttgattgatgtcttctgtctccataaaatgtataaaactaggctgtgactcaacaccttggacacatgttcttaggatatctcgagg
gctatgtcttgggccattggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttaactgttttcatcaacaagtccattgagtg
cactgagaacaagggggtggcatgtcatcattctgacccctgggggtgaattgtcttggaatacacacacatgaaacctaaacataaaaatgtGGGGCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCGGGGCTCagga
agcaccttccatattacagtataactctagtgtgattgagacaagagaggccctatggaggactccattcatggactggtcacattactagaaaggggcc
ttgagggccacttctgagttaagaggtaggtgtgtgtgtgtgtctgtgtgtgtagagcagatagtactcagttggctccagcaacctgctcccaccacca
ctagcagaacccagtcacatcccaatctgacttgaaccagagaggccccagttttagttgacctactcttgtcaaactcagcaaagactttcatgctgtc
aagtcaattctcagtcctttccttaacttgtcttttagcccaggcctctatccttgaccatcccagctgggagtgactatgtttggagc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 32854883 32855181 1001109 0 - pAlu12-32863776; RIP_Alu_chr12_032_01 NA NA SINE Alu Ya4b tataatgctgatgaaacatcactgttttggcatcattgcctcagaaagacactgactacagctgatgagacagcacctactagaattaaggctgccaaga
acagaatatgctgggatgtgctaatgcatcaggcatacataagtggggtgatagataaaaacttgtgtcctcactgttttcaaggagtgaatttcttacc
agtctgttattatgctaacaaaaagacctggagcaccagggacatcttttttgattggtttcacaaacatttggtaccaagtggctcatgcttgctgcag
ggagactcaattggatgatgactgcaaagattttgttattacatgacaactgttctgctcatctcccagctgaaattctcatttAAAAAATGTTTATTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGTTTATTCTatgtactttcccctaaatgtgacttcatcaatttagccatgtgaccagagtatccttagatcaataaagagtagattaaaaaaac
acttttcttaaatagcatgctagctaccagcagtgtgcagaggtgtgggtgtgagaaagtgttcaaaaggagtttagcctgaggatgctctatatgctgt
tgccattgcttgaaacaggtgtgcatgactggcacaactctggcctacaactatgtcgactggtaatgaagtcaccagatggtgactttgaaggattata
tatgtcaagtgagaaaaaaaaatgatggctgaactccttacctttgcaaaaaaatagaccttcacaatctgtcagttagctggaagaagtgaatactaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PKP2:NM:004572:10/14
0 chr12 39946099 39946400 1001110 0 + pAlu12-41376478; RIP_Alu_chr12_039_01 NA NA SINE Alu Ya4b ttagcataggggcagctgctgactgacccaaggatggactagacaaaggccattcacacttttttcttagccagatgcatgtaccacttgtacttagtta
tttcattgcatcatatttttaacttaaatcaatgtattgtaaaggatactattatcaattgcaaaccagaatgatgtgccataaatatcagggtaccata
aaaataaacacaggggaaatagtttacattgaaaaaagaaattaaacaataaaaataaattatgatggctctaatatctacgtaaaatgcatagctgaaa
ataagttattcaaatcaaagcctttttcttctcggttcgtaataaaatgatttgctttcacccagtgttgcttcgttcatgtcttAAAATGAGATATTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATGAGATATTAAaatcaataagttaattgcatttttttcctcttggtattgatactaactgaaactgagaatcccattttacctgtgcacctagt
tggatattgggagctggactgcaatttacattttcaattacagtcagtggtcctctgagcagtaggaagcaaatatgaagcaggaagctagatcccaggc
tactctttgacccaggtcaggaactcaccttaggaaaagatactttaagaaatctaagaaattattaaagaagaatggcacaaagaccaattctggcaag
aatggaagtgggggtagtagttggttgttctaacattttagctttttagtccactcataatcttagactgatctgttttttaaatcagtgaaggctgtgt
aa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 20753801 20754124 1001111 0 + pAlu12-20762700; RIP_Alu_chr12_020_01 NA NA SINE Alu Yb7 taaataattacacttttgtctcttctccaacagagtctcaataggtacagaccacatccatagctctcattttacaactcagttaattaaaacctaaacg
ttaatttttttagagtatcacagatagcaattagtaacaaaagtggctcttagataagctgccagttatttgaaatcaaaataattatgatgcttgcaac
agtaacctgttgacagaaggaactgagttaaaataatgaaaaattttcaaaatactccatgatcaccatccatacttacttcaatagtcttgaagcatca
taacagtcaatggtttctctgtaattattaacaatataaaattatatttaccatgatttcaatgctaaatgttctcatgtgtagttAAGAATTGAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGAAAACAGgttaacctcattaagtgattcttaacctactatggtcaaggaaccctttgataaaattata
aaacctgtaaccctcttctcttaagcattcacataaaaacatacatacaaaaatgttcttactttttcagtggggttcatgaacccattgaggtgcagat
tgcacaaaacagatttaaggtaacctgtttatcaacttgaatatttcagtaatgcaatacatcttttccttaccatgctgaataaacagttctctacttt
tctttttttttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcaatggcgcgatcttggctcactgcaagctccgcctc
ccgggttcacgccattctcctgcct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SLCO1C1:NM:001145945:5/15
0 chr12 82483362 82483664 1001112 0 + pAlu12-83892078; RIP_Alu_chr12_082_02 NA NA SINE Alu Yc1 tacaatagaagaaaatcatggacatcttaaatgggctaagggtttacattttaaatatgatggccatggtagaccacatttaaaggacatttgagaaaag
acttgaatgaggtaagaggattagcaatatgaaaataaggggaagggtagtctaggcagagggaatccagtgagccagttactcttctgatacctgcaaa
aagaggatgaaaattggtaattggtgaaaatacagatgggatttggggtagaatgtgttcatgcctagttttatcacagaataggaaacaaatttatcat
ttgaggatgagttgaagatatatgaaaattggtaaaacgtatgagagtcattgtgggaaagaaaatgggagccaactagggatacatAAGACTTGTACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAA
AAAAAGACTTGTACTCagcagggatttgggctgggaagagaataatttttcattttccaaaggatcattcgtgcagttgagcaattttctacaaaatgct
ttttggagtagacgtggctgagaagggggtgacatttgttcattacacactacctgtagcattttgtgggctgttctatattgcaaacactagtgtacaa
ttattagttttgcatatgaggtagcttagattcaaacagggtaagctggctgatgttaaacatattttcaggttgattttaggtgatgttatcatataat
aaggtaaaaatgctagaggaccatgctgatgaaagaacagatgataaaagtgttaatgtatacagacaagtgtgccaacaggtggtgatccaggggcagt
gaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 27325271 27325589 1001113 0 - pAlu12-27334173; Ya5ac2145; RIP_Alu_chr12_027_01 AAAACGTCAGAGCAGGGATG GTTGCCTTTAGGAAGCTACAGA SINE Alu Ya5 gtgctgggattacaggcctgaggcaccgtgcctcgcctcaatttactctttgacagaaaatttcccagcttagatcatgattatctggaaatcaactaag
cattatccttatctccatccttatcaccactgttgttgtcatggataccatttataaaacaccttctctgtgccaggcagtactgtgtgcattatcttat
gtaatcttcacaacaactctatgaggtaggtactatttctccattttagaaactggaaaccagggcacagagaggttatttaccagaggcctctcaactg
gaaaacgtcagagcagggatgtgaaccctgttcactctagagctgttgttctaatgaccatgcctactttttacaaccagagtcagttAAACAAAGCTAA
AGCCGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAA
AACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAAGCTAAagccaaaaataaatctgtagcttcctaaaggcaactcaagataattactggtcttctcttacatgatca
ccttatttattcttagtaaatcttaaatggttttataattccttgttttaaagaaacttaaaaggatcaactcgtctaaccttctaacaaagacaaggct
gtgttgctgtgcctgattcaaactgcccttcttgcccaaacagctctgtacgctttttaaagagttttataagctgttggaaatctatgcaattatttca
gactatttaaaatatgtgttgtctatcttatgctgtcttcatttacttatctaaataggaaaaaagtatcagaatgctttctacatgaacaggaagacta
accaacgttgaatggcagc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Otieno AC, Carter AB, Hedges DJ, Walker JA, Ray DA, Garber RK, Anders BA,Stoilova N, Laborde ME, Fowlkes JD, Huang CH, Perodeau B, Batzer MA. Analysis of the human Alu Ya-lineage. J Mol Biol. 2004 Sep 3;342(1):109-18. PMID:15313610.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 465 135 NA intron:STK38L:NM:015000:1/14
0 chr13 18374811 18375098 1001114 0 - pAlu13-18406708; RIP_Alu_chr13_018_02 NA NA SINE Alu Ya5a2 ttgtattaaccccttgcctgatgcatagtttgcaaatactttcttccgttctctggattgtttcttcattctattgatggctttctctactttgcagaag
cgtttaagtttaatgcaattgcattttgtctatttttgctttttgttgcttgtgtttttgatgtgtatttgaaaatcccttgtcctaaccaatttcatga
ggcattttgctgttttcttctctagtagtttcatagtttcatgtcctacatttaaatctttattttcagtagatggtaagataacagcctcgatgtattc
ttgtacatgtgggtgttgggttttcctagcacagtttattgaagagattgtccttcccgaatgtgtgtttttggtgcctttgttaaAAGAGTTGACTGTA
CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT
TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTGACTG
TAaaagcttgaatttatttctgagttctctattctgtttcatttgtctatgtctgtctgtcattcgtctatgtatctctgtctgtctctctctgtctgtc
ccctacctattttttttctttggccactaccatgctgttttggttactagatttgtggtatattttgaaatcaggtagtgtgatgcctccagcttttttc
tttttattcaagattcttttgtctatctgaggtattttgcatttccatgtgaattttaggattttttttttttttttttttttttttttgagacggagtc
tcgttctgtcgcccaggctggagtgcattggcgcgatctcggctcactgaaagcactgcttcctgagttcaggcgattctcctgcctc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 59070501 59070824 1001115 0 + pAlu13-59109036; RIP_Alu_chr13_059_01 NA NA SINE Alu Yb7 gacttccatctcatcagaagtctataacaaagtgtgcccctttactgctgggatggtgtgagagaagagcgagtgtgcagccagagcttccaccaacaac
cggtggtaactagagctccctctaccacccatggtgtcagtgaaggccacatggggagcctgacctcccagccctgcccagcagtaatgaggtaccctcc
cccagggtattaacggaacttggacatctgccccaacctgacattaactgagtggcaccaccatcatggtgtcaaaagatatctgctaaaacacaagatt
taaataaaattcagagtcccatgatgcttaaaatgtccaggaaaaatttgaaaatcatacaaagagcttaacttgaatgaattaatgaattAAGATCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAATAAA
AAATAAAAAAAACAAAACAAAAAAAAGATCATCaacactcctcccacataagtggtagagatggtgacagtatctgacaaaaattccaaagtagccatga
gaaaaaatgtttctatgaacatggtttaaacaaagggaaaaaaaagtttcagctaagaaaaagaagatataaaaaaagaacaaaatggaaattttaggac
taaaaatacagtagctgaaataaaaagctcagttggtgggctcaacagcacagtagagatgacagtcagtgaactgtaagagcaatagaaattgcccaat
cagaacaatagatagaaaaaataaactgaaaagataaagagagccttaggggtttatcagactataattaaaaatttaacatttatatattagtccgttt
tcacactactgataaagacacatc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 62554195 62554511 1001116 0 + pAlu13-62592730; RIP_Alu_chr13_062_01 NA NA SINE Alu Y aacaaaactgtcagccaagaatcctgtatgtgtcaaaatgaccatttaaaagtacgggagaaactaagtcagtttcagataaatacaagctgagaaagat
cattaccactagctttgccctgcaagaaatgctacaaggaatattgcaggttaaaatggaaggacaatagacaataactcaaatctgtgtgaagaaataa
atattgcagtaaaagtaaatgcatgagcaattataaaagctggtattattgtaacagatttgcaatcatattttgttttctacataatttaagaaactaa
tgatttttaaaaatctttagctaaaaatattaaacaattactaggttatggttttggacatgatgaatgaagatggaattttgtgacatcAAGAACTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAACTAAAatgattggggacagtgctgtaaagttttgcatgtcatcaaagtttgagtattataactgtaggatgctgatta
taatccccatggtcaccaaagaaagagtatagaatttaaaaaaaggaaatgagaaataaaatatttcagtacaaaacaagaactatacacaaaagaagac
agcaatacagaaaattaggaacaaaaaagctacaagtcatatagaaaacaaatagcaaaatgatagaagtatgtccctttgtcaaaattactttagatat
aaaaggtttaaactttccaatcaaaatgcagagattggcagaataggtaagaaacaataatccaactacatgctgtctaccagctactcacttcagatca
aaagtcaaaaataagtt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 80645256 80645565 1001117 0 - pAlu13-80683790; RIP_Alu_chr13_080_01 NA NA SINE Alu Ya5 aaaaatgatggaagagtgtgattaatgataaatgaacttctattatctgccagttactttatatatgcaccagagtcaatgcttaacacaactgctggaa
gtaagaactgctaaatttgttttcctgtgatgaaatggaaattcataaggattataatatttcattgaattgaaaaccaatcctattcattgaaagacac
gtatcaccttactgccaggagaaacagaaaatgctgccaaacatgactgtaagacttatctgtagactggtactgactcaaaaatgttattctggtagga
tttaggtgggtaaatgataccggtaggatgggttgggtggcccatggagtaatgccaggtagtaaagcacctgtttaaggcaAAGAAGTTGGTGAGCTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAGTTGGTGAGCTGAatctattcccaggcctctctgactccaaagccctgattcttacattgaacctcacggcctcagctatcttca
caaaacaggatgcatttgacattttcctatatgagaactcatcttttccttgatggcaccagcagtctttgtaaccttcatgtggaggaaatcaaagtgc
atggcagtgtattaatcagaaaaatggattgtgcttgcctcctcctgccaatcacttgacaaggaaaaacagatagcaaagattaaatcacagcttgctc
aaatgctccacacttgaaataaatacatttcagctttcacgaaagtccattatgcactgtttggctttgattagcagggggcatttcataaaacatgaaa
gaaaggtaca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 89958054 89958290 1001118 0 + pAlu13-89996590; RIP_Alu_chr13_089_03 NA NA SINE Alu Yb7 attaaacctaatgcaaccactgaaatcatgtcatagcattataaatcataagcaacttaagagaaaatgaaatcataaaactatgtaagtactctaaaat
aaaaaagaaaggaaaaagagataaataggatatataaaaaagcaaacaggaatataatagagctaaactttattatagcaattatcacataaaatgtaaa
tagtttacacactcaaaagagattttgaaaagatccgactatatgctgtcttttgaataaagaaacaaatcagttaaaagtgaataaatgaaaaatatat
catgctaaccaaaaaaagctgatgagtacattacagtaagacaaagtagattttaaaacaaaaaactccaatattatcaaaatgataaAAGGGTTACTTT
AAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGC
TACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGA
CAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGGGTTACTTTatcataagagcaacacatggttacaatcatgcttacatgtaaacaaatata
tttgcacatttaaaataaatgaaccagccactaataaaactgcaatgagatatagataatgccataatttcagtttgagatttcaaaggagctcacaata
attgattgaacaagtatataaagaccagtaagaatacaccgaccaacttgacgacagtagtatctatagaagcctgcatccaacaaaaatagaaaacaca
tactatttaggtatacatggagtacttttgggcatagaagttaatctgagccataaaacaaatatcaatgaatttaaaaatatcttttctactaataatg
gcatcaataacaacctaccaaatcacaaaatatctag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 112838951 112839264 1001119 0 - pAlu13-112877490; RIP_Alu_chr13_112_01 NA NA SINE Alu Ya5 caacccttggcaaaccctgtcccaccactaatctattctttatcacaatgataacaacctattgagcatgtcatgtaaatgaaagtgtttattataggac
cttgtgaaactagcttttcattcaatacaaagcctttgaaattcatgcaagttgtatcaatactttcttacttgttgttgctgacaactgttatattgta
tgggtacacccagcaaaagacatttatcttacttccagcttttggcaattaagaatagagttgctggccaggcgtggtgcctcacgcctataatcccagc
actttgggaggctgaggcgggtggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaAAGTACAAGAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGTACAAGAATTagcctgccatggtggcacacacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctg
agaggaggaggttgtagtgagccgagattgtgccattgcaccccagcctgggcaacgggaagactctgtctcaaaaaataaaaattaaaaaaaaaaaaaa
agactagagttgctatagacatttatgtacaggattttatgtggaaataagttttcatttctctagggtaaatgcccagaaatgggattgccgagtcctg
tggtaaccttatataactttataagaaactgtcaaattccttttcaaagtggccgtgccattttgcattcccacgagcagtgtatcaaagttctgctttc
tccgtgtcttaacc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:F10:NM:000504:2/8
0 chr13 62421818 62422120 1001120 0 - pAlu13-62460348; RIP_Alu_chr13_062_02 NA NA SINE Alu Ya5 gagtttgtaggtatactgaacatcattttctgaattcttatgcaagaaagaataagctagagtttttgttctgtctccttaaaagtgggattcccaggaa
ataagcctaattaatgggctttaattatacatcacgtattaaataggagagtggaagaaaatttgattgacaaaacccattgattgtgggaggggtggat
gtttaaaaaaatggaaaaccaatgctgaattgcaaaagttttgttaatgtataattcattttgaaatctcaacttcatttacatttttagtaacactacc
aaaaaattaatcaactcattatcttcatttcattttaagggaaaatggaaaacaactgccatccttatattataatcttcaatttatAAAAATCTTCCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAATCTTCCAAattttcgataaattcttgaaatttcaaatattttccccataacaacctttgtacctgatcaagaacagtgatatattatatatg
gacaataatattattacccatttatttagtatgtagatcaggggtatatttctatgggaaaggaatagacaattaaatattgaattttatgtgtcagaaa
tgctattgtatttaataattaaaaacatgctttgagacacgcattaaaattatcgatttattaataagatagaaacaattcaaagagattagtttcttta
attactcacaataagaaggaagaatatgaatgaaatataaaattatttcctatacactcctctattttattctgttagattatttagaaaatagaaacag
gaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 63275104 63275400 1001121 0 - pAlu13-63313637; RIP_Alu_chr13_063_02 NA NA SINE Alu Sg actgcttttcttctttttctgtaaataaatagctgtaccataccactggagcctagtgtacatgtcttcggttctcagtgaccccaaatcatgcaggtct
cttccctgggtggcattcatctgcttgttaaccttggccgcactcattttatattctgtcctgcagcacagcttgaccgccccgtgaacagtgaaacaca
gctatttctaaaaagtattttggtaaactctcttggaaggaacaaaactagtgtttgttggtcttctatattaccatgtgaaactgagagtgttaaggca
caactactgcaggtagttgctaagtgatgtcagggaaacttgtgcacctcttaaaaatgtgaacaactcaaagttgtgctgtattcaAAGTTTAAAATCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAAGAGTTCGAGACAAGCCTGACCAACATAG
TGAAACCCCGTCTCTACTAAAAGTACAAAAATTATCTGGGCATAGCGGCGCGCGCCTGTAATCCCAGCTACTTGGGAGGCTGGGGCAGGAGAATCGCTTG
AACCCGGGAGGCAGAGATTGCAGTGAGCCGAGATTGCACCACTGCATTCCAGCCTGGGCGAGAGGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
TTTAAAATCAagcatacagcttcaaatattttgacacatgcttttaaacaagagtttgtccaagtaggctatacatcagaaaaatctagaggctcagaac
ataccttgcaaatagaattgtaaaaaatgtagcctaagtaaaagcagataaaatcttctgattgaaaaaattactgcatagcattgggcaattttttttt
ttttgagacagagatctgtactgagaaactattatatacaggaactgaagtcatcatttggggtacactagagtaaatagaaaacaaaaataggaaaaag
ataaaagaaaaaacaaaatatatgaaggtctccatctttgtgtgttttatattctggataggagagatggattataaccaaaaaagtacaatcagtt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 80539709 80539710 1001122 0 + pAlu13-69295551; RIP_Alu_chr13_080_02 NA NA SINE Alu Ya5 attgtgatcttagggtgtcaattttggatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacccacacactgctttgaatgtgt
cccagagattctggtgtgttgtgtctttgttctcataggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattgaggag
caggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttctagtttgattgcactgtggtgtgagagacagttcgttata
atttctattcttttacatttgatgaggagtgctttacttccaactatgtggtctattttggaataggtgtggtgtggtgctgaaaaaAATGTATATTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAATGTATATTCTGttgatttggggtggagagttctgtagatgtctattaggtccgcttggtgcagagctgagttcaattcctgggtatccttg
ttaactttctgtctcgttgatctgtctaatattgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagtctctttgtaggtcactaa
ggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttatcattatgtaatg
gccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccatttgcttggtag
atctttc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 95431438 95431741 1001123 0 + pAlu13-95469973; RIP_Alu_chr13_095_01 NA NA SINE Alu Yh9 ggtcaggagttcgtgaccagcctggccaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgggtgtggtggcgtgtacctgtaatccca
gctacccaaggaggctgaggcaggagaattgctggaacccgggaggcagaggctgcagtgagccaagatcatgccactgcactccagcctgggtgacaga
gcaagactccatctcaaagattcttcctgtttccttttatatttgtgggcaggatgtttcttttatttatgtatttattttaaactaaatgtttcttatc
tcctctactcgaaggtcatatcctctttatctccttaagtaaagccaggagctctgcagtacccccaagtgagaaaaattatgcttAAGACACTTTTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGACACTTTTGTTttagtttagtcccagacccagaggaaaatccttcaaatttcttaagtaaatccttaaaaagtgtaatttacaccagagcaat
tgacctggtgtaaataaactgcagcatgagaagaagaagaaaaaaagaccattattacttcttttttcggtgaacattttgtttacatgttttgcaggaa
atgtacttttcggtttgtatggatgagatgctgtaacagaaacacatttccagggctttctcgtgtccaatccgtgtgcaatgcaattgcaatgaatagt
ccaagattttcttaccttctcatcacaaccaccctcttccccaaggttggaacttcagtttctttaattacttctcccacatctcatgagctagtgggta
acat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:UGCGL2:NM:020121:10/39
0 chr13 100040079 100040382 1001124 0 - pAlu13-100078613; RIP_Alu_chr13_100_02 NA NA SINE Alu Ya3 ggagttcaagaccaccctgggcaacatggtgaaatcctgtctctaccaaaaaatacaagaaactagccgggcgtgatggtgggtgcctgaggtcccagct
actcagaaggctgaggtgggaggatcactcgagcctgggaaacaggggttgcaatgagccaataacatgctactgtactccaacctaggtgacagagtga
gaacccatctcaaaacaaacaaaaaattcgtctagtctgcgtcatctttaattttcctttatcagaagaattatttatctatttgtctcactttcctttg
ctgacatgattttcccccctcaaaaaagagatgaaagtggaatcattctttcgcttcaaaaagttaagaattactgctgtctttaaaAATATTAATATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAATGG
TGAAACCCCGTCTCTACTAAACATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAACCAGATCCCGCCACTGCACTCCAGCCTAGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAATATTAATATGAGgctagacaaggttttttaatacatttcaatttaattatgaagtgtccaagacaagaaaaaactgtgaaaaccaacgacttat
gtacctgatggtttagatttcttttggaattgtacatctgttcaaaatacaattacatctgcattgttggaaacgtttggataaaaaccagtttatataa
aggtttcaatcagtccacatccatgagaaagtagaaagggcaggaaatgattaagggggattattgctaatctgataaacacagatttgtgtctttcgga
gagacagaagtgtcactctctccatagctgtaccattcctaccacctggcccccaagtggcattgctttaacccattgtctctagggaaaatgttctctt
tcgat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 98476282 98476352 1001125 0 + pAlu13-98514816; RIP_Alu_chr13_098_01 NA NA SINE Alu Yb9 atggaaaatagtctggctgttcttcagatggttaaacccaggttaccgtatgatccagcaattccactcctagatgcccaacgttgaaaatatatgttcc
cacaaaaacttatacatgaatgctcttagcagcactgttcataataaacaaaaattggaaacaacacaaatgtccatcaattgataaatggataaacaac
tacagaatacaatgaaatattatgtaccaacttttaaaaaatgaagtatgatccatgccacagcatgggtgactcttaaaaccatgctaagtgaaagaag
ccccgcataaggatcacatagtgcatgaatccactgctatgaaatgtccagaacaggcaaatatctagagacagaaagcagattAACAGTTCCCTAGGGC
GCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACAGTTCCCTAGGGCtagggggttgggt
ggagcagagttccggggtgatggctaaggggtccagtgttcttttggaaagtaataaagatgttctaaaattgactatggtgatggatgcacaactctga
atatactgaaaaccactgaacattttaaatggatgaatcatttcatgtatgaatcatatcctgataaaggtgtttctttaaaaacaagacagcacatatc
agagggtacatcaatccaaagttgaatttctcttgaaagtaccctaatttcaataccgttatctttccaaaacatatcactaccctaacacagcaaatgc
ccaaaagcactcctggcactgcatatgcagaagagaggacagctaagaatggtaagatgatttcttcatca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DOCK9:NM:015296:1/56
0 chr14 30332752 30333065 1001126 0 - pAlu14-29252942; RIP_Alu_chr14_030_01 NA NA SINE Alu Ya5 ggacaggctgactctcttgtttggggctaatgaagctggtgactttaagttgaagccagtgctcatttaccattctgagaattctagggaccttaagaat
tgtactaaatctattctgcatatgctttataaatggaacaacaatccctggttgacaacatacttgtttttagcatggtttactgaatattttaagcctg
ctgttaagatctactgctcagaaaaatatttcaaaatatactgctcattgacaatgcacctatcacccaagagttccgatggagatgtacaagaagatta
atgttattttcacgtctgctagcacaatatccgttcttcagccatggatcaaggagtaagttcacctttcaagtcttattgtttAAGAAATACATTTTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATACATTTTGTaaggctttagatgtcataggtagtggttgttctgatggatctgggcaaagtaaactgaaaaacttctggg
aaagatttgccattgtagatgacattaagaccattaatgattcatgggagaaggttaaaatatcaacatgaacagaagtttggaagaagttggtttcaac
tcttatggatgactctcagggattcaagacttcagtggaggaagtaactgtagatgtggtggaaatagcaagagaattagaattagaagtggagcctgaa
gatggagctgacttgctgcaatctcatgatcaaacttgaagggttaaagagttgctttttatagatgagcaaagacagtggtgtcttgagatggaatcta
ctcctggtaaagat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 33359800 33360125 1001127 0 + pAlu14-32279987; RIP_Alu_chr14_033_01 NA NA SINE Alu Yb10 agaagccactcattatcatgagaaatcactgtgaaaagactcagaaatatttaaaatctgtgtattttctgcattctctgtctccaggagcagaacttca
ctggaaccagaaaactgctgcgaggacacagaatcagcaaaaggggagtcagatgaagctcctgttttcacatcaggtgcacaacaggaacactcttgcc
tttgggactggaatttctggaaatgtgttggtgaattctcccactccaagggacagagctcgtatgggattttcaaaacaggggtcttgggtgattctcc
ttttttctatgcttcccacagctcactaagccctctgctttggatgtttcatttctttaaatatgttaatgcaattatacatgcattGAAAATTACAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAAT
GGCGTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTACAGTCttgcaaggctggacaccagtcttcatctgcatgacaaaactttggtctccacaacctccta
tcttaacccagacattgctttccattgataataactctttcaaccaattggcaatcagaacatttttaaatctacctagaacctagaaccccactcctgc
ctcttcgtgtcccacccttctggaccaaacctgtgtatattttcatggtatttaattgaagcctcatgtctccctgaaatgtataaaatcaagctttgtc
caaaccaccctacgtacatgttctcaggggctcctgagggccgtgtcatgggccatggtcactcatatttggctcaggataaatttcttcaagtatttta
cgtagtttgattcttttcatcaacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 45412163 45412476 1001128 0 + pAlu14-44332350; RIP_Alu_chr14_045_01 NA NA SINE Alu Yb3a1 tctcttgaagaaactcaagagtttccttattttctgtgctttgaggagggcccaagtcctctaagatgggtccctgctttgtttcaaaatgagtatgaag
aatgcgaggtatgaaaaactcataaggcccagaaaaatatgagaacaaatcctcagtcacccctcccatgctagcaccagtgtccctgggcaattgttta
aaggtattttatttcttccttgtagttttcaggctagctgataaattacctaaaatgcaattataagttgcacaaggtgaccctcactcattatctttat
gttcctgaaatttttgatacaaaaataatgtatagccaatcaatagcttatgatcaacttaagaactgctccttctttttttctttaaaaagCCACTTGT
GGCCAGGCACAGTGGGTCACACCTGTAATCCCAGGACTTTCGGAGGCCAAGGCGGGTGGATCACAAGGTCAGGAGATAGAGATCATCCTGGCTAACACAG
TGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGGGGGCATCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCAGGAGGTGGAGCTGGCAGTGAGCCAAGATTGCGCCACTGCACTCTAGCCTGGGCGACAGAGTGAGACTCCTTCTTAAAAAAAACAAAAACAAAA
ACAAAAACAAAAAACCACTTGTaactgctgttaattagaggcctggcaattcaggccaacttaaatctgtgtctccttggttgcagtcctcaaatttggt
ccaaataaactctctatttatgttaattttgcttcagtttcttcctttatgttgacaaagtccaaagactaaatctcagttttatagtcttacaacttca
gaagtctgctgttgtgtcttgttttctaactgctttatatgaattctccagtgcaataatacattttttttttttttttgagatggagtcttgctctgtc
acccaggctggagtgcagtggcgcgatctcggctcactgcaatctctgcctcccgggttcacgtcattctcctgcctcagcctcctgagtagctgggact
acaggtgcctccca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 45647688 45647993 1001129 0 + pAlu14-44567875; RIP_Alu_chr14_045_02 NA NA SINE Alu Ya5 atttctgagcctgtggaggtacagggggcattcctgggcctccaagagtgtggagatgcctgggagtggccgcggcttggacaggtgcagccatacccag
gagggtggggctcctggctgctcccagcccctaagagcacagatagcctaggatagcctaaggagtgtgaagctcccaccctgccaactcagaaggggtc
agggcttctgcctgttctactgctcctgcaagctctgtggagcacagagccctggccaagccttccccactgaagctagtgtcatggcaatggccactct
ggatgggccacagctgccattagtattgcagatgattgagataaaaaaatcacctaacaagtggaagaagagcaaaatggctgaatAAAAGCCTCCAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGCCTCCAATTGgttcccccagcaggaacatgaaactgaataactattcacataagaaagcacctttgtaagaaccaaaaatcaggtgagc
aattacggaatctggttttaatatcatgtcaaagaaaaaggcactgaagagggtaagacagtcttgggttgctgacacaactcctaccctatgctttccc
tgtggctgcctggtggagagagaatctgtgtgtactgaagagcacaatgattgtgggaatttgcattgtaactgcatgctgccatgttacagcagaaagc
agcacaaggaataagagggatgattcctctctgttctgcatgctcttattgcttattggtctgtatgatccctccagtcccatagaaggagcatgtagac
cagaggg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 56442893 56443175 1001130 0 + pAlu14-55363036; RIP_Alu_chr14_056_02 NA NA SINE Alu Y ccccacgggagaaaagttaatggatgatgaggaaggagagatgttggactactttgagaagcttgattatgaaggagagggacagagcagtggcttaagg
actgcaggatgtgaggacagttttgtttaggtctgagtttggaaataattgaagatagggctatattcagatgacccagaatggaagatggaggttctga
ctgctgactgctggcgtttgtgtgtgtgtgtgttctaaagtagaagatgaagtctgggggcttcaaggataaatgattcagaattgttgttgagagactc
agaagaggtatgtgactgagatggagaaaaaggattataattGAAAGGCTATGTGAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGA
GGCCGAGGTGGGCAAATCATGAGGTCAGGAGATCAAGAACATCCTGGCTAACACAGTGAAATCCCATCTCTACTAAAGATACAAAAAAAAAAAAAATAGC
CGGTTGTGATGGTGGGCACCTGTAGTCCCAGCTACTTGGAATGCTGAGGCCAGAGAATGATGTGAACCCAGGAGGCGGAGCTTGCAGTGAACCGAGATTG
CGCCACTGTACTCCAGCTGGGGCGACAGAGCGAGACTCTGTCTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAAAAGAAAGGCTATGTGcttg
gaccatgcagacaaaagccacccttgataaaagcaatgggcttttcctttaggggaattcttcattcacgtatgtatttatcattcaacaaatatttatg
aatgcttgccatgtgccaggcaccattataggtctccaccagcagtggtccccaaccttttcgacatcaggggccagtttcacagaagataatttttcca
tggactagatggggggatggtttggggatgattccagcacattacatttattatgtactttatttctgttactattacgttgtaatatataattaaataa
ttatacaactcaccataatgtagaatcagggggagccc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 73736591 73736897 1001131 0 + pAlu14-72656778; RIP_Alu_chr14_073_01 NA NA SINE Alu Sc taatctgttacagcttcaagcaagaaagtcagtatagcctgaaagacaagagaaacgggatggtttataggagttcccatttggttgaaagctagaagcc
ctaattgaccttaaagtaacatgctatgggatggtgggattgtcccctctgacagcacatatgaaatagttcatctatataatagaaacgcacacacacg
aaaaagaatcttctgacttaaatacaactttcatggagttcttcaccacttatctgtctctgttaaaatctgaaaatctagcccatggctaaaatctatt
atatgtgttctccatatttcttgtataagccagtccccagcatctgatgttttgagaagtgcatggagtttcctaaactttgcacaaAAGAATATCCTGG
GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATAGGTCAAAAGATCGAGACCATCCTGGCCAATATGGT
GAAACCCTGTCTCTACTAAAATACAAAAATTAGCTGGGCATGATGGTGCATGCCTATAGTCCCAGCTACTTGGGGGCCTGAGGCACGAGAATCGCTTGAA
TTCGGGAGGTGGAGGTTGCAGTGAGCCGAAATTATGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATATCCtggcaatagtctgatggtgtttggacacaagaaaagttatggttttgagtcgtgagtgtttgctagggcatggcactcttcag
tttaacagctgatccattaaaccttttctgacatttgtgccttgttctcatgctagaattaatgctggatttttctctcatttgaccatcaatgtagttt
tacttattgaaaggaaaaaagacttaacacaagataggaaagatgagtatgagaagtaaaacattctgctggggtgctacatagaaggttaggttgtagg
ggctttgattttaatttaaacttattatcgattgatatttctgtatctcactaaatgcggttgaagagtgtgtgtgtgtgtgtgcgcgcgcgcatgtggc
caaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA downstream:LIN52:NM:001024674
0 chr14 34471165 34471474 1001132 0 + pAlu14-33391352; RIP_Alu_chr14_034_03 NA NA SINE Alu Y agggttaatcctttcctgttttaatgtgtatgatacgaagtgtatctgcctcaatttttatttatttattttttgagacagagtcttgctctgtcgtcca
ggctggaatgcagtggtgcaatctcggctcactgcaatctccgcccttggttcaagtgattctcctgcctcagcctcctgagtagcagggattacaggtg
tgtgccaccatgccaggctaatttttgtatttttagtagagatagggttttgtcatgttggccaggctcgtctcaaactcctgacctcaggtgatccgcc
caccttggcctcccaaagtgctgggattataggggtgagctaccatgcctggccctgtctcaaattttagtgcagtgcaatctatcactAAGAAATTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCCAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAATTTCAaagctgttatttaagatgttaattatataatatacaaatatcacggttgtgtggtttaacctgttaagacatgcttaga
aaagagaacgtgagtatactgactttattacaagcctatattggaagatatatggtaatacataggtatgtataactccctgataacaataggttatgca
ttatttaaaaacataatgtcaaacagcattacagttggtaatttatttaaagactacaagcttgcttgtctgttcactactgcatttctatcctgaacat
ttctggatatattactatatatcaggtttatatacttttactataggtatataaatatttgctgaatgaataaaataggaagataattttaaaaggtaaa
aaatggcatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 53633817 53634135 1001133 0 + pAlu14-52554004; RIP_Alu_chr14_053_01 NA NA SINE Alu Yc2 aatccaaaaatgaaattaaaaaacaattccatttgatagcatcaaaaagaataaaatatttaggaataaatttaacaaaagaagtgtaaaacttatactc
taaaatctacaagtcattgttaaaataaagaagatgtaaataaataaaaacacgctatctttatggataagaagacttagtatttttaagatgccaatac
tctccaaattaatctgtacattcaacacaatcctcatcagaattccaagtggtttctttgtggaaattgaccagctgatactaaaattcacgtggaattg
caagggatccagaatagccaaaacaatcttgaaaaagatgagcaaagttgaaggactcacaattatcaatttcaaaacttacttcAAAACAACAGTAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACAAACAAACAAAAAAAAAAACAACAGTAATCaggacagtgtggtattggcataaggacagacatagatcaatggaatagattgagagtcctaagaca
aatccatgtgtctatggtcaactaatttttgacaagggcaccaagaccatttcatggagaaagaatagtctttcagcaaatgatgctgggtatcttagta
cattttgggctgctataacacaatgccacagatagagtattttataaagaacagaaattcatttctcacagttctggaggctgagaagttcaagatcaag
ttgccagcaggtttggttgtctgacaagggtccagtctctgcttctaagatgaagccttgaacaatgtgtcctccaacaaggaagaatgctgtgttctca
catagcacaaagtggaagg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 49188638 49188777 1001134 0 + pAlu14-48108825; RIP_Alu_chr14_049_02 NA NA SINE Alu Yj aggatgatcagaacaggccgggctcataatttagtgtgacttgagcacaggcttgaagcggaagagggacttagtcaagcagatacccagaggaagcgca
ctgcaggcaaagggaacagatggagcccaggccctcagactggagctcgcctggcatccttgaggaacagaagggaggctagtgtggctggagtaaatgg
ggaggagaggaaatcagagaggtaacggagccagataacacagggccttgattaccactgcaaggatacggctgtcactaaatcacgaggggtccctttt
tccaatgagggtccctttttccaggatcgggaaggtggatgggatatgccttatgctttacaggatcactttcacactgcgttAAGAATAGAATACGGAG
AGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGAATACGGAGgggaaggagtaaaagctggagaccaattaggaggctattgtaa
taatccaggccgagaagatggcagagcagggctcctcaacctccaggccatggactggtaccagtccatggtctgttaggaactggaccacacagcagga
ggtgagcagcaggctgcaagcaagcaaagcttcatctgtatttacagccactccccatcggttgtattacatcctgacctctgcctcctgtcagatcagc
aggggcattagattctcacaggagcacgaatcctgttgtgaactgtacacgtgagtgatctaggctgcacactcgttataagaatctaatgtctgatgat
ctgtcactgtctcccatcatccccagatgggaccgtctgg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:POLE2:NM:002692:15/19
0 chr15 20978288 20978604 1001135 0 + pAlu15-20845151; RIP_Alu_chr15_020_01 NA NA SINE Alu Yc1 tttctgttccacgcatgttgcccacattcactgcgtaaaaggcaaagggaactgtgagtacccacaaagaacctgatattgacggcacatacatttcttc
attaggaagaataaatttagactgtaacaatttaaaaaaccagaaaatacaactgtacattttagttcttattaaaatccaagaggtttaacttatttgc
tccttgtttaggtaattagtgtctaaaacatttcaaagataacatatatagtggctacgatttctagtactttttaaaaattcaagcccagtctcttcta
attaaatgtataaatgatttatctctgtctttcttaaaaagaaccaagagccccaattaaaaagtaaaacttaaatttcctcttaaaaAATTGTTACGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTGTTACGTCaaaattatctaataaaccatagttcagaaaataatttctgaattaagaaaatatgaagaataaaaccaaca
gtttatgtgctgaatttcacatttttattttttattatttttaaaattttgttttaagttctagggtacatgtgcaggagtgttacgtagggaaacgtgt
gccatggtggtttggtccacctatcaactcatcacctcagtgttaagcccagcacgcattagctatttttcctgatgctcctcccccacccgccctgaca
ggccccagtatgtgttgtttcccttcctgtgtccatgtgttctcactgaacctcacatttttaaatacagcatatgccaggtgtcatttcagtacccata
attatacatagtatatg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 22390426 22390733 1001136 0 - pAlu15-22257287; RIP_Alu_chr15_022_01 NA NA SINE Alu Yb7 ggccacacagcagttcagttttcttccagacagcccttcccattacaggcccagtggcctaggaagacagaaggacttctggggacaggctggctgggcc
actgtcctgtaccacgtcagggtgctaattccagctgcattggctcaaatgcccaaggtgatctggctctgaaaggtataaggcccagaccttagaggtg
atcatgtggtgataattatataggcttacagaaatgaagaactgtggagtcttggcagcctccacaaatttcaaaggatttcttcaaaagcctggtagtc
tagagacttgtgataagggcagatctactgaagagagccctctatagagggataccaaacacaaatgtggaactggaactgctgcaAAGAGTTCACCAGG
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAGAGTTCACCAGGGgcaatgccaagcgaagccgcggaagtgaggtccctgcagagagtcctcatatgagtaatgcctagtgaagcagagga
agtggtaccactgccagaaccccagaagtgtcgagtctgcatgcaatgcctgcctgggaaaaacctgaggtagctgactgcaaccagtacagcacccatg
gggactctaccaagcaaagtcatagaataacactgcctgatgttttgtgagtccaaccctcaccccagtgtgttcagaagtcagatacagagaataaaat
atattccaggtttaacatataatgttgaccctgctggattttgaacttgcttgggacctgttacattttaaattttgtctatttctctcttttggaacat
gtacattat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 32796326 32796644 1001137 0 - pAlu15-32588079; RIP_Alu_chr15_032_03 NA NA SINE Alu Ya4b tttcagccttcctcatctcctttctgggcctccttgtctctcattactcacttttcctcccaggtcatgctatccacggccccatttcaaatacccagag
ctctcttatggaactggggctgaaagcaagctggagaagtcatgaccagtaagatcttaggggtcagttgtagaggggaggtgccctttgaaaggttata
tatgttaaaagagaagcctaaaaaggtggaacttagaggaactatatttttaaggctggaattgcaggtgtcttggcaggatggggatggaggaagaggg
atatgattgttttggaaggagaggtatcttctttccagcgccctcaaaaacacactctgtgtgtcatcttctattcttctccttAGAAAGCCACTGCTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGCCACTGCTTGGgtcattcaaatgaaaggcactttgagtgttttaaaaaactaggtttcattttatattgcttgat
tctttctcagaacttgtgcctaggcttgaaaacatgtttatcggtaaacattagacatacttttagcaacaagcagtctggtaaacctttccagggtttc
tggcagatctgctcagggcagcccatttctgctcttttttttttttttttctttttttaactctttcttaaaacaattgtcctccaggaaacctacctgg
tcctgccaatcacattactgcatctcctgggcaatctggatcaaatagttaaacactccacgttaaagggaaaatgcacgcaagtacactcagcacaatg
acctgcacatgagaacttct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 43836225 43836521 1001138 0 - pAlu15-43627967; RIP_Alu_chr15_043_02 NA NA SINE Alu Ya1 agaatggaaccaagttagaaaacactcttcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaacatagag
aacaccacaaagatactcctcgagaagagcaaccccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccaga
gagaaaggtcgggttacccacaaagggaagcccagcagactaacagcagatctctcgggagaaaccctacaagccagaagagagtgggggccaatattca
acattcttaaagaaaagaatcttcaacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttAAAGACAAACAAAT
ACCGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCACAAGGTCAGGAGATCGAGACCATCATGGCTAACA
CAGTGAAACCCCATCTCTACTAAAAATATAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGG
CGTGAACCCGGGAGGCGTAGCTTGCAGTGAGCCAAGATCCCACCACTGCACTCTAGCCGGGGTGACAGAACAAGACTCTGTCTCAAAAAAAAAAAAAAAA
GACAAGCAAATgctgagagatgttgtcaccaccaggcctgccttacaagagctctcaaagaaagcactaaacatggaaaggaacaaccggtaccagccat
tgcaaaaacatgccaaattgtaaagaccattgatgctatgaagaaaccacatcaattaataggcaaaataaccagctaacatcataatgacaggatcaaa
ttcaaacgtaacaatattaaccttaaatgtaaatgagctaaatgccccaattaagacacggactggcaaactggataaagagttaagatccatcagtgcg
ctgtattcaggagacccacctcacatgcagagacacacataggttcaaaacaaagggagggaggaagatctaccaagcaaatggaaagcaaaaaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 51969633 51969936 1001139 0 - pAlu15-51761375; RIP_Alu_chr15_051_01 NA NA SINE Alu Ya1 aaaaacccatcaaaaaatcaatgaatccaggagctggtttttttaaaaggtcaaaaaatagataggccactagccagactaacaaagaagaaaagagaga
agaatcaaacagacacaataaaaaatgataaaagggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctacgc
aaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcccaagtctaaaccaggaagaagtcaaatccctgaatagaccaata
acaagttctgaaatcgaggcagtaattagtagtctaccaacccaaaaaagtccaggaccagatggattcacagccaaattctaccagaggtacAAAGAGG
AACTGGTAGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCT
AACACAGTGAAATCCCACCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGATGGCAGGTGCATGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGA
ATGGTGTGAACCCAGAAGGCGGAGCTTGCAGTGAGCCAAGATCATACCACTGCACTCAAGCCTGGGTGACGCAGTGAGAATCCGTCTCAAAAAGAAAAAA
AAAAAAAGAGGcgctggtaccattccttctgaaactattccaaacactagaaaaagagagaatcctccctaactcattttatgaagtcagcatcatcctg
ataccaaaacctggcagagacacaacaaaaaaagaaaatttcagatcaatatccctgatgaacatcgatgtaaaaatcctcaataaaatactggcaaatc
gaatctatcagcacattaaaaagcttatccaccacgatcaagttggcttcatccctgggacacaaggctggttcaacatatgcaaatcaataaacataca
ccatcatataaacagaaccaatgacaaaaaccacgtgattatctcaatagatgcagaaaaggcctttgacaaaattcaacacccttcatgctaaaaactc
tcaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 57500191 57500509 1001140 0 - pAlu15-57291945; RIP_Alu_chr15_057_01 NA NA SINE Alu Ye5 tgcccattttcctccagaaactaaggtcctccccaggttgtcctgcctttaaagcagagccatcatggacttaaggacctttctgacctacagtgatggg
gtccacatctactcccacacaagaatctttgttcaagctgtcagggatctgcctttccactgagctccaattctacctagaacattgcccgtcgaagtgt
gatctatgcacaagaacacgagcccctctactgttaggaatgcagagttcaagggtcccaacctgggtctacaggatcagaatctgcattttaacaagac
ctcctgctgattcgtatgcacatttaagtctgagaagtactggcctagagaacgtgaccccaccagaacacagtagagcacgttcttcAAGAGCCTTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAGCCTTCCTtggcttcgtcactggatgagtgatactgggggtaggaaccctgtcattaaaatcattgggattatacaa
taaatcttataaagcactgggaagaaatgtgataaaaatgaagaaacgaaaggaaaaattctctctaggctgacatttggtatgcaacaacatgcaactg
gtatttggtataaaatgtgtttgtttttccgttagactcagctgtcctaatttgaaagagcctccaaaaatatcagttgctatttagcttcccttagtta
agggttgtttaattttgttagacaatgaagctaattctcatcactgcaacaggaagaacaatgacatgaacccacaaaagatgtccccgcctacatatgg
ttacagtggcataagctgg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 64420879 64421187 1001141 0 + pAlu15-64212624; RIP_Alu_chr15_064_01 NA NA SINE Alu Ya5 taaaatttctaacatgtccttgatatattaatggtagcatataaaatttggcataaaatttaccatttcctagggtctgactattactcagcagctttgc
ctgccttctttccaaggccagttgtttatttctctcaattctttgttgttgctcttctgttaggcttctacttaactcagaagcaaacatctcactttca
gataagtttgtcagaaagggatctaattcagtagaagtgacatcatgttcattattctccgcaacttcatctgcaatagaaaagaaatagtacatctgtg
gtgttagactagttagagaagggcttctcattgaaaaagaatttaaagtggcaaggtgacagacctgaaaaaacaatttgtgaagtatAAGAATGTTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATGTTGTGaatacatgcttgattcaattaaataagaaatatttataaatcagtttaaagaggaatgctaagtcaaataaaaatacaa
tttaaaatatgcatgaaggccgggcgcggtggctcacgcctgtaatcccaacactttgggaagccgaggcgggtggatcatgaggtcaggagttcaagac
cagtctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtggcgcatgcctataatcccagctactcaggaggctga
ggcaggagaattgcttgaaccgggacccgggaggcggaggcagcagtgagcaagattgcgccactgcactccagcctgggctacagagcaagactgtctc
aaaaaaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TIPIN:NM:017858:6/8
0 chr15 25989730 25989731 1001142 0 + pAlu15-73350451; RIP_Alu_chr15_025_01 NA NA SINE Alu Y gcgcctctgcccggccgcccctactgggaagtgaggagcccctctgcccggccaccaccctgtctgggaggtgtacccaacagctcattgagaatgggcc
atgatgacaatggcagttttgtggaatagaaaagggggaaaggtggggaaaagattgagaaatcggatggctgctgtgtctgtgtagaaagaagtagaca
tgggagacttttcattttgttctgtactaagaaaaattcttctgccttgggatcctgttgatctatgaccttacccccaatcctgtgctctctgaaacat
gtgctgtgtccactcagggttaaatggattaagggcggtgcaagatgtgctttgttaaacagatgcttgaaggcagcatgctccttAAGAGTCATCACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATGACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAGATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAGTCATCACCAatccctaatctcaagtaatcagggacacaaacactgcggaaggccgcagggtcctctgcctaggaaaaccagagaccttt
gttcacttgtttatctgctgaccttccctccactattgtcccatgaccctgccaaatccccctctgtgagaaacacccaagaattatcaataaaaaaata
aattaaaaaaaaaaaaagaaaaacacctaggaatacagctaaccaaggagttgaaagatttctataagcactacaaaacattgctgaaagaaatcagagg
tgacgcaaataaatagaaaaacatttcatgctcatggactggaataatcaatatcataaaaatgtccatactgcccaaagcaatgtacagattcaatgct
attcct Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:OCA2:NM:000275:2/24
0 chr15 75697928 75698291 1001143 0 - pAlu15-75486694; RIP_Alu_chr15_075_01 NA NA SINE Alu Ya5 ctcactcatgcgcatgtttcctttcaaagaacattcacgggggtctgttctgtgtcacacttcactctgagctacagacatactctctgcccctgggtac
ctcactctctagcaggtgagacacacacacccatgactgaaccaggattacattacaggagagatgccaaatgctgaggctttggagcatatttccctct
ttgctcaaggtcactaggaagctctcacctttcgtcattaggcaggacttggtggcattctttcctgactggcttcccttttttagcttttatcttctta
tcatcttgtagcataatttttctgtcagttggttcaaatcactatgggaatgaggtgtgctatataccagtttcataaaatcactactatAAGAATAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAACAGgtgttggggacaagaggtgatatct
gactgagtaggtcaaggatggcctcctggaggaggtggcctttggggtggaaggttgcaaaggctgctggggcaggagtctgggacagttctccagaaca
agatggcttagaggtaggagtgtgcaggacaaagtggggaggcccaggtggctttgctcagggactggtgggaaaagaggtgggtgggcaggttgaggcc
cggtggtgcaagcttcctgtgtgccagattcgtgtctgtataagaggggcttaccagcacctcggggtggcccgtgtcctcactagcccccctcattccc
cagccttctctccagcagctccccccacccgccagcctggccctgagctggatgctaaaagtcct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LINGO1:NM:032808:1/2
0 chr15 89203117 89203420 1001144 0 + pAlu15-88989245; RIP_Alu_chr15_089_01 NA NA SINE Alu Yc1 gagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcttggtggcacttgcctgtaatcccagctact
caggaggctgaggcaggagaatcgcttgaacccatgaggcagagctgcagtgggctgagatcgtgccactgcactccagcctgggtgacagagtaagact
ctgtctcaaaaaaaccaaaaaacaaattatccaggcttggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggaggatcgcttgaacct
gggaggtggaggttgcagtcagctgagatcgtgccactgcactccagcctgggcaacagagtgagactccaaaaaaagaaagatAGAAATGTCTTTCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGAAATGTCTTTCATAatgtaagaaactagattttttttttttgtaatagggaagggttgaattctagtagaagctgaaacccagataaaaagatt
gcgaatacccaaatccaatcatagggagccaagtgaaggccatcctgggagccgcatgatggcagcacacagctggagctctaacagttcctggcaccta
gagccaaacggacaggggaactgggttttcacaatcaattgtattgatctaggaaaactgaaaccaaattactatgtggggcaagaggcttaccggaaag
tgctgggctatctggtcctggtggggaggaggaagggtgcttgtgttctcaggcctggatctgaggaagtgggtgcagagatgcaatggcaccatccctg
gctg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 100150066 100150368 1001145 0 + pAlu15-99925171; RIP_Alu_chr15_100_01 NA NA SINE Alu Ya4 acactgaagcttcctaacaaacagaaagaaatcttacactcttgcttgttagtatttaatacatgcattatgtgctttttaattttttggtcctactaag
gagtagctgatagcgctgttttgaaggcatatctactgtgcctctgactagcaataggaaaccggttaagttattcaacctctctacatttcagtttcag
gaaatgaagtggacaaagaagatcatcattaggcaatatgtacctccaatattctgtattatgtggagatatcaagtccgtatgtgattacacaaatcat
agtccaaaagagttcagaatgagacatatagaattgaaagtcctatttatacagatactggttaaagcccagggattagatgggtttAAAATGCTTTACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAATGCTTTACCtctatatagaaaggagtacaggaccaggaaagggcccaggggcataccatgattgagccgaggagacagtaagagagtttcagt
gacaaaggagatgcaaggagacgatggggtttctgaaaccaggagaagaaagccttcatcatagaagcaagtgataaacttcactgaacacttctaagac
atttcggacaagaatagaagagcgacctttggatttcactgcacgtagcttaacaaacgttcataaaggcagtgaaaacggaagctcggttagggtggtc
ttaggagagaatccaggtgatgacgtagagaatgcgactatagatggctctctctagaagttttacttttaagggtagcagagaactagagtagagctgc
aga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 80745749 80746034 1001146 0 - pAlu15-80763068; pAlu15-80533022; RIP_Alu_chr15_080_01 NA NA SINE Alu Sg tgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggg
gtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgc
accaggccatgaaacactttcttccacccacggctttctcttctctccccatttacagcaataagacagcctaacctgggaaagagagagagagggaagc
tacttccaaatggatgcctgtccccatcagtaataaccaagtctattcaagtgctagatgttaactttaaaagaaggaaacatcaaAAGTCCAAGTTTCA
GCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTAGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGTCAATATGGT
GAAACCCCGTCTCTACTAAAAATAAAAAATTAGTCAGGCATGGTGGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGAGGCAGAAGATTCGCTTCAACCGG
GGAAGCAGAGGTTGCAGTGAGCCAAGATCGTGCTACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGTCCAAGTtcgc
ctagctttgtcaggaatgtttttaccctcagtctgtaagtgtgaccaaatatattttttaaaggtttaccctcaatctgttaagttcaaaggtttactat
aatctcttcataagaaaactattggaaagatggaataaaatacacagaaatgtccttaacaggtaaatatttatttttctttcttattattatactttaa
gttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacacacgtgccatggtggtttgctgcacccatcaactcgtcatctacactaggtat
ttctcctaatgctatccctcccctagccccccaacccccaacaggccccagtgtgtgatgttcccccctccctgtgtccgtg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LOC80154:NR:026811:1/8
0 chr15 88760820 88761113 1001147 0 - pAlu15-88546943; RIP_Alu_chr15_088_01 NA NA SINE Alu Yb3a1 aggacttcatgtctgaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaacgaaagagcttctgcacagcaaaagaaac
taccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatatacttatctgacaaagggctaatatccagaatctacaaagaactcaaa
caaatttaaaagaaacaaacaaccccatcacaaagtaggggaaggatatgaacagacactttgcaaaagaagacatttatgcagccaacagacacatgaa
aaaatggtcatcactggccatcagagaaatgcaaatcaaaaccacaacgagataccatctcacaccagttagaatagtgatcattAAAAAGTTAAGAAAC
AGGCTGGGCACAGCGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GAGAACTCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACACGGGAGGTGAAGCCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
TCAGGAAACAaacaggtgctggagaggatgtggagaaataggaacacttttacactgctggagggactgtaaactgcttcaaccattggggaagacagtg
tggcagttcctcaaggatctagaactagaaataccatttgacccagccatcccattactgggtatgtacccaaaggattataaatcatgctgctataaag
acacatgcgcacgtatgtttactgcagcaccattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagaatggattaagaaaatgtg
gcacatatacaccatggaatactatgaagccataaaaaaggatgagttcatgtcctttgtagggacatgggaacatcacacactggggcctgttg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:IQGAP1:NM:003870:2/38
0 chr16 11909838 11910148 1001148 0 + pAlu16-11968670; RIP_Alu_chr16_011_01 NA NA SINE Alu Ya5 aaaaatacaaaaattagctggggatggtggtgcacacgtgtaatcccagctacctgggaggctgaggcaggagaatcgcttgaaccaggaaggcagaggt
tgcagtgagccaagatcgtgccagtgcactccagcctgggcgacatagagagattcatctcaaaaacaaaaaagaaacaaaaaaccatttaaataacatt
taaaatacacaaaccaaaaccatttcagataccctcaaaaaagtacaaaaataacagaaacagccgggtgcggtggctcacacctgtaatcccagcactt
tgggaggccgaggtgggtggctcacttgaggtcagtagccaccaagaccatcctggccaacatggtgaaaccctgtctctactaaaAATACAAAAATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCGGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATACAAAAATTAGccaggcatggcggtgcgcacctgtcatcccagctactcaggagactgaggcaggagaatcgcttgaacccgggag
gtggaggttgcagtgagccgagatcacgccattgcactgcagccggggcaacaaagggagactccatgtcaaaaataaaaaaataaccgaaacatttttc
tgctaccaaaattaaccacctaaaggcaatggacaagtagtatggtaacatactggagttctacagaaatattcaaccaggaaattacccagtgacattc
tgcagaatgcgctttttttttttcaagtgaagcgacatacaattacctagtgggaatgtggtttggaagtgagtgtcaccactgttaggtcaggtgctcg
ggaaagcctta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GSPT1:NM:002094:1/15
0 chr16 31892766 31893090 1001149 0 + pAlu16-31982109; RIP_Alu_chr16_031_02 NA NA SINE Alu Yb7 gatcaggactgaacacacaggaatcaccatggagtttgtgctgagctgggttttccttgctgctattttaaaagttgatttatggagagctagagagatt
gagtgtgagtggacatgagtgagagaaacagtggatatgtgtggcagtttctgaccttagtgtctctgtgtttgcaggtgtccagtgtgaggtgcagctg
gtggagtctgcgggaggccttggtacagcctcggggggtcccttagactctcctgtgcagcctctgaattcactttcagtaacgcctggatgagctgggt
ccgccaggctccagggaaggggctggagtgggttggccgtattaaaagcaaagctaatggtgggacaacagactacgctgcacctgtgaaaGGCAGATTC
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGGGAGATTCaccatctcaagagatgattcaaaaaacacgctgtatctgcaaatgaacagcctgaaaaccgaggacacggc
cgtgtattactgtaccacagacacagtgaggggaggtcagtgtgagcccagacacaaacctccctgcaggggcgcgcggggcaaccagggggcgctcggg
acccactgaggacgggacaggtcccaggagcaggtgccgggagaggtttcctttctcctcagctggaaaagtcacgtttatcttcgcaggactctggagt
cttctaggctgtgatattttgttacttatatttattatgaactttatcattaatatttaaattttagtaattattaacattctacatattattatatttt
taagtatatactttcaagaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 32708826 32709133 1001150 0 - pAlu16-32798404; RIP_Alu_chr16_032_02 NA NA SINE Alu Yc2 aagccactgacttgtagacattaatgagtgcactctacactatgtaaattatatctcaataaatcctttcaaaaatacacagaagagtaaggggttttgg
aatgctgcagctgggaggcagtttgaaatactgaataggcctcatcgagaatgtgaagtttcagtaaagacttgaggaagttgaatgagctgatcaatgg
atatatggagggctatctttccaagccaagaaattaactagagtcttgaccataaggcagcagcatgttggcatgtccagaggacagtgaggtggccagg
accactggtaagatcaagggtgaagatataaaagaattttggcagttaacatgtggcagatgatgatgggcttgcagatcattgtAAGAAATGTTGTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAAAAAAACAAAA
CAAAAAAAAAGAAATGTTGTTTTtagtgtacatgaaatggggagacaaatcattatcccattatcaatattttaataaattggatccatgaaccaaatcc
aatgagatcaaatcaattaataataatatgcaaatttgtattaaaattaaaagaattacttgcacatttgagaacaggagagacatgatttttatcagca
ataataaacattattaattttaattgtgatcagctaattgagattaattgcaatacatcatgctttataatgtgactgccaaaaggaaaatatgattgta
atcttatactacatctatcaatgtcttttatacataagagtatagagtaagcccgtagttttcaaagccaacctatgaagcagtgacatcttatgcaagt
ttgctgct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 33243048 33243049 1001151 0 + pAlu16-33330708; pAlu16-32335202; RIP_Alu_chr16_033_01 NA NA SINE Alu Ya5 tcgctggcttttgaatgccaacaatcatattctttataaggcacagggaagatttttctaaagaacaagtatgtgaacctgaaaagtaatcaccacttgg
tagtgacaatatggatagggtgaagggcgtcaccaagaagcaatgaaaagatacatttgcagttaaatttgaaaaccatgatgtttaatacatatagtaa
taaagaatactttctcctgtttcaaaattattttagaatttaagatagaagctaaaatacctagggataatgatatgactattgaaaattaaaaattaaa
ggacattttgagtattagaagttaagaatgagaacttattacccaatgaacaggggataattcattatgctccatatccattgaattAAAAGACAGGCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGACAGGCCCattacctggataatttgaaagtttaattttatttaaaagtcttgtttcattcatcaagctaaaggattagctcccagaaatattctag
gattgcatatccccaactctgtaggaagtatagaaagaatgttataagggccaccacctaaacattattatgtaaataatttagtaccattccatttgcc
tttgtagatttaaaaatgtaaatggctttctcatattaggaaacatcatttttcaaaacccagataaacatagtatattgcaagagaataattattttct
ttattaaaaaagaaatactggatgctaagtccaaaagacataaattattttatactaataactaccaacattttattcattaaaatataaaggtcaaag Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 49924454 49924455 1001152 0 + pAlu16-56162982; RIP_Alu_chr16_045_01 NA NA SINE Alu Yb7 aaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactgggtacataacaaaatgaaggcagaaataaagatgttctttgaaaccaac
gagaacaaagacccaacataccagaatctctgggacacatttaaggcagtgtgtagagggaaatttatagcactaaatgctcacaagagaaagcaggaaa
aatctaaaactgacaccctgacatcagaattaaaagaactagagaagcaagagcaaacacattcaaaagctaacagaaggcaagaaataactaagatcag
agcagaactgaaggagatagagacacaaaaaacccttcaaaaaaatcagtgaagccaggagctggttttttcaaaagatcaacaaAATTGATAGACTGCT
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATTGATAGACTGCTagcaagactaataaagaagaaaagagagaagaatcaaacagatgcagtaaaaaatgataaaggggatatcaccaccgatccc
acagaaatacaaactaccatcagagaatattataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatacaccc
tcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtcc
aagaccagacggattcacagccgaattctaccagaggtacaaggaggagctggtaccattccttctgaaactattccaatcaatagaaaaagagggaatc
ctc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 80403155 80403459 1001153 0 - pAlu16-81584455; RIP_Alu_chr16_080_02 NA NA SINE Alu Yb3a2 ggcatgggcaaagacttcatgactaaaacaccaaaagcaatggcaaaattaacaaatgggatctaattcagctaaagagcttctgcacagcaaaagaaac
tatcatcagagtgagcaggcaacatacagaatggaagaaaaattttgcaatctatccatctgacaaatggctaatatccagaatctacaaagaacttaaa
caaatttacaagaaaaaacaaccccatcaaaaagtggacaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaagaaacgtaggaaa
aaagctcatcatcactggtcattagagaaatgcaaatcaaaactacaatgagataccatctcatgccagttagaatgacgatcattAAAAAGTCAGTAAA
TAAACAACAGGCCGGGTGCGGTGGCTCACGCCTGTAATCTCAGCACTGTGGGAGGCTGAGGCGTGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGG
CTAACACGGTGAAACTTCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGA
GAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATAGCGCCACTGCAGTCCAGCCTGGGCAAAAGAGCAAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAGTCAGcaacagatgctggagaggatgtagagaaataggaatgcttttacactgttggtaggagtgtaaatcagttcaaccattgtg
gaagacagcgttgcaattcctcgaggatctagcaccagaaataccatttgatccagcaatcctattactgggtataaaccgaaaggattgtaaatcattc
tactataaagacacatgcacacatatgtttattgcggcactattcacaagagcaaagacatggaaccaatccaaatgcccatcgatgatagactggataa
agaaaatgtggcacatatacaccatggaatactatgcaaccataaaaaaggatgagctcatgtcctttgcagggacatggatgaagctggaaaccatcat
tctca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PLCG2:NM:002661:2/33
0 chr16 34193930 34194231 1001154 0 + pAlu16-35376640; RIP_Alu_chr16_034_01 NA NA SINE Alu Yc2 agcaggtggctacagtgatacaggtttgtgtagcatttctcctaagttctcaaaactttgaaacttctctgccttctttttacaattgtttaaaataaat
tgtgtggttttctaaacattccagtctagacaagacatgccttcagaggatgttttatctttacaagtctctctcgttaatcttgacatgaaatgttacc
ctgatcgtgtggactatattgataaagttctagaaacagcagcggagatattcaataagctcaaccttgaacagtaagttacattttttgtaaaaatctt
cataaagacatttttgtcttagatttgcttttctttctcaattgttttttgaactgctggcatttgtcttgttttaatcatgcattaagaTTGTCATGCT
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCAGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGT
GAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCGGGCGTGGGCGCGGGCGCCTGTAGTCCCGCTACTAGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCGGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGTGATAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
GGTTGCCATGCTtagcactactaggggcagaaagtggtgaccaattacttgtttttttatattaatgaaattgtggtacctatggaccataggcagtctt
cagggaccagtgcctccaatttggatccctctctgtgtgtcaggggcgtccaatcttttggcttccctgggctgcactgaaagaagcattttcttgggcc
gcacataaaatacactaacactaacaatagctgatgagcttaaaaaaatcgcaaaagctcataatgttttaagaaaattacaaatttgtgttgggccgca
ttcaaagctatcctgggctgcatgcggcctgtgggctgcggtttggacaagcttgctataagtgaatgagtttgttcttaaactggtaaggaaactttgt
ca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 30119159 30119479 1001155 0 + pAlu16-29470755; RIP_Alu_chr16_030_01 NA NA SINE Alu Sx gtttccacatgtgaggggcatgaggggggctcaaggaggggagcatcggggagaggagcgcactgggtggaggctgggggtcccagcaggaaatggtgag
acaaagggcgctggctggcagggagacagcacaggcaggccctagagcttcctcagcacagctggactctcctggagaccttcacacaccctgatatctg
ggccccgcgctacgagggtgctttcactggtctgcactatgccccaggccctgggattttgaacagctctgcaggtgactgaaaggtgcggccaggctgg
ggaacgacctggtttcagccccagccccgccactgactgactttgtgagtgcgggcaagtcactcagcctccctaggcctcagtgacttccctgaaagcA
AAAACTCTGCAAAGGGGCAGCTGGGTGCTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTAGACAAATCACTTGAGGCCAGGAGTTCTAGA
CCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAGAAAAAAAAAAATTAGCTGAGCATGGTTGTACATGCTTGTAATCCCAGCTACTTGGGATGC
CGAGGCGGGAGGATTGCTTGAACCCAAGAGGTGGAGTTTGCAGTGAGCTGAGATTGTGCCACACTGCACTCCAGCTTGGGTGAGAGTGAGACTCCATCTC
AAAAAAAAAAAAAAAAAGAGAGgaatcccactttcttgctgttgtgatggtggtaagggaacgggcctggctctggcccctgatgcaggaacatggagct
gatccaggacacctcccgcccgccactggagtacgtgaagggggtcccgctcatcaagtactttgcagaggcactggggcccctgcagagcttccaagcc
cgacctgatgacctgctcatcaacacctaccccaagtctggtaagtgaggagggccacccaccctctcccaggcggcagtccccaccttggtcagcaagg
tcgtgccctcagcctgctcacctcctatctccctccctctccaggcaccacctgggtgagccagatactggacatgatctaccagggcggcgacctagag
aagtgtaaccgggctcccatc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SULT1A3:NM:003166:3/10
0 chr17 5405476 5405786 1001156 0 - pAlu17-5409430; RIP_Alu_chr17_005_01 NA NA SINE Alu Yb7 caggtgtggcccatctggctaccacaggcagaggtggttggagtcacccaccctgccatctgggtgtttccctgggcagtaacaggaggctgcacccctc
agccggattcagacagaattaggaccactgcgctggaagctctagcagacatggcctgcatggctaggagaggcggtggtgggtggagtcacccaccctg
ccttcagagtgtttctcggggaaccgggagtttgcctctgctggctgagttcagacagaagcagactgctagcagacattgcccgcctggctaccagtgg
cagggatgggcagagtcaccccctctgctgtccaagtggggaacctgaacaaaataatatcccaaagaacagtttcatggcaagtatAAAAACCACATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAACCACATGGcatgctttttgatctatcaagagcaaaggtaggaaaacttgtttgagtaaaagacaagatagtaggctgggtgcag
tggcccatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgtgaggtcaggagtttgagaccagcatggccaacatggtgaaacccca
tctctacaaaaatacaaaaattagctggcgtgatggcgggtacttataatcccagctactctgggggctgaggcaggagaatcgcttgaccctgggaggc
ggaggttgcggtgagccgagatcgtgccactgcactccagcctgggtgacaagagagaaactctgcctcaaaaaaataaataaaataaaatgaaattcac
ctaaggagaga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NLRP1:NM:001033053:3/16
0 chr17 6815461 6815758 1001157 0 + pAlu17-6819420; RIP_Alu_chr17_006_02 NA NA SINE Alu Ye5 aaaacaatgggagagacagacaacattataccttcaggaagaaataatttgagtgacagcagatttctcatcagcaatcacagaggccacaaggaagtag
aacagccttttttaaatacagtcacacatcacttaaccacagggatacattctgagatgtacatcactctgagaaatgcatcactagccaatttcagtgt
tgtgcatacatcatggagtgcacttaaacctagacggtataacccactacacacctagactatatagtatagtccattgctcaaacaacctgcacaacac
gttactatactgaatattgtaggcaactgcaacacaattgtaagtatttgtgtatctcaacacagaaaatgtacagtaaaagtatggtattaaagaTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTCGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGAGCCTGCAGTGAGCCGGGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGGTT
CAaaatggcatacctgtacagggcactgaccatgaatggaacttgcagaactggaagttgctgcagatgggtcagtgagtgagtggtgagggaacgtgaa
gacccagggcattgctggacactcctgtagactttataaacattgtacatctcccctacactaaatttatctttaaaaacttcttttggccaggcacggt
ggctcacaccgtaatcccagcactttgggagcccaaggcgggcagatcatgaggtcaggagctcgagaccaacctgactaacatgctgaaaccccgtctc
tactaaaaatacaaaatgtagccaggcgtggtggtgcccgcctgtaatcccagctactcagaggctgaggcaggagaatcacttgaacccgggaggcg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 15804312 15804616 1001158 0 + pAlu17-15806542; RIP_Alu_chr17_015_02 NA NA SINE Alu Yc1 gttgttcttttttaaaaaatccaggttctattaaaaggtcatgcttgcatttaatatgttcctttaatctgaaagagttcctcagtcttttgtttgtttt
agtctttcaagacattaacattttcctccgggcacggtggctcacacctgtaatgggagcctgagcaggaggatcatttgaggccagaagttcaagacca
gcctgggcaacacagcgaggccccatctctatgaaaattaagaaaattagtcaaatgtggtggcgcatgcctatagtcctagctattcaggaggctgagg
tgggaggattgcttgagcccaggagttcaaggttacagtgagctattagattggtgcaaaagtaattgtggttttggccattaaaaaAAGGCACAAATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGGCACAAATTGGgccgggcgcggtggctcatgcctgtaatctcagcactttgggaggcgaaggcaggcagatcatgaggtcaggagatcgaga
ccatcctggctaacacggtgaaaccccgtctctactaaaaacacacacaaaaaaattagccgggcatggtggtgggtgcctgtagtcccagctactcggg
aggctgaggcaggagaatggcgtgagtccaggagacagaggttgcagtgagccgagatcatgccactgcactccagcctgggcgacagagcaagactccg
tctcaaaaaaaaaagtctgggcgcagtagctcacgactataatcccagcactttgggaggccgaggcgggcgattcacgagttcaggagattgagaccat
cctggc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ADORA2B:NM:000676:1/2
0 chr17 33650510 33650827 1001159 0 + pAlu17-36307221; RIP_Alu_chr17_033_01 NA NA SINE Alu Y ggtcggatcccttgagcccaggagttcaagaccagcctgggcaatataggaagaccccccccatatctataaaaaaatacaaatacgaatattagccagg
catggtggtacacgcctgtaatatcagctacttgggagggtgaggtgggaggatggcttgagaccaggagacagaggttgtggtagttgagatcatgcca
ctgccccccagcctgggtgacagagcgagactctctcaaaaaaaaaaaaagtaaaaagcaatccagctccaatactgatgtacttgtaagagtttatgcc
aaacttggtatctatttaaaaatcagctcatacgggaataagatttccagtcaaaatggactactttcatactaaaattataaggtcTAAAACAGTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCGGGAGCCTGTAGTCCCAGCTACTCCGGAGGGTGACGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGGCTGGGGGACAGAGCGAGACCCCGTCTCAAAAAAAAATAAAAAATA
AAATAAAATAAAATAAAATAAAACAGTTCTCattttatagacactaatcgagttccacattctataccatgtttctttttagcatgttcttcccctgtaa
ctaactccattatttagcttctaatcttcatattgtctcataaagcaaatgtttttctctgaattaggagtatgacttatctcaattttaaactatagta
caaaaagaaaaaaaaactttaagaaaaacataaaaacgaagcctctttgaggagcctttcatgttcaaagtacttaatttttcaaataactcatcagctt
tattatgcgtattatattcattttatacttatgaaaatatgatttccctagtaccacaaaataagttaatcttggaagtggaattttaattgtgacattt
gcccgggtgtggtggctc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 42890378 42890672 1001160 0 + pAlu17-45877357; RIP_Alu_chr17_042_01 NA NA SINE Alu Y cgtgatcttggctcactgcaaactccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagcagggattacaggcatgcgccaccacacc
cggctaattttgtatttttagtaggggtggggtttctccacgttggtcaggctggtctcgaactcctgacctcaggtgatccgcccacctcagcctcgca
aagtgctgggattacaggcgtgagccaccgcgcccggcctgaagggtacttttgacaaactcagaggccccacagtacagggatgtacattcacaaacaa
ccaagagaaaaagagaacaagtaaacccctctcctcctttcagatgcaacactgaatggcaaaccaggggtgagaatacactaaAAGTACATAGACCCTC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCTGACTCTACTAAGAACACCAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAGTA
CATAGACCCTCaaagagaggacaccagggctctgaccatctcaaactctgaaatttgatgaaggtaatccgaaattacaacccccaaggcacgaagcaga
tgcaaatatacatcctctctaaaagaaaatagtatcattttggctacaaattatttctacctttttttttttttttttttttttgagacaaagccttggt
ctatggcccaggctggactgcactggcgtgatctcggctcactgcaacttcctccttccagttcaagcaattctcctgcctcagcctcccaagtagctgg
gattacaggtgcccaccaccacacctggctaatttttgtatttttagtagatatgaggtttcactgtgtagaccaggctggtctcgaactcctga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 44583453 44583771 1001161 0 + pAlu17-47570433; RIP_Alu_chr17_044_01 NA NA SINE Alu Ya5 gatgtgctttgttaaacagatgcttgacggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaagg
ccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatccgctgaccttccctccactattgtcctgtgaacctgccaaatccccct
ctgcgagaaacacccaagaatgatcaattaaaaaaataataataaaaaataaaaattttgcctttttcatattaccgtaagtattcactatgatgatcta
atcttttttttcaaggtaattaaatgatctcctgcttaaactgggtcccgaaggctaacatttcaaccattgtaccgtagttcctcaaaAAGCTAATCTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGCTAATCTTgctggatggtgctatgtgcttgcttttgactaaagattgttattggccgggtgtggtggctaacatttgt
aatcccagcactttgggaggccaaggcatgcggatcataagatcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctactaaaaatac
aaaaattagccgggcatggtggtgtgtgcttgtagtcccagctactaaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtga
gctgagatcgcaccactgaactccagcctggcaacctagcgagactctgtcacaaaaaaaaaaaaaaaatcgttatcaacaaccaaaaaaaccataaaaa
tagttactctgtttcctct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:B4GALNT2:NM:001159388:3/11
0 chr17 62951328 62951646 1001162 0 - pAlu17-65938308; RIP_Alu_chr17_062_02 NA NA SINE Alu Yb7 aatggttggcaaagcatgcaggctgatgcctgctttgtaaataaagttttattggaacacagcgatgctcattcattctatggctgctttcatttacaat
ggcagagttgaatactttgagagactgtgtaacccccaaggctgaaaatatttattatctggccctttatagaaataagtttgcagaccgttgttctatt
ccacggctgggtccagtctgggccaccctcagctgttcatctagatctgttctgcccaggaccaaagctatttgctatgtgtggccactgagcctttgaa
gtgtggcccatggaatagagggattgaattttaaattttctttcattttaattcatttaaatttaagactggtgcttgattcagttattAGAAAACCTTC
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAACCTTCatatatgtttgaaacactttgggtatgtgaatctactttttcaactgggaattttatgaaatctaaataa
agatcaagtactgccaatgaaaatttagcgtctgacttgggagtgctgtttaagtctaaaatgcacactagatttggaagacttactacaaaaaaaagca
aaatagttcattaataatttttatgttgattgaaatgatatttttgtatactgggttaactaaaatatatttttaaaattaacttcacttgccttttttt
ttccttttctttcttatttttttagagacagggtctcgctctgtcatccaggctggagtgcagaggtatgaccgtagctcattgcagccttgacccccag
tgctcaagcgatccttcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PITPNC1:NM:012417:1/9
0 chr17 63434828 63435133 1001163 0 + pAlu17-66421768; RIP_Alu_chr17_063_01 NA NA SINE Alu Y agctcactgcatcctccacctcccagtttcaagtgattctcctgcctcagcctcctgagtaactgggattataagcgcatgccaccacacctggctaatt
ttttgtatttttagtaaagacagggttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatccaccggcctcgggctcctaaagtgct
gggattacaggcgtgatccaccatacctggcctagtattaaatctttataacaacataattacaagcttgagacttctattaccctgttttacagatgag
taactggggcacagtaaggttgagtaatttggccaaggttatacagctagtaattacatgataccaaaactgatagcttctgccagtgctcttAATATAA
GGTTGAAAGAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTG
GCTAACACGATGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCTTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGG
AGAATGACGTGAACCCGGGAGGCAGGGCTTGCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCTTGTCTCAGAAAAAA
AAAAAAAATAATAAataataataataagaaggttgaaggaaaaaagaaaagagccaattaacataaaacatagctgttagaagcctccttctacaaatgg
ccatgaagtctaagtcgataattatatctgctttcttttttttttttttccttttttgagacagagtcttgctctgtcgctcaggctggggtgcagtggc
gtgatctcggctcactgcaacctccacctcccaggtttgagcgattctgctgcctcagcctccagagtaactgggactataagcatgcaccaccatgcct
ggctaatttttgtatttttagtagagacagggtttcaccatgttagtcaggctggtctcgaactcctaacctcaggtgatccactcgcctcaccctccca
aagtgct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 1177188 1177189 1001164 0 - pAlu17-1180422; RIP_Alu_chr17_001_01 NA NA SINE Alu Y cactgtgtgtcaaccatgcagcctttctggagaggaactgggcagaataagctggacatgggcgtgtctttgggcggtgccttcacttctagggatgcag
gttaagctggacatgggcgtgtctttgggcggtggcttcacttctagggatgcaggtattcgctggacagatgtttgttaagctccctggtgccaggccc
agggagttggtcgtgggtgagaccccagagaccccagagcacattcagcagggacaaggcaattgtcatgcaattatctatgcaggaacagggtgagaag
cACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAACAGCCACTAATGTCATTCATGAAGGCTCTGCCTGCC
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCTGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGATGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGA
CGGAGCTTGCAGTGAGCAGAGATCGTACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCCAGAAAGAAAAAACAAAAACAGCCACTAAT
GTCATTCATGAAGGCTCTGCCTGCCcatatgaatttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggtacgatctctgc
tcactgcaagctccgtctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccatcacgacgcccggctaattttt
tgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccgccctcctcggcctcccaaagtgctgggat
tacaggcgtgagccaccgcgcccagc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 10144160 10144496 1001165 0 + pAlu17-10146390; RIP_Alu_chr17_010_01 NA NA SINE Alu Yb7 ttatttcacttagcataatgtcccccaagttcacctatgttgtcacaaattgcaggatttccttcttttttatggcccaatagtattcccaatagtatat
gaatatatatattcaaatttgcatatatatgtacatttgcatatatatgcacattgtggtgatatatacatatatacgagatatatacatatatatacgt
atatatggatatatacgtgtatatatatacatatatacgagatatatacgtgtatatatatatacatatatatgtatatacacattttctttatccattt
atccattgatggacatttagtttgtttccacattgtggctattgtgaagagtgatgcaataaacatggaagtgtagatatctcttcAAGATCCTGATTCA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTCCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCCTGATTCAatttcctttggatatatgcccagtagtgggatggctggatcatatggta
gttccatttttaagtttttgaaaaactgctattaggttgtaccaatttgcattcccaccagcagtgcacaagagttcccttttctccacgtcctcaccaa
cacttttgtctttctgataatagctattctgagagatgtagagtgatatagggtctttatttttaaatgtttgtggaagctagtgatttacctggccatg
ggttggatttccatgttttctacttggagcaaagatcctccactttcacattccttattttatatttacgatagagcagcaagaatctaaatatcagctt
catagaagaggaatggaccatgataataaacacagca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA downstream:MYH13:NM:003802
0 chr17 18900614 18900909 1001166 0 - pAlu17-18902845; RIP_Alu_chr17_018_01 NA NA SINE Alu Ya1 agaaaccccatctctactaaaaatacaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttga
acccgggaggtggaggttgcggtgagctgagatcatgccattacactccagcctgagcaagaagagtgaaactccgtctcaaaaaataaaaatatatatt
tgtggttaggcatggtgactcaggcttacacctgtaatcctagaactttgggaggccgaggtaggaggattgcttgaggccaggagttcaagactagcct
gggcaacatagcaagatcccatctctacagaaaagtaaatttttaaaaattatgacattttgagctgcatgatgaaaaaaatttAAAAAGAAAGAAAGAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACGCG
GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCATGCTGGTGGGTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCG
TGAACCATTCTCCATTCTCGGAGCTTGCAGTGAGCCGAGATTGTGCCATTGTACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCACAAAAAAAAAAAAA
AGAAAGAAAGAAagaaagaaagaaagaaagaaaattggccacgtgtgttagtgcacacctgtagtcccaactagacaggatgctgaggcgggaggatctc
ctgagcccaggagttcaaggctgcagtgagctgtgatcgtgccactgctctccagcctaagatacgggaaaaaccaaagcgtttttcttttctttttttt
ctgctgtcattgtatgaaatagtccataggtttccattatatccagttatagagggtgttactgagttacggattttctgcctgctggatctgtccgttt
ctgatagagggacattgaagtcgccaactataatagtttctccttgcggtgctgtcgctttttccctcacatattttgatgttctcttgttaggat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 15573202 15573501 1001167 0 + pAlu17-15575433; RIP_Alu_chr17_015_03 NA NA SINE Alu Y gcatatcagttacctcagatacttatcttttttttttgtggtgagaacatttaaaatctgctgtctcaaaaatttcaagtattaccacattgttattaac
tgtagtcaacatgttgtacaatagagctcttgagcttttcctcctagctgacatttttagtgacatgcgttgcatttgaacatatgcagttaccatgacc
aagctattttatttgtagggctgtacttaactaaaatatctatacatgtgtaccaaaagaaattaacaagaatgttcatagtggctttattgctagtagt
cccaaaatggaaacaaaccaatgtccatcaacagtagaattgatagatgtgccatattcatgcagagcaccaccgagcagggaaaagaAATGAACTGCTT
GGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGATGGATCACTAGGTCAGGAGATTGAGACCATCCTGGCTAACACA
GTGAAACCTCATCTCTGCTACAAATACAAAAAAATTACCTGGGCATGGTGGCAAGCGCCTGTAAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
TGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCATCACTGCACTCCAGCCTGGCCGACAGAGCGAAACTCCATCTCAAAAAAAAAAAAAAAA
AATGAACTGCTTcatgaaaccacttgaaggagtgtcacaaatgtaatgctgggccaaagaagccacacacaaaaccattcctactgaatggccctccatg
cttccatttatgaaacagacaacactaattggggctgctaaaaaccaggtgactctttgctttgacaagacaggtgggcagtggttagggagcagacctt
caggagagggatttccagattgttatttttatttcattttcttggactgtgtggtagctccaagcatgtgtcctctttgtgataaatcactgagtagtag
aataataggattcctgtgtatattatactttaataaacatatttgaattcctttttccattaggacaaataatataaatcataataaatctttgcaattt
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 27362135 27362427 1001168 0 - pAlu17-30187803; RIP_Alu_chr17_027_02 NA NA SINE Alu Sg gtgaaaccccatctctactaaaaatccaaaattagctgggcgtggtggtgggtgcctgtaatcccagctactcgggaggctgaggcacgagaatcatttc
aacccaggaggtggaggctgcagtgagccaagatcgtgccactgcactccattctgggcaacggagctagattctgtcttaaaaaaagaaaaatgcataa
aggagcacaatggtttagcctggaatcccagcactttgggaggccaaggcaggaagattgcttgagccctaaagttcaagaccagcctgggcaatatagt
gagacctcatctctatttgaaaagaaagaaagaaaaatcaaagaaaatgaggtatatatgcacgataggatattattcagccattaaaAAAGTGAAATCC
GGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGGGTTCGAGAACTGACTGGCTAACATA
GTGAAACCCCGTCTCTTCTAAAAATACAAAAATCAGCGGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTT
GAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTAGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAGTGA
AATCCttcatctataaagctagaggtttggaaaataaaacctatttgcagcaacatggatagaactggaggacattatgttaagtgaaataggccaagga
cagaaagacaagtatcgcatattctcattcatatgtgagagattaagaagttgatttcatggagataggcagtagaatgatggttactgggggctgggaa
gcaggtagggatgaagacaagttgattgatgggcataaaagcacagtcagatagaaggaataagttttagtttttgtttgcacagtagggtaactagagt
caacaataacttagtgtatattttaaaatagctagaacatttgttatcttcccaatacaaaaaaaaggataaacatctgagatgatggatacc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 60094399 60094709 1001169 0 - pAlu17-63081380; RIP_Alu_chr17_060_01 NA NA SINE Alu Sg1 tcggatcactgcaaccttgacctctgtggactcaggtgatccttctatctcagctttccgagtagctgggtctataggtgcatgccaccactcctggcta
attttttgtagatagggggttttgccatgttgctcaggctggtttcaaactcctgggctcaagtgattcctctgcctcggcctcccaaagtgctaggatt
acaggcatgagtcaccatgcccagcccttgaatggttttaaagtgttattcttatctgaatatttgttttaaacaacaggatttaaactcacaggaaagc
ctaaatataaacctctgcacgttaaccctatatacatttttctatgctgtcacttacatatttgaatgtactgctttaaacttccaaacAAGCAGCCTCT
GGCTGGGCGCAGTGACTCACTCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCGGATGGATCACAAGGTCTGGAGTTCAAGACCAGCCTGGCCGAGATGG
TGAAACCTGATCTCTACTAAAAATACAAAAATTATTTGGGCACGGTGGTGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGGAATTGCTTGA
ACCCGGAAGGTGGAGCTTACAGTGAGCCAAGATTTCGCCACTGCGCTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTGAAAAAAAAAAAAAGAGAGAGG
AAAAAAAAAAGAAGCAGCtcccccaggtctcccatcacgttctgaaatcctaacttctattacctaatacaaggctacaaattatgttagtcgggtggtt
gggaacaaagcgtgtgccataaaaataaggtaaatgtgaatgtgtacatcagtttgctaagttttttgccactgtctggcctcttaaattgtggtagcag
ctattgttcacattgatatattacattgatattgatattgttcacgtcatatatatttgtagtacaaggaagcatttctaaaggaccttgttcattgctt
tgcacaaaatagccacttaatatttgttgaatgaattgctggcactatctctggtgttttaatttttatttatttatgtatttatttttgatatggagtc
tcactct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 63718957 63719255 1001170 0 + pAlu17-66671776; RIP_Alu_chr17_063_02 NA NA SINE Alu Yi6 gcctgtggtcctagttacttgtgagactgaggtaggaggatcacctgagcccaaggaggttgaggctgcactgagctgtgtttacaccattgcactccag
cctgaaagacagagtgagaccctgtctcaaaaaaaaagggggggggggaggtggttagagtgtaaattttatgttatgcatactttaccacaattttcaa
aaattatttgaaagaagccacacacaaaaatcttgtttagtgaaatcacgtattgtatgatttcgtttatatggaatgtcccaaatgggcaaattcacag
gaagtaagtaaatacttgccaggaaatgggaggggaaatggttgagtagggccagtgattctggggcttctttctggggtgatgAAAATGTTCTGGAATT
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGATGCGGTAGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTTTCTACTAAAAATGCAAAAAAATTAGCTGGGCGTGGTGGCGGGCATCTGTAGTCCCAGCAACTCGGGAGGCTGAGGCAGGAGAATGGTG
TGAACCTGGGAGGTGGAGATTGCAGTGAGCCAAGATTACACCACTGCACTCCAGCCTGGGCAACAAAGCAAGATTCCGTCTTAAAAAAAAAAAAAAGAAA
AAATGTTTTGGAATTaaatagtggtgatggttttacaaccttgtgaatactatactaaaacccactaaattgtgcacttatttaaaagggtgaatttatg
gtgtataaattaattatatctcaataaaaataaaaagtggtatgaagaattgggaaaacatatgtatatgtatatatatgtatatatgtatatgtatata
tatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatatgtatatatgtgtatatgtatatatgtatgtg
tatgtatatgtatatatgtacatgtatatatatgtatatgtatatatgtgtgtgtatgtatatatatatgccttgagtcttttttaatcagttcccttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 40921807 40922113 1001171 0 + pAlu17-43576949; RIP_Alu_chr17_040_02 NA NA SINE Alu Sp gaggattctaacaaggaccaaactctgaatgaatgaaaacaggaccgttgcctgacccattcaccattgtatttctagtacctggaacagtgtttgtcac
acactggtgctcaaaaaataagctgttgaatgaattgattaataaaataaaaacaaggcacggggtaagtacctccacttcacacactgtgggaagttgg
ggtatacaactcttaagtgctggggcaactgtggagctcctgtcattaagccaagctgccaataaggctgaaaacaacttaaatatactgcatattaatg
ggaggacattgaaggtaaacagcattcacttttcaaaggaatacgactataagtggcaagcagagacagtgttctttggggctctttaaaaCTGCAATCA
GCCAGGTGCGGCGGCTCACGCCCGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCGGGAGTTGGAGACCAGCCTGATCAACACA
GAGAAACCCCCATCTCTACTAAAAATACAAAACTAGCCGGGCATGGTGGTGTATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTT
GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCATGCCACTGCACTCCAGGCTGGGGAACAAGAGTAAACTCCGTCGAAAAAAAGAAAGAAAGAAAG
AAAAAAGCTGCAATCAaatggcccacccatctgatgccgggtcctcaggattcagagaaaatgtgtaccaaaaagcccccaggaaactataaatgctgag
catgggacttgggtgcctctggaatgtccttctgcctcagctactctgagataacatggttccctgtgttcatggaacccagatggccaaaagtcaatga
tccagcacttaaaagaaaagaaagcgattcaagagcctctgtacccacctaggcctcagcctccccaggacctactcacctatactcttcacaacaggta
acgttgcctctggcacccatcatatcccctgaattcagcatcaggactgatctgccatcagctctggcagggagaggcccttacaagtgccaagaaaagg
aacacga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PLEKHM1:NM:014798:1/12
0 chr17 41005380 41005683 1001172 0 - pAlu17-43660519; RIP_Alu_chr17_041_01 NA NA SINE Alu Sx ttgagtttggaccatagagaagtcattcttgtgtggacctcagtttactcacctgtacagtataggatggactagatgatctaatggtcaggggattggc
aaacttgttcttagggcaccaattagtaaatattttaggttttgcaggccacctggctatgtcacagctgctcagctcggcccttgtaggatgaaagcag
ccatagacaataagtaaacaaatgagtgtggctgtgttccagtaaaactttatttccaaaaacaggctgtggccggccatagtttgttcaccccattttt
gagctcttgacattctttagtctgtgatttcgataattagtttaggaaaaaagctttgactttcataaataatgcttctggaaatctagtAAAACCTTTA
AATTTTGGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATTGCCTGAGCTCGAGAGTTCGAGACCAGCCTGGC
CAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATCGCTTAAACTCAGGAGGCGGAGGTTGCAGTGAGCCGATATCGTGCCACTGCACTTCAGCCTGGGTGACAGAGTGAGACTTCATCTCAAAAAAAAAAA
AAAAAAAACCTTTAcattttatttttgctttttccctttatcaggaaagtaatgtagaaaatttagaaaacccagaacattaatattttggttcctctca
ttagttaaccatctttgggtggacatgtgtacatacatacatacctttttttttttcttttgagcaaaaaagtacatactttttctttttttctcttctg
ccacccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggga
ctacaggtgctcgctgccacacccagctaattttttgtattttttaatagagatggagtttcaccgtgttgcccaggctggtgtcgaactcctgagctca
ggtg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 63425567 63425876 1001173 0 + pAlu17-66412496; RIP_Alu_chr17_063_03 NA NA SINE Alu Sq agacaagaccagataaacactagtaaattcatgcccttggggccctgtttatagatgtcctcagatccccttctttcacgtgctctttctttaagtcaag
tggaataaaattcactaggcttaagatttctcagttacaaccacatctctaacataccttcttaccattacattcaaatcacccagaacctattgggggt
gttcccgaaactcttctgttgcaggaatgttgtgaatgccctgaaacccacaccctgaaatgtagaggcagggagcaggctggatggctcccaggggctc
ccagaggctcctggggtggcaccagctggaagaacctgccagagtccagtcctgggtcttgggcagtgtctggcttgagccttagaaatCACACTAATGG
GCCAGGCGCGGTGGCTCACGCCTGTAATCTCAGCCCTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATG
GTGAAACCCTGTCTCTACTAAAAATACAAAAATAGCCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGTAGGCTGAGGCAGGAGAATCGCTTG
AACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCATCGCACTCCAGCCTAGGGGACAAGAGCGAGACTTCGTCTCAAAAAAGAAGAAGAAGAAA
AAAAAGAAACCACACTAATGGtggaaggtacaaagagttcaaagagactgatctatgtagccagaatgccagtttattaatttacaatgagaaatcaaat
cagaaatgcaaactcatgtcagcctgggtagcattctctttctataaacaagccacagaggaagccaagttatcctcagggtgcttggtaatataaacca
gagcctggggagtttgtcacctgattggaatgtttaacagtattggtttctgacagcctaagtgtttgtctctgcaataggtgtgtatacctgtcaggag
gaagaacccaagagaccaactggcattcccttccttgataatttctggtattttgagtgtgtgtttctgcttagcagatatttattgagcatctactctg
tgttgtataa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 14364634 14364940 1001174 0 - pAlu18-14364531; RIP_Alu_chr18_014_01 NA NA SINE Alu Ya5 tgaattactgtttcaggtgttcatctgctacaacaaacatttatcaaacacctagtaggtataagagatcatttaaacccaccccaaaggatacaaagtt
gaggaaagcactctttgcctttgcagaaatcacaatctattatcaaagcatatgatagaaatttcaatatctaaaacacaaaatctaaagtgttaagtgc
catgagaatgatataagagtttaagaagggagagatacaacaaagtttgggcaagccagtatgtttcttgaaggaatagcacttaatttgtgatgtgaag
ataaaatctcagtaaagaaaaatggggaagaagatggtaagcctggcagaaggaatattattagcaagtgcaggaaaatgtactctaatcAAAAAGAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATCCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCTGGGCGACAGAGCGAGACTCCGTCCCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGCAagtagcctaatgtgactggatttcaatttacctttacatttttctatcatgttatttcatgcccataaattatggcaatagtc
taaatgaacttgaatatcagaccaaattgccttgtcttatgtagtaacccactcaagtttctaagcagaaaataacctgacccccattctctgagatttg
agaaaaaaattgtgtatccttcactaaagtttggaatgcattttggaaggaaagaggaaagcagaatgaatatgtcctgaccacgtgtattactcatttg
ctctgaaagccataccctgcccctttttctgctcagctctgaatgttagtctcacaattaggtttagctaagtgaaggcagaggagcaggcatccaaagg
gtggaag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 24617757 24618064 1001175 0 + pAlu18-26251650; RIP_Alu_chr18_024_03 NA NA SINE Alu Ya5 tggttcctgcttttaaaatagagggctaattttagatcataaaagtacacccctgaaaacaagatatgattttttaaatgtggcagaaatatagatataa
aactttgatgttcagtattttagactttcaaggatctcaacatttgggcaaaagatgcagaggtataaattttaaaaaatttttactttcccaaatagtt
cttaaatgtctgcttgagatgaagcatatttcagggtgtacattcagtagcttattgaaccttttaaaatttaggcatattgagtttttacaaaatttct
cagtatattaggaaatactcctctaaaggttgggaaagtagtttttagaagtagatgcaatgacgggagaagttaacagtccttcaaAAGAAAAGGCATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGAAAA
AAAAAAAAAAGAAAAGGCATTtaaaactgaaagataaacatagaaaagtactatgaagacagattttctgtcaggtgcagtggctcacacctgtaatccc
agcactttgggaggctgaggcgggtggatcacctcagatcaggagctcgagaccaacctgaccaacatagcaaaactccatctctactaaaaatacaaaa
ttagctgagcgtagtggtgcatgaccataatctcagctactcaggaggctgcggcaggagaatcaattaaacccaggaggtggaggtttcagtgagctga
gatcgcaccactgcattccagcctgggtaacaagagcaaaacacagtctcaaaaaaagacagattttctttctttttaaatactatatattattccattt
tgtatgta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 30000718 30001040 1001176 0 + pAlu18-31634611; RIP_Alu_chr18_030_01 NA NA SINE Alu Yb7 atgccactttaaacaatggatcttgtatctggaactgaagtaagtaaacagactttgtctagaagagggaaaaggagaactgaaaggtatttgtttttta
cagaaagtagataatgtgaaaatttgtctatctccattttcccaaagtcccattatcaaagatctatcatttgaactggagccaatggtaaatgtccata
aatgcaatcatgtcactaacacaatagaaaaatattaactaaagctcataaatttataacaatcatgctgtaactttaacaaatatggaataatttacat
acagttgaccttttgggtctgcaagttctgcatctgccaattcaaccaaccatggatgaataatatttgggaaaaaataaaaatatAATAGTAAAAAAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAATAGTAAAAAAAAatatatagtataacaactatttacaaagtctttatatcatattaggtattataagtaacctag
ggatgatttaaagtatacaaagggatgtgcataggttatatgcaaatactagaccattttctatcagggaattgagcatcacaggaagttcctggaccca
atccctaatggataccaagggaataccgtataacgttcagttcacctttaaaataagtcatctttgatttcttacacctcctacatatccagttactaag
tgttaattgttaaacacttctctaatctgtcgatacttgcttgtatctctggcttggattacttattcaatttactacttcttctacctgtttcatattt
tggccccttcattcttctcttag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NOL4:NM:003787:1/11
0 chr18 30915971 30916272 1001177 0 + pAlu18-32549864; RIP_Alu_chr18_030_02 NA NA SINE Alu Ya4 ggactggggagagtggccataagtatggagttctcacctgcaagtcttggggagagggtgaaatggctgaaatctggggaagaatcctggagcttctagt
ctctagtgccagggatagtgacctcagcctcaaaatgagcaacttgagaaaggggcgcattgtgtagacgtggaccgtgggtttgcgctggtccactcat
accagtatattttaccttatactaaaagcctctctgtgggctgccatacatagagttcatgtagtggcctggcctgtataactgttgatagtatgatgtg
ggtaatggttcagtagaaattctctgagaaaatggggaaagggatcagctttaggtttcttacttgcaatttaatttgacctaaaAATACATACGTTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATACATACGTTCTGaaaattagaacttaaaaatggcattctctaaagacgtttgtgcccagaaatcagcattggtttgcctaccaaattagttaagc
ttcttcttttcctggcatttaaagccttgagcaatctagctgcattccacctttccaacatttatccccacagcctccctacccataacctgtatttcct
caaacgcacgtttcacttatatgccctgattccttgtctttgcttggagtatctcctttgaaattcatatcaaatgccactttgccctattcttcctgat
cacattcaacaaaatgtgagctctctctctcttttcaatgatcagacctttacaaagccttacgctcattgagtacttgttttaagtcttcagcattcgg
ag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MAPRE2:NM:001143826:3/8
0 chr18 35315645 35315961 1001178 0 + pAlu18-36949538; RIP_Alu_chr18_035_01 NA NA SINE Alu Yb7 catataatataaactggatagataatgtagttttttttttcttaacttcctggattattaatttaaatgtgtcattttgagcagattgcgagctactaca
ataaagtttgagagcaaggctgagtaatcatattgcacaggggtctaatggtaaacagggacattgagaaggaacatggaggagcaggggccaggtttta
atggagccacttcctcagcgtgtgctactcgacctagtttctgcttcatacagtccagcttatgcaactaggtaaaaagcaggctgtggatgaaaaccag
ataatgtttctcggttgagatttccacagcaaataaattatgaaattaaaaaagataaatgctcacatatggattgtgcaactcataAAGAATCAGATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATCAGATTCatagactgttaggtttttatgcacaactatttacattcaattattcagtcaatgccatggagacagggtt
acaagattgaaagatgaatattttctgttacccgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaacataacaagaaact
gctacctggatatcaagaagcaatcatcttgcagttaatatgaaagataaaaacaaaacaaaacatatcttcatcacagctatccaagcagaacatcaat
gactaaacaaatggcaagcccaaattaaatcaaaaggcaataacaagaaaaagagtgtgggagccatagatcattgcacagggaggtcagtgagctctca
aagcctgaggagatgac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LOC647946:NR:024391:3/4
0 chr18 45273867 45274171 1001179 0 + pAlu18-46907760; RIP_Alu_chr18_045_01 NA NA SINE Alu Ya4b atttcatggcaccacccttctaggcagctcaaactctaggagagtagactccaggctaggctcacttgcttccttgacctcagtgtaggagacctcagcc
ctaagtctctcccctcgactccacttccattgctgatgctggattccatggtgtttcctcggtaattccctcccctcacatgagctttcaactgcatgct
aactcccagattaataccccagcgccacatctgtctcctgagctagaccctgatagcaaactactccctggacatcctttctgggaggtccctgaagacc
tgaggttatttgaaacctaacatgcccttaaacagaactctttgtcttctcctccgggttcctcttttatgttgcatggtgacAAGAGTAACAGACAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAGTAACAGACAATGattctataagcttactagattctaggcagtattttcagtgtttttacatgcatttcctcaagtaatccttaggacaac
tatttgtaaatgatgaagttgatctggctgctacaatgtgaagaagaaaaaaaaggaactccccggcaaatccaaggtccggcagctgggagtggcagcc
ctgggatccaaggcagccttctgtaaccaagctctgcatccctaggcgaccctgcctttctcccttccttgtttggcgacttccccatacacctaggatc
ttaaaccagaaagatgagagactcccctcttcttgtctttgcacatacaattatttaacaaaatctggattattcttttaagtggtcttcttgccctaat
tattt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 60536761 60537061 1001180 0 - pAlu18-62170652; RIP_Alu_chr18_060_01 NA NA SINE Alu Ya5 aagttaaatagccaaaaatgtgtctcaaagattaatgctcttgaaatgtaatgcagaaaaatttggacaataatggaggaaaaccttctttataaaacag
gctaaacttaaaacaaaatcagtctcacaaagttagcactaagcattaaaatcactgaggaaaacctttttgctttttttcttctccttagacagtgtca
gcagtcgcaaatcaggttagggtttagatcactgtgtgttctaaattatatttatgcccttgtaaagctgtgcaacatgttgccttgcgtaagaaatctt
taaaccacatgttctggcaagtaactgctgatatttacttccaaaattcgatctggttgctttagatacttcagcaatgacctttaaAATAATCAATTTT
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATAATCAATTTTaagactatctttcagatgcattcttgtattgtaagtcatcactggcttataccttattatgataatttcaaaacaattaccttatt
tcttccaatgtcttttgatacctaagatttctagacttaattttagaacataaatcttcataaagtacaatatattctattaaaaaaaaattccccatca
ttggaaccagcataccaaagttgcatcaagatataaagttgaatgatgtaggtaattataaagattattttcatctgaagtatccacataattgaagcaa
atgtgatttctgcatgtgggaattatctcaattttccacttcagttggttagtgtaaaaataaagaattttaactttttacatcctcaagcaattaatac
t UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 61684234 61684562 1001181 0 + pAlu18-63318127; RIP_Alu_chr18_061_01 NA NA SINE Alu Ya5 accattttagctcagaaatgtggtctctttgtgtcttatttcccaagtttttaaaagcagataatcaggaatttttatactgttttagttttgtcgccac
tattatagactctggattttcacacagtaagtgctgaagccaatgagattaagtattcacagggggtgcatgtggggcccacagcctggcatgaaaattg
atttctagtacacaaataattcattctttatgacacctcagaaagtggtgtgaatctcgtttctaggcattaggtatcaggatttgtaactcaaaccttt
taagacttctgaacaaatattactggcaaaaagcaaggtgaggaggtggagatggggaataagaacttgaaaatcaagttcaattAAGAATGAAACTATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAACAA
AAAAAAAAAAAAACAAAAAAAAAAAAAAAAAGAATGAAACTATAGgaagtacctggactttagactcttaaaaaaaaaaaaaggtacttgactacatgtt
aagtttgtgttccagtgatgtgactaattaaagctacatgtaacatgacggatggggatgcactgacattaccagaagtttaatgctggaaggcatccca
cgtatcaatgctaacccaaaccttacagagggaaaacttgaggtgtagggtaagttcgagggtttgtaggagtacatataacaagttagaggatatgacg
gggtaagattctaggtctccttattctcaatcactgatttttatttaaactgcacaagaagtacatcgtgaaaatataaatatgtttacgcctatatatt
gctgaaataattcatgttatccgaagttgt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CDH7:NM:033646:11/12
0 chr18 69424394 69424697 1001182 0 - pAlu18-71058285; RIP_Alu_chr18_069_01 NA NA SINE Alu Yc1 aaaatttagaaggcagtgtagagtattcttatatgtcccccacacagatgcccctgttgttacatcttacatctttacagtatcttcattacaagtaatc
gatcaatattgatgcattagtataactgaagttcaaagttgagttcctcagttttacctggtgtcttttttctgttccaggattccatccaggataacac
attatatttaggcatcctctctccttagtcttttcttggttgtgagggtttcccagattttctttgcttttgatgaccttgacagtttagaggaatatca
ggtatattgtaggaagcccttctactagaattaatctgacatttatctcatgattagattgagattgtatattttttgggataAAGATTATAATGTGTCA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGATTATAATGTGTCAttttcgtcacatccaatcaaagataggcactaccattgtgatttttgactgttggtgctgaccttgaacactgctggga
tggtgttgtcaagtttctccacaggttctccacaagttactcttttgttgccctttcagtcgctatgagcaacacccacttaaggagcaatgacttatgt
tctccttctttatggggaagtatctctctgaattatttggaattcttctgcatgattgatttgtctcttctcccttatgtttttcagtcaacagtgcgtg
ctatggatatttattttgtattttgtgttatgtttcaatactattttattctaaacacatatttttggttgtcatttaaaagtttatttttacacaattg
cact UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 21146493 21146802 1001183 0 + pAlu18-22780386; RIP_Alu_chr18_021_01 NA NA SINE Alu Yb7 ttacagagaaatgtttcttatattaccctttcaagatccaaactttttaattttaataagttaattaatgtaatagatcatcacttatactgggaaaaca
tattcatcagtacagacagtcctttcataaatcccaattacaatacccacaagcattcaaagagctttgagaaaataacagatctaaaaataattatttt
atatccatgttttgatagcgaattttacaaatatatcaagaagagaatggcagaccaggtactaatattcaaaaacttctgctgcagcaaaatcaatgtg
gaaataacaaagcttgtatactaggtaatgattgaactgaccttacctccaaaaccggaaaaggaagcatactcagcctatggttcAGAAGTTGGAACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAGAAGTTGGAACCAactatagatgatcactttgtctttggtaactgcatggaagaacttggtgggagccctgacagttgaacaaagtgac
acactcagccccaccactttctctaaaactgagaggagcaaagatttggtgagccgtttttcacctcatgaaataagtgatagtcaagaacagtggtctc
tgaaatacagggtacattatcgtgcaggagagaggatactctgaatagtcagaaaccaatcagaacggacaccaatcagaaatagccatccaggtactaa
ccagaccttcctgagagcaaggagataaacagtactccagtcagctgggtgggctggcttctccagccccttttatcccatctcatactaatgcagtcta
cagtgtccag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZNF521:NM:015461:3/8
0 chr18 55819850 55820148 1001184 0 - pAlu18-57453741; RIP_Alu_chr18_055_02 NA NA SINE Alu Y gagactgagggccaatattcaacacttaaagaaaagaattttcaacccagaattgcatatccagccaaactaagcttcataagcaaaggagaaataaaat
tctttccagacaagcaaatgtggaggaattttgttaccacaaggcctgcctttcaagagctcctgaaagaagcactgaatagggaaaggaaaaaccagta
tcagccactgcaaaaacacagcaaaatataaagaccaatgacactatgaagaaactgcatcaactagtgtgcaaaataaccagcagcatcgtgatgacag
gaccaaattcacacataacaatactaaccttaaatgtaaatgggctaaatgccccaattaaaagacacagactggcaaattggattAAGAGTCAAGACCC
GGCCGGGCATGATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCTAGATGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGTGGCCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGTGGAGCTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AGAGTCAAGACCCatcaatgtgctgtattcaggagacccatctcacatgcaaagacacacataggctcaaaataaagggatggaggacaatttaccaagc
aaatggaaagcaaaaaaaaagtaggggttgcaatcctagtctctgacaagacagactttacaccaacaaagaccaaaaaagacaaagaagggcattacat
aatggtaaagggaacaattaaacaagaagagctaactattctaaatatatctgcacccaacacgggagcacccagattcataaaacaagttcttagagac
ctacaaagagacttagactcccacacaatagtgggaaactttaacacctgactgtcaatattagacacatcatccagacaggaaattaacaatgatatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 74098285 74098604 1001185 0 + pAlu18-75732179; RIP_Alu_chr18_074_01 NA NA SINE Alu Yc2 ctgtcaattcagatcgcagtcaacccattcaaaatacatgcaataagcaagttctcagttgaaattgacaatttctagtgcctattttgctaaattgtga
tcttcgttccagagcataacagttatctgttatggagtgtggcggtctcattaatttatgcttagaactgctcctgacagtggattgtctttggcttcca
agaacctttcattgactgttttaagctttaaacaaaaatactaccaaggtaatgtgtgtcatctactctgtactctccattgaccctgtttcttatactt
tctagagggaatgaaccaaagcatatttacaaaagggtctctatcaaggccggggtggggggggacaagagagaaagaatagcttagaAATTAAGTCCCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAAATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATTAAGTCCCTtcaaattaatttgtgcagacactttggctttggatcagattatcaaagtgtttagcacttacggctca
gcttccaaaatgtgcatgcccaatttaattaggggtaattttcattcattacgcactaaaggctggttaggctggtggtggctcaaaactctattctaac
agtgatattatatgaaaagcccataatgtcacaatgagttcactcaaagaagagctgccacctaggtaagtgaggagacagtagcagcccctccctggcc
gacccatccctgggctgaagaatgtaaaccatcgggattggatctgacatagcaagtcaaggcctctgcgtccccagcatccctggcgtgcgcgtctctg
tcgattagagaccaaatctg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 53496938 53497152 1001186 0 + pAlu18-55130833; RIP_Alu_chr18_053_03 NA NA SINE Alu Ya3 cagggcacggtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacaaggtcaggagtttgagaccggcctggccaacatagtg
aaaccccgtctctactaaaaatgtaaaaaattagccacgtgtggtggtatgcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcataa
acccgggaggcagaggttgcagtgaaccgagatcacaccattgcactccagcccaggcgatagttcgagattctatctcaaaaaaaaaaaaaGAAGAGAA
AAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCGATTCCCAGCCAATGCAGCAGGCTGACCTTT
TGTCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGC
TGAGGCAGGAGAATCGCATAAACCCGGGAGGCAGAGGTTGCAGTGAACCGAGATCACACCATTGCACTCCAGCCCAGGCGATAGTTCGAGATTCTATCTC
AAAAAAAAAAAAAAAGAAGAGAAAAGAAAAGAGTGTGGTGTTGATGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAATTGACCCGACTTCAATTCCCA
GCCAACGCAGCAGGCTGACCTTTcgtcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaaaattagccaggcatggtggcgggtgcct
gtagtcccagctacttgggaggctgaggcaggagaatgcatgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgctctccagcctggg
caacagagcaagactctgtctcaaaaaaaaaaaagaataaaaaagaaaagaaaaactaactattaagttctgtgttcactacctggatgatgggatcaat
tgtaccccaaacttc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ATP8B1:NM:005603:14/27
0 chr19 8420426 8420718 1001187 0 - pAlu19-8409311; RIP_Alu_chr19_008_01 NA NA SINE Alu Ya5 tctcctgagggacaaggacccctctgcccgtgtgagaaccatcccttatataaagtgattcttcacagaaatccctcaagtcctgcgctgctctaatgca
tgtaaggtgtggagagcactattcacagcaccattccagctccaaggccaccactgaactacccacatgactcaagctctttctgtctctagcgctttac
cagcaaaaccagcgcaacctgtatgcatggtagctcagagggacactgtgacaatcaacaaagaatggcaaaacaaaaagcagctcatctagggaagcag
tactgcatgtggctaagagctggggtcaccatgtcgtcactaggcctcggtcctatggaggctactacctacacgcttacagctttAAAAGAGACTCTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGCGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAG
ACTCTTAGgcacacagtgaggcaatgatgtatttttctaccaataattttattgagaagggtagagagggggactgattcactcctagccttctactgtt
caggctttaaaactagcaaaccagagccaaggctgagaaaacctaggcatcataatcattacagactagcaaagggacaatttagctttcaaccctatga
ctgcaaaatatggtaatggggaagtccattggagaaccccccctcccaaaaaaacaagcaagctaatctttgcaggctagtatctctttccctaaccaga
ataaaatcaaagagctgagtgaaagcaaaggcctggcagcatgcattcaaataatccaaaaccctgtcttctaatcttgagctcacaatctgac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:HNRNPM:NM:005968:1/16
0 chr19 19828363 19828664 1001188 0 - pAlu19-19812470; RIP_Alu_chr19_019_01 NA NA SINE Alu Y caaaataatctggctcagatggagatctgtttttctctccaatgctttgggtgtctgtttcaaaagccctattcatatccgatggtgtctacatgaggtg
gactttcatagcgagaacttttagagctatttctatctggacttatgctggaaattcagcagtattttttccatgtccctactataggtagaaactgagg
ctgaaacactaatcacattctcatgattgtgaaggtgtaattctacccaggaggcctgcaggctctcctcctgcagctcaggcctcactctctgatgtga
cactagagtgctgctgtggcaaatggggttcatataaaatgtgagctgtgctccaggctgtgcctcagtggcagatgttataggtcaagAGAGGACACTA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAATATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCCAGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCATGAACCCAGGAGGCGGAGCTTGGAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGGAAGACTCCGTCTCAAAAAAAAAAAAAA
AAAGAGGCCACTAGgtaaccaggagaaagcaagcaggagtgctgtaacccaatgccagggagtacagagccactgctctaaaatgtaaatagccaaaaag
atagaaccctattcaaccatttttgtagcacaatgaaagcctaccttcagaaggcacctggattaaagctactaaactacttcctgttatgaagatgtga
aaagtttgtcattgaatataagcaattagcatacacagatggcctcttcaatctgttcataggatgaactatgtatgacatggcgctggaaattcttcta
tttgtgaactaattatggtgaccatctttctgtctttgcgatcccttaagcagactgatgatgatgcatgtcacaattaagttcaattgtgtaataaaac
cat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 26362410 26362722 1001189 0 - pAlu1-25722767; RIP_Alu_chr1_026_01 NA NA SINE Alu Ya5 tcgacctcgggcggggtccagctggaggggtcctcacctcatcaaacatacaaggcgaaaatgaccagagtcagcccgcatatcaggatgggttttttat
ttaaggtacaactttccaggaagttggagagctccagaggactgcgtccatcgccctctccagcctcatttaattcaacaaactgtgcctgtggccctac
tatgtgcgccgtccctgtactaggaaaaaggtcaaagattaactagagaacccagagtaccagcgggtcccacaaaaggtgacaaattgaggcccaaaaa
taggactgtacttgggagctcagagcaggtgaggctgactgggggcattcaggacggcttcctggaggagaatatacgttatctccgagaaggaAGAAGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAGAAGGaagagcagagagaaaaggaacggcaacccaggcaaaggaaggaggtgcatgaaggatgcaggcttggaggtgcgaacctgt
gatgaaaataggcgaacttgtgtgtccttgcaggaaagggaggcagtggcaggagcctgccggctggcaggaaaggtttccttcttttctttttttattt
ttatttttattttttgagacggagtctggccctgttgcccaggctggagtgcaatggctcgatctcggctcactgcaacctccgcctctgggattcaagc
gattctcctgcctcagcctcccgagtagctgggattacaggcgcgcgcctccaagctcagctaatttttgtatttttagtagagcccatgttggccaggc
tggtctcgaactc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 67786462 67786463 1001190 0 - pAlu1-45077537; RIP_Alu_chr1_067_01 NA NA SINE Alu Yd8 gcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaaatattttcaacccagaatttcatatccagccaaactaagct
tcaaaagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcttgaaggaagcact
aaacatggaaaggaacaacaggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgaggctaggaagaaactgcatcaactaacgagcaaaa
taaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaaAAGACACAGACTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGAAGGC
GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAACAAACAAACAAACAAACAAACAAAC
AAAAAGACACAGACTGGcaaattggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctcaaa
ataaagggatggaggaagatctaccaagcaaatggaaaacacaaaaaggcaggagttgcaatcctagtctctgataaaacagactttaaaccaacaaagg
tcaaaagagacaaagaaggccattacatcatggtaaagggatcaattcaacaagaagagctaactatcctaaatatagatgcacccaatacaggagcacc
cagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagacttcaacaccccactgtcaactttagacaca
tca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 46138708 46139023 1001191 0 - pAlu1-45752472; RIP_Alu_chr1_046_01 NA NA SINE Alu Yb7 acatgatggattaaaaatttaaatttaagacctgaaactataaaaaccctaaaagaatacctaggaaaaactcttatggacattggcctaggcaaataat
ttatgactaagacctcaaaaacaaatatgaccaaaacgaaaatggacaaatgagacttaattaaactaaagagcttctgtacagcacaagaaacaatcaa
cagaataaaaagacaacccatagaatgggagaaaatatctgccaactacgcatccaacaaaggactaatatccagaatctataaggaacttaaatcgtaa
gaaaaaaacaaataaatctgctaaaaagtaggcaatagaaacgaacagacacaaaagaagacaagtgaccaacaaactcatgaaaaaAATATCCAACATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATATCCAACATCactaatcatcagagaaatgaaaattaaaccacaataagataccatcttataccagtcagaatggaaaatga
cagatgttggtgaggatgcagagaaaagggaatgcttatatactgttggtgggaatgtaaattagttcaacccctacagaaaatagtatagtgatttcca
cagaactaaaaatagaactaccatttgatctagcaatcccactactggctatctacccaagggtaaatcttttttttttttttttttttttgagagagag
agagtctcgctctgtcgcccaggctggagtgcagtggcaccatctcggctcactgcaaccactggctcccaggtacaagcaattcttctgcctcagcctc
ccaagcatctgggact UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MAST2:NM:015112:4/29
0 chr1 57015214 57015534 1001192 0 + pAlu1-56600233; RIP_Alu_chr1_056_02 NA NA SINE Alu Ya5 aacagcatgaaacaaaatgaccacgagccctcattttgatcactagtcaaattttaaaatatctttgtttcaaatttcagagtgtcttctttgaggtgca
ctaacatctgaccccatttattttacggagagggaagtgaggtcaccctctgaactagtggtaggcttttaaataggagcctggtctcctgactgcctgt
tctgccacctacagcattcgaccttgatacagacaaacactgctattacaaacaaacaacaaatctctgccatttattaagagcttacaacatcggaatt
ccactttgctgaattagagatatttatctcaatcctcacaacatccctgggggaaggatttgatttcactatttcctatattAGAAAATAGAAGGCCCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGG
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAAAATAGAAGGCCCAGagatatcaaataactttcccaggatcacacagctagtgtgtggagctcaaactatgaatcc
aaggttatctgactcctaaatcaatgcccttaacttcatgtaacatactccctggatcttctaatttttaattcattcaatttaaacacactttaattat
gcagctggtaagaaagaaatattagaccatctctctgcttttgaagaatttataatttagtcagggaaatgagatacacccagggaaacagaaaatcaca
aaaatagactggatatacttgagtcttaagccgagtgctgtctaagtccattctattcttcagccaacatttattgaacaactattaaatgctgtatgcc
cccttccccatatacacctta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C1orf168:NM:001004303:4/20
0 chr1 93131499 93131500 1001193 0 - pAlu1-58314076; RIP_Alu_chr1_089_01 NA NA SINE Alu Yc2 atacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttgattggaacatttagcccatttacatttaaggttaatattgtta
tgtgtgaatttgatcctgtcattatgatgttagctggttattttgctcgtgagttgatgcagtttcttcctagccttgatggtctttacaatttggcatg
tttttgctgcggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctgagcatt
tgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagtATGTTGA
AGGGCCGGGTGCAGTGGTTCACGCCTGTAATCTCAGCACTTTGGGAGGCTGTGGTGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAT
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTTAGCCGGGCTTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATG
GTGTGAACCCAGGAGGCAGAGCTTGCTGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGAGAGCGAGAGTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAATGTTGActattggcccccactctcttctggcttgtagagtttctgctgagagatccgctgttagtctgatgggcttccctttgt
gggtaacccgacctttctctctagctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcga
ggagtatctttgtggcattctctgtatttcctgaatttgaatgttggcctgccttgctagattggggaagttctcttggataatatcctgcagagtgttt
tccaacttggttccattctccctgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcat
ttctttttattcttt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FAM69A:NM:001006605:1/5
0 chr1 66973811 66974124 1001194 0 + pAlu1-66558828; RIP_Alu_chr1_066_01 NA NA SINE Alu Yb7 tctggtaaccaccattctactctctaattctataagatcaacttttatttttatgttattttattttattttattttattttatttagttttttgagatg
aagtctccctctgttgcccaagctggagtgcagtggcacgatctcggctaatagcaacatccacatcctgggttcaagcgatcctcctgcctcagcctcc
caagtagctgggattacaggcatgcaccatcatcctggctaatttttgtattttcgatagagacggggtttcaccatgttggccaggctggtcttgaact
cccagcctcagatgatccccgttccttggcctcccaaagtgccactgtgcccagccaagatcaacttttaaatattccacatAAGAGTGAGATCGTGTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAGTGAGATCGTGTGGtattggtctttctgtgcctggctcatttcatttaccacgtttttaatgcattataattttttattaaa
tatgttcagattatttttcttcaaatgaaggaagttgtactttaataaaaatcaggacatctcaaacttgactgtatttctcaatcaaatgctggttctg
aattgatgctaaaaagaaatatatgtgtatacatatttaaataatataaatatttatttataatatttacatatacaacctagatacatataaaacctat
acaatctataacatataaaataacacattatattcataaatataaatatttatacaaatattttaaatataaatatttatacaaatattttaaatataaa
tatttatacaaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SGIP1:NM:032291:21/25
0 chr1 86178394 86178709 1001195 0 + pAlu1-85698023; RIP_Alu_chr1_086_02 NA NA SINE Alu Yc1 tatttctgtttcattatgtgcagtgtgcttatattatgtacttgcagaattttactatgccagtatctagtgcctaaggagttcaaataaaccagatgag
gaaatgatgtagcacagagattatactgaatcatatctgttactgaacataggatatatactgccctcttaatttcttttctggcatgaagtagtagtat
aaataaataaaaataatgactactcacctgtgctatctacttactgagtcagtctttgaaactaagactgtgcctagtatgtcttattaaggtttccaaa
agttgaagataaactatctacaaacactggggatgaattgaagaaaaagcaattttatacaaaccctgcattcattaacacttttaaaAAGTGCCATAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGTGCCATAAGatatattcagccatttatttagtcaagaaacatatttgagagcataatacatgcaaggcatgctaaataatg
taaaatgttttatattatcgattacatttagaatataagacaagcacttcatgattatggaggttcctgattagacaatagtctactttggagtcacagt
tcctccacttcagacatttggatacataaagttttataaaactgaatggtctgcttagtatccaaatagggatttcagcttctaacgtttccctaacaac
tatttgactcttggatcaaaaatgtagtaataaaataaaagttcagaacaaagttttgcccgaggaaggtctggcagtgatcaagagaatatgcctggaa
tgtctactcaacagat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:COL24A1:NM:152890:24/60
0 chr1 91397376 91397644 1001196 0 + pAlu1-90961213; RIP_Alu_chr1_091_01 NA NA SINE Alu Ya5a2 tatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacttcgtgatccgcccacctcggcctcccaaagtgctgggatta
caggcgcaagccactgtgcccagccaaagtttcccctttttataaggatgccttattttggattagggcttaccgtaagatctcaacataactaattaca
atggcagcaaccctatttccaagtacggtcccattctgggggttaggacaccgatatatgaattgttgggggacatgattcaactcctaacaagggactt
tgcagaagattaaagttatagctttgagatgggaaaattattctgaattatcctggggggcccaatttagttacttgagtccttaaAAGTGGAGAATCTT
CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACGAAAAATTAG
CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC
CCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGTGGAGAATCTTtcccatctgcagtcagg
gagagattggtgacgatggaagggtcagagaaatgcaacattgccagctttgaagatggaggaaggtgccatgagccaagaaatgatggtcgcctcagag
gctagaaaaggcaaggaagcaggttctcccctgaagcctccagaaaggaatcagacgccgtgttcctagttcagtggcctgtgttggatgtctgaactac
agttgtaagatcatacatttgtgttattttaagccactacgtttgtagtaatttgttataacagccatagaaaactactaatacaacctcccccaaccac
agctcctaagtttgccatgtgatctctcatcccccgataaataatgcttctatgctgggagtaagtcac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 14585345 14585346 1001197 0 - pAlu1-93327698; RIP_Alu_chr1_014_01 NA NA SINE Alu Ya5 agtgggggccaatattcaacattcttaaagaaaagaattttccaccccgaatttcatatccagccaaactaagcttcataagtgaaggagaaataaacta
ctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagtgctaaacatggaaaggaacaactggtac
cagccactgcaaaatcatgccaaaatgtaaagaccattgagactaggaagaaactgcatcaactaacgagcaaaataaccagctaacatcatcatgacag
gatcaaattcacacataacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcaaattggataAAGAGTCAAGACCC
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGTCAAGACCCatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaaaggatggaggaagatctacca
agcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattac
atcatggtaaagggatcaattcaacaagaagagctaactatcctaaaaatatatgtacccaatacaggagcacccagattcataaagcaagtcctgagtg
acctacaaagagacttagactcccacacattaataatgggagattttaacaccccactgtcaacatcagacagatcaacgagacagaaagtcaacaagga
ta Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 156896012 156896323 1001198 0 - pAlu1-155407159; RIP_Alu_chr1_155_02 NA NA SINE Alu Yb7 tctgtttcttatatttaaagtgagattcttataaatagcatataatcaggccttgtttttattctattcaatctggtaatttttcttttttaattgtgat
atttagacaatttacacttagtgcaatcatcaatatggtttattttaaatctggcaagttgctatgttttttctttttatctatcactttatgtctcctt
tagatcaattttgtatttattgtgattccatcttatcttcaaattggcctattagctacaattgctgttttgtgtttgtgtgtgtatgtttattatagca
cagtgattttgccattgtgatttggagtccttttagggtctctgacacactcttagtggattcacaaagttaaaatattttcatAATAATGCTAAGACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAATAATGCTAAGACTAttattttcttttacagacttattcttttataagcatagaatggagtttcccagagcctagagatgggtgatg
atgtcactgttctgtctaatggagtatatgcttgtacattcttttctttcaaagcttcttgttttgatttcttatatgggaactattaatcagtctaact
atataagcaaaagatattttgcattcttaataatttttaaaattgtaaagggatcccaaaagcacaaatttgaaagccactattccaggaattaaaatat
agatttttttaatctatcatagtctaatttcaaataatattatgcatttcatgtttaatataagattcttaaattgatacttccatttgttttcaccctt
gtgctattggtg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SPTA1:NM:003126:18/52
0 chr1 159201660 159201962 1001199 0 + pAlu1-157712809; RIP_Alu_chr1_157_01 NA NA SINE Alu Ya4 cagcctgggcaacagagggagactccatctcaaacagaaaaaaaaacaaaaatgttttgactgcagttcaaaaattgtttcaaaactttgttgcaatttt
aaaaatatttctcaaaattaaaatgtttggaagactgcccaaacaatataaacaaattcaattgaaacatgcatttaacttttataaacttatatttatg
actcaacgacaaaaaagcaagcaacccaattaaaaatttgggcaaagtaggacttacagtatgatgttgggaaaaaaaactggacaaaggacttggatag
acatttcttcaaagaaggtatacgaatgggcaacaagcacatgaaaagatattcaacaccactcatcattagggaaatgcaaatcaaAACTACAGTGAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACTACAGTGAAAtaccacttcacaccctttagtatggttattaccacggggaccgagggaggtgaacagaaaacaagaaatgttgatatgaatggg
ccgggcacgatggctcatgcctgtaatcccaacactttaggaggccgaagtgggtggatcacttgaggtcaggagttcgagaccagcctggccaatatgt
tgaaaccccgtctctactaaaaacacacaaaaatgtgctgggtatggtggtgtgcacctgtaatctcagctactcgggagtctgaggcagaagaatcgct
tgaacccaggaggcagaggttgcagtgagccaagatcacaccattgcactccagcctgtgcgacaagagcaaaactccatctcaaaaaaaaaaaaaaaaa
aga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 162787548 162787860 1001200 0 - pAlu1-161216853; RIP_Alu_chr1_161_01 NA NA SINE Alu Sp ggtgctgctgaaaagatacctgaaaatatggaagtgactttggaactgggtaacaggcagaggatggaacagttgggagggctcagaagaagacaggaaa
atgtgggaaagtttggaacttcctagagacttgttgaatggcttcgaccaaaagcctgatagtgatatatacaatgaagtccaggctgaggtggattcag
atggagatgaggaacttgttggaaactggaacaaaggtgactcttgttatagtttagcaaagagactagcagcattttgtccctgccctagaagtttgtg
gaactttggccctgagagagatgatttagggtatctggtggcagaaatttttaagcagcaaagcattcaagaggtgacttgggtactgttaAAGGCATTC
AGTTTTGGTGGGGTGTGGTGGCACACACCTGCAATTCCAGCACTTAGGGAGGCCGAGGCGGGTGAATCACCTGAGGTTGGGAGTTCGAGACCAGCCTAAC
CAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGTCTTGGTGTCACATGCCTGTAATCTCAGCTGCTCAGGAGGCTGAGTCAGGAGAA
TCTCTTGAACCCAGGAGGTGGAGGTTGTGGTGAGCTGAGATGGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCTTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGGCATTCggttttaaaagggaagcagagcataaaagttcagaaaatttgcaccctgacaatgtgatagaaaagaaaaacccattt
tctggggagaaattcaagctggctgcagaaatttgcataagtaacgaagagccaaatgtcaatccccaagacaatgggaaaaatgtctccagggcatgtc
agaggttttcacagcagcccctcacatcacaggccagaggcctaggagaaaatggtttcgtgggctgggcctggggtcctcgagcggtgtgcagtctatg
gacttggtgcgccacatcatagctactccagccatgactaaaaggggtcaagatacagcttgggcttttgcttcagtggtggaaaccccaagccttggca
gcttccatatgat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 178559626 178559936 1001201 0 - pAlu1-176813158; RIP_Alu_chr1_177_02 NA NA SINE Alu Yb7 actaggataacttttcaaaacatgggacaataagacataagcaacaaaaagttaaaaagtcagagaattaagtgaaaatgtttttattagtttttttttg
cctatttgtttatgcaatcagtgttaagttgtcatcagcttaataataatgggttataagatacttgcaagcctcatgataacctcaaatcaaaaaacat
atatacaaaaataaaaagcaatacattaaaatataccaacagagaaaactaccttcactaaaggaagacaggaagcaaggaaagaagaaagagaagacca
gaaaacaaataacagaatggcagaagcaagtccttacctaatcaataatgacattgaatgtaaatggactaaaaactctcctatcaaAAGACATAGAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGACATAGAGTAactgagtggattaaaaaatcaagacccaatgatctgttgcctacaagagacacacttcacctataaagttacacac
agactgaaaataaaggaatgcaaaaagatattccatcccagtggaaacaaaaaaagagcaggagtagctatagttatatcagacaaaatagatttcaaga
caaaaactataagaagagacaaggtcattatataatgataaaggggtcaattcagcaaaaggatataataattataaatatatatgcatccaacactgaa
gcacccagatacataaaggaaatattattagaggtaaagagagagagagaccccaatacaatagtagctggagactccaacataccactgtcagcattgg
acagatctttc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ACBD6:NM:032360:6/8
0 chr1 223828938 223829243 1001202 0 + pAlu1-222169659; RIP_Alu_chr1_222_01 NA NA SINE Alu Yc1 ttgtgttaggtttcaactcgattccacaaatattgttcacatttataacacaggtcctggcatatagtaaaagtgggcgagaccagctcagttatataag
attgtgggccaggcgcggtggctcacacctgtaatcccagcacattgagaggctgaggtgagtggatcacctgaggtcaggagttcgagaccagcctggc
caacatggcaaaatcccatctctactaaaaataccaaaaattagccaggcatggtgcctcgtgcctgtagtcccagctacttgggaggctgagacatgag
attcgcttgaacctgggaggcagaggttgccgtgagccaacagtacgccactgcactccagcctgggtgacaaagtgagactctgtctccaaAATATATA
AAAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGGT
AACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATATATAtatataaaaaaaaaaaaagattgtgcattcagatacgaataataaacatattttctcaaataggaaagtgaacaataaatagcatg
tgctatatactgtgttaagcactagacgagctttttcctagtccatagcaccaacaccaccactctgaaatcacaacatcctacaaatgtagggttcact
ccagaatcctccgtgaccctcactgctccacacacacagtcaccaagccctgtcaattctatttccaaaagactcctacaatgcatcagtaccctttgtt
cacaatgctcaatgctcaaaagctttaatttgggccctccctagttcctcaactggcttatttcaaaaatctccttacctgtatctctcactgcaatctt
attctt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ENAH:NM:018212:1/14
0 chr1 226638797 226639112 1001203 0 - pAlu1-224957620; RIP_Alu_chr1_224_02 NA NA SINE Alu Ya5 cctatcttatctcttagcccagttgcccaaggtaccagtatccttatctgcaggtgagcatgaggacctctgtgttgaagacacatcaacctttggatac
agaatgcagagtctcaggagataggccaattatttgcattttgaatgctatctgtttctataccatatggtagtaaaaatttgcatggtatgattttaaa
aacttgaatttttaacttaatgttctatgttctgtagtaatctcattttcatgttaccaaaggaaacctgttatgaccagaataaattattttcccaaca
ttgaactaagaattcctagagctggggaaataaaggaatgtcctttgctgccagcctccttccttcctccttaggatacctctttaaAATTAATTATTAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTAATTATTAGtttggttttcccatttaatagagaaattatttaggatgttttctaaaatgtccaagtagctagctataact
tgctgtttattctttgattgacagtgactaatgtcatttcacagtggccaggaaatgtgggctgtatgatctccactttgagaggattttgacccaatgc
ctgggtcatttatgtggctggcctctggatatctgaaagtaatatgaatccttcatttgctggtttcaaagtactatctacctatcttcctgtctatcac
ataaatgtttccagtgatgccatcaatagttacagaaattgattgatttttatatatctgacctattgatttctaaacacaatatattaaaatcttctac
tatgattaccaatgta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 226881438 226881764 1001204 0 - pAlu1-225186851; RIP_Alu_chr1_225_01 NA NA SINE Alu Ya4b tccttgaggatggatgatgcaccccttaccatcccattaaaacctaatcacccttaccccgatcaatgccagtatcccatcccaccgcatgctttaaaag
gattaaagcctgttatcacttatctgttgtagcatggccttttaaagcctataaactctccttacaattcccccattttacctgtccaaaaactggacaa
gccttacattttagttcaggatctgcgccttatcaacaaaattgtcttgcctatccaccccatggtgccaaacccatatattctcctatcctcaatacct
ccctccacaacccattattctgttctagataaacctagctgaccccataaatcctaaatcctttccacactcccctgtccattccttaaaaAACAGCCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCCTaaaatctgctcccacactagttctccctaactcatcccaacctttttcattacacacagccgaa
gtgcagggctatgtggttggaattcttacacaagagccaggaccacgccctgtagcctttctgtccaaataacttgaccttactgttttagcctagccct
catgtctgcgtggggtggctgccactgccttaatacttttagagaccctcaaaatcacaaactatgctcaactcactctctacagttctcataacttcca
aaatctattttcttcctcacacctgatgcatatactttctgccctcctccactacctctcagcaagccaaactcattgccttaactcgagccctcactct
tgcaaaaggactacgtatcaatattta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 233614164 233614165 1001205 0 - pAlu1-42180814; RIP_Alu_chr1_105_02 NA NA SINE Alu Yg6 acctctacgcaaataaactagaaaatctagaagaaatggataaattcctcaacacgtacactctcccaagactaaaccaggaagaaattgaatctctgaa
tagaccaataacaggatctgaaattgtggcaataatcagtaatttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaga
tacaaggaggaactggtaccattccttctgaaactattccaatcaataggaaaagagggaatcctccctaactcattttatgaggccagcatcatcctga
taccaaagccgggcagagacacaaccaaaaaagagaatttttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaAATACTGGCAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACAGGGGAGGCTGAGGCAGGAGAATGGCATG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATACTGGCAAACCGgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaat
atattcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattc
aacaactcttcatgctaaaaactctccatctggtatcctttctcttcagcctaacggtatcatctgacagttcttgtagtgtaggtttgcaggcaacaaa
ttctataggcctttgttcctctgaaaatatctttatttcatcctcagtatacttttttctgggtatggattcctgggtttgcagggtattcccacttgtc
cgagttttc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TBCE:NM:001079515:2/17
0 chr1 62163191 62163526 1001206 0 + pAlu1-61748210; RIP_Alu_chr1_062_02 NA NA SINE Alu Yd2 tggtttttgtgaaaaagagattcttaaaattattattaaaaggcttgtacatttaaagtagtataactttagtcaactattttctggaaactctgggaat
attacatttaaataatgctcacttatataaaccaatcagaaagagattctttattttgagagatttatatctaatttattaatatgctctgaaggtagga
aaatatttcacactcaaaatgaaaggtaaggacttttctttctccagtgcagatacacaatgtattctgcttctgtcctgcagctatagccatatgtcaa
atgtagacataggaatgtaaaaccctactggttttacgttaaagagctgttctttccagtaggacccaagacatgttcttgtacaaaAAGACAGACAGGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAGACAGGCaaacaagaagactaaaaaatgcattctctgttgtctctcaatcaatcgaga
atagatctttatagaagcagcataatatagattctcatcccaacaaataactctaaatggtcagaccataaaaccaaacttcatttattcctactatcag
cgaggaattacaagtacacatcagaaccaaacttggtctcatatcagaaacaaaatcatagaactggaaataaaaatcagagaaactgtcaaaaaagcaa
agtttgttgccacttggaattaactgtgggtgccaaaaaatcatgtaaatgggcttaaacagctcatgaattgcatctctgaggcatcacaatttaattg
gttctggtaggtgagtctgcttgagcatctctgtgg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:INADL:NM:176877:26/43
0 chr1 69579593 69579899 1001207 0 + pAlu1-69191628; RIP_Alu_chr1_069_01 NA NA SINE Alu Ya5 ccaatgcccgtacttccattgtatctagggagtaactagcttgcttttgattttacaggctcgtaggcagaaggggcttgctttgtctcagatgagactt
cagactatggacttttgagttaatgctgaaatgaattaagattttgagggactgttgggaaggcatgattagttttgaaatgtgaggacatgagatttgg
gaggggccgggggcagaatcatatggtttggttgtgtccccatccaaatctcatcttgaattgtagctcccataattcccacatgtcatgggagacatct
ggtgggaagtaattgaatcacgggaatgggtctttcccttgctgttctcatgatagtgaataagtttcatgagatctgatggttttatAAAGGGGAGTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGGGGAGTTCccctgaacacactctcttgcctgacaccatgtaaaatgtgactttgttcctccttcaccttctgccataattgtgagacct
caccagccatgtggaattgtgagtcagttaaacctttttcctttataaattacccagtcttgaacatgtctttattagcagcgtgagaacagtctaatac
agttggtgtcatgcatggagctcatctgtgatcccctggacactgcaaaggaaataagactcattccagattccgagtattagtggaaagtagctcctaa
gacactaatagatttttttttcctctaaattctcagcaattgtctgccatggatgacacttgaagtttaaatgtttcacagtctgatgccaagtagagct
ggtaaag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 117892575 117892781 1001208 0 + pAlu1-117238000; RIP_Alu_chr1_117_01 NA NA SINE Alu Ya5a2 agaccaacccctgcaccaaaaaaaaaaaaaagttataagagcaagacaaaagacaaaaataaatctctttgaagacattacatagctattaatagataca
gagtcagttagagttaggtggccagacttgagtggcgagaatatcagagcaaataaatacattttgagataaacccagaattctgcagggctttttcctt
gaggcatttggcaatttaaaagcagcacagggctgagaagctaggaagctgggcagcagcagacacttaaataaggctagaaagctgagcagagctttca
gcagtctaacaagcctaaggaaacaaaaattagagttcagggttcaccaagaaaaggccccagtaaacaatctagacctcccattAAGACACCCAGAAGC
CTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAGACACCCAGAAGCtatactctaagaggtaaggtaaaccagaaataaaaggtgttcacaaaagactaaaacctagtcctgaaccagtgtaat
cccaatgtgattaataggggttaatatgatctgctccgtctctacctccctaccagagagttatacagcagaagagagaattcatcaccaggaagacaga
ctaactgaaaatatccatcctaaagttcagggagaagggaaaaaaagagatggaaagtacagaaaagaccatgagacatatgtgatacagtgatgaggtc
taatatataacaatatgtaatagtctcagaaaaacaaaaagagaatggggcagaagcaatattttaagagctactaaccaagaattttctaaaactgtga
aaaaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 4205000 4205001 1001209 0 - pAlu1-181289027; RIP_Alu_chr1_004_01 NA NA SINE Alu Yc1 taggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcac
agcagaagaaagtaccaccagagtgaacaggcaacctacaaaatgggagaaaattttcacctactcatctgacaaagagctaatatccagaatccacaat
gaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaagggaagacattcatgcagcca
aaaaacacatgaaaaaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttAGAATGGCAATCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGGCAATCATtaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttactttgttggtgggactgtaa
actagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatataccca
aaggactataaatcatgctgctataaagacacatgcacacatatgtttattgtggcactattcacaatagcaaagtcttggaaccaacccaaatgtccaa
caatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgtagccataaaaaatgatgagttcatgtcctttgtagggacatggat
gaaattgg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 2812017 2812321 1001210 0 + pAlu20-2811916; RIP_Alu_chr20_002_02 NA NA SINE Alu Y aacactttttttttttttttttttttttgagacaggttctcactctgtatgtagcccaggctggagcgcagtggcatgatcatggctcattgcagccttg
acctcctgggctcgggtgatcctcccacctcagcctcctgagtagctgggactacaggcatgcaccaccatgcccagctaattttgcaaccagtaggaat
aatgcaaatagtacaaaatctgaaaaatacctaaatctgaaacacttctggtcccaagcatttcagataaggaatactcaacctgaacctagcaaatatc
atttgaaaaaataatatcttaatctgtctcttcaagtaaaagtattatttaaatagtgagtgaaaaaggaactacttcttttcttagAAAGAAATGTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAtgcaatggtagagcgttttcctcgttggaattttttttacatgtaatcattataagctataacttacatattataaaattctcctttt
taaaatgtacagttctgtggttttttgtatatgcatagagttgtgcagcttttgccactgtctagtttaagaacatttcatcaccccaaaagagaccctg
cacccattagcctcacttcccattctctcctccctccagtccctggcaactactaatcttcctgtttctttggatttgcctattctggacatttcatata
aatgaaatcatacaatatgtgaccttttgtagctggcttcttttacttagcataatgtttctggggttcattcatgttgtatcatgtatcagtacttca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PTPRA:NM:080840:1/23
0 chr20 17051451 17051774 1001211 0 - pAlu20-17051362; RIP_Alu_chr20_017_01 NA NA SINE Alu Ya5 ggctgcagtgagctatggtcacaccactgcactgtagcctaggtgacaaagtgagacttgtctatttaaagaaagagagatgaagaatcttggaaaaagg
aatcaatgaaaatggaataaaatatttcatttttattattctaaaatgtaactgtataatttaataatagtaagaatgtactgggtaattataacataga
ataaaagaaattaaatgacagcaacatcacaagggatgggagggagaaattgggaatattttttcaatgtacctgcaccactcataaagcagaagcatgt
aatttgaaggtggaatcagattagctaaaaatgtatattgtaagctttagggcaaccacagtttttttttttttttttttttttaAAGAAGTGAATAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTGAATAAGAGgaggagataaaatggaacaatacagagacttaattaaaacaacggaaagcataaaacaac
tacaaacatggttgatgttaaagcaaatatatgaataatcccttggaatgagtagtctaaatataccagctaaaagacagagattgtcagataaaaatgc
aagacccaagtatatgttgtttacataaaattcactttaaatataaagactccgataagctaaaattaaagaaatggacaatggagaaagagaaaccata
ctaatcgaaagaaaactggaatgaaaatattaacttcagccaaagcagacttcaaaacaaggagaattgtcagagataaagagcagcactgggtaattat
gaatgggtaaatttttgaagaagat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 35042238 35042539 1001212 0 + pAlu20-36247152; RIP_Alu_chr20_035_02 NA NA SINE Alu Ya1 actctgttgcccaggccggagtgcagtggcactatcttggctcactgcaacctccgcctccgaggttcaaggaattctgagtcagcctgccgagtagctg
ggattataggtgtgcgacaccatgcccggctaatttttgtatttttagtaagatggggtttcaccatgttggccaggctggtctggaagtcctgacttca
agtgatccacacacctcagcctctcaaagtgctgggattacaggcgtgagccaccctgcctggccgcaagcatactttttataataattatatcttacat
gtattcagcattttctatgtgccaggctcaattctcataacactctataataaagccattatttcaattttacagatgaagaaatTAAAGCTCAAGAGTT
GGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGACGTCAGCAGATCGAGACCATCCTGGGTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAACCGGGCGTGGTGGTGAGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCATGAGAATGGC
GTGAACCCAGGAGGCGGAGCTTGCAGTGATCCCAGATCACGCCACTGTACTCCAGCCTGGGCGACAGGCGAAACTCAGTCTCAAAATAAATAAATAAATA
AATAAAGCTCAAGAGTTtttaagtaacttgcccaagttcacattaggattcaaagccaagcgctgtggtttcacaggcccactttttttttttttttttt
gagacagcatttcactctggcacccaggctggtgtgcagtagtgcaatcatagctcattgcagcctcaacctcctgggctcaagtgatcctcccacctca
gcctcctgagtagctgggaccacaggcatgcaccgccacctgtctaattttattttttgtagagacagggtctccttatgtagcccaggctggtctccaa
actcctgggatcaacgaatcctcctacctcggattctcaaagtgctgggattacaggcgtgaaccattgcacacggcctacactgtgtcttttgataaca
gt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr21 38512413 38512742 1001213 0 - pAlu21-38510832; RIP_Alu_chr21_038_02 NA NA SINE Alu Ya5 aaatttcacacagctcaagtccgtcctcaaactctcctttaaataataaacgacttcctcctttcctatctcaggagcgctgggcccttccctcggggat
ggttatacttacgccatctgctggttgttaatgggactgcacttgctgctgtaagccgcagtaccatggttctgtgcccaagtcctcctagaaaacggag
gccttggtattggtggactaattgaagaaatacagatatgccattcatcatttagaacaccaagagggccacctgaggtgttaactttacttttaggagt
atttcttagaagaggatatatttcatattttggctctccaattctttatgctgaatctaaggaaatattcttgagttcagcttcAAAAACAGCCCAGGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCCCAGGTGaggttataaatgctgatgtggaaatgtcagagtatgtggtcagtgtgacaacaa
tctggataacctgaaaatgttcatgctgcaaatgtttagaaaggctgtatagcattaaaaaaaaatgctttcaatcgaggtgccagaaacatgtgaccta
atgcttgcaggtgggaatggagtggattttggctttggaaacatataagactaatttttatttctttttttatagagacagggtctctccctgtttccca
ggctgaatcatagctcattgcagcctcaaactcctgagctcaataaatactcctgcctcggcctccagagtagctgagactacaggcatatgccactgtg
ctcagctaatttctttaaattttttgtagc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr21 13338191 13338504 1001214 0 - pAlu21-13338095; RIP_Alu_chr21_013_02 NA NA SINE Alu Sc atgttcaagaaatgttataaaactgtgaattaaatgttcattattcaagaaatgaattgaactttacctaatccttatttgacagtatatttttgtggca
aacattaacatttgacaaattagaatttcagggatgcagttttgaaagcttccccccaaaaatggaggtttcctctgggtgatacaaactcacttgattc
tcttctatcaatgatcccaagattccaaatgccaatgtcaggcactcctgctctaaatgggtcactaaggaagtggctgtaaattaaaagagattggctt
caaataaactttgattgcatattcttaaatggtccatggggtttatcctattaccagacaataggattttatctcagctattAGAAATTCAGTATAAAAG
GCCAGGCAAAGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGCGGGCAGATCACAAGGTCAGGAGATTGAGACCATCGTGGTCAACATGGT
GAAACCCCATCTCTGCTAAAAATACAAAAAATTTAGCTAGGCGTGGTGGCACATGCCTGCGTCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATTGCTTG
AACCAGGGAGGTAAAGATTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGTGACAGAGCAAGGCTCTGTCTCAAAAAAAAAAAAAAAAAGAGA
AAGAAAAAAAGAAAAGAAATTCAGTATAAAAGtttattctctattagaatgatactcctaggatcctaatgcatatctacttcttaaaatgcaataatcc
atttttattctggtttctattgtaattgatactattttttggcaaaatatcagaagtatgaataaaatggcttattaatgaaagttctaactcatgtatg
tggcttagcaaaatagaagccactaaatcacttgaattttaagggacaattctgtggagaaagatataatattttttctgcaatatgcataacctattca
aatataaccatgattaatctaaaaaggcttaaaggccttctaatagaagatgattatttatggtttatatgagaaaaatcatcatttataaaatattcta
aattctagaagaca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C21orf99:NR:026916:3/12
0 chr22 15414649 15414954 1001215 0 - pAlu22-15409101; RIP_Alu_chr22_015_01 NA NA SINE Alu Sx atgcccagtcttggaattgctggcgcaaatggtggagcagtttagattcaggaggtacatgtacaggtttcttacatgggtacgatgtgtgatgctgagg
tctagggtatgagtgatcccatcacccaggtagtgagcataataccccacagttggttttttcaactcttgtccttctaccttcctctctccccctaact
agaacacagtatctgttcccttctctgtgtctacgtatacacaacatttagctcccacttataagtgagaacacacagcattctgttaatttacttaaga
taatggcctccacactgttcacaatagcaaagatgtggaaccaacccaaatgctcatcagtgatagactggataaagaaaatgtAGCACATAGACACTGT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTCTAGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAGCA
TGGCGAAACCCCGTCTCTACTAAAAATACAAAAACTGGCCGGGCATGGTCGTGCATGGCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGC
TCCAACCCAGGAGACAGAGATTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCGGTCTCAAAAAAACAAAACAAAC
AAACAAAGCACATAGACACTGTggaatactatgcagccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccctcatgtt
cagcaaattgacacaggaacataaaaccaaacactgcatgttctcattcataagtgggaagtgaacaatgagaacacatcgacccagagaggggaacatc
acacactggggcctgttgcaggggtgggggactgggggagggacagcattatgagaaatacctaatgtagatgacgggttgatgggtgcagcaaaccgct
atggcacatgtatatctatgtaacaaccctgcacattctgcacatataccccagaacttaaagtagaatagaaaaaataaaaaataataaaaataattaa
aaaaga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr22 41235917 41236212 1001216 0 - pAlu22-41136811; RIP_Alu_chr22_041_02 NA NA SINE Alu Yb3a1 tctctcttggatcaaaatatccgtggactgctctggaaagtgaggagttgggggttgttggggttcatcttagaaccgcctcccagcggtgcccccatcc
tgccctgggttcaggcctctgaggagaaaccaaagcctgggctaccccaactcccacagctgggtcccttgaccctgggttggatttgaggctcagttaa
tctcagctcacgctcagctggcacaagccaggcgcaagcaagtgctgaaggcacagccttgctggggcgcagggagttcaggacttggtcacagtcagcc
ctgaacagcagagctgggatctgaacaggcgctggagcccacacttgctctgagagagaatttatgtcttcacaatcctcccattgaAAGTCTACAATCC
TGGCCGGGTATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCAGGAGATGAGACCATCCTGGCTAACATGG
TGAAACCCTGTCTGTACTAAAAATACAAAAATTAGCCGGGCTTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGACCTTGCAGTGAGCTGAGATTGCACCACTACACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAAGT
CTACAATCCcgtggtttttaatacattgagttgtgagaccatcgtcacaattacattttcatcacccccaaagaaatcgcaaacctctgagcttacacac
acacacacacaccccacccccccacccccaacaggcttccggtcctgagcaaccatgacctggctttgtctctgccgtgtgtcctatttggacttgaacg
tgaatgcagccatacaacacgtagacggttgtgtctgacttcatccacttagtgcgatgttttcaaggctcatccatgctggagcccatgtcagtgcttc
gtttctttttatggcttaaaaatcgtctatggtgggccacgcacggtggctctcgcctgtaatcccaacactgggaggccgaggcaggcggatcat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SERHL:NM:170694:8/11
0 chr2 20530160 20530453 1001217 0 + pAlu2-20634265; RIP_Alu_chr2_020_01 NA NA SINE Alu Ya4b ggcagtgtcctaggggaggaccagctgctgaatggagacttggctgttcctgtctcactctgcaggtctttttcccaagggactgagaaatagatgcctg
aactggcttgacagtgccaaatgccaagttctgaggtgtctgggccagaggttgggtctgtggcctggtgatctccaggcctggggaggttgcactctgg
cagtccatggtagaaggtgaggtcaagtcactcacatgctcaccttgtttggaagcatcaagtctgatttcagagctcaggctgaaaacaagcatctaga
acggatccctgaaccggcttctgactcatcctcttcaaattacgctaagatttgtcaggcccctccttcatctttaggccaagtgttAAAATGCCATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAATG
CCATGTGagtccaaggaggtgggctcgagctgcgtctgcctttgcttcctggagggcggaggactagcccagcagatcctggtggtgcagaaattggaga
gcttggggccactgaaaaagggttcaggccccaatgaaaggacatttttggctccttgtcaaggacagacaggctgcagatctacacacgggatttgatc
cagcccccatctagatccctgtgccctggcaattagtctggttcctgctacctgtcatcagtcctaccacctgcctgggtgtgtgtagtgggtgcagggt
gctaggatttcatgtgtacactgggtaggcaggtttgtggtgggagcagcaggatgggctcagagctcagcactgagggaatgtgtgtgctctt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 43512487 43512798 1001218 0 - pAlu2-43616594; RIP_Alu_chr2_043_01 NA NA SINE Alu Ya5 ggatattaatccaggagaaatgaaaacgtgtccttaaaaagtcttatattagaattttatagcagctttattcataatagtaaaaaaaaaaaaaaggtaa
agaacccatgcctgtcaagaggagaattaataaacaaacttacagattcatataatggaatactactcaacagaaaaagaaccagactattgatatattg
aataacatggataaatttcataaactctgtgctgagtgaaaaaagcaagccaaaaaaacgtattattgctgggcacagtggctcacgcctgtaatcccag
aactttgggaggctgaggtgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctccaataaAAGTACAAAAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGCGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCATTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGTACAAAAAATTatccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgc
gaggcggagcttgcagtgagccgagatcccgccactgcattccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaagtacaaaaaattatccgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccagg
agatggaggttgcagtgagccgagatcgcaccactgcactccagcctgggcaacagagtgagactccgtctcaaaaaaacaaacaaacaaaaatgtatta
ttacatttatat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:THADA:NM:022065:26/38
0 chr2 49466403 49466709 1001219 0 - pAlu2-49570505; RIP_Alu_chr2_049_01 NA NA SINE Alu Ya5 gaatcaacctaagtgtctattaatgggtgaatggataaagaaaacatggtatatatacacagtggaatactgttcatccataaaaagaatgaaattctgt
catttttgacaatgtggatgaatatggagtacaccatgttaagcgaaaaaagccagacacagaaagacaaatactgcatgatctcacttatatgtagaat
ctagaaaagaagaaaaaagaaaaagttgatatcatagaaacagatagtagaacagtggttaccagaggtggggaagagaggggagagaggaagacaggga
aagctggttcaacagctacaaagttataattagattggaggaataatttctagtgttttacttcacagtagggttgctatggttAAGAGTAAAAATATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGTAAAAATATTGtatattaaaaaatagctaaaagagaggcttctgaaggttctcaccacaaataaataaataatgcatgaagtgataaa
tacacaaactaccctgattcgattattacacaacataggtatgtattgaaacatcaagaacaacaaacatatcttataaatatgtaaaattacaatgtgt
caaacaaatcaatatttttttataaaaaggctaatgactgcattggaatgaacaagcaagaaaatagtaggagatgatatctcagcagtgggtaggacct
acatcaactagatcatataggatcttgagggtcatagaagtaatttgtattctattctatttacaatgaaaaatcatttaaggtttttaagcagaggagg
gtcatga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 82193970 82194276 1001220 0 - pAlu2-82298076; RIP_Alu_chr2_082_01 NA NA SINE Alu Ya5 aaggtggattctgtttttcatctagttaaattcccagtgttactccctactggtgtttccactctgaagctcacataattatagtgaacatgaattcctt
cttattggaagaatttaactcttttatcttattatgtgaaacaaagcttagtaagagaaaaaataaggcagtatatcctaacagatatatcaagcgtaaa
ctccccaaaagagtgccggggggaaaaagcactattaatcaagcaaagctaatagtgttagattttctgcagaaatgagaataccatctcaacaaactct
tagtagtgtctcaaaagtgaaaaaattagaggaagattttaataggcagaacagacaatagtttatggggctcagagaatagttaaaAACTGTTAAAATA
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAACTGTTAAAATAtgattaagaatttcaaaatggtgacagcataacattaagccacctcatggctatacaggtcacatgcactgtgaagccag
cctgttaacagagttttagggcctgagctgagaatttttaatgtagtttgtgaaagtagaaaactggctaggattaagcacaatgtatatcatgatattt
ctggattagtggacagagtaatctgaggatcttgaagtgagctttgatgaacaatctattagtgttgaaaagtaaggtgttttacttggtttccagcctg
aacttcctggatcaaaattgctacattaagtacctatgttatttttgcttgttttcagtattatttagcatagaaggaggaaagtattcctggccacaga
attacta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 85372630 85372953 1001221 0 - pAlu2-85476742; RIP_Alu_chr2_085_02 NA NA SINE Alu Ya4 ctgtggttccagctacttgggaggctgaggtgggaggatcacttgagcccaggaggtggaggttgaagtgagccaagattgtgccactgcactccagcct
gggtgacagagcaagaccctgtcttaaaaaacaaaaagagagaaatagctaacttaagacataaagtctacaaaaatattttttgagaaatacagaaaag
tataaagaatgataccacacccaaaacctgccatgtgggattgtttttatagcttttaaattttgttctttttttcttaaataaaacatcacagaaagtt
aaatcctcttaaacactccaccagtcttatgctcctccccacttcccaaaggcagctaccattgaaatgttcccattctcccttaaaAATACATATGACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATACATATGACCagtaaactcagcactttgggaggctgagacagaaggatcacttgagcctgggaggtcaagacc
agcttgggccatatagtggaaccccatctctacaacaaataataaaaatagctggatgtggtggtgcacacctgtagtcctagctacttgggaggctgag
gagggaggaatgcttgagtttaggctgcagtgagctatgatcatgccactgcactacagcctaggtgacagagtgagatcctgtctctcaacaaagcaca
aaaaaccaaaatccgggaggctgagacaggagaatctcttgaacccaggaggtggaggttgcagtgagctgagatcatgtgccattgcactcctgcttgg
gtgacaagagtgaaactccgtcct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TCF7L1:NM:031283:4/12
0 chr2 91053270 91053577 1001222 0 - pAlu2-91157380; RIP_Alu_chr2_091_01 NA NA SINE Alu Yd2 cactaggtcaggagtttgagaacagtctgaccaagtggtaaaaccctgtctctactaaaaatacaaaaattagctgggcatagtggtgcgcacctgtaat
cccagctactcaggaggctgaggtaggagaattacttcgaccccgggaggctgaagttgcagtgagccgaaatcgcaccactgtactacagcctgggcga
cagagtgagaatccgtctcaaaagaaaaaaaaaagggtggtggggctttaataaattaagtggtacattttaaatattttaattgtttattagatattac
gtatgcagataaacctgtttaaatatagaagatttatattcctatttacatatatccttttgacaaattagaattgaaaataatataaaAATAAATTTTC
AGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGGGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCACGGTAAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCTGGGTGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAAG
CGGAGCTTGCAGTGAGTTGAGATGGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAATAAATATATAAAATAAAAAATTA
AATAAAAAAATAAATTTTCtttctgtcatgcagacttaaatagtaaaatatcttccttctattatttttatcttttttgtttatgatggttaggaagtga
atatctaattttctatactgtgaaaaatacacataaagtatcatggaagttcaacattcattttccttgaaaataattccaaagttttcttctccagaaa
tatatcctgttatcattaagtttagttgtactgataaatggcagttgatgatttgtaagtttttaaacatatttattcataacacttatttttttttctt
tttgagacggagtctcactctgttgcccaggctggagtgcagtggtgtggtctcggctcactgcaacctccacctcctgggttcaagcagttctctgctt
cagcctct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 101341647 101341968 1001223 0 + pAlu2-101579686; RIP_Alu_chr2_101_01 NA NA SINE Alu Ya5 caatcagtccccaaggtttatggattctttatcccaatatctgattataaacttttaaatatcatgctgggacattttctcaaaagcttgccttgggggt
aaaaaaatactaccacatgggaaaaaaaagagcctgttgcatagaattgtttatgatggcaaaaattggaagtaaccaaaaagcttagcagtggggaaat
acaaataaattaagttttatcaatactataacatacagcctttaaaatagatgagatagagctataggtgtccatgacaaagatataagtaaaactgtta
caagcagtgaatctgtatggatctgtagcaacctcaattcctgcctcctcagaagaaagaattcagctgaggggggcataaggcagagtGAGAACTGAGG
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGAGAACTGAGGcaagttttagagcaggagtgagagtttattaaaaagttttagggcaggaatgaaaggaagtaaagta
cacttggaagagggggccaagcgggcaacttgagagatcaagtgcatgctttgacctttgacctagggttttatatgttggcacacttctggggccttgc
atcccttctctctgattcttcccttggggtgggctgtctgcatgtgcagtggcctgccagctcttggaggtgagcatgcacagtgcatttatgggacttg
tacacatgctcacttgagatgttcttcctttaccagtcaagtcttcgtataaggtcacataccagttaaactccgccagttttcgtcttggtgcacacat
gtgagcccacttacccggctcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CREG2:NM:153836:2/4
0 chr2 101464286 101464597 1001224 0 - pAlu2-101702325; RIP_Alu_chr2_101_02 NA NA SINE Alu Yc1 cacgcccagctaattttttgtgtttttagtagagaaggggcttcactatgttggccaggctagtctcgagctcctgacctcaggcggtccacccgcctca
gcctcccaaagtgctgggattacaggcgtgaaccaccatgcccagctcagcttgctttcttttagttctcacagctacactctgcaggaggcactttaca
atccaggaaacggcccctcagaggtcccccaggcagaacggttaaatccgtggccctatgtgctctgtcactcattggctacacaaccttgtgcaaactc
acttcaagtgtcttcaattccctgcaagtctccttttcctccctgtgaaatgagtccactctactggattcacgaactcacgcatAAGATCTTAAGCAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGATCTTAAGCAGGtactgattggttcttctgcatatgctgggtactagggctggaggggtctaagttttggtctgatcttagactt
agcccactgtcacggactcagtcaggcctctgagatcatgcctagtctcctcaggtaaacatgacttatctctcagtttattttcttctctggctttctc
caagatggccccagggtctatggggaagaggggtggctcacctggtgggaggatgctgtaactcatggctcaagccagagcattcttcacagtgggaaag
agagctagcagcagcagctaaaagtggcaggcaggccccacccatacgggtccctcctcatcgcaggaccatggactctaaggcagtgcccttgtcctct
gggtgctagtca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 113332532 113332838 1001225 0 + pAlu2-113522775; RIP_Alu_chr2_113_02 NA NA SINE Alu Yg6 ttcaatgctatccccatcaagctaccattgactttcttcacagaattagaaaaaactaatagccaagacaatcctaagcaaaaagaacaaagctggaggc
attgtgctacctgacttcaaactatactacaaggctgcagtaaccaaaacagcatggtactggtaccaaaacagatatatagaccaaaagaacagaacag
aggcctcagatataacaccacacatctacaaccatctgatctttgacaaacctaacaaaaataagcaatggggaaaataattccctatttaataaatgat
gttgggaaaactggttagccatatgctgaaaactgaaactggaccccttccttacaacttatacaaaaatcaactcaagatggattaaaGATTTAAACAT
GGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGTGGATCATGAGGTCAGGAGATGGAGACCATCCTGACTAACACAG
TGAAACCCTGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGATG
TGAAACCAGGAGGTGGAGCTTGCAGGGAGTGGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCCATCTCAAAAAAAAAAAAAAAAAA
AAAGAAGGATTTAAACATaagacctaaaaccataaaaaccatagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcatgatt
agaacaccaaaagcaattgcaacaaaagccaattgacaaatgggatctaattaaactgaagagcttctgcacagcaaaagaaactattgtcagagtgaac
aggcaacctacagaataggagaaaattttttcaatctatccatctgacaaagggctaatatccagaatctacaaggaatttaaacaaatttgcaagaaaa
aaaaacccatcaaaaagtgggcaaaagatatgaacagacacatctcagaagaagacatttatgtggccaacaaacatgaaaaaaagctcatcatcactgg
tcattag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 117609534 117609859 1001226 0 + pAlu2-117799777; RIP_Alu_chr2_117_01 NA NA SINE Alu Yb7 tacagaagcgtgtacaccatttcaaggttacagaaataatgcgggttggattctgctaacacaggttatgggattgggaaaaagagaaattctattgagg
ggcaataaatgattgctggggagaatgattggatcttggaacagagattaacctgttagtagtttctttggaatttaaatgctccttggagatgtctatg
aaaagagttgaactctaaaatatgtgaagagatttattctgagccaaatatgagtgaccatggcctgtgatacagccctcaggaagtcctgagaacatgt
gcccaaggtggtcagggcacaggttagttttatacattttagagaccatgagacatcaatcaaatacattaaagaaatacattgattAAGAAATACATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAATAAAATAAAAAAAAAAAAAAAAAAAGAAATACATCCatcaaatacatttaagaaacacattgatttagaaaagcagaacaactcaaactggaggggc
tttcaggctacaggtgaatttaagtattttctggttgacaattggttgattttgtctaaagacctgatatcaatagaacgggaatgttcaggttaaggta
aagattgtagagaccacagttcttttgaagtcttatagtggctgcccttacagaagataggtgacaaatgtttcctattcagatcttacctgtttaggat
tgggagggtctggaagaaaaagatctagttatgttagtggacatcctttacagatgtaaattttccccccacaaagaacagctttgcagggccatttcaa
aatatggcaaataaacatattttggg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 128587743 128588039 1001227 0 + pAlu2-128776108; RIP_Alu_chr2_128_01 NA NA SINE Alu Yf1 tgcctagcatgactttagaacataagctaataatctccctctttataaaaaaatctagttatttgaatcccttttttgacaaatccagtagtttcattga
gtctattatttgcacatatgatgtgctttgcttggctttctgaagaaatataaaacatgctaaaaaagtagctcgataaagtttacattttatttcaaaa
tgaaccatgtaaataatcttttctgattttaatatggtcatcatactatggaactgattgttgaattcagtttcctttccaaccttttttcttctgtttt
ctctttgccacctttttatttggtggaagggggaggattttctaaacaggcgattcataggtagacttgatgtaatattaagcttttAAGACTCTGTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
ACTCTGTGTAatatttagtcatttaaaatatttatatgtaaaggttgttagccctttaaagtttctatgtcataataagctcagtactaagttcatgcaa
aaaaaataaaattttatttattgatttatttatttttgagacagagtctcgctctgtcgcccaggctggagcacagtggcgcgatttcagctcactgcaa
cctccgcctcctgagttcaagtgactctcctgcctcagcctcccgagtagctgggattacaggcactcaccatcatgccggctaattttttgtattttta
gtagagagggggtttcaccatgttggccaggctggtctcaaattcctgacctcaggtgatctgaccgcctcagcctcccaaagtgctgggattacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:UGCGL1:NM:001025777:6/41
0 chr2 158427347 158427642 1001228 0 + pAlu2-158683025; RIP_Alu_chr2_158_01 NA NA SINE Alu Ya5 atatacgttaactacaaatatgaaagtgtactatgtttcatgtttatgtttatggaactgtactacagaactgtacataatttatatgaaaggaattata
ctatgttttgagtgtcctgcttttttcatgtaatattttgtgtactctctatagtcattcattcattgcaacaatttctgtgtgcctcctatgcataaga
cagcatactaggcacaggataaacatatacacatacacacacacacacacacacacacacacacacacacagagtacaaaacagacataccttgtattta
ctaatatatatataaggtagtatctgtaagatacggaaaataattaaggctcaaactagatggaatagccaacaaaagcctctttGAAAAGGTAACTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA
AGGTAACTACTtttaaaatgagatctgtctctgaaaattcatcaaaaatagtatttttagtgattacataaaattccattctatgaatatatataaacct
aaccgctgctgtagaacatttacttttttttttttttttttttttttttttttgagacagtctcactctgtcacccaggctggaatgcggtggtgcgatc
tcggctcactgcaacctccatctcccaggtactcctgcctcagcctcccaagtagctgggattacaggtgtgcaccaccatacttggctaatttttatat
ttttagtagtgatgaggtttcaccatgatggccaggttggtctcgaattcctgacctcaggtgatctggcctcctctgcctcccaaagggttggga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ACVR1:NM:001105:1/11
0 chr2 181634083 181634394 1001229 0 - pAlu2-181889756; RIP_Alu_chr2_181_01 NA NA SINE Alu Yb7 tgacttatcaaatatttagaagtaagtcaacttaaaaaaaaaaaaaaggtcacataacgaaacaaaatgtgtgaaatttcaggtctaaacatcactttat
caagtcagctacccaagtttctgaagttcacatgtggcaggcattttttaaagttatgaattatacacaaatgattttatctgaggttatataatcataa
tctagttcaattctcattggctatcattttaatatccattactactacactttatataactaattaattaaaaaaggaagggagaacaagaagccttcta
ttattaaagtagttgcctaaaagcatacagcagcatggaaggagcaggaaaaggaggcactggtttcagacacattgctttactcttgttAGAAGTGGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAGAAGTGGTCtgtgcacctaaatacttttaaaagtagagattccattaatgatggtgacaaaataattatagagtggtatgccattaa
caaattaaatgaaggtattgagaaacttttggcctagtctacttcaaatggcattggtaatttcctcacaaactgttttatggggatctttctatgaata
acatttacctctcaatctacatttaaagctaactaaaaaaaaaaaaaaaaaaaaaaaaaaagcactcgtttttgtagtcttattgtacatgttaataaag
atttgcttaccagggttgcagtctgtcaaaagggaacaaatagacagcaaaacctttgaaatagtcaaagcgggactccagttgtctttaaggatgtcca
gacagatgactc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:UBE2E3:NM:006357:5/6
0 chr2 182273501 182273813 1001230 0 - pAlu2-182529181; RIP_Alu_chr2_182_02 NA NA SINE Alu Yc1 ggtccacttgtcacctggatgtgcacacaaccatcaaacttagcataaacagtctttagcccaacaaatttctcattaaccttgctctactcccagactt
ccctgtaccacttacctaattgcttaaatcagaaaccagagaaaacccttgactactcatttaacccaatatcaaatagttatgtgcagttacaagttat
ggacaactcaatttacagtagcttaaatgttgttgttttctttttctcacataagtaggttcaaggcagattgctgtggtgttgattcaataacctaaaa
atgtccagcaatatttctacaattcgtgtggtattccctgatggaattgagaaagaactgcatctccttcatgttcaaaagaaacAGAAGTAGAAAGAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGGCAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGTAGAAAGAAGcagtcttgtgagtctcttttacaaggaaacagcttttcctgaagagcctcctagtagacttctctttacagt
tcactgtgcagaataggccggatcactaccccagctataagggagactgagaaaacagggaacaggattgttataattgaactattccaaacaagatcca
tttattcaagatgaacacattggctcctcagaaagccagagttcctttagcaggaaaaaagtgaaaatacatattgactaaataacttgaaatatctgca
acaaatccccgcccccacctttctgccaaccaaatatcaagttgggtcttatcctttaaatatcttgaaaatatgtctattccttcaccactgcccccat
tttaatgtaaact UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 192267659 192267976 1001231 0 + pAlu2-192523336; RIP_Alu_chr2_192_01 NA NA SINE Alu Ya5 ctctccctaaccaccacacaaacagtaaaaaaccatgggtgaattctattaagaatggagaaaattttccaaaaatggctcaaagtccagaagcattaaa
ggaaagattgatcaatttgactacatttacatgttaaaaaataaaatgacaactgggaaaaacatttgtaacatcacaaagggctaatattcctaacata
aaaagaacttgtataaatagagaagacaaaacacactatggaaaagtgggcaaaagatatggacagttcacagaaaaaaagttcaaatggcccttaagta
tataaaaagatgctcaacttcactcataatgaaagatgtaaattaaaataccaccaagataacattcttcacttttagattggaaaaaatATGAAAGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGAAAGTTTgaaaacacacttgcttggccaggtgtggtggctcatgcctgtaatcccagcgctttgagaggccaaggtggg
tggatcacctgaggtcaggcattcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatttactgggcataatggtgcgca
cctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagattgcacctctgcactccaacc
tgggcgacgagagtgtaactctgtctcaaaaaagaaaatattctcttggtaacactattggaataggaacattcactgatggaggaaatgcaaaactgta
taatctctgttatagggg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 192270451 192270774 1001232 0 + pAlu2-192526128; RIP_Alu_chr2_192_02 NA NA SINE Alu Ya4 taaaaacacagtataaaagtcaaaaaatggtacacttgcaagggcacttaccaggaatggagcttagaggttggaagttgctctgtatgagtcagtgagt
gagtggtgagtgaatgtggaggcctaggaaattattctacactactgtagaatttatgaacatttgggctacactaaatttataaaaaacattttcttct
tcaataatgagttagctcactgtaacttactttttaaactttttaaatgttttttaagtttttaactcttgtaataacacttagcttaaaacacacattg
tacagctgtacaaaaatattttctttatgtcattctataagctttttaaaatattttcaaatgtatttttttttttaaagcttaaaaaaAACATGTAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACATGTAAGAcacccacatattagcctagacctacacagggtcaggatcattaatatcagtgtcttccatctcca
catcttgtcccactggaaggtcttgaggggcaataacatgtatggagctgtcatttcctatgataacaatgccttctggaaggcttcctgaaggacctgc
ctgaggctctttttgaggcagtgtcactcttttcagaaatatgtccatggtggtttactcaatttgcttcttttttattcatagatttgcatatgtaatg
cattgcgctataccattaagacagctatgatgtcactgcagttacagtgtcactaggtgatagaaattgtccagctccattacaaccttatggaaccact
ggtgcatacgtggttcattgtggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 195739566 195739859 1001233 0 - pAlu2-195995238; RIP_Alu_chr2_195_02 NA NA SINE Alu Ye5 gtttcatctacattaaacatctgttgtttagtgcagccatcttcatcaatgatcttagtgaggtcttctagacaatttgctgcagcttctacatcagcac
ttgctccttcaccttgcatttttatgttatggaggtgacctctttccttaactcttatgagccaacctctattagctttcaacttttcttctgcagcttc
ctcatcattctcagccttcatagaattaaaaagagttggggtcttgctctggagtaggctttggctttggggaaggttgtgattggtttgatctatccag
gccatgaacatttcatcatatcagcagtacggctgttttgctttcttatcatctgtgtgttaactggactggcacttttaatatccttcAAAAACTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAC
TTTTCctttgcttttgcaacttggctatttgtcctatttgtcacaaaaggcctagctgtcagcctgtcttggcttttgacatgccttcctcactaggttt
aatcattctggcttctgatttaaagtgagaaatgtgagattcttccattcacttgaacacatacaggccattttagggttattaattagcctaatgtcaa
tacagttgtttctcaggaaatagggtggcctgagaagagaaaaagagatggggaaatgtctggttggtggagcagtcaaaacacacacaacatttactga
ttccattggctttcttatatgggtgtgctttgtgtcaccccaaaacaattataataataacatcaaagatcactgatcaaagattaccataaca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 208769414 208769722 1001234 0 - pAlu2-209025091; RIP_Alu_chr2_208_02 NA NA SINE Alu Ya5 aaaaatattaaaataataaaaaaaaagaaaatatgatgtttatacttcaggagcttactatcaaaataggagattccaaagaaattcactagtagaacac
tttaaaagggctggataaatacaatgaagaaagaggcaaacactactttataatagtaataactaccatttgcaaaagacttattataatgttccaagcc
aacattatatatatgatatttctaatatttaggagaacccataaggtagattttcattaacaacactttacagaagagagaaataaagtgcagaagtaac
ttacccaaaatcacatagttatcattctattaacttaccatgtactactgctacttttcagtaatttaaatataaattttggtgaagatGAAAAATTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAAATTCCTatcaatattctgtggaagtggcaatgttctgtgacatttccacaatatcaaggtaatatatatgtagatataatattgta
agaattttaaagactttgaaagggacattgaagtctgatgaagatgcagtacttgggaagtcagaattgcagaaatggtctttctctggctaggtattcc
tcctctgtcccatctgtataaaacatggatattatttttatatctgcctcaaggatacgctatgagaactgagaatttcctaactatggcataaaagtgt
tctttgctgttgtgttatttgttttgattttaatgtcttgagaataaaaggtataagaagacgtgaatttcccccaaagctaaagcagcctagctggagg
gccctcgtt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 212259505 212259787 1001235 0 - pAlu2-212515181; RIP_Alu_chr2_212_01 NA NA SINE Alu Yb7 ttcttctgcctcagcctcccaagtaactgggactacaggcgcccaccaccacgcctggctaactttttgtacttttttttttttaagtagagatggggtt
tcaccatgttagcccaggatggtctcgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccacgccc
agcccagtattgggttttaacccaactcttgtggtcttgggcagcttacactctctgtgactctgcccacctataaaatccatgatcattcctgtttttc
atgatggctttgaatattagtattcataaatgaagaaagaataccccctccaaaaagaaataaaactaaaggccaatgtatctctaAAGAATCTAGAGGC
TTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTA
GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT
TGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATCTAGAGGCaaa
actccttagcaaagtagtagcaaatagcagtcagcaatatatacaaagaattatacaacataaccaaatgagtttattccagggatatacgattggcaca
atatttgataatcaaaaatgtaatatattaacagcccaaggaagaaaaaattcattatcatgtcaattgatacagaaaaagcatttgaaaattttaacac
ttgtttctgtttaaaaatctcagaaaaaaatagaaattcagagtaagtttctccccttcatgaagaccatctacaaaaatcctacagctaacattatgct
taatggtgaaaagctgaaggcttttgcactagattgggaacaagaaaagaaagacctctcttatcactcatttaacatagtat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ERBB4:NM:005235:12/28
0 chr2 235759423 235759739 1001236 0 + pAlu2-236110861; RIP_Alu_chr2_235_01 NA NA SINE Alu Yb7 cggaagtgaagtacagaaatagtgggactgattattgctcagcatttgtcttatttgaacacagtttgaacactcagcagtctatgagtggttgaagcat
ggccgctgtgattggccaatactcagctattgttacaggtgcatactactaagttaggtcttcaatgttgtcggcagggacacaacaaaaaaagaaaatt
gcaggccaatatccctgatgaacatcgatgtgaaaattctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagctaatccaccacaatca
aattgtcttcatccctgggatgcaaggctggttcaacatatgcaaatcaataaatgtaatccatcacgtaaacagaaccactgacaaaAACCACATGATT
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACCACATGATTatctcaataggtgcagaaaaggccttcgacaaaattcaacacctcttcatgctaaaaactctcaataaact
aggtattgatggagcatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatggacaaaagctggaagcattccctttg
aaaaccggcacaagacaaggatgccctgtctcaccactcctattcaacatagtatttgacgttctggccagggcaatcaggcaagagaaggaaataaagc
gtattcaaataggaagagaggaagtcaaattgtctctgtttgcagatgacatgattgtatatttagaaaatcccatcgtctcagcccaaaatctccttaa
gctgataagcaacttca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 9876689 9877024 1001237 0 - pAlu2-9964070; RIP_Alu_chr2_009_01 NA NA SINE Alu Yb7 cagcgttgctgctgaggaggcctggggacccatggccgcaccgaggtatggtcaggcctggttctgacatcactcagttccccagctctgtgccccagcc
acccaacggatgacaccttgccgagtgtggcggctcccggggttgctcctgtggaacagggactccgagcagaaaattctctgaaggcaggaaccaccta
ggggtcttgggtcctgaaaggcgaacatcctctttcgccacctccaggaagcccttttcaatatttctcacacttgggaggctaaggcaggaggatagct
tgagcccaggaggactgaggctacagtgagctataatgacgccactgcactccagcctgggtgccagagcgagaccttgtctctttAAAAAAAAAAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTCGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AACAAAAAAAAAACAAAACAAAACAAAAAAAAAAACAAAAAAAAAAACTGGgggaggggaggcgggcgggacatgtaatttggacatagaaacacacagg
aaaatgccatgtgaagataaacacagatgtgggggatgctttctgttttcccctatggttgatgtttattcaatttatttgttttggtttttctctgttt
tagggatcacccctccccatacaatctgactgaattttacttactgaataagtaacacattaacaatgttacaaaagtttgttgaaacgatgcaaaaaag
gtatactcagggaaatatccttctgtcccctttcccttctattccattccctcccacctctgtaggtaattaatttcattagtttctagtttatctttct
tgtgtttctttttgcaaaaataaacagatttgtatat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 5126642 5126955 1001238 0 + pAlu2-5214005; RIP_Alu_chr2_005_02 NA NA SINE Alu Yg6 cagtgtggtattggcagagagataaacacataaatcgattgaacagaacagaaaatccagaaattgaccaaaataaatatgaccaactgttttttgttga
aagtgctaaggcaatgcatttataaatgaataccctttttaacaaatggtgctggagcagtttaatatttagagttaaaaaaaataattttgacctaaac
ttcacacctcatataataattaactcaaagtagatcttgtacttaaatataaaatgtaacctgatgaaacttttagataaaacataagaggaaacctcag
agattgacagctgggcaatacgttcttagacttgacaccaaaacaaataatctacagaaggacaaagtagtaaattagacttcatcaaAATGAAAATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATGAAAATCTTtggctctgtagaaaaccccattaacaggattaaaaaggcaagcaatagactaggagaaaacacttgtaaactac
atagctgttaagaatgagtatctagaatagatgaaatctcaaagcttaatagtaaaagtacaaatattccaattacgaagtgggccaaaagacatgaaga
gacatttcaccaaagaggattgtgtaaacgctcaataaacacgtgaaataaaaacatgttcaggatcactggctgttagtgcacttgtgcctccataata
gcacccaccattgactggcagcttaaacagcagacatttattttctcacagttctggggctggaagcccaagatcaagcaggactgaattctcctgaggt
atctctcttgggct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 87193227 87193538 1001239 0 + pAlu2-87297329; RIP_Alu_chr2_087_02 NA NA SINE Alu Yb7 gcattaaaacctgaaatataagaaaccagatttatcaaaatatgtgcaagatatttacattaaaaactacacaatattgctcatagatattaaagaagac
caaagtaaatagagaccatgctccttggttgaaacagaatattcttaatattccaattctccccaaaatgatctatagagctaaggcaatcccaatcaaa
atctaagctggctttaaaatagaaactgaaaagccattaagaagttcttgtgagtgtggctggttggtctagggctatgattctcacttagggtgcaaaa
ggtcctgggttcaaatcccagaggagcccaacttttagttcaaaagttcttgtgaaaacaaaaataatctagccaaaaatattcttgaaagaggAAGAAA
TTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACA
AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAGAAAgaggaagaaatttgaagatatacacagtctgcagccagacacaaaaaaattacatattggatttttcctttttatgaaatgt
ccagaaaagagaaatatataaagaatacataggcctgtgatttcctggtctgggagtagaaaggatactgactgtaaataggcattaaggtatttgttta
aagtgaagaaagtactctaaaactggattgtagttatcattgtgtaacaaatatttgtgaaaacaattgagctgtttgcttataaaaggtgaattttata
gtatttacattatacatttataaaactttttaaagtatttttaataaagctgtgtcattaaaaagaccaataatctgccattcctaacatgtttagtaaa
aaaacatgaaac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 203426045 203426337 1001240 0 + pAlu2-203681722; RIP_Alu_chr2_203_01 NA NA SINE Alu Yb3a1 aaaaaaaaaaaaaaaaaaaagtgtacctatttctccacatcctctccagcacctattgttttctgactttttaatgatcaccattctaactggtgtgaga
tggtatctcattgtggttttcatttgcatttctctgatggccagtgatgaaaatgctcatcatcactggccatcagagaaatgcatatgaccaatggaac
agaacagagccctcagaaataataccacacatctacaaccatctgatcgttgacaaacctgacaagaaatggggaaaggagtccctatttaataaatggt
gctggtaaaactggctagccatatatagaaagctgaaaccagaacccttccttacaccttatacaaaaattaattcaagattgatcaAAGACTTAAATGT
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGA
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTG
AACCCAGGAGGCGGAGCTTGCAGTGAGCCGGGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAAAAAAAAAAAAGACTT
AAATGTtagacctaaaaccataaaaaccctagaagaaaacctaggccataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaa
gcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagggcttctgcacagcaaaagaaactaccatcagagtgaacaggcaaccta
cagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctgcaaagaactcaaacaaatttacaagaaaaaaaaacccca
tcaaaaagtgggcaaagaatatgaacacacactgctcaaaagaagacatttatgcagccaacagacacgtgaaagaaaagaattttcaaccca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ICA1L:NM:178231:3/5
0 chr2 204271926 204272225 1001241 0 + pAlu2-204527603; RIP_Alu_chr2_204_01 NA NA SINE Alu Y ctccgggacacagttaagcagagttaagagggaagtttatagcactaaatacccatatcagaaagcaggaaagatctgaaattgacaccctaacatcaaa
agtaaagtaaatagagaagcaagagcaaacaaattcaaaagctagcagaagacaataaataactaagatcagagcagaactgaaggagatagagacatga
aaagcccttcagaaattcagtgaatccaggagctggtgttttgaaaagattaacaaaatagatagaccactagccagactaataaagaagaaaagagaga
agaatcaaatagacacaataaaaaatgatgaaggggatatcaccactgatcccacagaaatacaaactaccatcagaaaatactatAAACACCTCTATGC
GGCCGGGTGCAGTGGCTCACGCCTGTAATCTCAGCACTTTAGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGGTTGAGACCATCCTGGCTAACATGG
TGAAACTCCATCTCTATTAAAAACACAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCTGGGAGGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAGAAAAAAAAAACCA
AAACACCTCTATGCaaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaaaccatggagaagtcaaatctc
tgaatagaccaataacaagttctgaaatggaggcagtaattaataccctatcaaccagaaaaagcccaggaccagacagagtcacagctgaattctacca
gaggtacaaagaggagctggtaccatttcttctgaaactattccaaaaattagaaaaagagggattcctccctaactcattttatgaggccagcatcatc
ctgataccaaactctggcagagacacaacaaaaaaagaaaatttcaggcgaatatccttgatgaacattgatgccaaaatcctcaataaaatactggcaa
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 208667366 208667698 1001242 0 - pAlu2-208923058; RIP_Alu_chr2_208_03 NA NA SINE Alu Yb7 cacctctacaaaaataaataaatatatacattttttaagtgctcactatgtgtttctgtggctgttgttatatctattgtattgtattctacattgtata
ttttattattgtctagttaatatattattatccttttcatcagttagaattgagtttttatttagattcaaagcaccacaaatacccactgcaatcttaa
aaacaacaattcatatccctggttttgatacccatagttgtaagaaaagcaagagaaaaccggctgggtagagcggctcacacctgtaatcctagaactt
tggaatgccgaagcaggagtattgcttgagggcaggagctcaaggccagcctgggcaacatgttgagactctatctctacaatctttaaaAAGTTAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAACTGGGCggcggccaggcctgtggctcacacctgtaatcccagcactttgggaggccaagg
tgggcagatcaggaggtcagcagatcaagaccatcctggctaaaacggggaaacccagtctctactaaaaatacaaaaaattagccaggtgtggtggcgg
gcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaattcaggaggcggagcttgcagtgagctgagatggcgccactgcactcca
gcctgggcgacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaagttaaccgggcatggtgttgagtgcctgtaatcccacctactcaggaggctg
aggcaggaagatcacttgagcacagggggtggaggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 3848218 3848533 1001243 0 + pAlu3-3864962; RIP_Alu_chr3_003_01 NA NA SINE Alu Yb7 aactggcagcctctcagttcacttgataaatgggccggagtaacacaccccaacgaggaatgtgttgcctccaagatccaaataggcccactaggcattc
tgcctctttcttggttgtaggaggggccaaatacagcaacttatccttcaccttaggagtatctcaccaggccccacaccactggacccctaaaaatttt
actgagggggaagattcctgaattttagtcagatttatttctcatcctctggcacgcaaatgtctcaccaataagtccattgtgtttgctacttcttgct
cagtggatccaatcagcatactgtcatcaacgtaatggaccattgtgatattttgcggaagcaaaaatgattaaggtctctctgaatAAGACTATGACAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGACTATGACACaaagctggagagttgatatacccctggggtaggacagtaaaggtatattgctgtccttgccagctgatggc
aaattgcttctgatgggccttatggacagaaatggagaaaaaggcatttgccatgtcaatggctgcataccaggtaccaggagacgtgttaatttgctca
agcaatgaaaccacatctgctgcaattggagtcacgacttagttaagctcatgataatctgctgtcattctccaagatgcatctgtcttctgcacaggcc
aaatgggagagttgaatggggttgtggtaggaatcactacccctccgtctttcaagtccttggtggtggcactaatctctgcaattgctccaggatgcaa
tattgtttttgattta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LRRN1:NM:020873:1/2
0 chr3 18730835 18731131 1001244 0 - pAlu3-18606299; RIP_Alu_chr3_018_01 NA NA SINE Alu Ya5 tgtaagctgtgacctaagaaagggaaggatctagctatgcaaagtctggttacaagtagaggaaagaacagagtaaaagtccgtaggatgggaaggagct
tggtgtgttcctgtaactaataagagctggagcataagtgaggcaatatggacaggagttagatcatactgggtcttgtaggctgtggttagatatttgt
attttaccccgaacacaatgggaagtcattgtaagcttttagcaagaaataaaattatctaatttcaattttttaaagaaaatcactttgccaatgtcta
gagaaggaattggtatggaaagagtcaaatcagagatattagctgggaggctgttgtggtattctggggagagaagatggtctgaaatAAGAAGGTGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAGGTGACAgcagagatcagtataaaattttggatcagatgcatatgtttggaggcagaatcaatgacttgaatttggtaagttgggggaaaagaggaat
catggacaattgctagatttctggcttaagtaattgaatgaatagttgaaacttttactgaaatggagaagtggaaaccaggtatggtagtaaaagttca
agagttctatttgggacatgttcagttggtaacgttagtatgtcatcaaataggcaaggcttccactcaagctgtgaaagtacctcaagacttgtaacaa
accaatttacaaatatttcaagtaaaactaatattaaacattccatgactcttggagtccagaaatattatgttggtttttctctgttttttttctt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 21432513 21432825 1001245 0 - pAlu3-21307204; RIP_Alu_chr3_021_01 NA NA SINE Alu Yb7 atcagttatgcgctcttgtcattgttacaggaattatttaaactgagtcctaacagtgaaagttttacctgacttttgctgatttttttttctttctaca
tggggagatttatctctggagcatctcttgtgtttttgtatggtttgcttcagtagctagagaggctactatcaggaagtgaaatggatcatttctaatg
gtaggtctccattgcctacatggtatttctgagagtggtatcagggtgtccagtgaaagacggataggttgacatgtcatgctcatttggcctaaaggtt
gttactgccaggaatggacttacaacttaccagaatgtgaatggtgacaaaaggcaggttctactctggaaaaatatgtgttattttattAGAAGTTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGTTCATgcaggtcatgaagagtcacagagtttaaagaattctctggttgggtcatcaatgttcagatgtcaagggactgaaca
ttaccttcaatttgagggtcttctctttcctcttctcagtgatggaaactcatccttcctaggtggctaagttgactgtagaaactgctaaaatgtattt
gtcaaacgaagtaaaatctgactattaatatatatgatcaggtagagtatcttagagtttggttaactaagacagccgataatggggtcatgttattttc
agactggcaggtcatctctaaaggcaatttttaaagattagggctaaaatgatttgtgagcaaagaagtataattaaaaataagtaatagtatagtgacg
agttctaaggtta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 26761724 26762030 1001246 0 + pAlu3-26636419; RIP_Alu_chr3_026_01 NA NA SINE Alu Y tctgtgaatggataaggctaggagttgggcaggtggtgaacgctgggatgcctagtgcccaactgcaaagaaaaagaaggcttttccctgcccagaatca
ccttctcaggaaagccttcagtagctcttaaaggcagaactcactttagctttttatctatttgcactggggcactgtgttctcctgtatccctagctcc
aatgttaggcagggtcagggtagtaagtggcaattttgtgtctggacctaatgtatatggtggctcttgctacatagtgaaaatagtaattcctactttc
ctttctttaacagcagtctatattgagcacactgtatggcctcctcgctgtagtgagaagaaaacaatggccagcttaaaagcaataAAGAAGGGACCGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGGGACCGGagcaggaagtaaaaagggagagtctgttctgtttagaaaagcacataaattctttgtagattctggatattagccctttg
tcagatgagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgtagaagctctttagtttaatta
gatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggtt
ttcttctagggtttttatggttttaggtctaacatttacatctttaatccatcttgaattattttttgtataatgtgtaaggaagggatccagtttcagc
tttctac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 61450101 61450411 1001247 0 - pAlu3-61329867; RIP_Alu_chr3_061_01 NA NA SINE Alu Ya4 gaactgtggctgggcacagtagctcatgcccgtaatcccagcactttgggaggccaaggcgggtagaacacctgaggtcaggagtttgagaccagcctgg
ccaacatggtgaaacgctgtctctaattaaaaaaaaaaaaaaattagccggatgtggtggtgggtgcctataatcctagctacctgggaggctgaggcag
gagaattgcttgagcccaggaggcagaggttgcagtgagctgagacggcgctactgcactccagcctgggcaagagagtgagactccgtatataaaaaaa
aaaaaaaaaggaatgtgcacatgtgcactgtgtttggtctcattctcataatacgcttgaattgttccatggacttgatttttttaaaAACATGTAAGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAACATGTAAGCTtaaacaacatttaatttttacattagaaaagtgataagaatttatcaaatgataataatgttgatggagtactgaga
gagtttttaataaaaactcaagctcctctttaacctcattcctagtatctaattaccaggtccatccagaagaacagagcaatgcctacagcaatttcaa
cggttctcctgaaacatatggcacatctcacagttatatctatggagtaaatcctcttgcaacagattcaaaaggatcacaccccaagcacagtgcatgg
cacacagtagtggcccatgcatattggttaaatgactaaaagactgtacagtcacacctggttttattaatgttgaaatactttggcaggagatgggccc
aaaagctgtta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 81990198 81990502 1001248 0 + pAlu3-81713027; RIP_Alu_chr3_081_02 NA NA SINE Alu Ya5 acaatgcctcatgctttaatcatgaggttagtgtattaaagcaatggttgatttttggctcctcccatatactgtatgacatgatatgctaatatattca
gaaacctaggaatagtttcatttattgctagtggtaatggccaataatcaaggcataacttcataataagaaattcactttcagaatgaaaacacatcta
aaataagaagttttaaattttctaattgttgtcctctcctgcagatgatagttaaactattttgtcagctatgatttataagtacagtactcattatgtt
cctattcctttatattttactatattctttttacctttctcaaatgggacatttcctcaagataatgtatataattattctcattAAAAACTGGTAAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAACTGGTAAACCtagagaaaatactctgtattttattacttagcaagtctttaccaaacaggtgatttttgaaaacatttaatactcttgta
ataattaaagcctttttgtttcattccaataacatttcttaacatttctctccaggtgagtacattttgtgtttttaagctaaaaaaatgcaacacggcc
tgccatatatcatatttgttattaaatggctcaaaattttaattatatttttatgttggaatgcaagcatgtattgcagaaatctgaggtcacttttaaa
gttcaagagacttttcagaatggtaaaatgaatataaactttaaaagaaatgtcaatgttattcgatacaattactgttaaaaatgaaatagttaaggat
aacat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 111702115 111702409 1001249 0 - pAlu3-111500551; RIP_Alu_chr3_111_01 NA NA SINE Alu Y gaacatgtggtgttcaggtttctgttcctgtgttaatttgctgaaaatgatggttttcagcttcatccatgtccctgcaaaggtcatgaacttattattt
tttatggctgcatagtattttgtggtgtatatgtgccacattttctttatccagtctatcactgatgggcctttcagttggtttcaaatctttcctattg
tgaatagtcctgcaataaacatacatgtgtatgtgtctttagagtagaaaaatttataatcctttgggtatatacccactaatgggattgctggctcaaa
tggtgtttctagttctagatccttgaggaatcaccacattgtcttctgcaatggttgaactaatttacactcccaccaacagtgtaaAAGCATTCCTATT
GGCCAGGCGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCATGAGGTCAAGAGATCAAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAATATACAAAAAATTAGCTGGGCTTTTTGGTGGGTGCCTGTAGTCCCAGATACTTGGGAAGCTGAGGCAGGAGGATGGTGT
GAACCTGGGAGGTGGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCCATCTCAAAAGAAAAAAAAAAAGCA
TTCCTATTtctccacatcatctccagcatctgttgtttcctgactttttaatgaccaccattcaagctggcatgagaacgtatctcattgtggttttgat
ttgcatttctctaatgattggtgatgatgagctttttttcatatgtttcttggctgcataaatgtcttctttggaaaagtgtctgttcatattctttgcc
cactttttgatggggttgtttgtttatttcttgtaaatttgtttaagttccttgtagattctggatattcacccttagtcagagggatagactgcaaaaa
tgttctcccattatgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 115949174 115949481 1001250 0 + pAlu3-115747612; RIP_Alu_chr3_115_02 NA NA SINE Alu Ye5 tgggattaacagaaagggtggaaatagccaaatgtattcatatttttggccaggcgcagtggcttatgcctgtagtcccagcactttgagaggctgaggc
aggcagatcacctaaggtcaggagctcgagaccagcctggccaacatggtgaaaccctctctctactaaaaatataaaaaattagccaggcatggtggta
cacacctgtaatcccagttcgggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagcaaagactgagccactacactccagc
ctgggtgacagagcaagattctgtctcaataaaataaaataaaatgacgttcatatttttaaaatacagcaatattcatttgtttAAAAAACAAGATTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACCAAGATTGAGAagagcacagttatatagtgacttttgatacatacacaataaaacttattgaattttcaaaaagtgagaaaaaaa
ctactctgctttaaatttaaagtaataaataataatgaagacatatcaacattggtaactgtcagagtgagaaaaggaaattgaacattcaatgtgacca
gaggaagggtgaacatgggagatactgcccaggaaaagtgctcatgatgagtaattcaaagacccagaatcttaacataaattttttatagttttctttt
caagggactatttgaaaaaagatggttctggggtttttgttgtagcttctttctttctttctttctttctttctttctttctttctttctttctttcttt
cttctttcttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZBTB20:NM:015642:4/10
0 chr3 127841629 127841939 1001251 0 - pAlu3-127640448; RIP_Alu_chr3_127_01 NA NA SINE Alu Y tagaaaagagaggaaaggatagggaagtgggggcaagaaatgacagagggttgagcaaagactgaagtctggttgaagggtagttgaaggcataaaattg
accagatatggtggccagttggatgtagacacttggctgtgtatcagaatgtcttgtggactttaagaaaaattacaaaccacttgtctctttgtgcaga
gattttgatctggtagatgtgggcagtgtacgtgcacatttaaagcatcatagatgatcctggttctgaccgtagccaggtgattatgacagggcatcca
ggtcatggtaggatatggattgagggagaggaaagaatacaggaagagagactgggggggaaatggaatactgttcactgagatAGAAAACACAAGCAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAAACACAAGCAGCtttggtttattggcagggtggggttgagttcaggataatgggttgatgctggacacatttctccagtcaactc
aatggagagccttaggtcaagctaggatcagctggttgtagataaaatgaggcctcctgacttggcagtgtaattttggggtagttttatttgctttcaa
gaatccttcttctggttgggcgtagtgactcacacctataatcccagcactttgggaggctgaggtagaaggattgttcaagcccaggagattgagacca
gcctgggcaacatagtgagactctgtctctacaaaaaatagaaaaattactctacaaaaaatagaaaaattaggcaggcatggtggcatgcacctgtagt
cctagctactc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 131395386 131395689 1001252 0 + pAlu3-131194206; RIP_Alu_chr3_131_01 NA NA SINE Alu Ya5 tgttagataggatgttaagttgtctggctaggaggctgtctgtctcgctggctttgaagatgtgagctgccatgtcatgagcggccagatggagaggccc
atttggcaaaaagctgagggcatcaacaaactggggccctgagtccagcagcctgcaaggaactgaatgctgccaacaaccagatgagcctggaagcaga
tcaatcaccagtcaagcctccagatgagaactgagccctggctgacactatggttgcagccttgcactgaacccagctgagtcacgcctggattcctgac
ccacagaaaccatgcagtgataactgtctgctgtctcaagccacaaagtttgcagtaatattgttgcacagcaatagataactaatatAAAAACTGTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCGGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGGGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAACTGTCCTacatcatgtacattactgagcgaaatgtagaacctggatttgagctctgatttcagaggtgtggtctcagtctccccagggaga
cctgtcctgggagacagttatgccaggctgtgatgctgtgttgattgttctcttcctacccagaagctttcaataggcatgtcaagcatgtgaccctagc
tacatataccaaatgtatttctgacaaatgccaggacatcgtgagctttcttgttttactgagagctccataaaggaatgactatctttttctttttttt
tttttaaagagtctcactgtcacccaggctggagtgcaatggtgctatctcagctcactgcagtctctgcctcctgggctcaagggattctccagcctca
gcct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 377929 377930 1001253 0 + pAlu3-133142108; RIP_Alu_chr3_000_02 NA NA SINE Alu Ya5 gttttttgttcttgcgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagt
attccatggtgtatatgtgccacattttcttaatccagtctatcatagatggacatttgggttggttccaagtctttgctattgtgaataatgccgcaaa
aaacatacgtgtgcaggtgtctttatagcagcatgatttatctttgacaaacctgagaaaaacaagcaatggggaaaggaatccctatttaataaatggt
gctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaagatggattaAAGACTTAAACGT
GGCCGGACACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGACTTAAACGTtagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaa
ggacttcatgtctaaaacaccagaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaaccaaagagcttctgcacagcaaaggaaact
accatcagagtgaacaggcaacctacaaaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaac
aaatttacaagaaattgtactttcaaaaatgtattgaattgggatacttctataattcaaaacagacaccataatattctgctgttttctgtttgtattc
gtatgactaggacataga Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CHL1:NM:006614:12/28
0 chr3 186500038 186500347 1001254 0 - pAlu3-186419268; RIP_Alu_chr3_186_01 NA NA SINE Alu Yb7 ataagccgagatcgtgccactgcactctagcctgggcaacagagtgaaactctgtctgaaaaaaaaaaaaaaaaaagaaaagaaggaaatcctatcatat
gctacaacacagatgaactctgaggacactgtgttaagtgaaacgaaccagccacaaaaagaaaaatattgcatgattccacttatgtgaagtatcaaaa
atagtcaaactcttagaaatgggaagtagaatggtgctactagtagaatggggaagagagaaaaggtgagttattcaaggggtacagagtttcagttttg
caagatgaagaagttctagagatctgtttcacaacaatatatataccgttaacactactgtactgtatctttaaaaattgttttaaaAAGAGAGAGAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAGAGAGAGAGAGagaaaacagacagacatacagagaagatagcaatatgaagatggggtcatcgactgaaatgttgttacacagcacat
tgctgtacttcattctggcagccctaggaaagtaacacaagggcccacagaagaaagcttgcaagtgagtgcaggctccttttgtgactggggcttcccg
ttattctgaaatgttacattagcccacattcagcctttaagaattcattacagttttagctgctttcttcttacctacctttacggtgccttctcttcct
cctatgctctgccaaaggtaacacagtttctgtgtcctgtctctcttcaaaagggcttgcctctctttggaatttcagttcatctgattgccttgtgacc
tcaactctct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 192152502 192152815 1001255 0 + pAlu3-192071734; RIP_Alu_chr3_192_01 NA NA SINE Alu Yc1 acacactggattgaataaatgacagataccacagaataatatgttagtaattatgcagatttagtaattgaaattatccaaaataaaacacagagaataa
ttttttttaagtaaacagtgaactggtgacctgggggaaaatttcaagtggtctaacatacatattattggactccctaaaaggtggggcagaaatgagt
atttgcaaacacaatggtaaataattgccaaatttgatggaaactgtaaccccacagaaccaagatgctcagtgaacttcgatcacagaaaacattaagg
aaattacatcaagacatttaataatcaactcatttaaaaccagataacgatgttttaaaagtagttgaactgcaggaaatcacattgtataAAGAGTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAGTGTAaagaggaagacaggtgagaatgtcagcaacataaagttgaaaacaatttcagaagaaagaggaacaacatctttaaa
atactgaaaggaaaatactgtaaattaagaattctctacctagcaaaaatacctttaaaaaattaaagttacagaaattctttttagacataaaaaccca
aaagaagatatcactggcagaaatgcagtacaagaaatacaaggagactacttcaggatatatatacacacacacacacacacacacacacacacacaca
cacaccagttgggaatacaaagaatcaaaatcaaaatggtaactcttggctaaatgtaatattttttatttaaaatacgttggggtgatcagacccaaca
ccaggtcgtggggg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 10372476 10372805 1001256 0 + pAlu3-10389221; RIP_Alu_chr3_010_01 NA NA SINE Alu Yc1 ggtgagccaacaggagagagcgtggcccatgtggatgccctgactgaaggaagtgagggaagatgggagggtaagtcttccagtcaactatcgctctctc
tggggacgtcagagcttgggagggacccaaggggcacctgggctgacctcccatttcatagctgagaacactgaggctcagagagggaagtggctcgtta
gcggcaaagtcggggttgggggttggctccaggcccccctttcccagagtctgtgcctgcagctaacttctctggatgaccatgctgtcaacagaaaatg
ccaggaacccagctctgccccctcaggccctgggcatggggagctctcatccttgtcctcgtctgctcatcctcttgacttAGAACTACTTGTCCTTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTACTTGTCCTTTCCtttgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggca
accaggcaaaggccctgaggcagggaggcagaaaacctgttctaatctgggttcactcagccactttgggcacatcactgtccccctttgggcttcggtg
ttttcttctggaaattggggtttgtgcgggaaggtgtttggactagatcagtcactcaaacctcaagtcatgccctgttagtgacgtgaaatttgtttag
tgggtggtgaccaacattttaaaaaagaaacaaagaaatagaagaacagaaaataggtaagtgcatcccattattttgtgaaattcttgctttggtgaaa
tgtgtgtgtttactgagtcatgacataaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ATP2B2:NM:001683:11/20
0 chr3 32178879 32179147 1001257 0 - pAlu3-32050375; RIP_Alu_chr3_032_01 NA NA SINE Alu Yb9 gcgtggtggctcatgcctgtaatccagcactttgggaagccaaggtgggcagattgcttgaggccaggagttcgagaccagcctgggcaacgtggtaaaa
accagtctctactaaaaatgcaaaaattagctgggtataggggcacacgcctgtaatcccagctactggagaggctgaggcaagagaattacttaaacat
gggaggcggagattgcagtgctgagattgcaccattgcactccagcctgggtgacagagtgagacccaggagcttgcaacatgcacctcagagaacatgt
tgtgtacgggctgaattgtgccctcctcccaattaatatgcttaggtcctaacccctagtatctcagaatgtgacacggtctttgaaAAGGTAATTAAGG
GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAG
ATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAAAGGTAATTAAGGtaaaatgagaggcaaaga
aaagttccattcaagaaaagacggtaccatagggagtaagaggatgtactgcaggaagttacattggtgctagattgaggggggccacatctgcctaagg
accatgtgcttcactctataagagcaggaggcctctgaatgtgaatgctcaagctggtagggaccatggtgttcatctggtcttccatcttaattttgtg
gataagaacaccggggcacagaacagctaaatacgtgacttgcccaaggccacagggctaataagccacagggcagccttgaatgctgccctcctgctat
tttttctatagcaatggagaagagaagggagggagaaggaaacagaggaagaccggagtagtggtggtc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GPD1L:NM:015141:7/8
0 chr3 1476421 1476422 1001258 0 - pAlu3-132274989; RIP_Alu_chr3_001_02 NA NA SINE Alu Yb7 tcatgtctaaaacaccaaaagcaatgacaacaaaagccaaaactgacaaatgggatctaattaagctaaagagcttctgcacagaaaaagaaaccaccat
cagagtgaacaggcaacctacagaatgggagaagatatttgtaatctaccctctgaccaagggctaatatccagaatctacaaacaccttaaacaaattt
acaagaaaaaatcaaacgaccccatcaaaaagtgggcgaaggatatgaacagacacttttcaaaacaagacatttatgcagccaacagacacatgaaaaa
atgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaAAGTCAGGAAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGTCAGGAAACaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttc
aaccattgtggaagtcagtgtggcgattcctcagggatctagaactggaaataccatttgacccagccatcccattactgggtatatacccaaaggacta
taaatcatgctgctataaagacacatgcacacgtatgtttattgcggcgttattcacaatagcaaagacttggaaccaacccaaatgtccaacaacgata
gactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgaagagttcatgtcctttgtagggacatggatgaaattgg
aaatcatcattctcagta Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 4092136 4092454 1001259 0 - pAlu4-4033862; RIP_Alu_chr4_004_01 NA NA SINE Alu Yb7 gacatggtctctggctgtgtcacccaggctggagtgcactggtgcaatcatagctctttgcagcctcgaactcctgggctcaagtgatcctcctgcctca
gcctgccatgtagcaggactacagatcctacagatgcacatcaccatgcctagctttttttttttttttttttttttttttttttttttttttttttttt
tgtagatagggagtctcactgtgttttcaaggctggcttcaaactcctggcctcaagtaatcctcccacctcagcctcccatagcactgggattacagcc
atcacctaccaatccaagccatgagtttggctttggatgtaacaaggttgaggtgttcacgagttgacaaatggaaaaaacAAAAAAGAAGTTGAGTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGAAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAAGTTGAGTGTTtaagactgctgtttgaaggagaagtctagcctcaagacaaaagttcaggactcatcagctga
gaaatggcactgaaaattacgtaaatggatgagctcagctagcaaacaagaccagagagagcagaaagtccagagagagcagcactgggctatgcacctg
gcctaatgctgccccgctcctcccaatccctgtgttatgctggagagggttcagcctctggtgagtttcaccaaacccccacatctctttcttctgagac
cttctctaaaatcccgtcttttatacttagtgaaatgggattctctttttcccatccagcttaagcaaaaacttttgactatgagaagaatgaggatgca
tttattatctgttctgcat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 28173399 28173708 1001260 0 + pAlu4-28252549; RIP_Alu_chr4_028_01 NA NA SINE Alu Yc1 ttttaaaaagtcatgtgacttattaacaaggcagttcttattttcaacttctggaggagaacataagagaaactgtagtgttagactcactgaccacatg
taaaatcaaacatgaggtctagactaagaaacagaaggcactaaagaagtctggtaaagaaaaccaacctagcaaccaaaaatggattcatgaaggtgag
tcttcttgttttttattcatctgatatgaaaattagttatttggtcagtcagttatgtaatctttactaattaaatgccaaatgtacagctttttgaaaa
ctgctacagattgtggacaagggttatgaggctttccatccaattaacaaattaatgcagtcatctacctaacttgactcttcagtGAAATGAGTAATAC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAATAA
AATAAAAAAAGAAATGAGTAATACtaagagctagttgactcttgctgttaacttcctgagtaaatcctgaaaaccaataaacaatagtcggttttgcctt
tggcaaaaacaaaccaaagattaattaactggcatgatatactggaaacagatactcaagaagcacactgaattccctctgaatgttatagagggattac
aaaaattaaatagagtttgaaaatgatttatgtttagacagtgttgcctaaaggcaggaagagctttcctaaaagataaatttccctaaaattctttttg
cttctatggattattgccttataaaaacattagcatcctttgtagaacattttctgtttgtactttgccaagaattctaagcaaggttgttaagtctgcc
gcatcatttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 55177194 55177497 1001261 0 + pAlu4-55332259; RIP_Alu_chr4_055_02 NA NA SINE Alu Ya8 ttacctaatgttagagctctaataataagttaaagaactgggatttaaaccagttaaatataataatgataataacagtaaacaattcgatcctcagaag
tctttgtgtgagctctgagctctgatttccattattaacgccagcctgtctttcgagggttgtgaagattaaatgagatagtgcctgtaagaacttaaca
ctgacttgcccaatcaacaagattaatagttgttattaataatagtaactggatccagtattcagaaggctctactgggaggaagtatagggacaaatag
caatggagaagtgactgggaggaagaaagaggtaaccggtatagacttccctttggaaaatttcaggtttgaagtttgtttttAAGAAAGCTTATTTACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGAAAGCTTATTTACCatgactgctatggactgaattgtgtctcccttccctcccccaaatcaacaaattcatagcctgaagccctcatcctcaa
tgtgatgatattagaaggcagggcttttgggaggtgatgaggatggagcctttgggattgaattagtgccctaataaaaacagactcaggagagctctct
ctctctccctgccatgtgaggatataatgagaaggcaattatctgcaagctgggatgtgggccctcaccagacaccaaatctgttcgcaccttgacattg
gacttcccagcctccagaactgtgagaaataaatgtctgttgtttaagccactcattctatggtattttgttgtagcagctcaagctaagacagtggctg
caag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 61251837 61252153 1001262 0 - pAlu4-61506906; RIP_Alu_chr4_061_01 NA NA SINE Alu Ya5 tactatgggatttagaaatattgtttttcactataagatctttaggttaaactgttttttgtttgtttgtttgtttgttttttgaaatggagtctcactc
tgtcaaccaggctggagtgccgtgttgctatctcagctcactgcaaactccccatcctgggttcaagtgattctcctgcctcagcctcccgagtaactgg
gattacaggagcctgccaccacgtctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctca
ggtgatccacctccctctgcctcccaaagtgctgggattgcaggcgtgagccaccgctcccaatctaggtcaaactgattttttaaaAATGTGTGCTGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATGTGTGCTGTAttactttaatgaaaagtaaaactttattttaagtgatcaatatttttaatgaattcctaaatattataat
ctcataatttcactaaaaaattacttggaagcatatacgtttggtggaaaaaatcagtgaccaaaatatcaatagagaaaatattgaatactagagaaaa
actagagactgggtataatagactttcattaattcgaaagaatttgcacattgtagtgcctgaatgtaattcgttatttatacaaagagtgattagtacc
agtgatcaagactgagaaaactgaaatgactgatggaaatattaatatttggaacatcattctgcttaatatacttttgcaatacttaaaggaattggaa
agggtgaagaatgtgag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 69825463 69825755 1001263 0 + pAlu4-70040703; RIP_Alu_chr4_069_01 NA NA SINE Alu Yc1 tttgttccatcacaaaagagtaacagcacagcaggcactactgaaaaaattggtacaaattactaaagagagaaaatcaagtattaacaggaattattgg
agtaaattatgtcttttaactgactcagtcactcagtttcttatcaagacaatgtataatatgaagatagctggcctctactaagggtattcatgtaaat
atgtgtatgcatgcagcacacgatggttttgaatacggcccaacacaaacttgtaaactttcttaaaacgttgtgatttctcttgctatttttttctcag
ctcaccagctatggctagtgttagtgtattttaagtgtagcccaaggcaattcttcttttcccactgtggtccagggaaggcAAAAGATTGGACACTCTT
GGCCGGGCGCTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGTGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAT
TGgacactcttgttctataggtatattttgtgcttaccatgaggattgtataaaaaattttataataaacattgtgtaataaaaatattttaaaaaataa
atacataaataaaatagaaataaaataaaaatatagaattaaattattttacataattaatgaaaaataattataaattataaaaaataaagcataaata
aataataaataacattaaaatattttaaaataacagtccattttaaaccaaaaaaacctttaattatatatgaaaactgtatttctttacatctcccatt
tctactttatgttagtaatatcactagttatatattttatcttctgtcccaattaatataaatgtaatgttacttttatgcttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 81521561 81521889 1001264 0 - pAlu4-81695227; RIP_Alu_chr4_081_01 NA NA SINE Alu Yb7 ttgcctatggctagcttatttttctcttttaaatctggcatacattttgaacactaacctcaacctcagcttcactccatttcttcaaccttttctttct
ctccatcttttaaaatctttttgtcataagatatacacatttcccttgttaattgcctcaaattcttttgtaggaatgcagactatagatagctgataga
tagaaggaagatagtagaaggaaaaaggaacaggaggaaggaaatgttttgaaactatttcccagaagcataatcgggcagcagatcataatgaactatg
aaggatgttgagactgaacaaccaggtaaggcattgcaacaaaccaagtcaactggtttgactggattagcgatttacaagaattttaaaAATGTATATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTATATGttaagagtaattataaataaaagaatcagcaagagtccatttttcattaccaattagaatt
ttcatcaaggagattttgaagacactctaaaatataaaatctatagggccaaaaatatggtattatcataataaaaatggcattttggcatgggaaatag
aattcagtgaaagaaaaataatgagctatttttaaaggcattttgttattggtttgacaaaaagtaacaataagaagtagatatggagctaaaagcccag
aagaacagacatgcttgaacatctgaccaaagttaatagaagacataaaagtgtgtgacatattgaagtagtggaatataaaagaggtgtaaatgagaga
aatgtcatttgggagagatccaaattagt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C4orf22:NM:152770:2/6
0 chr4 87604718 87605008 1001265 0 + pAlu4-87778373; RIP_Alu_chr4_087_03 NA NA SINE Alu Ya1 aaacccatttagctgactttgtgggtattctcgataaccattttcttaaaacgaaactgtttccatttttgaaattaactaattggattttccctaaaat
aactaatttaaaccaattgaaggtgctaagaatgtttttacagatgggtctagtaatggtaaagcttcttattctggatcaaaaggtaaagttttccaaa
tgctctatacttcagcttagctgtaattgaggtattcactgcttttgatatgcctattaatgtgatttctgattcttcacacgtggttcattccacacaa
ttaattgaaaatgctcagttatgatttcatacagatgaacaactgatgactttctttactcaattgcaaacagcagttaagagtAGAATGCACCCTTTTT
GCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTCGGATGCTGAGGCAGGCAGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGC
GAAACCCCGTCTCTACTAAAGTACAAAAAATTAGCCAGGCATGGTGGCGGGCACCTCTAGTCCCAGCTCCTCAGGAGGCTGAGGCAGGAGAGTGGCGTGA
ACCCAGGAGGTGGCGCTTGCAGTGAGCCGAGATCATACCACTGCACTCCAGGCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAGAATGCAC
CCTTTTTacatcactcacattagggctcatacacctcttccgggacttttgactgcagggaatcaaatggctaatcgcctagttgctaatgcaatatcta
atgctagacactttcacaatttaacacacgttaatgtctctggtctcaaacacagatacagcattatctggaaagaagctaaagctattatccagcgatg
cccaacttgtgaaatggtacattcctcatcttttacaggaggagttaatcctcgaggattggaacctaactctctttggcaaatggatgtcacacatgtt
cccttgtttgggagactagcttatgtacatgtatgtgtggacaccttttctcactttgtctggactacatgccaatcaggagagtcttctg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 88251177 88251493 1001266 0 - pAlu4-88424830; RIP_Alu_chr4_088_01 NA NA SINE Alu Yc1 acattatttgggtgttgtgatggaaaaaatgttttcataagggattgattaaaaatattttttaggctgggcgcagtggctcacacctgtaatcccagca
ctttgggaggccgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaatta
gccagacttagtggcacgtacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagat
cacaccactgcactccagtctgggtgacagagtgagactccatctcaataaaaataaataaaaatgaaaataaaatatttttaaaAATAAAGTTTAAGTA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAAAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG
GAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAATAAAAAAAAAAAAATAAAGTTTAAGTAgataaaagtgccaaggttttaagactttcaaatatcctgggaatattttatctttgtttagaggatca
aagtttggactttcatttcttcctctgcgtctcctcatcccacccccaatctgccctcccagtgctggtgcaatccaaatactgcaaattggaaatagga
aaaaaaggatataattattttttattaggtgttttaataaattggcaaaagttagtatatttgagaatgaattatgattttgaattaagaagttttgagc
ttattattatgcacaatatagatttactcttttagtaacactacatagctatggggaatatgagtgcaaaatttttttttaaaaagagcattaaaaaaat
ggaagatacacactaat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:AFF1:NM:005935:10/20
0 chr4 88994674 88994976 1001267 0 - pAlu4-89168327; RIP_Alu_chr4_089_02 NA NA SINE Alu Yb7 ctcctagtttcaagcgattctcctgcctcagcctcctaagtagctgggaccgcaggagcatgccaccacgcccggctaatttttgtattttttgtagaca
atgggtttcaccatgttgctcaggatggtctcaaacttctggactcaaatgatctgcccatcttggcctcccaaagtgctgggattacagtgtgagtcac
cgtgcccagcctgattgcatttttgatcttattgctggtcttgtaggtttaggaaatgctgtagagctcagcatattgatattagcaaagcatttgacaa
aattcttttgtgagcatatctaggccagttaataatagagccatagtcattattaaccaaacagctgcacccaaaaagtattgattAATAGATCAGCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAATAGATCAGCATCaggctacaagggggccaacttcaatatgctgcaggcactgtcctagcctgccctctgccctgttcaaaatttcttcaaactgg
tgaatgaacacccaggaagtatttgcatcttaagaactgggagtgatagttaatatttaggatcacaaaatcgagattgaagaaacttcaataaaatagc
attgtgaaatagagcattatgcatcctggatcagaaaataaatgatataatactgtacaaagagcagagctggtctaatattgttttttatggagtaagc
acatgagcaaacaaaaaccagaaggaagttagtacttatataattagaaattaaataaggagaaagggaaactaatatgaatttagcctgtattttggac
caa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 89900497 89900805 1001268 0 + pAlu4-90074152; RIP_Alu_chr4_090_01 NA NA SINE Alu Yh9 caattataaacaaaagtgtttatgaaacagtttgctcacaaatgtattccttaagtagcacagatgggtacacaagattttctttaggaatagctagaaa
tgtattttggcaaatatactatcattaaatgaaaaaactaagaacatctggaaatcataagtgatttcattaatgtatgagaaacgtttctgtgctgaaa
gcactacttaagacttgcagctacttttaatagccacccaaccaacccactttgaaatcatcagggaatagccagggctttttactattatatttccatg
aaatgatgcatggagacatattttcttcacatttgggataaaatgaaataccatcaatcgggtcctgatgagctactaaagtcttatAGAAATGCCAAGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATGCCAAGTatatctggagatttaagatagtttaaaaatgcagtttgtttactggggaaaaagccagattaggcatttatgtcacaa
aaagtatttttcccttaagctaaagcctaagtggaccagggttaaatgcccaaatctagttctcagctttttaaattacaaagccactcagttaccaatc
atgagtgtgcctgggttgcgggggaggggtcgtgggcggggggaagcaaaagagagtaagaatatgcatacagcaaataagcattttctcaaaaagattt
ataatgcttattacctttacagacatcaaaaaatactagaaatatgatttcatttttaaagtatggtatttccttcacgaggaacatacatcaagtcatt
taagccctc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FAM13A:NM:001015045:7/18
0 chr4 97791138 97791444 1001269 0 + pAlu4-97964793; RIP_Alu_chr4_097_01 NA NA SINE Alu Yb10 ccttttcctctccctatggctttgtgaacacgtctgtccaacactgatatttcttacaagtgtcaggaagagagaaagttattaaataggtaaaaatcgc
cctaaatgcctcaaactccttaaatatatgccagttttcctccatacctcatacctactcagtatttattgctttcttttcttatgttcaaaatctttca
aatctttattttcctaatttttttgtatcaagttaataaagaagatatactacagtgttttccttcctcatagtacttgcattttcaccattaaatacat
tttaagtgataagtgtgatgctcaccagaggtcctgaatttgaaagaaattttccacgttaatgtttttcaattcagtgatgtgagaaAAACAAAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAACAAACAAAATTTCtaggacacttgcatgaaaatgtatgtgggtgaggaggagaagggattgtccggatgtaaatatgactccttggacaattat
gacacatttgttccactccccactttatgactgaaaaacagtcacctgtctatcaagtcaacttaaatcagtaccatcacccttcattctgttgccagcc
acttctgctttcacctactttcagattctgtcccatatcatgaggaacctttgtcagataaagcccaataactagcataggatatgaagttgtgtcaaat
aacaggtattagaaaataaggaacatgcttccttatctgataaaatttattcctttaggacaattctggttggtctgagagttgatttcttcccttagac
agatagt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 115844058 115844319 1001270 0 - pAlu4-116017714; RIP_Alu_chr4_115_01 NA NA SINE Alu Yb9 agaaggtcatgtagttgaaatcatacattatgtagcctttcagattggcttctttcacttagttatatgtatttaaatttcctctgcattaatcaaataa
ttttatgtatagaattccaggcttcactaccagaaattatgctttggtaagtttgagataaggccaagaaatgtgcattccagaggattctaatacaaag
gtacatttatcagtttttgagaaacactgttctaaatgtcctaataataaacacatgatgctctttcctatagagtcagtcatgctcatggcaatatgcc
aaatgcaatcaagcaaaataaatgatgtgttacatttatatataatataatacagtttcagggcataattttctgataatgtggctattAAGATAGACTT
GTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCG
CCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAG
TCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACAAAACAAGATAGACTTtagagtatctgggtgtggaaactaggg
cccaaaggataaaatgagaagggcacatgtgccttgtgtggccagcacagtgttttacaaacaaacaaatcacatttgataaatgcccttgggaattatt
catgctcttgatatatattttgtgtgtatatgtatatgtacatgtatttgtatatgtatagaaatatgtatatgtatagaaatacagactaatctacctt
tacttgagtgggcccctaaaggcctttgggcttgcaacctcaattatagcaatggttttcagattgttcattgcacagctgggggtcccactaaagacaa
catggttcaataggagtccctggggtaaactcttctttaaatccattttatttactggactg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 121627111 121627420 1001271 0 - pAlu4-121800764; RIP_Alu_chr4_121_01 NA NA SINE Alu Ya3 agaaaagcaggactcctgtctgttttcttcccattattgaagccttagagcctaataaagtgcctaacaaataattaacactcagcaaatgctgctttga
ctgagggcattatggtgttatccaagtacctcttaggataggtagcatggaaatagcgatgcattataacattgcatattctcccaagtttatgcaatct
cttaaaccatgccaatacacatattggaaatctggggcaagtataaacgtttaggactctattttcactaacaaatacaccacatatcacaaaggatagc
caagaaaactcctctgatgaggagaacaattatgcttttgtacttgctttctctagagcatctctcttaggcatatattatccttttAAGATTTGTGTGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGATTTGTGTGAattatatttttcctattactcttttccctcctgtttgagttactggatttgagctgtagatgtaagttctttctttg
tttccattcctatattggtatatttatcaccaccaagagtttctagttgatttttccaagtttctctgttataagttttatcctgttgtttgtctttcac
tggcatttccattgataatttacttttcttctttgatatttaacaagcatttatccttcaacttttaagtttctcaagaatttacttccttgaggagcac
aaagcaatgtgtaacatttcaggagcttgagaaatttattttaaatttggtaaaaaacccaacagtaaggttaggtcacactggggagcaagacttttta
gatcaaacaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 126086824 126087140 1001272 0 + pAlu4-126260480; 55248; RIP_Alu_chr4_126_02 GGTCACAAGCATTTCAGACAAGG GGAAATAGCTGGTGTGAGGAGTGG SINE Alu Ya4 ttgaacatccctaaactgaaaatccaaaattcaaaatgctccaaaatttaaacatttttgtgtggcaacttgatgtcacaagtggaaaattctacagcta
agtacataatgcaaactttgtttcttacatattattaaaaggtgtatatgaaatataaattaattttgtgttgagacttgggtctcatccccaagatatt
ttattaagtatatgccaatgttctaaaatctgaaatctgaattcttaaacacttctggtcacaagcatttcagacaaggaatactcaacctgtagtagac
atttatgtatgctaaaaaataactctacctgcttgcataaaataaaagtgccttagtaatgatactaatatattttaagaaataatttAAGAGATTTTTC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAGATTTTTCaagcgatgataatataaatggatacaactctggatgtcctttttaattcccataaaattacataatttaga
cttcccataagtacataatttaagatattgatccattttctactccactcctcacaccagctatttcccactgctaaacagaggattttcaagggattga
cattttgtttcatagacagccacttagagtaccccacattggtgctcctttatttattccttgtttcataacatcatcatcacatcatagcatatgtgta
tgtgcatgtccatgttgtttcacactctcaggttatctctgctgaaattgaaactaggataatggtcacacattgcctttaggaatcttggcagcaaact
aaggaagtgaacccgtc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51. PMID:15514065.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 134039064 134039373 1001273 0 + pAlu4-134212719; RIP_Alu_chr4_134_02 NA NA SINE Alu Yc1 taaatggtgtttagaaaactggatatctatataaaaaagaataaaattggacatttaccttataccatacacaaaaatcaacacaaaatggatcaaatgc
ttaaatataaagcctaaatttgtagaaatattaaaggaaaacagagaaaaacactacacaacactgatttggataactttttaaaatatgaacccataaa
cacaggcaacaaaagcaagaatagactaatgggattacatcaaattaaatagcttctgcacagcaaaagaaacaatcaattgagtgaaaagacaacctac
atcatacatctgacaaggggtcaatttccaaaatatataaataactcaaacaactgaataatgagaagacaaatgactcagtttaaaAATGGCTGGAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATGGCTGGAGGAaaagaatacatatttctcaaaagaaggcagtcaaatggtcaacagctataagacaaatgcttcatatcactaatcat
caaggaaatgtaaattataaccacaatgagatattaccacacacctgttagaatggcaattatggaaaggaaaagataaatgttggtaaggatgtggaga
aaagagagccattgtacattgctggtgggaatgtacagccattcccacatctgtttagccatgtatacaatcattgtggaaaacagtatgaagtttcctc
aaaacgttaaaaatcaaactactgtaaaaatctagcaactccacttctgggaagacatccaaagtatattaaatcagtatgtcataaagatatctgcact
tccatgttca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 134361068 134361362 1001274 0 - pAlu4-134534717; RIP_Alu_chr4_134_03 NA NA SINE Alu Ya5 aagaaactagacatactataaaattcatacgctctactctgttttccccacaacaatctttagtaaatttctaacccacttaataaagaatagtgatttg
aaagagcaccaagttagtaatctaaagatggcaattgtatttctcaaatccttgtgcataatggatttcactttataaagtcatgtcacatcagtagtcc
tggtaatatataccctgtaatgtttcatgtgtttgggtataagtagtctcttataatgtctgaaaatgtagaaaactgtggtggatacagaatgacaaac
aatatcaggagcagatgtacacaggagatttcagcaggctttcttgtccagcacatcattcattagatggcccaagatatttttatAAGAAATGACAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
ATGACAGAAGgacataaaagttacactgtttaaagtgtttctgagtcaaatgacattgatggtttaagttactgcaatatacagacacaaaaaaagagaa
atacattctcagaaaaaaacatttgcctcttaacacccaaagttcaatactgaggaatcattaagtttatcagagatttcttttaacattttaagtgtaa
agatcagttactactaatgcctaacttgcttccatgggaaaataaaagcagcattttttacctatctatatattatgaactttattaggctactcacatt
ttgctctattttagacttgatttcaaactcaaagaatagtttgtctgccttggagctcacagcagatcgtaaaccagaaaatatgctcaagaaaca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 157221495 157221793 1001275 0 - pAlu4-157468140; RIP_Alu_chr4_157_01 NA NA SINE Alu Ye5 gatatactctcaaataagcaacaatatagaattctttactaacagacagccccacgtgctatattaaaagagatttcttccggtagaaataaaaggacac
tagaaacagacttaaagacacatgaacaaataaataatattggcaaaggtagtaaaaataaatagcaacaataataatacccatattgtaagtatactac
atgaaatttgttatcagttttttttactttataactcttttctatctaaacaaaagacaacttcataaggcaattatcataaaactgtgttgatggactt
atataaacgtataatttatgtgacaatactagcacagtgaggggaaacaaatgaagttatatttgagcaaagtattttatactattaaAACTAAATAGGT
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCC
TGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACTAAATAGGTattaatctagattagatcactttaaattaagatgtaaattataatccccagggaaaccactaaaagggtaactcaaaagaatacagtaa
aagaaaaacaagaagattataataatacataagaaaatatcaaattaatacaaaaagtgttataataaaaaagggaaaaatgacacaaggcatacagaaa
gcaaaatgcaactttaatccgaacttatgagtaattatatgaaccataactgaataaaacaatctaattgaaagacaggcactggaagaatggttaaaat
aaaaccgtagctcaactatatattttcaacaaaagacacatatttaattaaaaaaaaacacaaataacttgaaaataaaaggatggaataaagatatgc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 188032706 188033012 1001276 0 - pAlu4-188380059; RIP_Alu_chr4_188_01 NA NA SINE Alu Ya5 ctacattattaaaggccattaaatcataacagagaacctttagggctgtgtagaatggatacatttaactgggaataataaaatcattcatttgatttga
acaaatgtttaaggtttagaatcaatctgtcattaaaatcctataagcagaccacagtggaaaatgctagttgaagcagggcggaagagcctgaagtctt
actcgtatgttcccagatcatccacctccttcacaatcaatatcatccccaccaccaccaaagttaccccaaagagcttatagagcactgttctaaacca
tagagcactataagaatgtcctctccataatctctctgggaaaataggacgacttatcctattggcaataaggaggattctccataaAAGATAATTTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGATAATTTGTTGgctggactcacatgaagtaagagaaacctccaggagcctcccaagcccctcaaagtgaaatgaaagtggagcattccat
ggtgggtgaagaaaagggcagcagtaatccaagggcagatgtccattccatatctgtggccagcaggctgagccttgggcttgaggaaatgtaggaaagc
tgaacacaagactgatgcaactgtggaatgcagcaggggtctaaataatatttagctgagaaaaaagagaaagaaagaagccatacacattgtacatttt
gagaatttattttctagaaaagtcagaatgtatcatgtccactgaatctcagcacaattccctctggtatgcacaattctctcccgccaaaagcaatatc
gatataag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 81675523 81675701 1001277 0 + pAlu4-81849177; RIP_Alu_chr4_081_02 NA NA SINE Alu Ya5a2 aagaatcttcaagcttctaaattctatagagtgtttacttgatttctgaataataaaagtaataaagattaaaagagaactgtcatttcacccttgtatg
acagagaggagagactcggagtttagcaatttgtgtgtgtgtgcctattccattaagaagaatcatcttcaatctgggtaggacaaagcacccatcataa
aaatataataaaataagtgggaaactagttcccgcttctcagacctagcaacttacctgataggaagttacacagaatgatcattttgttttcagagttc
tttagaatgggaaaaataccatgatacctgaaaggggacccttccctcattttcccaatgggaaaaatatttaatttcacactAGAACTGAAGAGCTTCA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACTGAAGAGCTTCAtatc
actctctagccatgtttctggatggataaataaacagctgattggtgaacgtttagtggagagaagacattaacattaaaagagaacctagattctcagg
tacagaaatctcaaaaaactctcttcctgtttttgataaatttactagcttggcagtcacccatttgctttgtgctttaactgggtatgactgaaccttg
ctcatgccttaggcaattaagtaaaaatagcttttgggtttgttaagatcagtatgtgtcaatagcatggtgtaattatttagaagtgtaaagcacaaat
tatccttgtatcctcagttggccacctctagagtatagtgctagaatgtgaaaactatattttgtagaaaatacactct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C4orf22:NM:152770:2/6
0 chr4 137438309 137438310 1001278 0 - pAlu4-16634501; RIP_Alu_chr4_137_01 NA NA SINE Alu Yb7 gaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaagacacata
attgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaaggaaagcccatcagactaacag
cggatctctcggcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagc
caaactaagcttcataagtgaaggagaaataaaatactttatagacaagcaaatgttgagagattttgtcaccaccaggcctgccctaaAAGAGCTCCTG
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA
ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGC
AGTGAGCCGAGATTGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAGCTCCTGaaggaagcgctaaacatggaaaggaacaaccggtaccagccgctgcaaaatcatgccaaaatgtaaagaccatcgagactaggaagaaact
gcatcaactaacaagcaaaatcaccagctaacatcataatgacaggatcaaattcacacataacaatattaactttaaatataaatggactaaattctgc
aattaaaagacacagactggcaagttggataaagagtcaagacccatcagtgtgctgtattcaggaaacccatctcacgtgcagagacacacataggctc
aaaataaaaggatggaggaagatttaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaac Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 30814926 30815232 1001279 0 - pAlu4-30894070; RIP_Alu_chr4_030_01 NA NA SINE Alu Yb7 atccccatcgcttttttttccagagtgaattagtcatagataatcactaacaaatgcacacctattttattatagaactaaagaaactggtattgtttaa
acaatgcctgactgccttcctcctcttgaattagattcccttacaatgtcaaaaacaaatactatgaaaaacaatagtataatttatttctaaactggat
tcatgaaagatattaaatagccaagtcattttaaaatgaagcacaccagctgcaaattttacttgataaccattggttgagcggggcgggccaggggtag
ggggggaaacactagaaaccataagaagtcataatgattttatttattcatgatcttgtacacacactccctggtctgaaaaagatacAAGAAGCCTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAGGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAGAAGCCTTCAatttcaggttactgaattagataatttctcagtgtaacttcttcaagaattgagtgctgacagcatataccatggagagac
agatccatgatgagaggtctaggtaacagataatgggaggatggccagctaggcaattagagacaggcaaccagaactgtgatgataatcgtctggtggt
agaaatcacagcagatggctgaatgtaggaagaatgatcaatcacagcattgtttgtagtaactaaaatttggaaataactaaatgcccaccattagaga
aatagataatgagaacatggactattaatggaacaatgatcaaaaatagtatatacagggagagagagacatgcaagtagagagaaattggttttaagga
ctaaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 46362902 46362903 1001280 0 - pAlu4-58017031; RIP_Alu_chr4_046_01 NA NA SINE Alu Y atctctcagcatttgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattctttact
ttaagaaagttgaatattggcccccactctcttctggcttgtagagtttctgccaagagatcagctgtcagtctgatggggagctcctgaaggaagcact
aaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgtaaagaacatcaaggttaggaagaaactgcatcaactaacgagcaaaa
taaccagctaacatcataatgacaggatcaaattcacacataacaatattaacgttaaatgtaaatgggctaaatgctccaattaaAAGACACTGACTGG
GTCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGATGGGCGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACAGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCATG
AACCTGGGACGTGGAGCTTGCAGTGAGCTGAGATTGGGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAGAC
ACTGACTGGcaaattggatagtgagtcaagaaccatcagtgtgttgtattcaggatacccatctcacatgcagagacacacataggctcaaaacaaaggg
atggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgatagaacagactttaaaccaacaaagatcaaaaga
gacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactattctaaatatatatgcacccaatacaggagcacccagattca
taaagcaagtccttatgagacatgacagcatgctggcagccctcgctcactcttggtgcctccttggcctcggcgcccactctggccatgcttga Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 147678493 147678804 1001281 0 - pAlu4-147925127; RIP_Alu_chr4_147_01 NA NA SINE Alu Y ttatctcatgtcctgagctccctctgtgaaatgtttagtcaactgcctgacctccacctggatttgtaataggcaccttaaagttgtctccagcgaattg
gattttgctcactaaatctgctttcccatctcttctatctttgtaaatgatactaactgtgatggttaatactgagtgtcaacttgattggattgaagga
tgcaaaatattgatcctgagtgtgtctgtgaagtttgtcctcactggaatagacattctgaatgtgggtttgcctaccctgcacacaatgcttctgccaa
gactaccatccatggactcatggaatgctttatccatcgtcatggtattccacacagcattgcctctgaccaaggcactcactttatggctaAAGAAGTG
TGGCAGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAA
CATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAAGAGAAT
GGCGTGAACCCAGCAGGTGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGCGACAGAGCAAGACTCCATCTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGTGccgtcatggaattcactgaccttaccatgttccccatcatcctgaagcagctgaattgatagaacagtggaatggccttt
tgaagtcacaattacaatgccaactaggtgacaatactttgcagggctgggtcaaagttctccagaaggccgatgctctgaatcagcatccaatatatgg
tactatttctcccttagacaggattcatgggtccaggaatcaaggggtggaaatggaagtggcaccactgaccatcaaccctcatgatccactagcaaat
tttttgcttcctgttcctgcaacattatgttctgctggcctagaagtcttagttccagagggaggaacgctgccaccaggagacacaacaacaattccac
taaactggaaat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 151693400 151693701 1001282 0 + pAlu4-151940026; RIP_Alu_chr4_151_02 NA NA SINE Alu Ya1 gctcaccatcactggccatcagggaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaa
caggtgttggagaggatgtggagaaacaggaacacttttacactgttggtgggagtgtgaactagttcaaccactgtggaagacagggtggtgattcctc
aaggatctagaactagaaataccatttgacccagccatcccattactgggtatataaccaaaggattataaatcatgctgatataaagacacatgcacac
gtatgtttactgcggcactactcacaatagtaaagacttggaaccaacccaaatgtccatcaatgatagactggattaaaaaAATGTGGCAGCTGGGCAT
GGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAGCACGGTGAAACCCCG
TCTCTACTAAAAATACAAAAAAATAGCCTGGCATGGTGGCAGGCGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGA
AACGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGGCTCTGTCTCAAAAAAAAAAAGAAAAAAAGAAAAAAAAG
AAAATGTGGCAtatggaatattatgcagtcataaaaaaggatgagttcatgtcatttgtagggacatggatgaagctggaaaccatcattctcagcaaac
tatcgcaaggacagaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacagggaggggaacatcacacacca
gggcctgtcgtggggtggggggaagggagagggatagcattaggagatatacctaatgtaaatgacgagttactgggtgcagcacaccaacatggcacat
gtgtacatatgtaacaaacctgcatgttgtgcacatgtaccctagaacttaaagtacaaaaagaaaaaaaaaataacactccctcacctggca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LRBA:NM:006726:41/58
0 chr4 44565480 44565656 1001283 0 - pAlu4-44720539; RIP_Alu_chr4_044_02 NA NA SINE Alu Yb7 acagaaccttagccctctgaaagcacccagaaatgaagccaatcaactatgtacaacatatatcataggcaaatcctcagagaaaaaagaatataaaaac
aaaaagacccattcaaatgacaacaacttcaaaaagataaactctagccctctcagaatagaaagaatcagcacaagaactctagcaattcaaaaaatcg
gagtgtttttcttacctccaaaggattgcactagctccccagccatggatcccaaccagattaaaatgtctgaaataacagatgtaaaattcagaatctg
gatagcaaggaaattcaacaagattaaagagaaaactgaaaaccaatccaaggaatccagtgcaatgatccaagagttgaaagaaacaaactgaaccaaA
TTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGA
GATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAaagaataaagaaaactctatca
tgcaaacaaaaaccaagaagcagcagaggtcattattcttatattagataaaacggactttaaaccaacaacagtaaaaaaagaaaaatacaaagaagga
caatacatcatgataaagggatcaactgaacagtaagtgttaactgtcttaaatatatgcacacccagcactgaagaacctggattcataaaacaactac
ttctagacctacagaaagagttggctacagaataagagtgggggatatcaacacttcactgacaatgttagacaaatcattaagacagagaaataacaaa
gaaattattgacttaaattcaacaattgaccaattggacctaatagacatgcacagatcttcattcaacaaccacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 13908316 13908616 1001284 0 - pAlu5-13887951; RIP_Alu_chr5_013_02 NA NA SINE Alu Ya5 tatttacccagtaggcattcaggagctggttgttcagtttccatgtagttgtgcaattttgagtgagtttcttaatcttgagttctaatttgattgcact
gtggtctgagagactgttttttatgatttgcattcttttgcatttgctgaggagtgttttacttccaattatgtggtcgatattagaataagtatgatgt
ggtgctgagaagattgtatattctgttgatttggggtggagagttctgtagatgtctgttaggtccgcttggtccagagctgagttcaagtcctgaatat
ccttgttaattttctgtcacattgatctgactaatattgagagtggggtgttaaagtctcccactattgaagagtatgggcattaaAATGTAAGATTTAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATGTAAGATTTATGgatgaaaatctatgtggagtggttcttgttagtttacttttcatattgagtgatgcatgaggtaggtgttcagagtaatattct
gcatcatagtgagagagaagcattttttattttacttaaaattaagttaaatgtaattaaattactagtgaatcattttactgattgtacttttatgcta
taaaatgcagtacatttgaaaatttttaggttatgtgtaagcttaattttgtaattaaacatttctttaacatgttaaaaaaagtctcccactattattg
tgtgggattctaagtctctttgtaggtctctaagaacttgctttatgaacctgggtgctcctgtttcgggtgcatatacatttaggatagttagctcttc
tc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DNAH5:NM:001369:30/79
0 chr5 17959799 17960110 1001285 0 + pAlu5-17923529; RIP_Alu_chr5_017_01 NA NA SINE Alu Yc1 gaaatgaaatggcatagttttttcatagaacttttaaataatgtctatgttacttataatacttagtacaatgtaaatgctatgtaagtagttgttatac
tatattgttttagtgtgatttttattattattgcatttttttttttttaatatttagatccttggttggctggaatcagttgcgcaggaacctgtggcta
tagcgggtggactgtgtgtttcattctaattcctaacattcattttctttgtagaaagaattcttgcccactctgttctgtgttctttttgagtgctttg
ctcagatgtttctcgggtgagggattgatctagagaatataattttccattacactaagggctggatatggttggaggaacatAAGAAAACATGGAAGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAACATGGAAGGGaaactgaaggcaaatattgaaatgacagatgagatttataaaggagaaggggagtgctaacattcagaaag
cagatactagaatttcattagtttgaaagcattggcttttataaagtctttgatcaaattagtttagatagaaaataacctctttttttttttttttttt
tgagacggagtcttgctctgtcgcccgggctggagcgcagtggcatgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctc
atcctccccagtagctgggactacaggcgcccgccaccacgcccggctaatttttttttttgtatttttagtagagacggggtttcaccgtgttagccag
gatggtctcgat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 21374013 21374302 1001286 0 - pAlu5-21337738; RIP_Alu_chr5_021_02 NA NA SINE Alu Ya5 tatagttaatgatgaatgaaagaaggaagatgttaagatgttagggaaggactcaaaagatgcagtgcttgagttagaattttaagggagattatgcaaa
agcagtcacttaaggtgggttggggtaatctagaatgtgggaatgaggtatgcaaagtcacacaggagagatacagcatgcatgtttagaaaattgttaa
ttacatatggaaagtttgcaggacttgcatcctagaatgtcaggattttaagctaagtagggttcaaattaaatttttcacatacttcgctgcattataa
taactagtttatgtttaactcatccactaaactaagttatttgaaaagagatgccagtgttcactcaatctagttgtctgtcattaataatttAAAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAata
ataatttaaaaataattgagattttaattttggtctgctaagcctgtttaattaaaatttgacattaaataagattttacaggcttctaatttttttttc
agtcatcacagtttgaatattaaacattactacttttatctccctcagtcagcataaaacatactacttatggttttaataaccaaattcaatgagcacc
aacaaaatttgatgtaactattaactttgaaattttattgaaatagaactatgccttgggtatcattcaaagcatttaattgttgcaataaaaaactttg
agataaattgaaatgatggacaatatgggtcgaaagcaacattggcttgagggaaaaggctaatgtttgagaacggaattgttaatgaca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 23449523 23449824 1001287 0 + pAlu5-23413253; RIP_Alu_chr5_023_01 NA NA SINE Alu Ya5 ataggagagatgccatgtgacaacagaggcttagattgaaatgttgcagctgcaagccaaaagatgcagaggttactggcaaaccactctaaactaggca
gtggcaaggaaggaattgtcctctacaaatttcagaaggaataaggccctgccaatatcttgactgattttggactattgatatctataactgtgaaaca
atatatttctcttcttatacctactcctctcctccacatttgtactgtttagctatggtagccctaggaaactaatacactcattgatggagacttgttt
aatattggataggattacagatcccaaaacattaggaacagcatttgctgtcccctgcagtttcatcccaccatgtatttagctaAAGAGACAGAAACCG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAGACAGAAACCGcttcttgaaactgagactatgagctcttttaagttggagttcttttttcctaattaatttttaagagagacgtcaagctttga
gagcagtgtgtgtgtgtctataaggatctttgcctgccggtgggtttgctagtgacttcctatcattgataaaatactacttactttcatacatggagtg
taaatgaaaaagattaattaaatgtaaaccaatccacagtgatccaaattactaagtgattgaattaccaggtagtggattaatatatggtgacatatag
tattagttatttccaagcaattttgtggttttatacattatagcaaacttaaaattttgtaagtgtttctcttctagtctgcactcattcatttagtgtt
tt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 24127380 24127689 1001288 0 + pAlu5-24091110; RIP_Alu_chr5_024_01 NA NA SINE Alu Ya4 agatggagctggaggctagcatcttttgcaaactaatgcaggaacagaaaaccaaatactacatattctcacttataagtgggagcttgtgttacaagtg
ggaatgtgtgttgttctcccccaaccatccatgtgtccttaccacgtgtgcagggtatgcagatttattacataggtaaatgtgtgccatagtggtttgc
tgcacagatcatcccatcacccagggattaagcaaagcattcactagatgttcttcctgaccctctcccctcctcctaaaccctgccctccaacaggccc
aagtgtgtgttgttctcccccaagcatccatgagatagaacttataagatagatgaaccattattgtcacccccattttccacatAAGAAAACTGAGGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAAACTGAGGCAtagggagattaagtaacttattcaaatttatatttctagtaagtgacagagtggagatttgaacccatgacatct
ggctctggatcactatgagtaatatctcaaggggcagcttaaattctcactcacctagtattttatcaagtgacatatgaaataaagaaatataagtata
taatttattaatatcagaaatcttggccctaaatttctattttaaatgtaggatttagaacctttaataattgtaaatgtcaaataatgttagttatact
ttattaaaataagaattggcatacttatctttattatttttcatatgtatttttcttgcttcatcttcttttgtttaactccacatgtgtatgtggttaa
tacaacaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 24488610 24488918 1001289 0 + pAlu5-24452340; RIP_Alu_chr5_024_02 NA NA SINE Alu Yb7 aaaaacttcaataatgattgtatttagtatgataattcatatgtagttattcacttcaattttatattttctgtaatacaatattctggtatttttgaca
gtattactatcaaagaaaaaaagtgtgttcatatactatagtaggtaactggcttaaggaactacagaattcaatgaaagtcctcaaaagggctgacctg
ttacaatctctaattttccatgttgaaaaaaaaatcattaattttaaaaatgtgttcacatgtttaaaggcttggaaagtcaacagtgagtctttaaata
attttgtgtttttctcatcattaaaccaaatgaaattgacaggaatgagaacctctgccaaggggagacacttgttattttctgcttAAGAAAACAATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGAAAACAATAGaacttggacattttagtgtctaagacaaccaaacactcaaacttagaaaaaaaattagagtatgtggttgtataattt
tagatttctgaattccttgtataagtttatttgtaatgtagattttattaaatttattttctattgtataaatgattgcatacatgtaacagattctaat
agattattgttaaatatagtagttaagagcataaattcaggtgttaaccttccactgttaaatcttattttgataaattattatctgcatgaccttgagt
aaattaatagcacctttctcgttgagatgttacgggaattgaatgagttgacatgtgtaaatgacttataatggtctgcacgacattcagaaatcaatca
gtaaaattt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 26146960 26147271 1001290 0 + pAlu5-26110690; RIP_Alu_chr5_026_01 NA NA SINE Alu Ya5 ttacttataattgtaaaatgaaaaaagaatggatctttatactatcaacattacagatatgtccccaataaggagtaattaaaatgctagtctcacccat
gtttccagatcatagttcaactagagaaaaaaaaaaaaatcatcactcctaattatgcaaatgtgggaatattgatagacattatccttggattacgatg
ttactaagggatgaagtctgttctctgatatatatctggtgtaaaaaatttgtccttgcagaagtcattggccaatttaaagaggctttcttaaaatgtc
taaagccgacttcctgcagatcctctttctctcattaccaagtatcacactattttctctttatggtgcatatatataagctataaAACAATACATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACAATACATTACTGgcttcttcccttggacttataatgtcacctctttatttgaagcaagcatctagtcattttctttcatcttttc
acaagtgcatattatactttagttctctagataattacctctttcacttttatcaccctgcttctggctaacttccacatcacagctactatgaggtaat
atgaaccactcctaagtaaatgatattcttgaaactgctgaccagaaaattttacatccctatagaagttatagatacagcaatgccttaggatctcttt
tgaaaagtggcaaatacatctggttattctgcaaatttctaaaccctgagttatacctgtcatcattgcaggattcaaaaaagtgttcctgctctatctt
tgtatgtcaaaca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 31713199 31713505 1001291 0 + pAlu5-31676929; RIP_Alu_chr5_031_01 NA NA SINE Alu Y ggactgctttccccaaggccagagacatggcggatcctattccttcccctgccaggtgacttaactcactcccttgttgtaggcctttgtgtcccctcga
tagggtcagccctatgaaaaaaggatgaatctacctaggagcaaggccctgcttggggaaaaacaaccaaaatgaaaagtggttcatggctgataagagc
tgaaagctttgaaagcttcagttgccaggaagggttgcattactgtcaagccgaggcggtggggaatgacagcggattattgtgtcctgccctccctagc
cttgcactgggtttcaggggagcttctgggacaaaaccattcgagagtgagaccctgtctctaaaaaaaatttttatttgtttaaaAAGGAGGTATATCC
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAGCACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGAGGTATATCCatgtgatggagtactatttagtgataaaaagaaatgagctattgacacatgcaacaatgtggatgaatctcaggatcat
tatgctgagtgaaagaagcaagacaaaaaagagtacatacggcataaatgcacttatatataataaaattctagaaaaggcacgctgatctttaggggta
gaaagcagaccaacgtttagggggtcgaatggggatggtaggacagcagcagaggaggaaggggggaggaccaagggaagggagggactttgggggctaa
tgagtatgtccgttatcttagttgtaaagatggtttcatggataatgatggttttatatataaccatatgtaaagatggtttcataggttaaaagttagc
aaacctg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 61812489 61812801 1001292 0 - pAlu5-61747158; RIP_Alu_chr5_061_02 NA NA SINE Alu Ya1 tcaagtgggcttcattcctgggatgcaaggctggttcaacatacgcaaatcaatgaacgtaatccatcacataaacagacccaaagataaaaaccacatg
attatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatcctaaaaactctcaataaactaggtattgatgggacatatctcaaaa
taaaaagtgctatttatgacaaactcacaaccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggataccc
tctctcaccactcctattcaacatagtgttggaagttccggccagggcaatcaggcaagagaaagaaataaatggtattcaattaggaAAAGAGGAAGTC
GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGG
TGTGAACCCAGGAAGCAGAGCTTGCAGTGACCCAAGATCACGCCACTGCACTCCAACCTGGGCGACAGAGCAAGACTCTGTCTCCAAAAAAAAAAAAAAA
AAAAAAAAAAATGAAAGAGGAAGTCaaattgtccctgtttgcagatgacatgattgtacatttagaaaaccccatcatctcagcccaaaatctccttaag
ctgataagcaacttcagcaaagtctcagaatacaaaattaatgtgcaaaaatcacaagcattcctatacatcagtaatagacaaacagccaaatcataag
tgaactcccattcacaactgctacaaagagaataaaatacctaggaatccaacttacaaggcatgtgaaggacttcttcaagaagaactacaaaccactg
ctcaacaaaataagaggacacaaacaaatagaagaacattccatgctcgtggataggaagaatcaatatcgtgaaaatggccatactgtccaaggtaatt
gatagattcaatg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:IPO11:NM:016338:9/30
0 chr5 70226686 70227001 1001293 0 - pAlu5-70347702; RIP_Alu_chr5_070_01 NA NA SINE Alu Ya5 taataaagtgttcacagattgcatattttatttggaaaactatcaaggataattaaaggggcaagagattagctaagatataattggttctgggaacaaa
agcaatagagttccatgaagcaaagagcattcatgatttgggtgaagcggggcattcacccagaataaaagacttgctaagtttgctcaggttacatcag
ggacacatgtaatataggtggttaaatagatgggggggttaatgcccataaattcttagtccagcattctcatgatgacaggaaaagtaagaagatattg
tcctatttatgtgaaaactggcatggaaaagggagaagcaaaagagaaaattttacaatccattaattagtttcattagcttAAGATATACTCACATATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
GGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGATATACTCACATATAtgcatcatcaaaattctggaaaattaggccactactaacacagcttccaatatgttggtaaagcaa
tagttcatcaagattaaaaataacttagtatatacatttctcaggtacattttatatttttagtcaaagagcccacacaattgttttatgttgatatgga
aaagacagtgctgacccatttctcgtaaagtgagaaactagaacttttctttctttctttctttccttctttctcttttttctttttttttttctttttt
tttgagacagtttcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccaaatggctggaattacaggcaaccgcca
ccacgctcagctaatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 77140989 77141306 1001294 0 + pAlu5-77143846; RIP_Alu_chr5_077_03 NA NA SINE Alu Ye5 actctcatagactgaaatgtaaattagcaaaatcactttggaaaacagtttatgtttgtattgtctagaaaagttgaacatatgctaagctagtagttct
acttctatagttctacttctatgattatacccaagagatattcttgcatatgtgtagcagtaaatgtgaataagtatgctttagaagcattgctcataat
agcaaaaaaagataaccaaatattcatcaaagtagaatgcatgagtatcatacagcagtagaaatgaatgaactgaaactacacacattgacatgaagaa
tctcaaagacaatgtagagcaaaagaagcaaattacacacaatcacagacagcatgtttgcatttatattaacttcaaaagcagacaaAACTAAACATTA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACTAAACATTAtatcttggagagatatattcaaacatggtaaaacttcaaaagaatggcaaagaaaagattgctcaaacat
tagcccaattgttagtcctggcagggaagagaggcacaatattgggaaagaacatatggagagcaatgttttacttgttatcttggatggtggctacata
atcacttactttgttactgagaggtgaagccagctggacttcctgggtcaagtggggacttggagaacttttgcgtctagctgaagggttgtaaatgcac
caatcagcactctgcagaaacgcaccaatcagtgctctgtgtctagctaaagaattgtaaatgcaccaatcagtgctctgtaaaaatgcaccaatcaaca
ctctgtgtctgactaaag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 88067786 88068099 1001295 0 + pAlu5-88070642; RIP_Alu_chr5_088_02 NA NA SINE Alu Yb7 aggcattttgccttgtctcacagagctcacttgaacatgtagctctctttgagctcaaagttctgaaactttcttttatttggatgtttaggcattttga
gttttcttcacttgtttctttttcttttctaggactttgaattatgaatacaagcatataagactaataagcataaacagaattagtcactatggaccat
ggctaattctgccattggcataaccattttttaatctaccaaactgtcatcttctattatcccctctcctccttccatctccatatccaatgagatacca
aatcttattcatttttcttcagaaatgcctgtctctacttccactgccaccatcttagctttggcttccatcaccatttgaataAATATTTCAGCAACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAATATTTCAGCAACTCtccatctgggcctctggtctctacttgaggggttcttcaccaggccttaagaggagtttcaggccttcag
aggagttccttaaagctgtatgcaaacttttgtgcatttgtgtgatgctaaccaacccactcaaggaagtctttctgaactgctacttccatcatgttcc
tttttcatacatgagtgcttaacacagttgagtcagtgccctgcctggctctcagaactgtctacagttgacacactctatctatgaaacctaatttcca
atggtcacagcctgccttatggtcctcggaatatatgcaaatctttgctctagcagttcaataactggcagtattggctctcctgtttaattcaaattta
tcttttaaggatca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MEF2C:NM:002397:6/11
0 chr5 95935488 95935817 1001296 0 - pAlu5-95938354; RIP_Alu_chr5_095_03 NA NA SINE Alu Yb7 acatccatatccaaaaagatgaacataggcaagaaaacttcatgcctcaaagaaaaattaaccaaaaatggattgtaaacataaatgtaaaatgtaaaat
tacaaaacttttaggaaaacacaaggaaaatttgagaattagggctaggcaaagagttcttagactccatgcatgaaatacaatccataaaaggaaaaat
tgatgcattgaacttcatcaaaataaaaacgattgctatgtgaaagcccatgttgaaaaaagatgaaagacaagctacacaatggagaaaagattagcag
accgtatgttcaataaatgactagtacctaagatacacaaaaaagctatcaaaacccaacagaacaaaatgaatcaatccaattAGAAAGTGGGCAAATG
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTGGGCAAATGtgtgatgtttggataacaaatttggtgtatttccaatggaatactacgtagcaa
taaaaatgaatcaaatactgaagacaaatcatagaagatctcaaaaacattataataatcaaaacaggccagaaacaaagaatatactatatgattccat
ttatatgatgttctaaaacaggcaaaaatcatccctcatgaggaaatcagaagagtggttgtttgagaaagttggattgtctgagaaggggcacaaggga
actgtttaaatttatgtaaatattctctatcttgtttgcagtgtgagttatatggatatgcctatgtcagcattcaccaaactgtgcatttatgatctgt
gcatgtcattttttttttgagacagggtgt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 103058467 103058778 1001297 0 + pAlu5-103061322; RIP_Alu_chr5_103_02 NA NA SINE Alu Yc2 actttttgttttctaatttattatccccacactattgcttttattctctattcttctaaactgtcattcaaattatacaactaaataaatgttaaaaaat
tataatttatatctggtcttgcggtcaaagatagtttgataacataacaaagatttcttacacatttttctttagtatataacatatagttaagactgat
acagaaaccttaggatgcatttgcaggtaactagttacatatccaatctttctgtctctctatctagtcttggaacctaaaaatacagaaatatgcacct
tgctaaagacaaaagaagcacagccatgctggaatgcaagaatttgtacagatgttaaggatgtgcttcagcctggttctcgcatttAAGAATCAATTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATCAATTGTaaaaaataaagaaaattctaaagtgtatcgtcaggttcctagaaataaatagtataaagtagaggcagaaaggag
atgaaatgggggaaatagaacagaagatgaaaataaatgccaaacttggaggcattaaaataattctgtaagcatattttttacttgaggttaattctca
tttttgttaggacattctgtcttcttaatagcaaagagttgattgaccattttgaccctaatttccatcctaagcaagtcaaaaccacaaaggcaaatca
cagttattttttgtgtgaaaatagtccagatatggaccattactcttgatgcttgtatttttgtgttagaatatgtttggggaatgcctgtatttgtgaa
ccctatggttat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 116456095 116456399 1001298 0 - pAlu5-116458955; RIP_Alu_chr5_116_01 NA NA SINE Alu Yb7 catataccctggaaatttctataatcataatgcatcgattttttaaaaaaaggaaatttctttagtggagaaccttatcatctaattacttctttgtcaa
aatgatatattgacttattaattatgaaatggccccaatcaatgatgatattaatatcaatgtttgttactataatttaaatatcattattctgtgtagt
atcagtaaagtctgtcattggttgaatttgtgttttatattgatattgttctgatttttaattttaaaaatttttaaattaatttattaaaatcttaaat
tagtttaaaaattttatactctgccagtggacacatatagtaacagttgtaaaaagagtaatctggctaggagaaatgctaccctttAAATTGGAGTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTCACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATTGGAGTATGtcaccgaatggtttgcctttgcatggcctaatgaaagttagcaaaagagaacttggccacatgtgtggccctgtgggaagag
gtaggatgattttatgaaaagccccctgggctgagagccacaactcctaaatcattagttatcagtcatgtatacttgtttgatcagttcattttgtgag
cctcggtttacttattgtaatagagaaataatatttacccttcagaatgagaagctaatgatatgatgcacatggaagggttttgtgaattattaaagcc
atgaaaggatagggagttccttggcatctcagtagaagactagcaatatatgatcacctgtaatccgttaaactctgattctggcagtcgttggctttat
tgcag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 141403954 141403955 1001299 0 - pAlu5-119142738; RIP_Alu_chr5_141_01 NA NA SINE Alu Yf1 tgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaa
gaaagtcattggtagcttgatggggatggcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcat
ggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattc
ctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtatAAGAATGCTTGTGATTT
GGCCGGGCACGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGAGGTCACGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAAGCACACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAA
AAAGAATGCTTGTGATTTttgtacattgattttgtatcctgagactttgctaaagttgcttatcagcttaaggagattttgggctgagacaatggggatt
tctagatatacaatcatgtcatctgcaaacagggacaatttgactttctcttttcctaattgaataccctttatttccttctcctgcctaattgccctgg
ccagaacttccaacactatgttgaataggagcggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcag
tatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttattgagagtttttagcatgaatggttgt
t Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 146039351 146039352 1001300 0 - pAlu5-130120284; RIP_Alu_chr5_135_01 NA NA SINE Alu Ye5 gatatagatcaatggaacagaacagagtcctcagaaataacgccacatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaa
aggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattc
aagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttc
atgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggttctaattaaactaaagagcttctgcacagcaaAAGAAACTACCATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAGAAAAAAA
AAAAAAAAAAAAAAAAGAAACTACCATCAGgagtgaacaggcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatc
cagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagac
atttatgcagccaaaaaacacatgaaaagatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctctcatcagtta
gaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttca
accattgtggaagtc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PPP2R2B:NM:181674:5/10
0 chr5 158524983 158525314 1001301 0 + pAlu5-158527851; RIP_Alu_chr5_158_01 NA NA SINE Alu Ya5 ttgagaattaggacgcttttcctttccttttttaattcccagtacactgaattgaattcatcacaatccttgattgacgatgtactgtcatcatttgtct
gtgcatgtccctccttttatttagtcagtaatctaattaactattgtcaataatgtaacaagcatttatgaacccacttcccacatacaggtgaaggcct
ggagaataaaccacatctaacgacaggggcaggcctgcctatatataccatgttctcgcccctctgccccacgaaaccactatcttgaatcctgtgtgct
tcattctcttccctgcttccctttttatagtttggttttatctatatgtatttctaagtattacaaattttaaaattttgtttttaacatAAAAATAATA
TCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAatatcctacattatcatctttttggatttacttttttacctcgtgctgctatgatcat
tcatactgatttgtgggtcactatttttaacatagcactgtgactattaccacattttatcatctactttcttgttgcattggcatctgggttgttccca
ggattctggtgaggtgaactgttctacgaacattcttctacatgtctcctactgtacacatgcaagagtctttgaatatatacctatgaggagatcatgc
caaactctcttccaaagtgactacaccactttacactctcatcagtaccatgggatatcctgtggagctgcaacttcccccatcataggtattggcagat
tttttccctcccctttctatctccttcctttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RNF145:NM:144726:8/11
0 chr5 160363893 160364214 1001302 0 - pAlu5-160366767; RIP_Alu_chr5_160_01 NA NA SINE Alu Ya5 gtgaagctaccatagaagttcaaagattggtcagcctggtggtccttgaccccagcaaagccacaccataccctccacaaacacctgcagcagaggccac
tgagacacttatagacaccgtgaacattgaatacagccataaaaaaaaatcacataaagagtatactactgcacccacccagaaccaagtcaaaacatcc
taccaaacatactatggacacatatacaggaaaaagtcttttcctatgaaagctacttcataaaattagaagctgttggtccactaagtacatagatatc
aatgtagaaacaaaagaagaaaaaaaagaaaaagaaaacatggcactttcaaaggaacagaataattctccagtaacagatcccaataaaaAAGAAATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAATCTatgaaatgtcagaaaataaatctgaaataatgatcttaaggaaactctgtaggatataatacaatacaa
agaaacaattcaacaaaatcagaaaaaaaaatcatcatctgagtgatatattcagcaaagggatattataaaaaataaccaaatggaaatatttaaacta
aataatttaatgaataaaataaaaaatgaaatcaagagcttcaataatagagtagagcatgcagaagaaagaatttctgaacttgaaaaaggtgttttga
aataacccagtcagacaaaaaagaaataaatttattttaataaatgaagaaagcctatgagacttatgggacaacattaagcaaacacattttacattgt
ggaagtttcagagggtgaacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 89896192 89896498 1001303 0 - pAlu5-89899055; RIP_Alu_chr5_089_01 NA NA SINE Alu Y gcaaaagctaatgggtagagagcttcttttggaggtgatgaaaatgttctggaatagacagtggtgatggttgcacaactttttttttgagatggagttt
tgctcttgttgcccaggctggagtgcagtggcgggatttcagctcactgcaacctctgtctcccgcgttcaaacgattctcttgactcagcctcccaagt
agttggcaatacaggcgcccgccaacacgcccagctaatttttttggatttttagtatagacagggtttcaccatgttggtcaggctggtctcaaactcc
tgacctcaggtgacccgcccaccttggcctttcaaagtgttgggattacgggagtgagccaccacgcccaggccacaactttttaaATATATTAAACGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
TATATATATATATTAAACGCCatggaaatgtgtactttgaaaggtgattgtttttcatatgtgaattatctatcaatttaaaaaacaatcaaacctctgc
acttccagctatctctttctcttctttcaacatttccagccaggttaatctaatacgtgtctgggacaaaacacttgtattattcatgcttctgcacctt
taatctaagctagtcccagtcctctctacctttttccactccctctcttccaccatttttcaaagtcccaatcaagtcccactttttccagaacactctc
caaccttagcttactagtctgccagagaaggaacaagctctcttcatttcattcctgctcatcaacactgttgaaattagttaaataaaactaatgattc
taactat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GPR98:NM:032119:1/90
0 chr5 11392039 11392349 1001304 0 - pAlu5-11371677; RIP_Alu_chr5_011_01 NA NA SINE Alu Ye5 atttgtgattaggtttcagcctacaaatctagggggtcacaaacattcagaccatagtggctgccataatagattaccacaaagtgggtggcataaacca
ggagaaacttatcatctcacagttctggaggctggaagtctgaaatcaaggtgtcagcaggaccatttcccttcaaattcagtttttcctgtggcaatac
catctgttcctcaccatgtaccagccctcacctcctcccgcggtactgcttttgtcacatctgccttatttccccatagcatgatggtcatttgtagatg
tccctttccctctcacacaactttgaaagctcattaaaaaatgaggctgtttaaaaaatgaggctgtttaatgaaagctcattaaaaAATGAAGGAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATGAAGGAACTGtgtactcagccctcatagccaagagggaagataggaagaagggagagaagactccaaggcaaaaagacctttttgt
tttataaaacttccttttcaagagttcttttatcagtttaaaagaaagtaatgttcacacacagtatttgtctgtgataatattgatttttttcagtact
tataataaacaattgcattccaaaataacaactcatttctaatgctacctaaatatacccacctaatttatactaaggcaggttctggcataggggcctc
catgatatcatgtggtcaagagtaatgagagacaggcaatcatgcctgatgcatagtcctacccaaagtactagttacttaattcctcgttagcaaatac
cccatcctttg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CTNND2:NM:001332:9/22
0 chr5 62740208 62740517 1001305 0 + pAlu5-62674875; RIP_Alu_chr5_062_01 NA NA SINE Alu Ya5 atttttattttgtcaaaattaggaacattttctcttccaaataaagtttctttttagaaaatggaaaagcaaggcagatgagaaaatatttgcaaaacat
atctgataaattacttatgctgcattatatcaaggactctcaaacttcaataagataaataataaaaggaatttgcaaatgattttaacacatttatcaa
agaagatatacagatagttaataaatacataaaatatcacaaattcactagtcattagagaaatgcaaattaaatccaaaatgagataccactgtacatt
ctttatagtgggtagaaataaaaagcctgatcatgtaaaatgctggtgagggtgtgaaacaattttaactcttaggtaatgctgattGAAATATAAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATGCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAAATATAAAATCatacaactttggaaaacagattatcatgtttaaaaaagtgaaatatacacgtttcttccactcttaggtattactta
atgaagataaatgaaaacatatgcccacacaaaggaatgtgaatggaataaaaaagacaagaaaactatgattcaattccataaaattccagaaaatgca
agcttgcctgtcataactgtaagaatatcagtggttgctggagacaaaagacaggtgatgacagggaagaatagctgtattacaaagtggcatgaaaata
cttcttggagtgatggatatgtttatttccttgattgtagtgatggatttacaggtatgcacatatgttaagttcacgaaattttacactttaaatatat
acactgtgct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 168675118 168675338 1001306 0 + pAlu5-168677982; RIP_Alu_chr5_168_02 NA NA SINE Alu Ya5a2 ataaaggagtcgattcatcaagaggacacacaaatcctaaatgagtatgcatccaacaacagagcttcaaaacacataaaaacacataaaaagagaaatt
agtagaacaaaaaggacaaatagacatattcagaattatagttggagatgttaacactcctattgcagtaattattggaacaagtagacatgaaatcggt
aagaatctatatgagagacttgcaaaacactagcaatcaaataagcctaactgacatttggagaactttctacccagcaacagaagaatagacattattt
tcaagtctacttggaagatccagataaataatagtctgaagcacaggacaagtttcaataaatttaaaaagagtgaaattatataaaAATGTTCCCTGAC
TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAG
GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAA
AAAAAAAAAAAAAAAAAAAAAAATGTTCCCTGACcaaaacagaattgaactagaaatcaaaaacacaaagatatgtggaaaatcaccaaaaattttgaaa
attaaatcatattcttctaaataaatcatggtcaaaggagaaatcacaagagagattagaaaatattttgaatggaatgaaaattaaaatataatatttt
aacattcgtggactgaagctaagatagtatttagagggaacattaaggcattaaatgtttatattagaaaagaaggaaggtttaaaatcaataacctaag
cttccacattcagaaaccagataaagaagagaatgttaaatccaaagtaaacaaagtaaggaaagaataaagagcagaaatcactaaaattgaaacagaa
atgcaatggttttgaaaagca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 172632854 172633165 1001307 0 + pAlu5-172635719; RIP_Alu_chr5_172_01 NA NA SINE Alu Yg6 cataatcaacagtcggcctcataagacaccgtaggctctcgatagctgggtgaaggcaggaaggcagctcggctccactaagacatctagggccccaggc
tcctcctatcttgttggtcaccagcctgtgtgatgggagaaagagagatagttgagggtaggcaatttcctttccaggaagagatgtgggaatcagacac
atcaagtcttctcactgtcattggtgaggacttggtcagggaccacccctaactgcaaagaggtctgggaaatgtaatctctgctggggcagccaggatg
cagcctggggttttattattaaaaagaaggggaaaatgagactgggggaaaatgaaagtcttcggccacggggacttttaaaataaAAGAAGGGCTAGAA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACG
GTGAAACCCCGTCTCTACTAAAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGGCAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAGGGCTAGAAattgttgactgtaccagactatcttgcagtcttttattttagctaaactcatacaactctgttactatgggaat
aattgaaatgctatagtagtaatggtattattataatagcattatctctgttttcctgtagttatcactcaataaactgccttctctcaggtgagcactc
agttgtaacatccaattattcgatttggcagtttgtcaaatgacatccctgtcatatactttcttaggtgctgggtgcttacaaaaagggcaaaggatag
agccgctgctccccagacgactcaaaatgactttcatgtggaacacaggaggagtgagaagggcctcccatttatttaccatctactaagacgttgtgtc
cctgtcacgtac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 177313971 177314265 1001308 0 - pAlu5-177449513; RIP_Alu_chr5_177_02 NA NA SINE Alu Yb3a1 aggtgtggtctcctttagtaggtattacccaggggttttccaaagtagttgtgctattttacattcccaatagtatatgaagtttcagttactccacatt
cttgcccaaacttggtatcaacagtgtttttaattttagccattctggtaggtgtaatattgatttctcactgtggtttaaatttgatggcttatgaggc
tgagcatgttttaaatgctttttggccatttggatgttcatttgctctttcctctccctccttccctccctcctccctccctcccccctcctccctccct
ttcttctttcccttttgtgtccctcttcatttctttcacccattgtcctattggtctgccagcttttttcttaattttttaaaaaatttatTTTACTTTA
GGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCATGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAGGCAGAGCTTCCAATGAGCTGAGATCACGCCACTGCAATCCACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAATTTAC
TTTAagttctgggatacatgtacagaacgtgcaggtttgttacataggtaaacatgtgccatggtggtttgctgcacttatcaacccatcacctaggtat
taagcccccgcatgcatttttattaacttacaggaattctctttatactctacatgtaatttatcttttcaccctcctccattccccacctctttttttt
aagagacagagtctcaccctgtcacccaggctgcagtgcagtggcacaatcatggctcactgcagcctcagcctcccaggctcaagtgttcctcctgcct
cagcctcccaagtatctgggaccacaggcatgcaccaccatgcccagccaatttttcattttttgtagagacgaggtcttgctaagctgctcagg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 57958938 57959100 1001309 0 + pAlu5-57893600; RIP_Alu_chr5_057_01 NA NA SINE Alu Yb8 atcacctggattgctctcaccaaccactggtaaattttaatatgcccaagtgcagtgagctgtgttgttgaggtgtttcctggtgttttggagccatcta
tgcatttaaatagagtcatcaactgcacaggaaaggcaaaaccatacagcttatttattaaatgctcataaaattgatgccctgccctagagcaaaacaa
ttataaatcactggatccacagagagctgtaattcacctattgggatatgatttcctcaggatattgcctactgatgtcagcagcttctggtctaagatg
tgagctgtgtccatgccaccaggtcacctgtagttatttttctattgattcatttacagttatactgaactgaccagtttttctggcattAAACACAGCT
ACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGAC
AGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAGCTtaaattcggtgcaaattaagcatttaa
ttaccccatatttatttttcaagccagacttaagaaaaaagtacagcatttttctagttggatagtacttattttcagtagtaggcatattcttcttttt
ccttgtgcttttactttcctaacactaattttgctagtcctgaacattgccactgtggcagctaaacagcgagataagagatagcaaatgtgagcatcac
ttgatacaaatcactttgctgaaggtgctgatgcatatgaagggaaggaaagcaaggtctccatcttgttttactatctctggagcaactaaatcaattt
aaaaatgtttacaaagcatcggggccaggcgcaaaggctcacgcatgtaatcctagcacattg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RAB3C:NM:138453:2/5
0 chr6 9020296 9020607 1001310 0 - pAlu6-9065197; RIP_Alu_chr6_009_03 NA NA SINE Alu Yg6 caatgcctgaaactttcccagagttggtccccaaaaagtacataaagctaaagattcaagaagctgagaaaatctctcaaataggataaatccacagaaa
tcgagatcaagagatatatcactgtaaaacttttgaaaagaaaaggaaaaagtcttgagggcactcaaaggaggagaaaaaagaaaaaaggaaggaagga
aaagaagaaagggagggaaggaagagaaaagaggaaggaaggtagagagaaaaaaacgggagggagggagtgttgggagaaggaagacagcagagatctc
atcagataccacagaagtcagaaggaaatgacacacatttttcaagtgctgaaagaaaagaattgtcaactcaaagttctatgtcaattAAAAATATCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATaggaatgaaggagaaatcaatgcactctgtaatacaataacctttaaaatatgtaaaatgtatataatagtatatattttca
ctgaatcataaaagtaagtatgtgacatttttgctttgccctggtaaaggcatcattaaactgcaaatacttcattattcttaatctttaaaataactat
tattgctttttaaaattattaaaaatatttcattaatgacatataactaatggttatgcttttccttgatcttttaaattacatacactgagagctgttt
cgtgtaacacactaacacttctctgtgatagtacagatacaaacatgctatttataaaagttaaaattttcagattttttttcaagaaatttggatactt
tgtgaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 11664093 11664398 1001311 0 + pAlu6-11618553; RIP_Alu_chr6_011_01 NA NA SINE Alu Y attatttttgaaaaattttcagcatctttcccttcaaatatcttttcttctccattgtctctttcttattctggactccaattacatatatgttaaacca
tttgaaattgtgccatatctttttttctaaacttctagcattttcatttggctctcagaatttccatctctactgaaattcccaatctgttcatgtgtgt
tgtctgcttcttccactagagactttaacatattaacaataattattataaagtctctgtctggttattctacaaactgggccatctctgactctggttc
tgtagattgctttatctctcaacagtgagttgtttttcctgtttttgagtgcttcttttaattttttgattgaaaaagtctcactaAAGACTGAGGTACA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGACTGAGGTACAtcgtgtttatgtctggagatggtctgttgcttccgttagaccaatagtgagaattgatttaatctacttaggagttgagc
tgaatttgaattttgttgttgtggttaccttcagtgcactgcacgcttcacattctgtaaggttgctgttgttgccttgtgcttagggtgggagctctgt
actgcagggttattctcagtggcaatgctccattgtagcttttagccatttcttcacaactatgcctcaaaaggggtctctctccacacactagcctccc
cccagtggtggaatgctgatgcttgttacttgctgctaggctcctgaggggagctgtcctgtttctgtgttaggcatgctctgtgtatggggatctcagg
aggtgg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TMEM170B:NM:001100829:1/3
0 chr6 23793982 23794293 1001312 0 + pAlu6-23748441; RIP_Alu_chr6_023_02 NA NA SINE Alu Yb7 cttgcattttgtaatatggatggcctttactccagttttcaataatttattcctcatttccatctgataccccaacagaatggccttcacggtccatatt
tctaccaacattctggtgacaaatcacttacgtaatctctaagaagttccttactttccctacagcttttcttttcttctgaggtctcaccagaatcacc
cctaatgctccatctatggcaatgcaggcttttcctagcacactgttccaaactcttctagactctacccattacccagctccaaagctgcttcttcatg
ttcagttatttggtatagcaacagctctacttctgggattgttttgtgctgcaagagcagaatacctgagactgggtaatttattAAAAAAAAAACAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAACAAAAAAAAAACAGGAatttatttcctcacagttcttgggactgagatgtcaggatggagaggctagcttctccatcttgaaggccttc
ttactgcatcatcccataatggaagggcaaagagagagagagagagcaacagggtgtcaaagtcatccttatataaggaacccgctctcacaataatgag
cccacctccacaataatggcataaatctattcattagggtggtgccctcatgatccaaacaccacctgttaggttttacttcccaacacgtacacattgg
ggatcgagtttccaacacataaactttggggaacatattcaaaccatagtatgatcttagcaaactcatccctgttctacctgttccagacaaggaataa
ttgaagtataaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 30106475 30106476 1001313 0 + pAlu6-30058815; AluyHJ;1104685373436; RIP_Alu_chr6_030_01 AAGAAACCCATAACTCACTTG;NA TGTGTCCAGGTTAAACTTCAG;NA SINE Alu Yb7 tcagcgtgtagttttttgttgttgtatccttccctggttttgataacaaggtaatgcttgcttcctagaataaatttgaaagaactccttcccccttcaa
ttttttggaatagtttcagatgaattggtgtcagtctctctttaaatgtttggtggaactgaacaatgaaggcatccagtactgggcttttctttgttgg
gagactttttattcctgattcaagctcattactcattattggtatgctcaggtttttaatttcttcttggttcattcttggtatattttatgtgtccagg
ttaaacttcagttgcctttataatctaatgagagctatggaccaaaattttgggtaaagcactttccgtggcagttagattttttaaaaaAACTTCTTTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTACGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTCTTTCattgcccccaccttttttgttgttgttgtttcaagtgagttatgggtttctttttaactgaa
ttgtataagcaaaatatctccaagtagccttgaattagtaacaaatcaatcttttgtttaccagtcttgtttgcttaattagcaaatgtggggagggaag
aattttagctgtttttttttcttcacctttttctttttggcttttgcatggcacaaaaaacaaaatttttctgttgaacagggataccttctattattgc
tctgagatcaagattttgacctatttggtctgagagcctaacttttataaacatttatttttttttcttttatgttactaatttttcaattaagtgtttc
attattgtacacagttgttagggaaacc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Dunn DS, Tait BD, Kulski JK. The distribution of polymorphic Alu insertions within the MHC class I HLA-B7 andHLA-B57 haplotypes. Immunogenetics. 2005 Jan;56(10):765-8. Epub 2004 Dec 8. PMID:15592666.
- Dunn DS, Romphruk AV, Leelayuwat C, Bellgard M, Kulski JK. Polymorphic Alu insertions and their associations with MHC class I alleles andhaplotypes in the northeastern Thais. Ann Hum Genet. 2005 Jul;69(Pt 4):364-72. PMID:15996165.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 68;NA 501;NA 173;NA MHC related;NA intron:NCRNA00171:NR:026751:5/6
0 chr6 41512055 41512361 1001314 0 - pAlu6-41405388; RIP_Alu_chr6_041_01 NA NA SINE Alu Ye5 ggtgagctgagatagcgccattgcactgcagcctgggcaacaagagtgaaactccgtctcaaaaaaaaaaaaaagaaaccgataaccataatagctgaca
aaacctgcgctgtttggctcagcatcatgaacgcttgttataacaccctgcatggagtgggtgcttggggagggtcggtggtgccactgtgaggagatac
ctggtcttcaggctggcagcaagcagaggcctgggaaacctcagtgcagcagtgtgaccaagaaagaacgaaagagtccggcaggagtgaggagcagttg
ccagaacatgtgagcaaccaagaacacctttagaggaggtaagtgggaccaagttttattttaatgttttaacatttttactctAGAAATTTCAAGCATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAATTTCAAGCATAtactaaagtagacagaacagtatacacagtccctatgcatcccatcacccagcctcaacatagagcaattcatggtc
aatcttgtttcttcttcttcttctttttttttttttgagacagagtctcgctctgttgcccaggctggagtacaatggcgcgatgtgggctcaccgcaac
ttctgcctcttgggttcaagcgattctcctgcctcagcctcccaagtaggtgggattacaggcgtgtgacaccacgcccagctaattttttttgtatttc
tagtacagatggggttttgccatgttggccaggctggtcttgaactcctgacctcatgatccgcctgcctcagcctccccaagtgctgggattacaggtg
tgagcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 42061343 42061643 1001315 0 - pAlu6-41954677; RIP_Alu_chr6_042_01 NA NA SINE Alu Ya5 ttctgatgacattttttacagaaatagaaaaaacaatcctgaaattcatatgaaaccacaaaagatcatgaatagccaaaacaatcttgagcaaaaagaa
caaagctggaggcatctcactacctaaattccaaatatactgtaaagctatagcaatcaaaatagcatggtactggcataacaatagacatatagaccaa
cggaacagaatagggaacccagaaataagtccacacatttatggtcaattgatcttaaacagagctggcatgtatgcacactggggataggacaatctct
tcaataaatggttttgggaaaactgcatatccacatgcagaagaatgaaatcggacctttatcttagaccacctcaaaatagattaAAGACTTAAACTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGACCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGACTTAAACTGGccaggcatggtggctcacgcctgtaatcccagcactctgggaggccgaggcgggtggattacctaaggtcaggagtccgagacca
gcctggccaacatggtgaaaccccgtctctattaaaaatacacaaaattagccaggtgtggtggtggacacctgtaattccagctgctcggaaggctgag
gtaggagaatctcttggacccgggaggcggaggttgcagtgagctgagatcaagccattgcactccagcctgggcaacaagaacgaaactccatctcaaa
aaaaaaaaaaaaaaaaaaaaaaagacttgaactgagacctgaaactgtaaaactactggaagaaaacttagggagaaagcttcttgacattggcctgggc
a UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CCND3:NM:001136017:1/5
0 chr6 109966821 109966876 1001316 0 - pAlu6-52728751; RIP_Alu_chr6_139_01 NA NA SINE Alu Ya5 atacagcacactgatgggtcttgactctatccagtttgccagtctgtgtcttttaattggagcatttagcccatttacatttaaggttaatattattatg
tgtgaatttgatcctgtcattatgttagctggttattttgctcattagttgatgcattttcttcctagcctcgatgatctttataatttggcatgatttt
gcagtggctggtaccggttgttcctttccatgtttagtgcttccttcaggagctcttgtagggcaggcctggtggtgacaaaatctctcagcatatgttt
ttctgtgaaggattttatttctccttcacttatgaagcttagtgtggctggatatgaaattctgggttgaaagttcttttctttaagAATGTTGAATATT
AGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTTGGGGGGCGGATCACGAGGTCAGGAGATAGAGACCATCCCGGCTAAAACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGAGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCAGTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATG
TTGAATATTggcccccactctcttctggcttgtagagtttctgcagagagatcagctgttagtctgatgggcttccctttgtggataacccaacctttct
ctctggctgcccttaatattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcaaggagtatctttgtggcgt
tctctgtatttcctgaatctgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattc
tccccgtcactttcaggcacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcatttctttttattctt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:AKD1:NM:001146303:3/5
0 chr6 88376977 88377289 1001317 0 - pAlu6-88270309; RIP_Alu_chr6_088_01 NA NA SINE Alu Yb7 caagtcctaggatctgggctgggtgcgatggttcatgtctgtaatcccagcacgttgggagactgaggagggcagatctcttgaggccaagagtttgaga
ccagcctgggcaacacggcaaaaccccatctctacaaaaaatacaaaaattagccgggcatggtggtgtgtgcctatagtcctagctacttggggacctg
agaagggaggactgcttaagcccaggaggtggagggtgcagtgagccaagatcatgtcactgcgctctagcctgggtgacagagccagaccctgtctcaa
aaaaaaaaaaaaaaaaaagaaaagtcctaatatatagaactcttagaatcaatgaaggaaaaaagatcctatcaaagtagaaattTAAAGTATATTAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA
AAATAAAAAAAAATAAAGTATATTAGTAaattagctgggtgtggtggctcatgtctgtaatcctagcactttgggaggccccaaagagcactaaggaagg
cagatcacctgaggtcaggagtttgagaccagcctggctaatatggtgaaaccctgtctctactaaaaatacaaaaattagctaggcgtggcagcgggca
cctgtaatcccagctacttgggaggctgaggcatgagaactgcttgaacccgggaggcggaggtggcagggagttgagaaggcgccactgcactccagcc
tgggggacagagcgagactctgtctccaaaaataaaaataaaaataaagtatactagtaaattatttaacacaatatatagctttaggcaaatgtagcta
taactattaaaac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ORC3L:NM:181837:7/20
0 chr6 114862205 114862516 1001318 0 - pAlu6-114755536; RIP_Alu_chr6_163_02 NA NA SINE Alu Y atggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctatcaatggtttcttcacagaattggaaaaaactaaagttcatatgga
accaaaaaagagcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggctacagt
aaccaaaacagcatggtactggtaccaaaacagagatgtagatcaatggaatggaacagagccctcggaaataacgccacatatctacaactgtctgatc
tttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtAGAAAGCTGAAACTGG
GGCTGGGCATGGTGGCTCAACCCTGTAATTCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGCCGGGCACGGTGGCAGACACCTGTAGTCCCAGCTATTCGGGAGACTGAGGCAGGAGAATGGT
GTGAACCCGGTAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCTTCTCAAAAAAAAAAAAAAAAA
AAAAAAAGAAAGCTGAAACTGGatcccttccttataccttatacaaaaattaattcaacatggattaaagacttaaatgttagacctaaaaccataaaaa
ccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacagcaaaagcaatggcaacaaaagccaaaattga
caaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacagacaacctacagaatgggagaaaatttgtgcaacc
tactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggtgactcaaaagaa
gacatt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 163183921 163183922 1001319 0 - pAlu6-117139445; RIP_Alu_chr6_163_03 NA NA SINE Alu Ya5 caaagcctccaagaaatatgagactatgtgaaaagaccaaatctatgtctgatcggtgtacctgaaagtgatggggagaatggaaccaagttggaaaaca
ctctgcaggatattatccgggagaacttccccaatctagcaaggcaggccaacgttcagattcaggaaatacagagaacgccacaaagatactcctcgaa
aagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaagaaaaaatgttaagggcagccagagagaaaggtcgggttaccctcaaa
gggaagcccatcagactaacagcggatctctcagcagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaAAGAATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATTTTCaacccagaatttcatatccagccaaactaagcttcataagcaaaggagaaataaaatactttacagacaagcaa
atgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagcgctaaacatggaagggaacaatgggtaccagccgctgcaaaatc
atgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaactaacgaacaaaataaccagctatcattataatgacaggatcaaattcacacat
aacaatattaactttaaatgtaaatggactaaatgctccaattaaaagacacagactggcagattggataaagagtcaagactcatcagtgtgctgtatt
caggaaacccatctca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PACRG:NM:001080378:3/6
0 chr6 159572116 159572415 1001320 0 + Yb8AC880; pAlu6-159485453; RIP_Alu_chr6_159_01 ACAAGAAGGAGGAAGCAGGTAAG CATGAATACACCTGGTGCAAAT SINE Alu Yb8 gttttcttttctacttcctcacatttatgctggatattggcggcttttccttcattatgtgctatgaagacccatggtagactgcaatattagacaattt
tgtcatggaaaaatctgtgaaatggatgacatttgcccctccggcactctcactgcaatataggttcctctcccctatagaatctcttccctcagtcagt
ctgctctgaagacagggtgattacagtacatttaatatactgtttgcctatcccaggagttttttttttattttaagccttattttagaattataaatgt
gtccactattaatggaattttaaacaagaaggaggaagcaggtaaggacatgctatgggaagagggaaatttttgtactgccttAAAAATTACAAATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AATTACAAATTGGttgctcgtcacacattccccatcactttgagtatagattattcagcaatttgcaccaggtgtattcatgtttcttgtctattaagga
cagctataatgcatttgtaatacactgacaattagttttattaagaaaatcctatataagattttgcatttataaaataaatgagttacttcaaagtact
catttcagaatttcttcaaataataagatgtggcataacctggttcaatagagattcaattcacttatattttctaggactatatttgttacttaaagca
aaatataagttttaaaaagaatgctatcgttgagaaaacacgtttccagtgttctaaggaattagaagttagccattatgactactgatttgaaatgcct
UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 459 146 NA intron:FNDC1:NM:032532:10/23
0 chr6 6222355 6222601 1001321 0 + pAlu6-6267254; RIP_Alu_chr6_006_01 NA NA SINE Alu Ya5a2 taaaattggcattccagaagatgaggattaaacaatagtgtgtgtgaagggcatttcataaactgaacaaattattattctccgtattatatggtgtctg
atggctataatagcaaagaaatcttactaaacttattttatttttatttctgagcataaccacacaggtagtgaataaggtgtgagaactaaaagtaaaa
tcttatccccaccccactcccaaccaactgtacagactctttcttggctaaggggaccccagagaaaccttaaaaactgagccgcagccatgatgggatg
ggaggtggtacacacctcactatattccctttccttttgctgtttagacaaaattgaacagaatcaatgttaaaatagagatcatAAGACTGACACTGTG
CAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAG
CTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGC
GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTGACACTGTGgcaataaaatatataattataaacaagacccaaggcca
caccaggcaaggattaagtcatgaacccctgcatttaaagaataaactatgttctaactgccacaaagtttttctttttgtctagcagctaaacaagccc
tggtctcaagatgagcaatgttggaacaactacagttcatccatcaccagatgctgactaactaactcacattccaccagccacaactacagttttgatt
gcgtaagagactgatttcagcatctttctcctggtaagagactatcaaccatggactggttctggacgatttaccgaagctgcacactacaatgcattcc
tgtccctgcttcaccttttgatgtatagggcctaactgaagcacata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:F13A1:NM:000129:3/15
0 chr6 17580263 17580561 1001322 0 + pAlu6-17534722; RIP_Alu_chr6_017_01 TACCTCGATAGTCTCACTTC GTGTTGGTAGTGAAGAGAGCCAAC SINE Alu Ya5 aaacccgtctctactaaaaatacaaaaatttagccaggcatagtggcgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaa
cccgggaggtggagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagccagactccgtctcaaaaaaaaaaaaaaaggtttca
ttctttgtatcacgcttagttatgtttcagtttagccatttagccgtggtatttcccagtggtctggattgacagtttcaggaaggagtagcaccttaga
atctaaaccagtgactcactttatgagcttttccaaattacctcgatagtctcacttcataaatatgcgtaagtttctgctctgttAATAGTGCTGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATAGTGCTGAATGGGggttggctctcttcactaccaacacaaaagcacccaaaggcaatatatgcttttaatttctggagaagtgtattagtttaagttc
aactaaaatatctgcttaaatataatttatgtagtataggtaaaaaccaattgcattctgatacttacaagattgcttttatgtaaacagcagctttctg
agtagcagaaggtggagaagtgaggcaaaaagaaggcttttttccttttcctatgagccttccaatggcaagagaattaccttggtaattacatggtggc
tagcatgtgacggctactgcccgtgctggatgtagatgctggttaacacacaataaaacaccaaggaaggaaggagaggcaggggtttgtgtgatatcat
c UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA NA 400 102 NA intron:CAP2:NM:006366:4/13
0 chr6 68316922 68317226 1001323 0 - pAlu6-68210256; RIP_Alu_chr6_068_01 NA NA SINE Alu Yb3a1 tagttctagatccttggggaattgccatactgtcctcgacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttcttcacat
cctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgg
ccagtgatgatgagcattttttcatgtgtctgttggctgcataaatgtcatgatcaagtgggcttcatcccggggatgcaaggctggttcaacatatgca
aatcaataaacgtaatccagcatataaatagaaccaaagaggaaaaccacatgattatctcaatcgatgcagaaaaggcctttgacaaAATTCAACAGCC
CTGTCCAGGCGCAGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACAAGGTCAGGAGATCAAGACAATCCTGGCCAACAT
GGTGAAGCCCCATCTCTACTAAAAATACAAAAAAATTAGCTGGGTGTGATGGCAGGCACCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGAAGAATGG
CATGAATCCAGGAGGCAGAGTTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCAGTCTCAAAAAAAAAAAAAAAA
AAAAAAATTCAACAGCCtttcatgctaaaaactctcaatatattaggtattgatgggatgtatctcaaaataataagagctatttatgacaaacccacag
ccaatatcatactgaatgggcaaaaactggaaacattcgctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgtt
ggaaattctggccagggcaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgatt
ttatatttagaaaaccccatcatctcagcccagaatatccttaagctgtattagttttaccttaaattaaaatatactactagagcaaattacttttaga
caaag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 77976840 77977132 1001324 0 + pAlu6-77870174; RIP_Alu_chr6_077_01 NA NA SINE Alu Ya5 aatgtgattactccagtattgttccttttgctcaggatggctttggatattctgggtcttttgtagttccacttaaattttaggatttttttctatgtct
gtgaaaaatgtcattgatatttggaagggattgcattgagtctgtagattactttgggtaatgtagacattttaccaatgttgattcttccaatccacaa
acatagaatagttttccattttttcgtgtctgcttcaatttctggtatcaactttatagttttcattgtagataactttccctcctttgatttagtttat
cgctaggtatgtgttttttttactttgtaaatggaattactttcttaattcctttttgggttgtttgctgctggaacataaaAATGCTACTGATTTTTGT
GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATGCTA
CTGATTTTTGTatgctgattttgtatcctgcatttttattgaatttgtttaccagtccaaatacttttttggtggagtctttagatttttcagcagtaac
atttttgtgtgtatatttctatcccaaatcaatttattactacgacgttatgctttttggtatttcttttttaaaagagcagttaatggatgttgtagaa
aagcaaagctcaatttcaccttccatttttaaaataaaggcataaaatcattgtcctgtgattgattgttcacaccttttagtttcaacttttagttttc
ttaaaatttttgatacaagatatttaattgcaacatagttgaaacatttagcatggcaccaagaagtttatttgtttattttttcatttgttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 107231226 107231527 1001325 0 + pAlu6-107124562; RIP_Alu_chr6_107_03 NA NA SINE Alu Yb7 ggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggcctcaacacatttt
caatagaatcatggtaatcattagttttgttagtcaaatatttccagttctctccagtttcagaccctcttatggttaggtgggatcttgtgtttagttc
caaccaatgcatcgtaagtggaagtgtcatgtatctgggccagagtttgctaggttgatatcctctagggttttcttctccctccagcaatgttcaaaat
ggtggccgctctatcagcccaagtccctgagtgacttaagtgtcagagagctctgtcaacctaatggatgggtagcacaagcaaaaaatAAAACTTTTTC
GGCCGGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAACTTTTTCcacttttgttgttttaagctgctgaattttggggtggaatgttagtgaagcataacatggcccatcctgagcatctaccagtcactg
tctttccgacttttcattcactggtctgcttttcaaaccaacccaatagtaccatagatagttttgggttttttggggggtttttttgtttgttttttta
aatgaacatagaaattgacccttctggccttaaagcttgaaacttatatttgttttatctgagtccctttctcagtaaccaccttcaggcctctcaaaaa
aaagtttcaaagaactgaaactctccagatcaccatatccagacaatgagatgccagacccctcaggacccctcattcattgtgattgcttccttgcccc
tc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 145662616 145662617 1001326 0 - pAlu6-107487595; RIP_Alu_chr6_018_01 NA NA SINE Alu Ya1 aggagttgataccattccttctgaaactattccaatgaatagaaaaagagggaatcctccctaactcattttatgaggccagcattatcctgataccaaa
gcctggtagagagacaacaaaaaaagagaattttagaccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccaaatccag
cagcacatcaaaaagcttatccaccatgatcaagtgggcttcttccctgggatgcaaggctggttcaacatatgcaaatcaataaacataatccagcata
taaacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgagaaaattcaacagccttcatgctaaaAACTCTCAATAAA
GGCCGGGCATGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGATAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGACTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGAGTTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AACTCTCAATAAAttaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaactgg
aagcattcccgttggaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcagga
gaaagaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagcc
caaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaaagtgcaaaaatcacaagcattcttatacaccaataacagacaaa
Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 159586767 159587074 1001327 0 - pAlu6-159500102; RIP_Alu_chr6_159_02 NA NA SINE Alu Ya1 aagcccctcacatgtgaactcccctgttcatcagtcttcattcctccacctcctccatcttgcttctggaatattctagaagagggtaatttcctacctc
ttctacatcccaacttggcaaactctaccaatgagagttccttgtgcttctccacttcctactgagttcccacccactctcactgactcaggagataaat
cagatttcttaatttgcataggaaatttggaaacatatgccaatcattgcaaatttccctttacagattgggctgtactaaccaatagatctattttgac
tacagaattatactttaaatgtaatataaaatttcagatgtgatttttggaaaagccaggaaaccctggttagaagaactattaaAATTACCATAATGAC
GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACCTGGT
GAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAAATTAGCCGGGCGTCGTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAATTACCATAATGACtaaactgatattatgagcataagtaacatatgagtgatttaagaaaggtgagtgatttaagcataaaaggcatcttc
acctccattatcagggtagtttaagcagaagtcttttgggaaagatgtgatggaattgattatactatttctctacttgggagatacagatgtagctgta
aaaaggagaacatctcactgtagctgataaaatcttgaggcaaaaggttttatagctaaaaaaaaaattgtaggaattcctttcctccctttgacctgaa
gcccacagcaattaaatagaactctctaaacttaatgcaccctcaaaagggggcaaggtggggaaaacaggaagaagtgactagtggatgatttcccaga
tgtcttct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FNDC1:NM:032532:14/23
0 chr6 160901923 160902195 1001328 0 - pAlu6-160815263; RIP_Alu_chr6_160_01 NA NA SINE Alu Yb3a1 atatggaatagaaaaagggcctgtatatccaagacaacctaagcaaaaagaacaaagctggaggcatcatgctatctgacttcaaaatatactacaaggc
tacagtaacaaaaacagcatggtatggtactggtaccaaaacagatatatagaccaatagaacagaacagaggcctcagaaataacaccacacatctaca
actattggatctttgacaaactggacaaaaataagcaatggggaaaggattccctatttaataaatggtgttgggaaaactggctagccatatgcagaaa
actgaaactggatcccttccttacaccttatacacaaattaactcaagatagattaaagaattaaatgtaagacctaaaaccataaaAACCCTAGAAGAC
ACTTTGGGAGGCCGAGGTGGATGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACAGTGAAAGCCCATCTCTACTAAAAATACAAAAAATTA
GCTGGGTGTGGTCGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAGCTGAGGAGGTTGAGCTTGCAGCAAGCCAAGAT
TGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCAAAAAAACAAAAACAAAAACAAAAAATCAAACCCTAGAAGAaacataggcaatacc
attcaggacataggcatgggagaagacttcatgactaaaacagcaaaaccaatggcaacaaaagccaaaatttacaaatcagatctaattaaaataaaga
gcttctgcacagcaaaaaactctcatcagagtgaaaaagcaacctatggagaaaaattctgtggtctagccatctgacaaagggctaatgtttagaatgt
acaagcaacttaaacaaatgtacaagaaaaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctgacaggaagacctttatgtg
gctgacaaacatgaaaaaagctcatcatcactgttaattagagaaatgcaaatcgaaaccacaatgagatac UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LPA:NM:005577:29/40
0 chr6 170856771 170857070 1001329 0 + pAlu6-170690219; RIP_Alu_chr6_170_01 NA NA SINE Alu Sg cagtaaaatatttgaagagatgtattctgagccaaatatgagtgaccacggcccttgccatagccctcaggaggtcctgagaacatgtgtccaaggtggt
cggggtacagcttggttttatgcattttagaaaggcatgagacatcgatcaagtacatttaagaaatacactggtttggtccagaaaggtgggaccaaag
caggaggagaggggcgcttccaggctataggtaaatttcagtgagtttgtctaaagacctgggatccatagaaaggaaattttcaagttaagataaaaga
tggtggagaccaaggttcttttgaagtcttatagaggctgtcctcagagacaatagatggcaaatgtttcctattcagatctttaaaagGTGCTAGACTT
GGCCAGGCACGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCCAGGTGGGTGTGGATCACAAGGGCAGGAGTTTGAGACCATCCTGGCCAATGT
GGTGAAACCTCATTTCTACTAAAAATATAAAAATTAGCTGTGTGTGGTGGCGGGCGTCTGTAGTCCCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCT
TGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGTCACTGCACTCCAGCCTGGGCGACAGACTGAGACTCCGTCTCAAACAAAAAAAAAACAAA
GTGCTAGACTTtcagttaatctctttaggattgggagggcctggaagaaaaatatctagctatgttaatagagattctttacagatacaaattttccccc
acaaaggacagctttgcagggccatttcaagatatggacaaaaaagcctatgttttggggtaaaatattttgattttcttccttgtctcataatgttatg
acagagtcaggttggaaagtaagtcacaatatatagggttaaataaaatccatctgatgagaatttatggtttgtaggacatcactccccagacccttta
gatagggaatttgggtaagataaaaaaaaaaaaagtcagagcttagtcttcacttgcaagggtgcccctgtcttcctccactctccatccccaagctggg
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 16902826 16903151 1001330 0 + pAlu7-16646537; RIP_Alu_chr7_016_01 NA NA SINE Alu Ya4b tgagcatggaatgttttcccatttgtttgtttcctctgatttctttgagcagtggtttgtagttcttgaagaggtccttcacttcctttgttagctgtat
tcctaggtattttattctttttgtagcaattgtgcatgggagttcattcatgattttgctgtctgcttgcttgttgttgatgtatagaaatgctagtaat
ttttgcacatagattttatatcctgagacttcgcttaagttacttatcagcttaagaagcttttggggttttctagatatagggtcatgtcatctgcaaa
caaggataatttgacttccttaattcctatttgaacacactttatcttttctcttccctggccagaactttcaatactatgttgaatAGAAGTGATGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTGATGAGAGgagggcatccttgtcttatgtcgattttcaaggggaatgcttccagctattgcccattca
gtatgatattggctatgagcttgtcaataatggatcttattattttgatgtgtgttccttcaatacctagtttattgagagttttaaacataaagggatg
ctcaattttattgatggccttttctgcatctattgaaataatcatgtggtttttatctttagctctatttatgtgatgaattacgtttattgatttgtat
atgttgaactaaccttgcatcccagggatgaggtcaacttgatcatgatgtttaagctttttgatatgctgtggattcagtttaccagtatgctattgac
aatttttgcatcaatgttcatcaaggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 27749914 27750248 1001331 0 - pAlu7-27491577; RIP_Alu_chr7_027_02 NA NA SINE Alu Yb7 ggtaattttgttatgtgtgataatataattatggtgattctgtgtttttctagtctttatcatttaaagatactaaactaggccgggtgcggtggctcac
gcctgtaatcccagcactttgggaggccgaggcgggcggatcacgagttcaggagatcgagaccatcctggctaacacggtgaaaacccatctctactaa
aaatacaaaaaattagccgggcgaggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccctggggggcggagcc
tgcagtgagctgagatcacgccattgcactccagcctgggtgacagcgagactccgtctcaaaaataaaaaataaataaaaataaaaAATAAAGATACTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGATACTAaactaactgtaagtgaaatgtcttgatgtctaagatttgctttaaaaactcc
aggggaaaaaattaatgttagagggggtaataaaacaagattagtaaagtgtcggttcattttactgttcattctcctttgtgtatgtttgaaaatttct
gtaatagtaaaaccaaagcaaataaagaaatgaaacagattagtaacactccacatatgacccactgtagcagaaacactgcattttagaatatgaacgc
tttgtacccttagaagtgttgtaattcaggtaatggttgatagagttactgaaagtttttcacatcttcagctaaaaaacctttagaattatctccaaac
tttaatccgataggacacacaaacatatgaaagga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TAX1BP1:NM:006024:1/17
0 chr7 47861717 47862022 1001332 0 + pAlu7-47601872; RIP_Alu_chr7_047_02 NA NA SINE Alu Ya5 ccttagccattgcctgttgatgggtcttctgctggagcaggtatagaggttgaggcccacaactccaccaatcttggggaacaaagaccatctcagagca
aatgacagcaagcaatggacttaagtgagaaaagcagcaaaccaaagtatcgtggtgctgctattacacttacataaaattatatgcctgatattagaag
ctagcatacaaaaataaaccagttttactagtcaggatggcaggattggagtgaatattatgcttcatttgcatcattcttattaaaattaataatttct
aaagtattttgaagtattttttattttaaaagctaatgcaaaagaaatatctgctcattgtagataatcaggaaggtatAGAAAAGTATATGCAAGAGTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAAGTATATGCAAGAGTGaagaatagctattctatagtcccattgctcatagaaatcatatttcaggatgttgagtatcaaattttgctat
gtaatagagtacatatttggcagacaatttagttgtctatatgtatatctatatatttttttgacacagagtcttgctctgtcgcccaggctggagtgca
gtggtgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacgtgccacca
cactcggctaatttttgtatttttagtagagacgggtgtttcaccatgttggtcaggttggtctggaactcctgaccttaggtgatccactcgcctcggc
ctccca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PKD1L1:NM:138295:28/57
0 chr7 23330824 23330825 1001333 0 - pAlu7-86696097; RIP_Alu_chr7_131_01 NA NA SINE Alu Yb3a2 atactgtaaacacccctacataaataaactagaaaatctagaagaaatggataaattcctcaacacatacaccctcccaagactaaaccaggaagaagtt
gaatctctgaatagaccaataacgggctctgaaattaatagcttaccaaccaaaaaaagtccaggaccagacagaatcacagccgaattctaccagaggt
acaaggaggaactggtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgat
accaaagcctggcagagtcacaacaaaaaaagagaattttagaccaatatccctgacgaacatcaatgcaaaaatcctcaataaAATACTGGCAAACCGT
GGGCGCGGTGGCTCACGCCTATAATCGCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAAGAGATCAAGACCATCCTGGCTAACATGGTGAA
ACCCTGTCTCTACTAAAAATACAAAAACTAGCCAGGCGTGGTGGTGGGGACCTGTAGTCTCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACC
CGGGAGGCGCAGCTTGCAGTGAGCCCAGATAGCGCCACTACAGTCCGGCCTGGGCGAAACAGCGCAACTCCGTCTCAAAAAATAAATAAATAAAATAAAA
TAAAATAAAATAAAATAAAATAAAATACTGGCAAACCGAatccagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcacccctgggatgc
aaggctggttcaacatacacaaatcaataaacgtaatacagcatataaacagaaccaaagaaaaaaaccacattattatctcaatagatgcagaaaaggc
ctttgacaaaattcaacagccattcatgctaaaaactctcaataaattaggtattgatgggaggtatctaaacataataagagctatttatgacaaaccc
atagccaatatcatactgaatgggaaaaactggaagcattccctttgaaaattggcacaagacaggatgccctctctcaccactcctattcaacatagtg
ttggaagttctggccagggcaat Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:IGF2BP3:NM:006547:10/15
0 chr7 132758231 132758544 1001334 0 + pAlu7-132510000; RIP_Alu_chr7_132_01 NA NA SINE Alu Yb10 tgcttaaattagatgggagccagtgaaattatagtcaaactgcatgaagctgattttagaaccacattttcttaaaatggaggttatgtaggttacatgt
tttactggctcatggagctcttcaaaatgacccagttcagaatgacattcaacttagagctgattgaaatgggcattggtggaaaatcccttggggattt
gtggagcaattaaaaataacctaggaatctaattctttttaataatagaaaaaaaatctgtagttagaattttagagaagtatgtgaaagttttatctta
ctacagaaattatgggaaatgcttactttttaaaaggagaaagggaaagaatctcatgttgaaaattgtcattaggtaaagtAATAGAATTAATGGAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAATAGAATTAATGGAGCAatccaaaatgagctaaataagtttctttgtgagaattcttctagagattaattctagaattcttctag
agacttcataatatatggtaaaactaatattgctgcttagatattctgtgtcgtcttttgtcctcactttaggtaagcaatatgtacgccatagcactct
ctatcttactttacatcactttgctcatttggtgattgtgtaggtgtgagtatgtgcatgtgtgtagacttttgtcagtttccttcctgctaaattttaa
gctcattgaaagtaagaaccatgtgattagcttattattattatgtaccctgtacctagtgctgttcttggacataatagtgagaggtgacaacgtgcta
gcagccctcggtcg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:EXOC4:NM:001037126:7/10
0 chr7 142570756 142570757 1001335 0 - pAlu7-144624675; RIP_Alu_chr7_142_01 NA NA SINE Alu Yg6 atcctaaatatatatgcatccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccaaacaataataatga
aagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggaaatccaggaattgaactcagctctgcaccaagtggacct
aatagacatctacagaactctccaccccagatcaacagaatatacattcttctcagcaccacacaacacctattccaaaattgaccacatagttggaagt
aaggcactcttcagcaaatgtgaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattAAGAAACTCACTC
AAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGACGGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCG
TGAATCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAATAAAATAAA
ATAAAAAAAAAAAGAAACTCAaaaactgctcaactacatggaaactgaacaacctgctgctgaatgactactgggtacatgacgaaatgaaggcagaaat
aaagattttcttcgaaaccaatgaaaacaaagacacaacataccagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaat
gtccacaagagaaagcaggaaagatctaaaattgacatcctaacatcacaattaaaagaactagagaagcaagaggaaacacattcaaaagctagcagaa
ggcaagaaataagtaagatcagagcagaactaaaggagatagagacacaaaacaacccttcaaaaaatcgatgaatccaagagctggttttttgaaaaga
tcaacaaa Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 154572866 154573177 1001336 0 + pAlu7-154256716; RIP_Alu_chr7_154_01 NA NA SINE Alu Yb7 aattcaattaaataagtatttattgagcccttactatgtgcacagaggtctctgtccaagcttcatttgcaaatagattcatttgacaaagatgagaagt
ggacatgcaaactactctaatgtaaagaaaaaggaaataaacttgtatttgaataaataaatggtgtcttcacaaatctgtggccttagtcaaaagctct
tcacattctcacccaatcagatcaatccattctgcctctccacttatcaatcttatttatctataaaggtccagtaaaaacgttactatatcctgtgaac
agtctagttttgaattcatagacataaaatcttagcacctgaaggatacgtagaggtctggcctcacccttagtgttactgctAAGAAAAGTGGGTGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAACCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAGTGGGTGCAAttgatggacacctccgggatggccagagacaaggccaggaggagcccaggcaccctcccttctgggtacca
ctcctctggggcttgagctctccgtggctttgttgtacgtttaccccttgaccccctgctgagattataagctctatatggcaggaattgcgacttggga
cttttgttccacctatgtggctttacatggagtaggacctcagtaaacatttttgcacagctttattgaagtataattggtgtatggtaaactgcacata
cctaaagtgcacctttgatgagttttgatgtatatttatgcacctatgacatcatccccacaattaagacaatgagcatctccatcagtaaacatttttt
gttcattgttgt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 77797589 77797896 1001337 0 + pAlu7-77557801; RIP_Alu_chr7_077_01 NA NA SINE Alu Ye5 tatgaagtctaaaatgatttaaagaagcaagaggtgtctttaaatgttcaatgcagaatcattttgtctccaggatccaaagggtgaacatcctaagagt
tcataagatcttttcatgtatccattacttctagaatattatagctttaatttattgggagatagtcttatggagattcataatggctaccatttccgag
agattccatgtgccatgacctaagtattttatatataataacacatctggtgagatgtttggttaaactagactaagaaaagctttaaataattctgtaa
ggacaacataatcatagaagactctatgatgattacagcaaatcttctgcctccatagtaatccatgtcagactagtgctgcatAGAAAGATTCCTTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAGATTCCTTCACttatttaatcaacaagttgaatattttccatatacctggttatgaactaagccttggggatttattaacgatcaag
tcagacacaggttttgatctcaatgaacttattatagtcaggttggggaggcaggggctggcaaataagaatttccaattcagctgagggaggatcagat
aaaaataagcatctttcataaaaagcagattgtttcctgatgaaccaaaggctcagttcagagagacagagtagtacgaactgaacgaatctgacattgt
ctataagagtgcatatggtgcgtatacacgtgcatgtgtgtacacacatacacacaccatagaacacacacacaccacagaatactatgcagccataaaa
aatgatga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MAGI2:NM:012301:9/22
0 chr7 82784414 82784716 1001338 0 + pAlu7-82544626; Yb8NBC5; RIP_Alu_chr7_082_02 AAGGTCTAAGCGCAGTGGAA TGTATGCAGGTTGCTTGCTC SINE Alu Yg6 ccaaacaagtgatacaataactatgagattattattcttcctttcaggaaaaaaaaaaagaagcaatggcacgtaaacaaacttctccaatatgttaatc
tgagaaggagaaatgagaatctgggttggggaacaagtttgtctaaattcaaagcccaaatcagttctactaataaatagtgggattgagcattctaata
aaggatactcccgtgttccatcctggagattaatgcaagataaggcaggagaataaagcagatagcaatcatatttcatgtttgctattgataaaagcta
ataggaaatcttataagtatgtggctgtagtatggatttcaagactggaccccaagaagagtgtgtcatcccgtctatctgctagAAGATCTGAACAACC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCTCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAGAAAAAAAAAAAAAAAAAA
AAAAAGATCTGAACAACCatggccatccctctgaaagaccagtacctgtttctgcaacatttggagagaaaagcagaacagaataaaaattttctgcagg
aaatcagatccttaggagaatgggagggaagctatcggtgctaaggtaagtgcaaccagctcttgatcccagttttaccaatcagttaaataacttctta
atcagagatttattgaccaggcttgacctccccagagtaaagctacagtaagacagtaaactcactgtatgcaggttgcttgctccaagtctatcgcttc
tgcaaaaatatcttccttctgatcagtctacagagcccccagggtttttttttaatgtgttttgtacagagttcttaattgcagattgttttattagaat
ccc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 503 167 NA intergenic
0 chr7 31037116 31037431 1001339 0 + pAlu7-30778761; RIP_Alu_chr7_030_01 NA NA SINE Alu Yb7 ctcagtgcaatgagaagccatttgaggaactgacccagaagcgactctagaacaatgattctcaatcgggtgttatcctcgcaactcccagggattttta
gcaatgtcaacagagggtgagggtaggagtggtactggcagctggtgggtagaggccagggacactgctaaacattctgcgacgcacagggcagacagct
ctccactcccaacaaagaattatctgaacccaaatgtcagtaataccgaggttgagaaactctgctctagatgttggtgtcccccgggtccttgctcttt
tagaataacccagggtcactgtactccagcctgtggctctttctatatatactctgggttcaaattttatcttcaccgcttgtccaaAATGTCAACGGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATGTCAACGGTGcagaggttgagaaactactgtacaggaagaagggaagcagcacaactacttagacctgtgctgaatgcagt
agccactggccacatgtggcttttgaatacctgaagtggtcgggcgtggtggctcatgtctgtaatcccagcactttgggaggccgaggtgggtggatta
tttgaggtcaggagtttgagaccagcctgaccaacatgacgaaaccccatctccactaaaaataaaaattagccgggcatggtagtgtgtgcctataatc
ccagctacttgggaggctgaggcaggagaactgcttgaacccgggaggtggaggttgcagtgatggtgccactgtaccccaggctgggtgacagagcaag
acttcatctcaaaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 136485007 136485291 1001340 0 - pAlu7-136236560; RIP_Alu_chr7_136_03 NA NA SINE Alu Yd3 tccaaggattgtctgatcctgtagaggtgtctgccttcattttattctgtttttaactaggctgtttcacaatgctgacaagaagttaacctgtagaaat
ccaatagcaatgcaaatgattcctgtccatagaaatccaaattatgtctggtggaatgcaattgattatcaatctgtggatattaaatatgaatcagttt
tattagtttttgcatccattgtaaatgtttcagcatttctaataagactgagtgtgtgatactttgagtgctttttgaaatagttacagcatctatgatt
tctcttattaattaatgagttaaataaaatcttccaaatcttccatgtgtttacatctgtatgtcatgtttatatgtctttttAAGAATTGTCCTTTGTC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTCTGGGAGGCCGAGGCGGGTGGATCACAAGGTCGGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAATTGTCCTTTG
TCatcctttttgtgaatgccactttaatttagttagaagaaatttgttcgttgcagcaccaaagggttctaactattgcatagagtacctttcttgcttg
ctttttttgtctgttttttttttttttaactaagacaatctacttgacaaaacaaaccatcatgagaaggaggttttgacactttaagcttagaataaat
tgaagtgtgtctataaaaacatgaaatattctttttgaaagtaccatataaatgctagtgcctattgctaatgaacagaattgaatggtattaagagaaa
agttattaagcttcagtgatactccttcatattgtgtgtaaccaccacaggtattgctttctttttttaagtcaatgattttgag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 4209473 4209800 1001341 0 + pAlu8-4372545; RIP_Alu_chr8_004_01 NA NA SINE Alu Ya5 tctctcttgtacttcataaatatatatacctactaaatgcccacaaaaatttaaaaaataagttattgtaaaaataagtagttaattaacattaaaaatg
ctttacatctcaaaggggcagaaaggattacaactttctttaagccaaggggaacattaaggtcctcttgataagactagggcccttaaaataaagagaa
atcttacctaagaaaacagctttcccctcttcagttcctgtttactgttatagcttccattattgccctagtccatacaagattcatttgtttttcatgt
tttttccaaagtaatctatttttagtaatacaatttcctctcttgctttctagaagactctacattgtcagttaaaacattttttaaaAAGATAATCAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGCGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATCAATataatacactgcctgttactaaaatcataaccaaatattgaacctaaatcaaagcacccg
acaaaaacgtgcaagggatttaatatgtttaaattttactcgaaaacatttatattctaatggaactcagatgatattttatgaaatatgttctctttca
attgtgaggacattttccatattcatcagttgtaatggcaagtttacaagaaaaagtttaaatactttaagtgtgtagacatatagtgaactaatataca
gcatatcatatttttattttgaatttggtagttttgctcacaataaatatttgcaccttgtctatatataaaaaaagagttttgttaatgcttaagtagt
ttggaatgtaattttactttcttaaaga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CSMD1:NM:033225:3/70
0 chr8 11971716 11972025 1001342 0 + pAlu8-11805240; RIP_Alu_chr8_011_01 NA NA SINE Alu Y cttcacagagaagcagcaggcttgaaaataatgcccagattcttaacaccaatgccagaagaaacagaatggacctcattcatgaaaaattggtctgcct
gttgactccctgtaatatattctcagaagccttgttttttcacctaacctggacctcacgcagtggtaaagctgctacttggtgtggggcggtattagaa
aacatttacagaaaaacattataaatactgtcgcctgaacactggggaaaacaatagactaaacaaaagtcttcagaggaagtcctgggaatgagatgct
ttggggaatgtgggctttgaaaagcttcaacatatttctgagaatttgcaaaactgtgtatgtcaaggctgtgtgcatgtttagtaaaAACCTGGGAAAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACCTGGGAAATttctaccttccctgcacaagcagaaagtgtaagccaaggcagagtcgtaatctgtctgtctgagtgttgaaagcaggg
cccaacacatacacaaagcccctctgcaagttccaaacacatatggaaatctttgtcaaattattagctgacctctaagctaatggaaaaaatattttaa
tcgacataggtgacaaaaaatagagaccaaaaagtttattcagaaaagatactgaacaaacaaataactacaatgaggagtacaacgtggggaggacgga
gaatcttatttctagagtggccacattatcatgtttaaaatgtctggtattcaaaaaaagtatgagacatgcaaaaagaaaaaacccaagaaagtatggc
acatggaaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 12573088 12573401 1001343 0 - pAlu8-12303806; RIP_Alu_chr8_012_01 NA NA SINE Alu Yb7 acttgttatctccacttggctgtctgtcttgcattgacctcatcttaccttgcctctcctgatttcctcttctgcctgggctcaccacgtcagattcaca
ccaccatccacccagcttccaaaacacctgggcctcctccttcattcctccctctttctcagtcaagttagtctactgtctcctctccatcctcactgcc
acagccttggtccagccaaccatcttgtctcacttggtgtattgcagcctcctacctggtctactcacctcccactctcctccagccagactgctcttgt
tctagcacaaagtggatcattactcccctgtctaaaaacatctactgtctccctttgtctacaggatagacacgacaaagagcctttAAGATTTGGCTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGATTTGGCTCCaacttacctctatgttagtcactttttataattatatgaacatctctcagctcctcaccctctcacgtctcga
tttttgcacatgctcttccctctgctgggaatgatcttccacacctctcctatcgacctggctagttcctaccattttctagtcttcaactgaggagtcc
tgtggtggagagggatttctcacaacctgatatagattgcacgcccacccacctccgggctttttcttttttctttcttttgttttttttgaaggagtct
tgctctgaccatgcaggctggagtgcagtggtgcgatcttggctcactgcaatctccaccacccgggttcaagcaattctcccacctcagccttctgagt
atctggaattacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 31690798 31691136 1001344 0 - pAlu8-31427348; RIP_Alu_chr8_031_01 NA NA SINE Alu Yb7 atactcatcaggattcaaaaggaaaaatggaggaaaaaaagtaaatgtgctttatccaccttaccattctaaaccctggctaattttatagcctaaaaat
ccacacttcattttaaactacatacatgaccaccaatacaaaaaaaatcttaataaaataaataaaattatcccaaaatgtcagttttcaaattacagta
caaacaaggcatcagaataaataaccttccacttgctgggtattacacaaaagcaacaaagaaaagaaaaaaatgaggaaaaaaataaactccttaatca
taaaagttagaacagatataatgttcacacttccaagcatacatagtctcccaaaggcaactgatattgtacagaaaaatcattatAAAGAAACAGAGAA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAGAGAAtagttggttcttcaagggcaaatttccaaagacactggcaaaaatat
tttctcaacatgtgtggcaccctgcaatgctaaaattgtatttttggtatactcaactatcctgtcaatagggcaaaggtctgatagaagcaaaaggaaa
taaattaaggagaaaatgaagtgaagagtgaggttaagtagcttaccattaacagttctcagaaaataccaacaaaaatacaccaccatggaaaagaagt
tacaataacagtagaatataccaatatgcaacacctcaccatgtgttaaaaattagaaggagtggccaggcgtggtggctcatacctgtaatcccagcac
tttgggaggccgaggccggcggatcacgaggtcaggaga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NRG1:NM:013962:1/5
0 chr8 47500484 47500805 1001345 0 - pAlu8-47071828; RIP_Alu_chr8_047_01 NA NA SINE Alu Yi6 aagcacactgaggcctacagtgaaaattcgaatatcccatgataaaaactacaaagaaagtatctgtgaaactgctttgtgaagtgtggatttacctcac
agagttaaaactttcttttaattcagaaggttggaaatactctttttgttgaatctgtgaagggacatttaaaagtgtaatgtggcctatagtgaaacac
caaatattccatggtcaaaacaagaaacaagctatttgtgaaactgctttgtgatgtgtggattctgctcacagagttacacctttcttttgagtcagga
ggttgaaaacactgttttcccagaatctacaaagggacatttaagagcaccctggggaatatagtgaaaaacaatatatcccacaataaAAGCTAGAAAG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTTCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGCTAGAAAGaagctgtctgtgataatgcttcagatgtgcagattcatctcacagagttaaacctttcttttaatta
accaaatgtgaaaacatgctctttgtagaatctgtgaagggatatttcaaagcccactgagggctatagtgaaaaactgaatatcctgtgataaaaactg
aaagaagctgtctgtgaaactacgttgttatatgtggattcagctcacaaagttaaatctttgtttttattcagcaggttggaaacactgtttttgtaga
atctgcaaagggacatttaaaagcagacattggcctacagtgaaacattgaatattccattataaaaactagaaagaagctatctgtgaaattgctttgt
gatatgttgattcagctcacag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 49081982 49082285 1001346 0 - pAlu8-48642507; RIP_Alu_chr8_049_01 NA NA SINE Alu Y aaaagatttttcacatcccttgtaggttgtattcctaggtatttttattctctttgtagcaattgtgaatgggagttcactcatgatttggctctctgtt
tgtctgttattagtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttgtcagcttaagaagatttgggg
ctgagactatggggttttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctcttttcctaattgaataccctttatttctttctc
ttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagagagggcatctttgtcttgtgccggCTTTCAAAGGGAATGCTTTT
GGCCGGGCATGGATCCCAGCACTTTGGGAGGCGGAGGCGGGCGGATCACGAGGTCAGAAGATCAAGACCATCTTGGCTAACACAGTGAAACCCTGTCTCT
ACTAAAAAAAAAAAAATACAAAAAATTAGCCAGGCATGGTGGCAGGCCCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCG
GGAGTTGGAGCTTGCAGTGAACCGAGATGGCGACACTGCACTCCACCCCAGCCTAGGGGACAGAGCGAGACTCCATCTCAAAATAAAAAAAAATAAAAAA
TAAAAAGAATCCTTCAttcgcccattcagtatgatattggctgtgggtttgtcgtaaatagctcttattattttgagatacattccatcaatgcctagtt
tattgagagtttttagcatgaagggctgttgaattttgtcgaagccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatg
tgatggattacatttattgatttgcatatgttgaagcagccttgcatcccagggatgaagccgacttgatcttggtggataagcttttttgatgtgctgc
tggattcggtttgccagtattttattgagtattttcgcatcaatgttcatcaggggtattgagcccacgtagccaaggcaatcgtaagcaaaagga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 89461335 89461631 1001347 0 - pAlu8-89060843; RIP_Alu_chr8_089_01 NA NA SINE Alu Ya5 gtaggaagaggaatgagagatacctttagaccaaaaagtcagtcagtgatggaaatctgaaaccaaaagaaggtgatttgggagagggaggcagacagga
atgggtaccggtaaggtgagaaataatgtcacctttcatagtgagcggtttttttctccaaagtaattaatgagaatcttaattttttgaatgaattctt
tacttatgtaaaattatatcgaaatgctatgctatttatcagcctagtgatggataacatggcaaaaaggatttaagggctcaggatcatgaaaatttaa
atatagttgtttgaatatatgcctgtcttaaggtcaataacaggaggatacttgctgatttttttcacacaagttctgctttatattattAAAAAAAATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATTGgacagtgacatttgacaattccataaaacatgcaacaatttagtggcatgtgaagtgctctaaaataagaatagacgcatagcaaaaacgtt
atattgcatgaaaaattatatatatgtaaactaaatataaattatattacattgtttcttggagttacttgaataattttcccattatttcttgagagga
atactgatacattaattaattaatgaatatgaaatataatccagtcttaataaatctagttacagtacaaatgcataataattctaataatcacctcttg
gtattaatatgactcctgtgcttacaggtcttctttggattgcacttttgaaacctgatgaagccccactttcctatggggtaatgaagtctaacatg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 92222046 92222356 1001348 0 - pAlu8-91821562; RIP_Alu_chr8_092_01 NA NA SINE Alu Ya4 atgaggtcatatggattagagtgggccacaatccaaggactggtatccttctaagaagagaaaacaaagacatgtcctttaagccccagtttgtgatatt
ttgctatagcagcctcaggaaactaataaaacaagcatcactgtttcctgcactaactgaacaaccgacagtgttgccataaattgtccagtgtccacta
aaggccatacttcagatatgttattctctgaaagacagatacaaataaaagacattttatttcagatcatccttgttctcaaaggcttgttcattcaaaa
tccaattctaattccagcaataaataaaaatgtcagaaaaagtgaacacacgataaagaaaaggtagaagaacacccaatgattaaaAATCACATATTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATCACATATTGAagaatattcatttaaggaaagtgcttaatatataatgttaaatgaaaatgacaaagcaagacacgtatttctttat
gcagtatacattgaatttttttaatgagaatataaaaatgagattcttgaagaaaacaataaagtgtagtctctggaaggtaaacttaaagacaccttac
attttactctttctatacttatttacttattttctacaatgaatgaattaccagaaaaatgctacttacaaaaggataaatgaagacaacatcttaaatc
ttaatacccattcattcaagaagcagaggacacttgcaaactaatacaataaataatttggtatgtctcagacaggaattaggtatcaaaaaattgtatg
tgagaaaactg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LRRC69:NM:001129890:5/8
0 chr8 98664583 98664907 1001349 0 - pAlu8-98264106; RIP_Alu_chr8_098_02 NA NA SINE Alu Yb7 cctgaatttctagattcatttattattttttgtcatgttcattttctcttcttggactaatagtcatcccacttttttttgttttttccttgcctaaatt
ctatgcattttaaaaaaatggatgaaccccagtctcacagttatgtagttgaaggaagtaggagtattttaatagtcttttaaagtaattgggggatatt
ctttgctattatgataaaaccaatggtagcttcttaaaagttagttgcaatataaaatctgaaaccacaataaacagagtaacaagctctgttacataaa
acccattggcctgtcttgtactttgaattagtcttttacctatgtgtgatttggtgacatcttgcactggttcatatgcatttaaaAATTTATTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTTATTATTTTTtttgtagaaaggggtcttgtcatgttgcccaggctggtcttgaacttttgggctcaagcaa
tcctcccattttggccttctaaagtgctcaaattatggacatgagccatgataagcatttttagagtcaatttaggcattagaaagccttctctgaattt
gctagaattgaaatgctgtctaatgcaactttttgccataacaaaatatcctatatctgtgttgttctatatggcagccattaggcacatgtgattttga
caacttcaaatgtggccagcatgactaaggagctgaatttttaattttaattaatttaaatagccacatgtggttaatggctagcataatggatagtgca
gctctagaatgaggtgggttctcct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 106739711 106740014 1001350 0 + pAlu8-106339227; RIP_Alu_chr8_106_03 NA NA SINE Alu Ye5 cccacagtggttcaaatctaaacaaaaaataatttattttgaaaatcactaagaggtaggagactcattcatgtttttttgtgtatcagccattattctt
ttcattgttgaccagtgcttccattgtatgactatgccatttttttatcccttttcctattggcgaatatttgggatattttcttcacatcaacagcaat
ggattcttcaaaagaggaaagcagtttttattgaaagagtctggaagcctctggtgagttatggcatcaaatcaggggacattttgactgaacgagttct
gccagaaaaggaaggacacaagtcaaaatcctttgcttttgtatttcagtgacctttgaatcttattgaccccagtcagtctttAGAAATCAAAGCAGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGAAATCAAAGCAGACtgcatcactagattttcctgtaccttcagtctatctgttatcttcttgactgtctaaccaaagtgatccaaagatgaatg
aatttaaagattttctactggtcttggtgtgtgaatatacatggacttcttcacttttcaggtctttatttctctttgtcttattaattgccttccacaa
agcaatagagctatcttaaaagtactttgaaatccctggatgaaaacagccaaagccctgaaaaatatcagcattattatatcagttaataggcaattga
agctatgaaaggaataaccagaaagacaaatgaatggccaagaggtaaaacaattatttaaaggagaaataatgggtaacagtaaccagggttctgagaa
cagg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZFPM2:NM:012082:5/8
0 chr8 118781985 118782300 1001351 0 - pAlu8-118381506; RIP_Alu_chr8_118_02 NA NA SINE Alu Ya5 ttgctgtgggcttgctaatgcaggagagctggactggacaataacatgcaaaggagtgatagggagatagggcttggccggtagagcaggtgccacctaa
aaggagaacacgatgaaactgaacatcttctcaggtatttattggcatttgatttattcttctttgaatcgtctagttgagtcacttgttcattttttct
attttattttttgagatttatgggtgctctttgtatattttgatgttttgaaatgtcacatgtgtctgtgtgtgtgtgtgtatgttgtatgtgtgtgtgt
gtgtgtgtgtgtgaaagaggcagagagagagataatgatactatatatctctatatgaattgtattagtttgctcaggctgccatAAGAAAGTTCCATAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAGTTCCATAGaatgggcattttattttttatttttttaagatggagtctcattctgctgcccaggctggactgcagtgg
caccatctcggcttactgcaaccttcgcctcctgggttcaagcgattctcccacctccacagtagctggcattagaggtgcctaccaccatgcttagcta
atttttgtgtttttagtagagacggggtttcaccatgttgttcaggctggtctggaacttgtgacctcaagtgatccacccattcggcttcccaaagtgc
tgggattataggcgtgagccactgcgaccagtctgagtgttttaaactcagaagtttatcttcttacggttctggaggctagaagtccaagatcagtgcg
tcagcaagtttggttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 121750867 121751172 1001352 0 - pAlu8-121350381; RIP_Alu_chr8_121_02 NA NA SINE Alu Yb7 catatttcgtttgtgtcctaaagcacataataggtgctcaacaaatgtctgacaatagactagaggaatgtatggataacaagaaagctagacctatact
ttctaggacatgatacatttttatgagttgaaaggaaccttagagaaaaatttatactaaagtcaaattgagaaggtattccaggctacaacagtgactt
agcatcaaaatgagacaatgaatgatgtcttgtcgttttctagcttcttgctactcaaagtgtattacagggacaccagcagcatcacatcacctgggga
tttgtaagaaatgctgagtttcagaccccactccaggcctgtggaatcagaatctgcattttaatatgattcatcccattacagtttAACAAGCATTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACAAGCATTTTCattttgaatagatcactgagctttcaccaaactaatctctcatcctttagttgaatgtcctttttttgttattttctagag
atgaaattcaatttcttagtgaatccacatgtgtgaggaatttactaaggaggggatggtgctagtgaaattaattaaattcactcagtgccttggaaat
aaagcttgaacaaaggatcagaaaaagttcctttagtgcagatgggataactgttttctcatttagaatagcgcccactctggctcagatccaggcaaaa
tgtcaactgctccaactcatgaaaggtcaatgaattgcctcaaacattttatgaaatgctcatctcaaagctggagcccccatggagatggttgatggtt
gtatgc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SNTB1:NM:021021:2/7
0 chr8 132237484 132237779 1001353 0 - pAlu8-131839072; RIP_Alu_chr8_132_02 NA NA SINE Alu Ya4b gcaggcaagaaaagagcttgtgcagggaaactcccgtttttaaaaccaccagatctcatgagactcattcactatcatgaagacagcacaggaaagacct
gcccccatgactcaatcacctcccactaggttcctcccatgacacatgggaattgtgggagtcacaatccaagatgaaaattgggtggggacacagccaa
aacatattagctagtgtgtcttggaaaagtggtaaaagactaggtctgcatgactttgaattatggatgtccttgttgtcaggtatttatattcattaac
aagcaggttagaaccatttacacaataaaaggcttccttccagaaagctcccttccatgaagctctgtccacattttgtctctAAAAGAAAAGAAGGGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCGCTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAAAGAAGGGAAGgaaaacacgactgttttttggtcaaaagaagttaaagccaaaagacggtcattgatttggttgggtatgatcagtgaagtctggga
tttcaggggtccttgcgtggctggaactggttaaagaacttctataatccctgagaggaggtggacaggagtctaggtatgaggatggtgggtttcacag
cagacaagcgagcaggctaagcaaagacattagttgtactccataaaaaaaatcctgagcaggagttaagagacctggatcatttcaggctctaccactt
tgtagttacagagtcttgggaagatcattttccctctccggacttcatctttttcttctttcaaagaagcaattatacaaaaagatctccaagttcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 138929744 138930055 1001354 0 + pAlu8-138544858; RIP_Alu_chr8_138_02 NA NA SINE Alu Ya4b gttcagggaactgagaattactttgtccctcacactctgctgagagctttacaggagctgacttaatacactttcctttaaatctcccaagataggcacc
acttaccttgttttacagatgaaaaactgagtccaaaaagctacgaattttgcctaaaattacataccaaaaaaaaaaatagaacaagcatttgcaatta
ggtccctttgacactaaaactcatgaactctccactgcttgatctttagaaaacaaacagatgtttgatttatggtaatatatttaatttaaatctctaa
aaatcactgtacttgtatttgctgtatattgagcatatgcttcctaaggtcatttctaccataagcagcacagactggcttgctcttaAAGAGAAGGATA
GGCCGGGCGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCAGGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAGAAGGATAttggggccgggcgtggtggctctggctcacgcctgtagtcccagcactttgggaggctgaggcgcgggggtcactt
gaggtcaggagttcgagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggtgggcatctgtaatcc
cagctacttgaggggctgaggcaggagaatcgcttgaatccaggaggtcgaggttgcggtgagccaagatcgcaccacagcactccagcctgtgcgaaag
agcaggactctgtcaaaaaaaaaaaggagagagggagagagagggccatcggggtgaggcaacatctctcgcagatcttcagctgtgactcttcaggaca
aatggccatggg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 144794758 144795077 1001355 0 - pAlu8-144498249; RIP_Alu_chr8_144_01 NA NA SINE Alu Ya5 ctgaagcaagttctccagatctagctaagatggttgactaaggtggctactctaaaaagattttcagtgtggataaaaccgctttctattggaagaagat
ggcatctaggactttcgcagctagagagaagtcaatgcctggcttcaaagattgaaaaggacaggctgactctcgttaggggcgaatgcagctggtgacg
tgaagccaatggtcatttcccattccaaaaattctaggacccttaagaatgatgctaaatccactctgcctgtgttggaaatggaataacaaagcctgga
tgacagtgcatctgtttacagcatggtttatggagtattttaagctcactaatgagacctactgctcagaaaaaaagattcctttcaaAACACTACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAGAAA
AAAAAAAAAAAAAAAAAAAAAACACTACTCACtgacaatgctcctggtcacccaagagctctgatggagatgaacagggagactgatgttcttcttttgc
caacacaacgtgcattctgcagcccctggctgggagtcactccaactttcaagtcttattaagaaatatgtttcacaaggctgtaggtgccataatgatt
cctctgatggatctgggcaaagtcagccgaaaaccttctggaaaggagtcatcattatagatgccacgaagaacattcatgatttatgggaggaggtcaa
aacatcaacatttggtattttggaaaaacctgattccagccctcatgaatctttgaggggtttgagacttcagtggaggaagcaactatagatgtggtga
aaatagcaagagagctagat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZNF623:NM:001082480:1/2
0 chr8 39884488 39884803 1001356 0 + pAlu8-39506177; RIP_Alu_chr8_039_01 NA NA SINE Alu Ya5 acaaaaaaaaagcaagagagagaaacagattttgtgtgcctcatgtcttgtcatgcttcttcagaaggtgttttgattatttgcaaaaccgagtctctta
tcaatcaaacagcaaaggtttttgctttttgaaatcttctaattatcactttggctaaatgaatgactattattttttcattggacctatgatcctattt
tgatcaagtatttgaaacctttaatgtatttgagaggcttctcacaattatatttcaaaatctaaaattaagtatttttgacctcaaactaactttgaga
tattccaaaaagctgctgaagcttccaaaagaaataataaacaggcttatttgatatgttcattatgtaaaaagattttcaaatAAGAAATAATATTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCAGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAATAATATTTAAccttttcaaaattatatttgtattgtcatgttattagtatttgctccaaaattatatgagattcctaa
aaattggatttgttttgttatatgttattagtcataattatgagtattatgttaaattgttgtaggtcataaaaggagaaaatgacctagttttcttgtt
aattccatctttaaccacggccatttttagtcttgctcacaattaatttttttatgctgatcctttttttctgaaagctctttgcaaatcctaaagtgtt
gtgtcttcaagaaagctcatggaaaggactgcaacaagtactcttggctgggcacagtggctcatgcctgtaatcccaacactttgggaggcagaggtgg
gtggatcacctgaggt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 57176937 57177233 1001357 0 - pAlu8-56737468; RIP_Alu_chr8_057_02 NA NA SINE Alu Sg1 taccattttccattatggccaaaatacaaaaatttgacaaatataattggtgaggcatggggaccatggggaaatgcctaggcactcttggatattgctg
gtggaagtacagactttagggaaaataatctgggaacatctattaaaattacaaaattgctggtgtgattccatcctgtgcagctgttctcttgagcagt
ggtcatttatctctgtcccccttctctgccacctaagtgcgtgctgccacccgatggaagatttgatggacatggacatgagcctcctgaggccctagaa
ctatcttttcggttgtgaactgaaggccaacaaagattatcactttaaggtggataatgatgaaaatgagcaccagttatctttaagaatGGTCAGTTTA
AGGCTGGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGCATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAAGATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGCAGAATCACTT
GAATTCGGGAGGTGGAGGTTGTGGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCGACAAAGCGAAACTCTGTCTAAAAAAAAAAAAAGAACGGT
CAGTTTAggggctggtgcaaaggatgaattgcacattgttgaagcagaggccatgaattacgaaggcagcccaattaaagtaacactggcaactttgaaa
atgtctgtacagccaacggtttcccttgggggatttgaaataacataaccagtggtcttacagttgaagtgtggttcagggccagtgcatattagtggac
agcacttagtagctgtggtagaagatgcagagtcagaagatgaagaggaggaggatgtgaaactcttaagtatatctggaaagcggtctgctactggagg
tggtagcaaggttccacagaaaaaagtaaaacttgctgctgatgaagatgatgatgatgatgatgataatgatgatgatgaagatgatgatgatttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 72713973 72714293 1001358 0 + pAlu8-72274503; RIP_Alu_chr8_072_03 NA NA SINE Alu Ya5 tctttcactcctccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatcataacaataaaaactaaatctggaattatgctcagttaatga
cagctacttctgttcatgtagttttagatgtactttattgaattacttgtgttgttttttgtaatggacatatatccttttatctgaaattatgttagtc
ctctttgagaattttgacagaagtagggtgagttggataatgcctaataaacgaattttcctcatttccattcagcaggacctgtaatctctgttagcag
tggagctgctcagcaaaggttaagcttgatagtgaacaacctctttatgtacaaaaccgtatttggtaggcctcattgctggtaataGTTTCACTATATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTGTTTCACTATATCttgatggatatttaagccacattgattttttggtatgggctgtttggaaggaatgtccgaagtaac
tatagatgcttagccttctttttcaaagtttctagcacctatgtcccacacacattaggaactgaatgtttattctactgaactgaaataatagagtttt
tcacatatttgagacttacctgttaaagagagactttgtttttttttgttttacatcagacagaagtataagaaccatgggggaatgttgttggaaggta
gatttgactcaatataaaaaaaaaatttagccattcagaaatcaaacaagttgcttcagaggtgaaatagtctccactgcaacatgttcaagagaatctg
ggggcttatttaaaaggtcat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 83167367 83167672 1001359 0 + pAlu8-82727897; RIP_Alu_chr8_083_01 NA NA SINE Alu Yb3a1 tttctcagctgtgaggaggtctaggcctcagcaattttggaaagtcactgctgtcaaagagtctatttgagattgtagagtaaggatagattctgttatt
tcttgcaaattgagaaaccctttgagagtttgtggtagtaggataatgaagtagataaacctgctattccagtttctgtagcagtagccactcgtaatcc
tataagtagggttattagttttatggccctgcactgatggacttgagctttgaggggcacagatatgctctgctttccaccaggttagaagttaggataa
tacatgttacactgttaacttttagcaaactttacttttgttgaaaactttgtaagtttgggatttcaattattctttgctattAATAAGACCCCATTCA
GGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGAACTTTCGGAGACCAAGGTGGGTGGATTGCAAGGTCAGGGGATCGAGACCATCCTGGCTAACACAG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCAGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGTATGGCGT
GAACTCCAGAGGCGGAGGTTGCAGTGATCCGAGATTGCGCTGCTGCACTCCAGCCTGGGCGATAGAGTGAGACTCTGTCTCAAAATAAATAAATAAATAA
ATAAAAAATAAGACCgtccatattaacttagaattggtatagatggcaccttcctgattctgtaagtactttaaggtttgactgagtgaaaacagcttgc
acgtttgagcagacctcactggacagcctcactggaccttttccagctcctgcagtagctcattcactatcctgcttcagagacttcgtcttaccatttt
ctttccctgagacatttctctctctactgtacctttttgctttactcaggtattcaaaggattggatgaggcccaccacaatagggagtgcaatttcctt
tactcaatctactgattcaaatgttcatttcatctaaatactctcccacaggcacacatcacataaacatatgtgatatgcatgtatatatacatatat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 108189411 108189713 1001360 0 + pAlu8-107788927; RIP_Alu_chr8_108_01 NA NA SINE Alu Yb7 aaaagaaccataattttatttggtaaatacaagctagggccaaaacttttatggaaaatgtaatgcttcagaaaacagcatacctgcaacttcacattat
gggagggtccctatgataaagagtagagactggctggaggagaaagcttccacaggaagatgacagtgacaactttcagatttgggaaagtaaaagacac
ctggaaaaaatggattggggacttcaagcaaataaaaaaaatcttcctttctttgcacatacttaagatttgaggaacaaagggcttcaggtcctatgct
agcataactagcatgcacttgacggggcatcagccaaatgcaggtggagccaatgaacaccagaaaaggactatgctgggtAAGAATGCATGAACATTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAGAATGCATGAACATTGGaaaagcacagaggaagtgggggaaagacgtctccagattctgctgtggtagtctgactcatgcgcatcagggttgtgc
agtgtcaggcaaattttttgccagttccatacatcaaccattgaaatgatgcaccaccgaaaccaccaattaaaaaaaaaaactatcaataaaatattgt
acaattttttcccaggagtaacagaaattgggaggaagggttgaggaggaatgaatctctatcatcttgttgtccatgggaatgctgacaggaaaacaaa
tcagggaggaatggcctgacaaggagcccctaaacccaaggtgtcccagggttactgtctccctttgcctttccccttcatgagcagatttctctcccac
ctt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 126405999 126406297 1001361 0 - pAlu8-126005510; RIP_Alu_chr8_126_02 NA NA SINE Alu Y gttacccaagctggagtgcagtggctattcacaggcactatcatagtgtactgcagccttgaactcccggactcaagtgatcctcctgcctcagcctcct
gagtaactgagactataataagcatttaagtaagtagcttcctgtccccatctttaatgaggcataattaatatataattaactatgcatataaagtata
taatttgataatgtacacatctgttcaatcattaccacaatcaagagagtgaatatttgttgattgttcacaaagttgccttgtgcccttagtaatccct
atcctctgcactttcaggcttctactccccactccaacacaactgatctgttttctgatgccttacatcaatttgcatcataAAGAATTTTATCAAAATG
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGTCTAACATGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCCAGACTCGTCTCAAAAAAAAAAAAAAAAAAAA
AGAATTTTATCAAAATGGgaatcacataggatatgctcttttttttttttttttttggtctggcaccttgctgcatgtatcaatagtcctcatttttttt
ttttttgctgagtagtattctgtggatatgacatacaatgtctattcatttatcagttacgggatattgggcttgtttccagtttgaactaatagaaata
aagctgctatgaacatttgtgtagtagaagtctttctgcgggcacatgcttccaatggtcttgaataaatatctcgaagtgggatgcctaggtcatatat
gtttaacttttaaagtggttgtatcagtttacatttccaccagcagtgtgaagagactcagattctgcctagacttgccaacacatggtatgatcagttt
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NSMCE2:NM:173685:5/8
0 chr9 4336672 4336969 1001362 0 + pAlu9-4336570; RIP_Alu_chr9_004_01 NA NA SINE Alu Ya4 tcctttctctcttgatgcagcctagctttcaacagcactttctccctggggatacaatacatacaaagcttcatttgacagtcaaagcagagcgatgact
ttggtgttctagccagtgactgccctgccctgaagcattaaaactcattgattaaaaggatgaagagccatatggcatcttgatttaggaagaataaaaa
atacattaaataatttctaaagtattatatccattattcataagtgtggccattactttacatccagagccacaaaatgtcaatcaactgatagaaaaag
agcagaattgccagtctcagttgcacctttatggccatccttggtcagcttctctagtaggactaacaagcagtggcaacaagatttAATAATGGATGGA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
TAATGGATGGAatttcaggcaatagctgtgtcttagtccattttgtattgctataaagaaatatctaaggctaggtaatttataaggaaaagaggtttat
ttgactcacggttctgcaggctatacaagaagcctggtgctgtcatctgcttggcttcaggtgagggcctcaggccacttccactcatggcagaaggtaa
agagaagcaggcctgtgcagagatcacatgacaagaaagagacagaggaagtgtcagactcttcttaacaaccagctctcatgggaactaatagagcaag
aactcactcactacccctcctcggggagggcattaatctactcatgagggatctgccctcatgacctaaacacctctcattaggctccacctccaaca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 10488752 10489050 1001363 0 + pAlu9-10488651; RIP_Alu_chr9_010_02 NA NA SINE Alu Ya5 agcaatatgaaacacagtatttttgtttgcataccaaaaaaattaactgttagctttattggcactaataattatcctatcatttgcttcatgtcaattg
gttataccacattaaaggaaggcttccttgcacctgggtcaaaacaggtcacatcaaatttctcttttatttcaaatatctcctcaaatctgtaaacaga
atgacaaagaaaacttacttttaagatatacgcatttttgtatgaaccaacattttcagtaatttgactataatagatatcttatagcctgagacacaaa
aaaaaggtaagaacaattggtgttgtatattataaatagcaattaaggtaaaattttcacaccaataaacttataagaaaaaaagacttAAAACCTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAACCTTCTTGgaatatctattccctcagcaaaagttggggcaactttatatctcagttaatgttacatttgttaccaaagaaaattcaacaagattcaa
gtatttaagctgaactgtctgcccagctaccactagatttatccttctgtacacataccaagcttgaggtttttaaaatgagaaggtcctcattgttcaa
ctcccacttatgtgtgagaacatgcagtgtttggttttctgttcttgtgttagtttgcccagaacttaatgtataataaaaaagagaaagtccttactaa
actcgatagattattattactagggataaacaaagaccatatattcaacctgccaccatcttttttgtatctgcccaaaacatcttaaaatctcttacca
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PTPRD:NM:130392:1/44
0 chr9 13645423 13645745 1001364 0 + pAlu9-13645322; RIP_Alu_chr9_013_02 NA NA SINE Alu Yg6 cagtaagtaaatatctcaactttgctggtaaccagaaaaaaaaagaaaagccactattaatatcacttttgtcttttatattggcaagaatagcaaaggt
tacaaaacacaaggaagtgaatactttgcactgttgatttgagtggaaatgtttaaaattttttcaaaagcaatttggcaatattaatacaaaattaaca
tgaaagcatcctttggtagcaaaccagagaaataactattcatgaatattttatatctgtatcattatattggtatctctatatctttttccctctctat
atgcactacagttttgtgatagtaaaacaatgtagttaattacctcaataagtgaagttatagaagaaattaaggtatacccataatataaAACACTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACACTTGGtaattctgggggggacaatttttttaactaagtatgccatagcaagattcccaagacatattgttcag
cgaaaataaaaaggtgtaattatttatttacaaattgaaattttaatacaaaaatatctgttcatgtataccaatatatagtaagggaaatagtagtaca
cattctgaattcctgacagaagatactataggaagggcagttggaattaaaagtgggagaatgattaaggagatttttctaattttacctcgttgactat
gtttggatgttttatcataaaattaaaaatgaattgatgagacttggacttctatccaagacggaatttcagcaaatggagttacattccagcctaaaac
aaacaaaaatggaaaaaatatct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 16379408 16379730 1001365 0 + pAlu9-16379307; RIP_Alu_chr9_016_02 NA NA SINE Alu Ya5 tgggctcctcacctctctcttgcaagattcctaatttttaggcactcttacttggtttgatatagctaaaactctgatacctttcattgtccttcatgat
tttaccaacctccttggttctaacaattggagtttaagagttactatagaaaatgttctgtattttaatgtacaatatgattgctggccatttatataca
aggtatagacttcaaaggaacagagtaggagtgatcaaatgactgaattatccaagtatttcttccacaatcccttttttggtgtggggtcattgtcttg
gtgcatgtagacatctgcgcgatagagcaaccaggggagccgcaacactcagcccagcctaagcctttgtgtacaggatcaggtcctAAGAGTGACAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAGTGACAGCCatctccaggtcatattcttccaaggaaaagtcagtggtaccatgaaggggctgggtaagcattt
ggaagctcacccagaagagggggcctcattggtccacgcctgtccttctgaaggcccacagttggacctggggccgccccctccgggatggcttcgtgtt
aattatgatgcaatcccctggccatgcagcctcagcaacaatttcgggagtcagggtccatgcgcaaggccattaacactaaacatgttttaatccataa
ttgtgtgagatttatttaatttaggggctttatttatagttcgattggaattgtaatgtattttcagccctccgcactgtgatctgtcaatttttatggc
gtcttttaattgtgttcttccag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 29614707 29615012 1001366 0 - pAlu9-29614605; RIP_Alu_chr9_029_01 NA NA SINE Alu Ya5 cccagactaaaagacactgtggttagtgattgcagacaggaaacaatccatcaactgagggagaatgcagcactaaggacactaggcaaggaatatgata
caaaagtactttcctactaggataaaataagcaaacataaaattcattctgagcacttccttccttaagcaatattattaagggctgccaaaagcaaagt
ctcactactcagaaaattactgagaaaaaatgaggtaaggaaatatgaaagaactgagactaatggataaaagttaaggataatctagaaaaaagtgaaa
gccaatcttcatcatatatatacacaatttatgtttatgtatttatagagaactaacaaacttgcactgagcaaccttttttaaaAATCTACCCAGGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAATCTACCCAGGCTTatggattcagccagatcacctcatcaagaactgattcctttctatgattttttttttgccgggaaaaatgtgagttttg
ttgtgtatataccattgttactttcaccgtgatatgcaagctttgactatagcatatcgttataccctatgtgtctgaccccaggagacttgggtgggga
agaggaagaaatattttaagcttgcagctaagccagaggaaatggatattagatttttcaattttgtgtgtttgagaatagttaataaaactaagaaatt
agatcagtctctttgggagcatttttttaaactatgaaatacaaagctatgggtatggataccgaaccaacatttctgaatcccacgaatttccaggttt
aaagtt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 41663269 41663573 1001367 0 - pAlu9-41588821; pAlu9-40699651; pAlu9-40496918; pAlu9-40700328; pAlu9-40497593; RIP_Alu_chr9_041_02 NA NA SINE Alu Ya5 gggattacaggcgtgagccaccgcgcccggccaaaacacagatcttatagcaacaagaggaaagaactatgggccaaattttcttagctatgcttgaagt
aaactttgacaactaatcactctttattttatttaagaattcccaaccaggagtaaaagtccaaacctgacttataaggcatataatttaaaaaataata
aagtgaaataacttaatacaaataacaaaatgttgaaggtaggcatgttaaatccacactatcagattgggttttaaagagaaggagaggagacttcaag
catttagaaatcaataggaaaaagattgttctatttttataccataatgcaaaggaggcagagtgattttaagaacattgaagttaaAAGCAATTAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGCAATTAACTTGGggtaaaataaaatagaggtaggtagataatcagatatatgtaaaaacaaacttcaaaaattattttaacatcataatttt
agataaattgaatcagtggcttattcttgaaggtatagtagcaaatgagatgactgttaagtaacaaacaactttttgtttgacatagttgaagttagta
ccatctgtgtgcaagagacaccgttcctatcacacagatagcatgggaaatacctgcctgcatgattcaattacctcacaccaggtccctcccacgacac
gtagaaattcaagatgagatttgagtgggtgtgagaaatctactcatccatccaaacccaaagaatggacttagaggcatgaagaaaagcgaaagtgaga
cttaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 78476842 78476843 1001368 0 - pAlu9-61393723; RIP_Alu_chr9_079_01 NA NA SINE Alu Ya5 gacagaaaccctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatttcatatccagtcaaactaagc
ttcataagtgaaggagaaataaaatactttacagacaaccaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcac
taaacatggaaaggaacaaccagtaccagccgctgcaagatcatgccaaaatgtaaagaccatcgagactaggaagaaactgcatcaagtaacgagcaaa
atcaccagctaacatcataatgacaggatcaaattcacacataacaatattaacattaaatgtaaatggactaaatgctccaattaaAAGACACAGACTG
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGACACAGACTGGgcaaattggataaagagtcaagacccatcagtgtactgtattcaggaaacccaactcacatgcagagacacacataggcttaaa
atgaaaggatggaggaagatctaccaagccaatggaaaacaaaaaaaggcaggggttgcaatcctagtctctgataaaacagactttaaaccaacaaaga
tcaaaagagacaaagaagaccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacc
cagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacattaataattggagactttaacaccccactgtcaacattagacaga
tca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PRUNE2:NM:015225:9/19
0 chr9 74859351 74859616 1001369 0 + pAlu9-69239549; RIP_Alu_chr9_072_01 NA NA SINE Alu Ya5a2 ctgatgtttcaggctgcaagctgtaagagagggaagtgattatcctgtgtacctaatggcagcttcacaatctctgtaaacagaaagatggtagaagact
atgcatatgctgtcccactgcaacacttactgtcacagagattgacacttccattctccacacctaggcattttgaaaccactataagaagaaatacagc
aagtgtatatttaataacatttattcttacttagtataatcctaagtattctattaataatatcctaagaactggtgattataatgaatattgagtaatg
tgcaaacaaactgagttaacatgggtgctcctaaagaaataccatttgtatggaggcacttgtttaagctgaacgagtatgtaacttAAGACTTGATATT
GGAGATCGAGACCATGCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTA
TTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAG
ACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACTTGATATTatgggaaaattcttcatattt
aattaatctaaagcataggtcacaaactcaagcacctattgagcaatgaaaaatacgaaaaataagtgaattgcacttggtgaagcactgtgaggagggg
aggtcatctgccgcacctaactcggctcagtaaaccgttggcaagcaggacaatgtcccaatgttgtcagcttttacaattataaaagagaacctggaaa
tgcatattttcatgtgaaatctgatttttaaatgttagcaatagtgaattatttttaaaagattatgagagcaaaccaaaatgtattggaggactgtgta
cagaactaatcctctaggtctgtggtctctggtacagacagaaaccagtttctccttctagagaga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 96332745 96333054 1001370 0 - pAlu9-90591952; RIP_Alu_chr9_094_01 NA NA SINE Alu Yb7 ttaaaattgcaggaagaaatgactaagtattccttcttttcttgaggctttaagtaggaatccatttccttgcattttacagtttgtaaagactgctcga
attctttatttcatgcccccacccacctttcattttcttttctttttttattaagtttaagtccgggtacatgtgcaagatgtgcaggtttgttacatag
ttgaacgtgtgccatgatggtttgctgcccctatcaacccatcacctaggtattaagcccagcatgcattagctatttttcctaatgctcttcccagacc
tactccatcacccaacaggccccagtgtgtgttgttctgctccctgtgtccatgtgttctcattatttagctcccactcataagcAAAAACATGGTGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAACATGGTGTTTGGggttttccgttcctgcattagtttgttgaggataatggcttccagctccatccatgtccctgcaaaggacatg
atctctttcctttttatggctgcatagtattccatggtgtatatgtaccacattttctttatccagtctatcattgaggggcactagagttgataccatg
tgtttgcaattgtgagtagcaatagctaatatttttaaataatatataaattattatagtcatactggaaacctgtaaaaatgatcagtgaacttgaaga
catagcaatgttgaactaaacaaaacaaatcacagagaaaagtataaaggttaaaaaataaaaagagctctagaatagtttgctgtaatatcaagcagct
taatatttagta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 111470034 111470336 1001371 0 - pAlu9-105887562; RIP_Alu_chr9_109_01 NA NA SINE Alu Ya5 agagacagacagactctatgtgccccagacaatggattttccttttatgtatcctgcactctgctttgcctttgcccagacacacaatctatacataatt
aatctcccaatacatatgattaagcttcagctgtgctctgactaaaagtctgagttatgctttgacaggcttctaacagagagcatgatattttccagtg
ggataaaacaagaatgtgttttgttcctttctctttgggatgagctaattgtaagccctcctgctagaaagaaacagcaaattaagttttcctctatatg
caaatgacagttttataaacagattagtagtgagtttccatcttttctctctagttgttggcagagggatatgtagctcaattactttAAAACCAAAGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAATCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAACCAAAGCCatcattttcaaaggtattcccaataattccatgcatattacctcatttgtttatattttacaactaacctatcctgagctatagg
cttctggttatatttaccttattgttgttgttgctatttgtgtgagacagggtctcactccaatgcccaggctggagtgcagtggcaacatcttggctca
ctgcaacctctgcctcccagtgtcaagtgattctctcacctcagcctcctgagtaactgggattacaggtgtgtgccaccatgcccagcttatttttgta
ttttttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatacacctgccttgacctcccaaagtgctggga
tta UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PALM2:NM:001037293:1/7
0 chr9 41001834 41002140 1001372 0 - pAlu9-40093744; RIP_Alu_chr9_040_02 NA NA SINE Alu Y aagtgtggttaatatatgggtattcgtgcattttatgacattgtgtattaaaagatacatatttacaatactacattatttaactctctaagtagatttc
tatgtagtataatactgccattatgttttgtctttgacattgcatattgtcaattttattcagtttatttagtgcatactttatgtaaggtactctcata
ttcaaaaattcttctaataaaataaatggacaaatcaagaatgtatcaaagaatatgagttctgtcttgatcattggtatagtttggatatttgtgccct
ccaaatctcatgttgaaatgtgatccgcaatgttggaagtggggcctggtgggaggtatttgcatcatagggatgggttcctcatGAAAAGCTTGGTGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAGGATCGAGACCGTCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAGATACAAAAAAATTAGCCAGGCGCTGTGGCGGGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGCTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAGAATAGCTTGGTGTCctccctgtggtaatgagtgggctctggttgtattagttcacaggaggtctgattggtaaaaagagtctggcacttcgt
tccctctctcgccacctgagaggccaactcccccttcaccatctgccatgattgtaagcttcctgaggcctcaccagaagcagatgctgatgccatgctt
tttgtacagtctgcagaactgtgagccaaaataaatctcttttccctataaaccactcagccttggccggccgcggtggctcacgcctgtaatcccagca
cttcgggaggccaagacgggtggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaaaaa
aattagc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 114976919 114977200 1001373 0 + pAlu9-109390659; RIP_Alu_chr9_113_01 NA NA SINE Alu Ya5a2 ttcccattacctgctctgcagctgcttggtctgtggacactcgagtctttttcaagagctgtcgaagtttgtccaattcctcctggtatgacttgcgaat
ttcatctatctcctcctcggcctgagaacgctcttgagctgacttctttttcctttctgagaggttcttaggaacaagagaaccatcatcagctctagct
tgttaacagagaataaagagggatgatggcggtggcagttaattaccttgtggaatccttactccatttctgaaaactccattttttagttgaattttcc
cctaaatatttaacattcttggctactgggtgaggaaaatggtgacaggagaaggaaaacaagaagagctgtatctacccctctattAAGAGCTAGGGAA
ATTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAG
CCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATC
CCGCCACTGCACTCCATCCTGGGCGACAGAGCGAGACTCCGCCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGCTAGGGAAcatcc
taactttaataaaggtacaggaaatcagacattctcataccctgatagtaagaaaacgaatggatatactctctttggatagtaatcctgtgaaaagcct
ttaaaaacatacgtatccagaaattccacaaattgtaattaaggattcaataagtcatagtcataaagagtgtgttacaaggatggtcactgtagtagta
tctatagtaatgacaaactgaaaacagccaagaggttagaaggaattggttaaaaataaataaataaaatggaaaaaatcctggaaaaaaatgcaattgc
agaccaagatttaccctcttaaaaggcactgggccaaaacagctttacctaatgagatttactgaagcctcaggagcagttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FKBP15:NM:015258:21/28
0 chrX 40390129 40390442 1001374 0 - pAluX-39349696; RIP_Alu_chrX_040_01 NA NA SINE Alu Yd8 atcagctcttttttggctataggatgccgtaaggatgacagagtaagccaagggaagttagggctaaaatagcaccttaagtgcccagttaaaggcactt
tgggtagctgggaatggggtaggcagccggatctgtcttcagatcttggcaatgtcacttactaagtagatcgagtaggaaatttttttgcccagtaagg
gacggagagggacagccagaagtggcttcctaacacaaattgactttagcagtcagtctacatgccagtagttatcagcaggcacagggtgggcactgga
aaggagcagtgcctgggaagcagatgatctgagtcctggatcagctgccgtggtgtgacactgggccagcttgtgctccccaatctcaaaAATGAAAGGA
CGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATGAAAGGAattggggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggaggatggcttgagct
caggagttcaagaccaccctggataacatggcaaaaccccgtctctacaaaaaaatacaaaaattagctgggtgtggtggtgcatgcctgtagtcccagc
tactcaggaggctgaggtgagaggatcactggagcctgggaagtcgaggctgcagtgagccgtgatcacaccactgcattccagcctgggtgacagagca
agaccctgtcttaaaaaattgaactgtatcaggggtccccagacttttgggtatcacgagccggtaaacccaccacacctacaccatcttccccattttt
ttccactgcagcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CXorf38:NM:144970:2/7
0 chrX 47935293 47935582 1001375 0 - pAluX-46876575; RIP_Alu_chrX_047_01 NA NA SINE Alu Sc aggaaggaccatctggtctctgatctgttactggggccacttgcatggcttaggaatcgctttgactgttggcccctccctactgtgagctccttgaggg
ccttgtctgcacctggggcatccgggaagtcccagtcccagcccaggggatccctcggaggcccctgaattagtgaccctacaagtgcagattcaactct
ggtttagagggtaaagggatctgggagttgggttgccagtgtggagaccgaattcaaagaaggatcatgaaaggtattaattgttattattactacattt
aaacagtgtttacaagctcagagaggccttcccttagcctattttacatgtattgttcactatttcataagtgaggaagctgaataaaAAGTAGCCTAAG
GACTGGGCGTGGTGGCTCACGACTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAAGCGATCGAGATCATCCTGCCCACCATGG
TGAAACCTCGTCTCTACTAAAAATACAAAACTTAGCGGGGCGTGGTAGTGCCTGCCTGTAGTCCCAGATACTCTGGAGGCTAAGGAAGGAGAATCGCTTA
AACATGGGAGTTGGATGTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGCAAAAGAACGAGACTCCATCCAAAAAAAAAAAAAAGTAGCTTA
AGagtgttggtcagtgatacatcccaatgcaaccagaattgttatgggtaccacctcactgaattccacattcaatgttggtgcctcggtaggctggtat
gccagatctggtactgctttctttgctgcctggattaatttcagcaaaccatttctttccctctcccttccctgtatacatctccccacaccatcttgtt
cagcagtgttttgtcccctctgtatgtctttacatttactctcccagcagctgtctacgagcttatatgggatcccttgtattttacggaaactcttccc
tttgtagaccttgtgaattcttagaatgctatgctccaaatcttctgtataccaaactctcaattacatggagatatttgctgtttgcaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SSX5:NM:021015:6/9
0 chrX 55696961 55697273 1001376 0 - pAluX-54285500; RIP_Alu_chrX_055_01 NA NA SINE Alu Sc aaagccatattgaatcataaatatgagagcatattcttacttctgattatacccaacaactaacaattttcagattattttctcatttctgcttttaaca
aatacataatgcatttctaataccagtttgtgtgaaatatcctgagcaccctaagcagattctagtaccagctctgacattattcgtgagattctggatg
aattccataaattctacacccatcttttgctgttattgaaaatagtaaatgcaaatcagatatttaaaatctgtttcaaagttgatttctgtatcctcat
gttctgttggatagaatacaaagatatgacttgtttttcataacaatcagtttcactccagttataatatctgagttgaaatttcatggttcctAAGAAA
ATGAGTGGGCAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGAGGGCAGATCAGAAGGTCAAGAGATCGAGACCATCCT
GGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGG
AGTATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAAATCGCACTATTGCACTACAGTCTGGCGACAGAGCAAGACTCTGTCAAAAAAAAAAAA
AAAAAAAAAAGGAAAGAAAgagaaaacgagtgggcaacttgcttgatgaaagtatcttttccacacatttttcaacttggcgactgttaatcagaagagc
ttctgaatttataggaagtattccatgtttatggaagaaattacctaaatgattttactctacactgctgaaccattccattagactatttacattgaaa
gatagttttcagttatttccaggagcccgttgaacaagcctcaatttcattcttaggaagcttatagtcttaaacgattatcttgttaaaatagttagca
aattacatgagaaaggaaaataataaaaaatgaaaataataaagagcaatagaataaatctaagggaaaagaggtacttactaaaagacagctatgaatc
attagtaaaagga UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 88367388 88367687 1001377 0 - pAluX-86516355; RIP_Alu_chrX_088_01 NA NA SINE Alu Ya5 ctctctttaatcctataaaaggcgaggaagctgcagaagaaaaagtttgaagctagcagagtttgattcttgagatttaaggaaagaagccgtctccgta
aggcaaaacaggaagggctgatgtgaaagctgcagcatattatccagaggatctagctaaaataattgatgaaggtggtgacactaaacaacagattttc
agtacagacaaaatagggttatattgatagaagatgctataaaggactttcatcgctagggaggagaagtcagtgtctggcttcaaatcttcaaaaggca
ggctgaatctcttgttatggcctaatgcagctagtgactttaagttgaagctgaatctaatttgccattctggaaatccttgggtctttAAGAATTATGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGAATTATGCtaaatctactaagcctgtgctctatacatggaacaatgaagcctgggtgaaagcccacctatttacagaatcgtgtattaaatatttta
aacccaattttatgatctatggctcagaaataagatttctttcaaaatattactacttattaactatgcacctggtcacccaagttctatgatggacgtg
tccatggagattaatgttgcttttatgcctgcaaacacaacatctattctttagctcatggattaaggagtaatttaagctttcaaatcttattatttaa
gagatatattttgtaaggctctagctgccatagatgttgattcctctgatggaccggggcaaagtacattgaaaaccttctgtaaagaattcacccttct
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 90810109 90810407 1001378 0 + pAluX-88959081; RIP_Alu_chrX_090_01 NA NA SINE Alu Ya5 gacaagaaaggttatattttgagcctaatattcaaatcagtcactcggcttttcacatatctcttgctaatgacgctgtttattttattagacaaattat
ataatgccataaaacaggggaccttctccaggtattttctcctatgggagactagctgataaagtatggtataaccataacattgtggtttcttccaaga
taaggatttccacagtgtttttcacataaagagtcctagagctaagtttcacttaataaaataagaggcaacttaaaatgatggttaaaaaaaagatact
cattacaacatgatgtagtgatgtagtggtggaaaataaatagaatgcaaagaaatgaaaaatagaaacttatatataagcttcttaAAGTGTTGGGACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGCGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGTGTTGGGACTtaggcaataccacacttgggctcagatatctgttgattgattaactgggtaatggcgtgttctcctggactttgtaaaaacattgtaa
atattgacatatatttgaaaatacattataagctatattaaattttagaatatgtaaggggcagcagtagtatctgaagtcaatatctttcactttttat
tttttttttctgaaggttcatcctatagttaatgctttggtaagtaaagaggatagggtactgggtcctgcaacttagctctgagttctcagctaaggta
agtagttagtgcttcatgcaaacagtggtatagaataacttcactccagttacttattagggaggatcgtcttaaactctgcctctcaacattataaat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 91616539 91616846 1001379 0 + pAluX-89765511; RIP_Alu_chrX_091_01 NA NA SINE Alu Ya4b ttgttatttgttttctgttcattttgtggccttctcttccttctttccttccttttttcttcttttagttaagatgattttctctggtgatacaatttag
ttttttttttaaattttttgtcagtcagttatctgttttttgatttaaggttaccatgaaacttgcaaatactatcttataacccattattttaagctaa
taataatttaacactgtataaacaaacaaacataaaaatgtagagaaaactcataaacactctacattttattaccctactttttaatcttttgttgttt
ttattgatatattgttatactgtctaggtcttgaaaagttgtagttattattttttattggttcctgttttaatatttctacttatgatAAGAATAGTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAGACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAATAGTTTacacaccaaagttacagtgttataatattctgtattttttgtgtatttactattaccagtcagttttgtacctttgtatga
attcttgttgctcattaacattctattctttttaattgaggcactctctttagtatttcctgaaggacaggtctggtgttgttaaaatccttcagctttt
gttttttggctgaagtctttatttctccttcatgtttagaggatattttcaccagatatactattatagagtgaaagtattttttctccagcacttcttt
aaatatgtcatgccactctctcatgccctgtaaagtttccactgaaatgtgctgccagatgtattggtgctccattgtatgttatttgtttgttttctct
tgctgctc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PCDH11X:NM:032969:5/6
0 chrX 134985664 134985979 1001380 0 + pAluX-133102677; RIP_Alu_chrX_134_01 NA NA SINE Alu Ya5 tctttgcctggaaactaagatcagatcctcagtgggctgcgcaggggaagtcattccagagaattttatgttcaatcaacgtgtaacacctaacacgctc
ctacttgacacaggcacactctttcctaaatgcattccattccctcaactttccaaagttcccataaggagtcctactatgtgctaggaatccagcacat
gcatgataaaactccatcattcttttttcatcattttcaactggctactattaagtgcaccatatgggccctgagaatgaagcattgaaaaaggcaaatt
catggagtttacaatctagtggaagacacagataaggaaaacaataaataaacgtgccatttttctgacagcaatgagtgcattcAAGAAAATAAAACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAAATAAAACAGGGggtaataggataagtagtgatagggcaggggagtgacagagtgtgagaagggctcctttaaccagga
tggcagagaagacctctctgtagggaagacgtttgcattcttttttcttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcagt
gccgtgatctccgctcactacaatctttgtctcctgggttcaagcaattctcctgcctcccaaatagctgggattacaggcacccaccaccatgtctggc
taatttttgtatttttagtagagatggggtttcactatgttggccaggctggtcttgaactcctgacctcgtgttccctctcctcagcctcgcaaagtgc
tgagactacaggtgtgag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 138212577 138212886 1001381 0 + pAluX-136329590; RIP_Alu_chrX_138_02 NA NA SINE Alu Ye5 aatggaagcagaggtttgagtgatgcaacaagaaatgtgggaggcctctagaagccagaataaccaaggaatggattctaccctagagcctccagaagga
acacagccctgtgaacaccttgattttagcccagtaagacccaatttggatgtctgacattcataattataacataataaatttctgttgttttaaacca
caaagattgtggttatttgttacagcaaaaataggaattcagtaatatatatacaacacatatgatatttaaaggtctttctaatcaaaaccaggcctcc
tttaacctacaggtagagagttttcccagagcagtgcctctccataactcttcctagggcccgtctaatcctgacactgcaggtAGAATTCTAGGTGCAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATTCTAGGTGCAAGgctacccaaaggctgccattttgagatgattctgcccccaccagtttctccaggccagaagctgattgtctgt
tgttttaggtgcagctcaaaacctccagttttgccttctgtaagagcactgacccaactctgcaaaccattgctagttagtaacaatcagaaaaggatat
gtgaatgcttattcttctccatgctattttctaacctggctgtattaacagctaatcagaaattaacgctatgagtaggcactcttctgacttaagaggg
agcaagtcagcgaaatatttaagtgaccatttcattgcccgcctccattccaacagggttaatgatcatgaggcctggaacttagtcgtcatcatttccc
attgggatttt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 144243695 144244005 1001382 0 + pAluX-142293100; RIP_Alu_chrX_144_01 NA NA SINE Alu Sq gcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaattcaagaa
acaacataagctggtgaacttgcagagaaaaaagaatatgcttttacattgttggtgggagtgtaaattagttcaaccatgtggaagacattgtggtgat
tcctcaaagacttagaggcagaaatatcatttgacccagcaatcccattactggatacatccccaaaagaatataaatcatcccattataaaaatacatg
cacgtgtatgttcattgcagcactattcacaatagaaaagacatagaatcaacccaaatgcccatcagtgatagactggataAAGAAAATATGGTACATA
GGTCCGGGCACGGTGGCTCATGCCCGTAATCCCAGCAATTTGGTAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGCTCAAGACCAGCCTGGCCAACA
TGCCAAAATTCTGTCTTTACTAAAAATACAAAAAATTAGCGGGGCATGGTGGGGGATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATCA
CTTGAACCCGGGAGGTGGAGGTTGCAGTAAGCCGAGATTGTGCCACTGCACTCCAGCCTTGGCAACAAGAGCGAAACTCTGCCTCAAAAAAAAAAAAAAA
AGAAAGAAAGAAAGAAAATGTGGTACATAtactccatggaatactgtgcagccataaaagggaatgagataatgacctttgcagggacatggatggagct
ggaagccattatcctcagcaaactaaggcaggaacagaaaaccaaacactgcactttgtcacttataagtgggacctgaatgacaagaacacatggacac
atggggaggaacaacacacattggggcctgtcagaatgggttgagggagggaaagcaccaggaataatagctaatgaatgtgggcttagtttctgggtga
tgggttgatctgtgaagcaaaccaccatggcacacctttacgtatgtaacaaacctgcacatcctgcacatgtaccccagaactaaaaataaaagttgaa
gaaaaataaaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 149301807 149302130 1001383 0 - pAluX-147322023; RIP_Alu_chrX_149_01 NA NA SINE Alu Y aaaactgtgttaagagaacacataccatttacaactgctgcatagaaaatgcaatacttagatatttaatataatataatgtgtataggatctgcatcca
gaaagttacaaaatgcttttgtaagaaataaagactcctgtgcatgtatcctggaacttaaaataaaataaaatataaaaaatcaaagaggagcacaatg
agatttcctgtgacctattaaaatccataaaatttatcaaagaaatttacatacgaagtaaatcttgatagtagttccaatcacaataaattatacttgc
aactgacatttataagcaatttcttttctctctttaaaaaaactctatattttctttatgaaaatagtgattttttaaaactctactcTAAAATGGGACA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAGAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAATAAAATGGGACAaaatatttgtaatctgaagtgtttcaaattttgtactctattgctgcagtcttatactacatca
acaagtatgaatacatttataagaatatatttaaaatattttcacttattgtatttcccttgaaaatattgacatttttgaattttaataaaaagaattc
agaaaaaaagagttgaacatcaaatagaaataataataaacaccttttttgtgctcataaaagaataaagacctaaataaaagaggagacatactatgtt
tactgcctagaagactcaacatagtaaagatgtcaattcttgaattgacctgtaggtttaatgcagttctcatcaaaatctcagcaaagttttttgtaga
cgtagacaaggttattctaaaata UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 78958873 78959166 1001384 0 - pAluX-77113362; RIP_Alu_chrX_078_01 NA NA SINE Alu Ya5 gcactaaatatggaaaggaaggaccactaccagataatacaaaaatacactgcaacccacagatcagttttactatagagcaaccacacaagcaagccaa
cgtaataacctgctaaaagcacaatgaaaggatcaaatccacacatatcaatactaacattgaatgtaaatgggctaaacaccccaattaaaagacacag
atagacaaactggatttaaaaagtaagacccaatggtatgctgtcttcaagagacccatctcacaaataatgacacccacaggctcaaaataaagggatg
caggaaaatctactaagcaaatagaaaacagaaaataaggagggttgcagtcccaaattcagacaaaaccgacttcaaaccaacaaagataaaaaaaaaA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAaaaac
gaaagaagggtgttacataatggtaaaggtctcaattcaacaagacttaactattctaaatatgtatgcacccaacacaagagcaccaagatttataaac
caagtttttagatctctacaaagagacatagactccccaataatagtgggagatttcaacactccactgacagtattagacagatcatcaaggcagaaaa
ttaacaaagatattcaggacctaaactcaacattgaaccaaatggatctgatagatctttacagaactctctacccaaaaaacaacagaatatacattct
tctcattgctccatgacacatactcaaaaattgaccacataattgaacataaaacaatctaaaagaacacaaatcataccaaacacactctcag UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 92027262 92027557 1001385 0 + pAluX-90176234; RIP_Alu_chrX_091_02 NA NA SINE Alu Yg6 tcggcctcccaaagtgctgggattataggcatgagccaccgcgcttggccataattgagaagtttgaaccagaaaaataaaatgatcagacttgtattag
gttggtcaccattacttttaatggcaaaaaccgcgatcacttttacaccaacctagtattttatgaagctcactctgtttgcagtgtggaaagttgattt
gcagtggacaaaaagcagatatagtaaaactaatgagaaaattacaacagtagttcaggtaggagatgatagggaatttgtcttagatgttattaattga
aatgatacaaagtgggccaaatcgtagtttctttaaatccagggagttagtaatggaatataggagaaatacaaagagatacatGAAATATCAATGTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGATATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCTCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCAGTGAGTCGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAAA
TATCAATGTTCTtggattagggaggtagctgatttatgtgtattattttataaattaaaatagaacaatacatagaacaatggtgacaagttttcatgaa
gcaaagattgtgactaatcttacactaagcaactgacacccataagaaataagaaaggaaacacaaaaaactttactaaatagaaaatgtgaatttaatt
gacaaacatgtcctaatgtaacagtagtttcaatgcatgtaaatggattatagtgattaatgaagcaaagcaaatatacagttttgaaaaaaagagaaag
aataaccagatgttcttttaaaggacacagaataatcagaaatagaggagaagaaaaagaaatactaagcagtatgaatcaaagaaagctaggagt UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 119918306 119918603 1001386 0 - pAluX-117985277; RIP_Alu_chrX_119_02 NA NA SINE Alu Sg tttgaagtgaatttggcaggattcattaaacaccttccagtgtctgtcatttaccacctcaacactcagtgatgactgcatccatttcaactctgcacat
tcttttctaagtagctttaactacgttaactcagtgaaattcttatgtctcttgggaggttttcactactgcttagctatgaactatataacatttttat
gacactatctctactggcatgagccattactaggtggaaataagtgaactctgtgaccgccttgcagttcccatgctccagggtgcctccacatgggact
actatagtgttgctaataatcataaaattaaaagggcaggacttgtgtggacctaaagggtagccctggacactaaggcctcAAAGAAAAGGTGGAGCTC
GGCCGGGCACACTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTAGGTGGATCACAAGATCAGGAGATCGAGACCATCCTGGCCAACATGG
TGAAACCCTGTCTCTACTAAAAATACAAAAACTAGCCGGGCGTGGTGGCATGCACCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTGG
AACCCAGGAGGCGGGGATTGCAGTCAGCTGAGATCATGCCACTGTACTCCAGCCTGGGCAATAGAGCAAGGCTCCGTCTGAAAAAATAAAAATAAAAAAA
AGAAAAGGAAAAGCTCTGGATTCtggattctggattctgagttgtcctagagcttaagggccttgatcattcattggacaaagagcatgtcaatctgaag
ttttcagcaaatgagcttagggctcactgagagcccctcgttgacccttccggtcccgccccctgtctcctgccaaccagaatctttcccgccttatcta
agtcctctcaggccagacttggtgggaggttcctaggattcgctccctgcccttcccaccttagggtgtcctctgagacagactcttatttcctcaataa
agagaaagactcttattccctcagcggccagctcctcgcctcccctcggccgtagccacctcagtggtcaccgtcttcaccgtggtcgcctcagcccgct
cgcca UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA promoter:CT47A7:NM:001080140
0 chrY 9072975 9073273 1001387 0 + pAluY-8978451; RIP_Alu_chrY_009_01 NA NA SINE Alu Y caagagacatgccccagattaatactttgtatccctcaatccagtgaaattgacacacagtatgtcatatgttcaccccttttcaacttgaatctatcca
catctcctgagataatacgtactcttaaaataaagacaaaaatgaggttatagttacacctaacataatacaaaaatgaggtcatatttacacgtaacat
aatagaactatccttcatacaatcaggaacacaccaatccccaacccgaacactattacgtaaagttacgtatactcaaatgatgatatgaagtcaatat
atcttatgtcacataataaaaggaaagaaaaaatgaagatattttcttactacatgtgtatatatgcacaaacttttttagcaaAAGAAGGAGGAAATAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTGGC
GTGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AGAAGGAGGAAATACttaagacaattaaagtcgtcatttctgcagctggtcacgtgttttcaggcggtattgatgactggcttctactccccattgtgtg
ttttctttgccttcagtaaggtattcagcaggtcattttttttttcctggtttgtgacccaaaccttaattcctgaaggatctgaaccatttggagtcct
gccaggattgggctcttgtagtttcctattgaccttaatcgcaggtcatagtaatactaagacacatcctaatgtaccttctctattccattcatactct
tccttacctaaattgtggagcagtagactgatttcctccttgatagtttgggtcaatcacctcagtcaatactgtgccttccttcttagactgttgact UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 48039958 48039959 1001388 0 - pAlu10-48355753;1104685007159; RIP_Alu_chr10_048_01 NA;NA NA;NA SINE Alu Ya5 gggatgcgggccggctgcagtgagcggccaccttgccaagacacagagagatggagcgtgaagccaacacagtgtaaggcaggactgagagaggagaaag
catggctagaactttgcctgtactgtagctcaagccacgctaaagccaaaccgttgccaaccaagaaggtttcattagtcaggtgcaatccactttgctt
aggcctgtttggattctgcttttctgcaacctgtgacaaaaggaatccaaatgacaacattttaaaaattttaattaaaaaatttttgtcaaagagaagc
aagcctgtatatatcaaaccatgtatacctcaagtggcttcgaaagtaaacctaaggcagagactgaagacactttggtgtagattttcttaAATTTTAT
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG
CTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAATTTTATgccagtctttgctttatttaggtatagacacataagactaccataattcagatcgttagtctttgaataatcatgtggactgacttcc
ctgggaagtcggtgaagaattagaaagtacacaatttggaggaagaggggggaaaggagagataaataagaccttctgtggttcaagtgaggcagctcct
tcctgaggccccaacaatgcaaagctggtgatagcagagggaggggtccttctgcaggagggaacatccagggtctgtttcctcctgggaaaatcagagc
aagtttgagacttgttccctaagacccagagttagggggattttctcagatggaccagggtccatttgtatgaaaaggtaaccaggtccctgaaatcacc
acct Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr10 132035578 132035579 1001389 0 - pAlu10-132075177;1104685055881; RIP_Alu_chr10_132_02 NA;NA NA;NA SINE Alu Yb7 agataataaaagaataatataatacactttgtgttcaaactgtcaaaaatgtagacagaatagaaaaagttattaaaagacacaaattaccaaactgact
tgagaagaaatggaaaatctgcatagtcccattcttatatttgttaaagaaattcaacttataatgagaattaccccattaaaaaaaacctcagtacgag
atgccttcattgatgaattctatcacttaaaggcaaataagacaaatattgccaaaaatatttgagaaaaaagaatatcatttatcaaaccattttgtga
agctagcggaactctgatatcaaaaccaaagatattagaagaaagacaaaatattcagataactatcacctgtgatacatgatgcAAAATTCTTTAACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAATTCTTTAACAGaagattctacttctactcaaaatgaataaaagggtctagctttactcacctgcttgaatcaactaaaaaaaaaaaaaaa
acagacaaaacgtatgaaacaatggtatacaagacattgggtatcagacaacaaaaaacaataacccacagacaataagaaaatgaaacaagccctatga
ttgtcccgcttactgcttggagaaagttttcaggtctcagggaaaggtggttttcctgaattgaggagatgtagctgagagcctggggaaaccaaggcag
ctagaattcacagggcagagtatcatagaggaaagagcttcacaaagagagaactcaggagatcagcagagtctccctcaagtattcagttgaacactga
ccagtg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr10 116996333 116996334 1001390 0 - pAlu10-117137554; RIP_Alu_chr10_116_01 NA NA SINE Alu Yb7 gatgaatagtttgcaaatattttctccccttctggaggttgtcttttcattctgttgattgtccttttctttgcaaaagctttttattttatatgatccc
atttgtttacttttgcttttgttgcctgtgctgttgcggccttttgcagaaagtcttctccagacccatgtcttgaaggattattcctgttttctgttgt
tttattgttttgatccatttttagtttagaggggagggtctagtttcatactgctgcaaatgaatgtcaacttttcccagaactatttattaaagaggct
gctttttcagagcatttttttcattaatctttattcagtaatttttgtattcaatacagtctctcaaaatggatacagacttgttAAGAATGAGAGAGAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAATGAGAGAGATtcattatccattatccttttctttctcctggattttctatcttgaggtcactattttccaatcaacttattcgggaggggg
acaggtagagtgaaattcaaatacctctcagaaatatgattaaatctattgataaaaactatttttgaatgtctcactacactaacaagttctttccaac
taaaattccttttttttcctgttaaaccaggaaaaataaatatcacggtgtatagtgttaatatcaaaaggactctgaatgtagacttaactttaaattc
tgaatacaacatcttatagcctgtgtgagtttgggtttaaccatggtaaatcacagtgtcttcttctataaattaaatatactaatgtacactacacaga
tgta Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ATRNL1:NM:207303:10/29
0 chr10 96753975 96753976 1001391 0 - pAlu10-96895199; RIP_Alu_chr10_096_01 NA NA SINE Alu Yc1 tcaatgaatggataaagaaactctggtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgatggaatact
actcagccataaaaaggagtgaattaacagcatttgcagcaacctgatgagattggagactattattctaagtgaagtagctcaggaatggaaaaccaaa
cttcttatgttctcactgatatgtgggacctaagctgtgaggatgcaaaggcataagaatgatgaaatggactgtggggacttgggagaaagagtgggaa
gggggtgagggataaaagattacaaatatggtgcagtgtatattgctcaggtgatggatgcaccaaaatctcacaaatcaccactaaaGAACTTATTCAT
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCC
GTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG
AGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGA
CCTTATTCATgtaaccaaataccacttgtaccccaataactgatggaaaaaaataaaaataaagataatttgacatcttccattctaatttggatgccct
ttatatctttctcttgtctgattgctctagctatgacctacagtactatcttgaataacaatgatgacagtgggcatctttattgtgttccagatcttag
agaaaaggctttcagtttttccccattcaatatgatactagttgtgtgtctgttgtatatggattttatgttaaaatatgtgccttctatccccagtttt
ttgagggtttttttcatggagggatgttaaattgtatcaaatgctttttcagcatcaattgaaatgattatattgtttttaatgcttcattctgtgaa Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 89804958 89804959 1001392 0 + pAlu10-89946192; RIP_Alu_chr10_089_01 NA NA SINE Alu Ya5 agctctgggtgaaatggaaaaaagttacctaatgtcattaagcctcagtttctcatctgtaaaatggggaaataatagacaataataaaaaaaaaaaggg
cctattgcataggcttgtgtgtagacgggatgaaggaatgcataccaaacatgtagctcagatcctggctcacagtaagaagtcgggaaatgtaagctac
ggctctattccttgttgtgtgctaggcacttttgtgtatgagatacaatttcatttcccctgcatccaatagagtgggttatatgatccccattttatag
atgaggagattgaagcatggggaggttaagcaaatttgttcaaggtccacagccatagatgatctggtataagttattccatttAGAATGACTTGATACT
AGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGAATGACCTGATACTtttagaatctttaggaaagttcctgtaggcccataggaaaaggagtttatagttacacctagttcatgactatattaattt
atgtcagaagggaattagaatcatcatcaaaagttagagttggaagtaactttattgagtatttggaaaaatgaattgcaacctcatgtctcctgatgtg
tagtttaaaacataacaaagcaacaacaaacaacaacaacaacaacaatccaacatactaccaaatttatgccaaaatcccaaatggaaaacaggtaatg
tggttctatgctggctggaggacaggcaggacagtttgagccctttcccccacctgttctaaaagggtgtcacaaagccccaaggcacactttaaaaatc
aca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 122130594 122130595 1001393 0 - pAlu10-122271816;1104685660173; RIP_Alu_chr10_122_01 NA;NA NA;NA SINE Alu Ya8 tttgacttacacaagaaaaatgtatttcaaatgccagtgaacaaaaaaaatacatctatgtatgtcacctttgagttcatttgtcaagaggagaaaaggg
gaaaaatgatgtgtcatattactgaaaagtatgttgactgaattccatttttcataaatcagatattttatattaaaaaggagactgctttgaggagaaa
atatgagtttattatccagataatttaaattgaattaatagtatttgaaatatttaaattattagatccaatctgaggtagaatgatttgaattagttat
acaacatggtgcatcgtctttttagtatttttgtcactttctgttctagaattgttcttactctcagcaagaccaattgctgctatAAAATTTTGATGTT
CGGTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAA
AAAAAAAAAACAAAAAAAAAAAAAACCAAAACCAAAAAAAAAAAAAAAAAAAAAATTTTGATGTTttccgaactatctatccaaaaagatctagattgct
tttcccccacgtaaagcaagaaactaattttgctgactggaaactagaaattgccctgtaacgaattgcaactcgttagttgcaaatgggctttttcggt
ggcatagactcaacttcccaacttctgggcttgtttcagagccatttggccagaaagctagcaaggcaagccctcttcaccccacattcacccaggagca
ggatctcagcttcgtgtctggatagcttttgttgacttctccagacctgccttttcccttccaccactgtaagctgcatcagctggacgtccacttggtt
ccacctcaagaggcactgccaggaagcagagaaagggaggaaagtgaagct Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr10 67754672 67754673 1001394 0 - pAlu10-67977053; RIP_Alu_chr10_067_01 NA NA SINE Alu Ya5 acccagcacatttttaatgtttctttttctttcaccctttaatgtacagaaaacagtcaatactaaacaaaaaccgataagcatgtagctgagggactac
agtcattactgattatcgttaagtgtatttgcactcctgcctttcgtgtgcctattcttattttaatgtttgcttttggtcccaaaagactcatggggat
ttctgtggtgatttctaaaattcttcctctgtgtagctccctcctctctgggacagtgcctcacaaatccagctatcccactcttgcaaatctgacctct
ctccacagctgaggaagactgccaggctctgtttgggtttacttctctgtgatttggtccagaaaatatctccaatgttttgttgtAAAATTATGATGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATTATGATGTCtcagaagttgtaaaattatgacagggtatcttcatttggctgtgcttggttctaccttagttccttttgaatc
tccatatccagtttaagcatgatgataaactaattaaagcaaactgaaggccaaccggcatgcatcgggttaaatgatggcttctcagagcatcttgtca
tcatgaaactgaagagttccctgatcccccatgcaggacatggaacaggtttgtggctcacttgttcagttgccatcactgctcaaaccccttgcaggaa
ggggagcatgcagatgggcaggtgcagaggctggggccagtgctttgggctctggccctgtggtagtgtctaggggtgggtgcctgcaaccccagtgtta
caatgctgtctta Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CTNNA3:NM:001127384:12/18
0 chr10 68006773 68006774 1001395 0 - pAlu10-68229160;1104685136577; RIP_Alu_chr10_068_01 NA;NA NA;NA SINE Alu Yb7 tgcaaagaatttatgactaagttcccaaaagtaattgcaacaaaaacaaaaattgacaagaaggacctaattaacttaaagagcttttgcacaataaaag
aaactatcaatagaataaacagacaaccttccgaatgggagaaaatattagcaaactgtgcatctgacaaaggcctattatccagaatctgtaaggaact
taaatcagtaagcaaaaatatattaattgcatttaaaagtgggcaaaggacaagaagagacacttctcaaaaaaagacatacatgtggccaacaaatacg
tgaaaaaatgttcattatgactaatcactagagaaattaaatttcaaactatgagatactatctcacatcagtcagaatagctattattaaaAAGTTAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGTTAAGaaacaacagatgctgtttaagctgcagagaaaagggaacgcttatacactgctggtaggaatataagtta
gttcagccactgtggaaagcagtgtggagatttctcaaagaacttgaaacagaactatcatttggcccaacaattccactattgggtatacacccaaagg
aaaataaatcattctaccaaaaagatgcatgcactcatatgttcatcacaatgctattcacaatagcaaagacatggcatcaaccaagatgcccattgac
agtggaccagataaagaaattgtggtacatatagaccacggaatactgcacagccataaaaaagaatgaaatcatgttctttgcagcaacatgaaatgta
gctggaggtcattatcctaagc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:CTNNA3:NM:001127384:10/18
0 chr10 72275427 72275428 1001396 0 - pAlu10-72497815;1104685138101; RIP_Alu_chr10_072_01 NA;NA NA;NA SINE Alu Yg6 cttcttggttgtcaggttttgcaatgtttactgcgccataaatggctaagaagctatttgcagggtaaagagataaaaatggaatctggcttctaaattg
actttccttgaacaagagaagaaaagcagaaaaaacacattaaagagcccttttaaacaggtgttatcagggaagcaaagtggtggggaaatttcaagca
aatgagaaacagctaatgattatcttcaatgttactgttttcttatcccaaggaagttaactcccataccctactaagagtggggaaaaggtgcagggga
gtgttatagaacatccagcaccaaatccactacttgtgtttaggtactaacaacactcaccaagcacagactgcagaggaaaataactcataaGAAGGTA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGGAAGGTAacacacaaccaggtttctaggcgggaaaaaggtgggtgggcaggagaggggcttaatcctaagcaaaggtggaagattcag
aagcagatcactgagactgctcatcttctgcaccctgagaagtggcctcttcttccccatgttgatctggcactgagtcacttctaggaagctcaaagta
tacgatcccctgataccagttcaactccaagaggagagagatcctgtactacttgtgcagatatccccacagcctgatggcagtgcctggcacatagcaa
gcactcaaatggtcaccatgtaagtgctgttccaatttcacctaatctttactgaaaaggatagcacaaaatgaaagcaataaattcctgctctgggaac
tccaggtgacat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:SGPL1:NM:003901:3/15
0 chr10 72863554 72863555 1001397 0 - pAlu10-73085955;1104685145945; RIP_Alu_chr10_072_02 NA;NA NA;NA SINE Alu Ya1 tggatatctgggaggaatgccttccaggcagagggagcggcctgtgcaaaggccctgaggcaagagcatgcctagtgcgcttgaggagcatgaggaggcc
agcgtggctggaaggggtgcacagcgggaagagttgcaggagatgagggcagagagatctcagggtccatcatggacactttgtaggccactgattgtga
ggaaacacgtgatatgaataaccagttttcaagaagcaccctggctgctgtgatgaggacacactgtagggggcatgggtgggagtggctagactggtgt
ccaggctcctgcagggatgcaggcagggatgatgagctccaggcaggggagcggtgtgggatctggcagattctgggcatgtttCAAAGTAGAGCTGAGA
GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACAA
AAAACAAAAAACAAAGTAGAGCTGAGAGGgggtttcctgctggtggggatctggctgtgcaagaatgaattgagcccaagcacctgggaggatggcattg
ccattagctaggacaggagaggctgcaggtggagctggctgagggacaagatcggaagttcatttgagacatggcgagtctggcatggctgttgacaacc
aagtagcaacagtgggtcagcagctggacatgctcagccaaggtccaggatgggctggaagcagaagtgtgggagccaccagcagggaggtggtgcttac
cgccaccagaggggcaagatcagcagggctcccaaacccctgagctgaggcaactggacagagaatcagtccgtctttgaaaattgtccaaagagcctga
aaatgcatatacc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:CDH23:NM:022124:1/68
0 chr10 29145305 29145306 1001398 0 + pAlu10-29255537;1104685338171; RIP_Alu_chr10_029_02 NA;NA NA;NA SINE Alu Yc1 gcggggcccgccaagcccacgctcacccggaactccagctggctcgcaagcgcggcgcgcagccccggttcctgctcgcgcctctccctccacacctccc
ttgcaagctgagggagccggctctggccttggccagcccagaaaggggctcccatagtgcagcgctgggctgaagggctcctcaagtgccaccaaagtgg
gagcccaggcagaggaggcgccgagagctgtgaggactgccagcacgctgtcacctcgcaaaagtaaggaagatcgattatttttcacccattagctggg
caattcaaaaaaattctgttgcattccattttgggggagtatgcattggtaatagccttttgaagattgatttggcagtgtttattaaAAGTAAAAATAC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGTAAAAATACctattttctttgcatcatcacttctgtatttctgtccaagagaattctttgcacatgtacaaagttatacaggttgaaagaggca
tgggtaaagattttcaatgcagcattgttcataattgcaaaaaattttcaatttaaatgtccatcattatggaaacaaattgtgatatttccaatactac
atagcattatgcagcagtaagagagaataaggtaagtggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaagtgggcagatta
cttgaggtcaagagtttgagaacagcctggtcaacatggtgaaaccccatctctacaaaaacacaaaaaattagctggacatggtggtgtgtgcctgtaa
tcc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr10 3559026 3559027 1001399 0 + pAlu10-3669258;1104685348900; RIP_Alu_chr10_003_01 NA;NA NA;NA SINE Alu Yg6 ctgacatgaggcccttgggtctctgtgcctcagtgtcctcgagttccagttgagatgggtgcccatggctatggattgttgatatccttctggctctgaa
atttggatagtttcttctccaaagaactaagtgttactggaggctcttgaaagaaatctgcagcggcctgggatgttacacatccagccccagattaccc
caaggatgggcttgaacctcaccccatatccagcgtgaaatgacctgcaggcgtgtctcggggtctggatatcaaggcatccagtgactatggagcagga
acgaggccttcaagtcctgatggcgaatggccacttctgcacatcccctaaaaaccttatcttctaaagaccttcaacacattaaaAATTCTGTGAACTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAATTCTGTGAACTTtactatttctaaaaatatcctaccagctccaccactaaatataacgtctcttccaacgatgagtcaaatgcattttgcatcaatg
gctctgcatacttgagaaacggagttgtttgtggtgaagatatttttccatggtgctgctccaacagaggtcatttctaagaaatttctaatttccctgg
agaaaaatgaatgcttcaaagtcaaagaagaaggattttttactccagagcaacttctaaatctttttcaaaactggctttttgcttttgagatcaaact
ttgctctgtccagtttcaaatatcttcctttttttctgtctctactccagcttttttaactgatgcaaactttgagtatcagggtaaaccactaacctca
t Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr11 105549792 105549793 1001400 0 + pAlu11-106078653;1104685398698; RIP_Alu_chr11_105_02 NA;NA NA;NA SINE Alu Ya5 aaagaatgcaaacatttgtgtctcacctatgtgttatctggaagctccctaccagctctgagttttcctgcctttgctgtaagttgtccctccttcccag
acggaaccaatgtacttcttatgtatatggattgatatctcatgtctccctaaaatgtgcaaaaccaagctgtgccttcaccaccttggacacattgtca
ggacctcctgaggctatctcacgggcacatcctcaaccttggcaaaataaactttctaaattaactgagacctgtctcaaactttctaggttcagaggag
catgaggcagggaatccatacacttgtctcccatcccattcctctgtatgcagatgtttgaaatgcttcttccccaacgccataAAGAAATAGCACTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAAATAGCACGTGAacataaatttaatttcctcagcaaggccatttttatactttctgcagaaacggcacactcgtcagcagttttgccacaagagtac
actgaacaaaggagacagggtgatttataacctcacgtgtccaccctactgctgtgtccggtttccactggctggaacgggacctcacattctgtatttg
tcctgattggctagcaacttagaacgttttaaaagaggcaaaggcagaggagaactaaggaaggaggaagtaacttgtggaatgctgagaaaggtaaaaa
cgccttcaaataaggaagaggaacaggctatgacctaatgcctgcttggaccagtataggcatgccagggcaaatgtttaggctaaattgtgggagcta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr11 121782860 121782861 1001401 0 + pAlu11-122311562; RIP_Alu_chr11_121_01 NA NA SINE Alu Yd3a1 tcgtcatttctctcaccttcaatcaagcaggaaaatttgccctacactgtctattcttcttctctttccattcaaatctcctagtctgggatgacataat
gcctggtatttaggtgcatgctacagcctccgggctgtttttcctgtttccaacctttccctagattgatcctgcacgtatatgccacctttatcttctt
aaaatactgtttttttcctcaatatgcttccaaaacggaagaaaggaaacataagaaataagagaatatgttcatgactgagggacaggcaaatattttt
agacaaaagccaaaaagaaaaaaatgataaataaattgacctatattaaaatcaagaacttctgtccctcaaaagaagcattaaAAGAATGAAGGGCCGG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAAAGGCTGAGGCAGGAGAATGGCGTGAACCC
GGGAGGCGGAGCTTGCAGTGAGCCGAGACTTGCGCCACTGTACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAATGA
AGGGCCGGGgccgggcgcggtcgctcacacctgtaatcctagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcaagaccatcctggc
taacacggtgaaaccccgtctctactaaaaatacaaaaaattaactgggcgtggtggcgggtgcctgtggtcccagctactcgggaggctgaggcaggag
aatggcatgaacccgggaggcggagcttgcagtgagccgagatcgagccactgtactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaa
aaaaaaaaaagaatgaagggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaagcagatcacaaggtcgggag Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 38757652 38757653 1001402 0 + pAlu11-38840229; RIP_Alu_chr11_038_01 NA NA SINE Alu Ya5 ggttttgaataagatattccttgcctgtttaactttgtccaatgcaatttttcttcgaaacgcttacaagtgaatagagcacttatacacacaggatccg
aatggttattatttggcatggagataatagagaaaatgattcttcagaaagaaaaatgaagcatatgcaaaaataaatcagtgatgtaagtaataagtgg
ccatgagagaaagaggaagaggaagagtcgttggtcttcattactggcagtttccaaatattgactgcagaccctcaggagagcttcctgcaatataaat
ctataagatatccctgtattcctggtttttgtttagttgttttcaaatgattttctgttaattataaccaaaataattttgacttagAAAGTGGTTTATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGTGGTTTATTtaacatgggaacacgccaactcaaagtgttgactatgtgttaacattttttgactagcatgcaaaatcaaggacaggagttacg
ggaatatgaatggcattttgtcaaagattttctctaatatgcctgcttcattttgagaaaatatgtatttggtagaacatcttgtcatcacctctaattg
atacttctataatgtggtagtgatgggaagcataatgtgactggagagtcgacagtccttctgtaggagtatgtcactttgcttttccagtgaataacac
tgactcaaagcaaagataatttgaaaaccagaaaaaaggatgggtggataaaattggagatggggcagaaacattagaagctcatggcttctaaaaaaaa
aaa Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 15976571 15976572 1001403 0 + pAlu11-16059148;1104685628913; RIP_Alu_chr11_015_01 NA;NA NA;NA SINE Alu Ya4b cagcctgggcaatagagcaagactccatctcaaaaaaataaaataaaataaataaaataaaataaaataaaaaataaaaagcatacaaattataaaggaa
taaataatgtcatctgttcatatataattgtttacataaaaaatcctaagggatttacaaaatactagaactaataagtgaattaacagtattgcaatga
acaataaaaaataccaaaatcaatcatatttctttatactagcaacaaacaattaaaaaataatattcaaatatatatttataatagcatcagataataa
aatacttgggaataaatttaactgaaaaaagtattcaacacatctacactaaaaacaaaacaacatttgtaacttaaagaccTAAATAAATGGAGGAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA
ATAAATAAATAAATGGAGGAATAatttcctgaatcagaagactcaatattgttacaatgtgattgttcccaaatttacctacagattcaaccaaattcca
ataaaaattcctcaaagttttttcatataaggtgacaaactgactttaaaatttatatgaaaaataaagcagtaggacaaactaaaacaaacttgaagaa
aattagaggattcaaactaccttaatgaaaactaaggctgttaaagtggaaaacgatagttttttcaacaaataccgccagaacaagttgatagacacat
tggaaaaaaatcctgcatcttgtatcacacattatatacaacaattagagatgaatcatgacttaaatcaagaaagaaaaaactataacactcctctaaa
tatac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:SOX6:NM:033326:13/16
0 chr11 48889702 48889703 1001404 0 - pAlu11-48964719;1104685619728; RIP_Alu_chr11_048_01 NA;NA NA;NA SINE Alu Yb7 ggactgctttgaggacttcgttggaaacaggaatatcttcacataaaatatagacagaagcattctcagaaactactttgttatgtgtgcattcaactca
cagttttgaaccttccttttgatagagcagttttgaacctctcttcttgtagaatctgaaagtggatatttggactgctttgaggtcttcgttggaaacg
ggaatatcttcacatgaaactagacagaagcattctcagaaacttctttgcgatgtgtgcattcaactcacatagttgaacataccttttcatagaccgg
tttccaaacactctttttgtagaatctgcaggcggaaatttggactgctttgaggcctcctttgcgaacgggaatatcttcacatAAAATCTAGACTGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAATCTAGACTGAAGgcattctcggaaacttctttgttatgtgtgcattcaactcacagagttgaaccttccttttgatagagcagttttgaaatgctcc
ttttgtagaatctgcaagtggatatttggagcactttggggcttacggtagaaacgggaattcttcacataaaaactagacggaagcattctcagaaact
tctttgttatttgtgcattcatctcacggagttgaacctttctgttgatagagcagttttgatgcactgtttttgtacaatctgcaagtggatattttga
ctgctttgaggccttctttgaaaatgggaatttcttcctataaactctagacagaagcattctcaggaacttctttgttatgtgtgcattccactcacag
Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr11 60901789 60901790 1001405 0 - pAlu11-61396087;1104685019270; RIP_Alu_chr11_060_02 NA;NA NA;NA SINE Alu Yx tattcaacatcagctgggtgtcctacaattcgattcaattctgacactacatggagttagcatcagagcccacaggttaagtaaggctcagtcccacaag
aatgtccccacttcaaatgctaatcgcaagtctggctctctggtacttctgacccactggctatgaatcagagattcccacaaccctctccttgggttca
gtaatttgttaggatggctcatagaactcatgaaaacagtttacttactagattgctggtttattataaaaggaaagaactctagaatagccagatggaa
gacatgcacagggcaatgtatagaaaacagccaggaagcttccatgtcctccctggtgtagaccaaaagtaatattctaagtcccccaaAAGACTGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGACTGAATGaaccctcctctcggccaaggggattccaaactaaacctgaaagactagttcaggtcatgattggaaggggtgtttggacatgcttcatt
atactgtcctccctttggaattcaggcacatctgaccagtgtgaaaggaaaataaatcttggatcgccaagtgagtgtgaacccagaaaatttgagacag
gtctcagttaatttagaaagtgtattttgccaggttgagaacacgtgcctgtaacaacacagcctcaggaggtcctgacaatatgtgctcaaggtggtca
gagcacagtttggttttatacattttagggagacatgagacatcaatcagtatgtgtaagatgtacattggtttggtccagaaaggtgggactactctaa
Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr11 65260065 65260066 1001406 0 - pAlu11-65753620;1104685201932; RIP_Alu_chr11_065_01 NA;NA NA;NA SINE Alu Yc1 aaaagaagtcagaccatgacaggaaacagggggccaaacatgcctcactgtgccaccccttagaatttaggctaggcacaaaggcccttcaaaaattata
ataacaaagtacttccctttcccacataggaaagaaatagctcctctgttcaacctgaacacctagtcttacaaaaaactttttgttaaaaaggatcccc
agaggatcaattacaacccaaatggaagagcccctatcaggtattgttaagtaccttccctgctgttaaacttcagggaatcactagttgggtacacctg
tccaagattaaatctgtttcttatgaatccctgacggcataagaggaggacaccatgatttacacctgtgagctcctataagacttaAAGGTGTTGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGGTGTTGTTTCacaaacacaaagataaaaaacatgatgccatgggcatagatgcattaattttctcatcctccaaattataattttcctgttgacctc
ctacttaagtttatgtcttctagattccacataaagatgatgctggcacaaggtttcaacccatcccatcttatgacctgaaaaatgaaaatatcctgtt
ggaccccttagatcaggtatccagagattaccagaggctaggggcatgggagagtgggaaatgggaagatattgctcaaaaggtacaaagtttcagttag
acaggtatattagagttctctaaagggacagaactaataggatagatgtatatatgaaggggagtttattgaggagtaatgattcacatgatcacaaggt
Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr12 22015064 22015065 1001407 0 - pAlu12-22024050;1104685706556; RIP_Alu_chr12_022_02 NA;NA NA;NA SINE Alu Ya5 tggttagagcaggggtgtgccggggctgtaagtggtagagtttggttggaatataaggaatcagtgaagatgggcaagctttgtgaagactttaaatgac
agagtgacaacatcagtgagtcatgggaggtttgtgtgtgtggtaaagctgtaattggagatgtattctggaaagattaacatgatatgtatgtgtaaaa
tggttcaggtgggagaggccaattagaagattgatacaataattaatgattgatataataactaataactatcgatacaataacattactaatacaataa
ctaatctaaaaggagaaaagaggcagaaaggaagagatggaggccagtcattgctgagtgtatcgtaaatgattgaatatttgtatAAGAATGGAAGGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGGAAGGGAacagagagacagtgagtgatgaattcaagactaactccaagcaaggctttaagtcagaggcaccagtgcaatacatagg
aaagttggaggtggaattagtttaggagcagggaaagagaagaaatagactatgggtagtttaaatttttattatgcctccaaggcactctaatattatg
aattttatataagaaaaaagtttagattttaccaaagtcctaatgatatgtagaaatttttcttgaccaatatcaatattctaggtttttcctactgtcc
ttcaaaataatgtctaaccctcactgtatttgtgaagcagacatattctaattacctgcctatttatctccactccataatgttctctatgctccttgct
cctggaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr12 59990415 59990416 1001408 0 + pAlu12-61420894;1104685241273; RIP_Alu_chr12_059_01 NA;NA NA;NA SINE Alu Ya4 ctctattttatttcttaagagcaattcctagcatttcaattgttttctgcttaaaactgttttatatcacattaacacatgatctccattggaacaatca
atatcaatcaaatttaatttatgattcccataactgtagaatttctttttcccccacttttaacacatggctgaagttttaatttttttaaaatattttc
tctactttgtctatcagtatattacctaaaactatgttttttaaaagttcgttttttaagagagtctccaaaatatttcaaacctagatgaatatttttg
tgaaacaaaaggaaataaattaggaaaaggaagatggatttcaaaaggaaaacacaaaaagcatgctttccttctttttattttgattAAAAATTTTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATTT
TCTCaatgaaaaattttcattacgtgtatcttgaacaaaaaagtatttcaaatattatttttagaatatttatattcataacacattttttctcccctgc
atgtttataaggatctaatggaacagatgaggcaaagaccaacaaatataaaattaatgactagagggacttgaaaaatacaaaactacagctagatagg
aataagttctagtgttctatagaactgtagggtaactatagttaatatgtaatttcaaatagctagagggcggatattgaatgaccccaacacaaggaaa
tgataaatgtttgagatgatggataagctaactaccttgatctgatcactatacattataagtattgaagcattgctacgtactccacaaat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr12 84141870 84141871 1001409 0 + pAlu12-85550686; RIP_Alu_chr12_084_01 NA NA SINE Alu Ya4 tatatctcatgcagtttatagaattgggaaatacctataaattatgagaggaaagtagcctatagtttagaagatttggggcaaatatataaatctatgc
ctacagaaaatgaaaattgccccttttgaaaacagagtagaaactaaaatcaaccaatggtcaggagaaaatatttgcaccagggataacagaaaaagaa
ttataaatagtcaaaaacaaaaaaggaaactagaatccagtagataattgaagaaaacaaaaaagatattttacaatgtacaaactaaaattattaaata
attataatgttccatttcactagcaaagatgtataaattaagaccataattagacagtattgttatcaaattatcagcagttTAAAAATATATGCTCTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA
ATAAAAAAAAATAAAAATAAAAATATATGCTCTCTtactgttgaccaggactcagtaaaataagcaatctcataaagtatgtaattggtgagacctttta
aaaccatttgacaatatagattatatcaaattctttaaaatatttatactattagatattttattcttaattccatcttttaaaatggattaattattta
tgcagacagcaaacatatgaaaaaaagctcatcatcactggtcattaaagaaatgcaaatcaaaaccacagtgagataccatctcacaccagttagaatg
gccatcattgaaaaatcaggaaacaacatcctggagaggatgtggagaaataggaacacttttacactgttggtgggagtgtaaattagttcaaccattg
tggaagacagtgtggca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LRRIQ1:NM:001079910:24/27
0 chr12 86394955 86394956 1001410 0 - pAlu12-87803763;1104685533884; RIP_Alu_chr12_086_02 NA;NA NA;NA SINE Alu Yc1 aaaagagagcaatatgtgtgatataaaatgtgacagtagcctgagggtgatgctgatattgctcctttcccatccggaacatgaactaatgacacacagg
ggctagaagctcagtcattcgagacaggcacactaaatagaaatgacacaagcaaatagttgaacaaaaatttcttgtaaagaaacgcattatcatctcc
aaatacttacagaaaaccaatattatgaaacagacctaagcttaaaaataataaaaaataaaacaggagaaataatattgaagaaatgcagttaatcagg
taaagttaaggaaagcttgaaatagaattaatatattcagaaagatgagagtatatgctagacagaaaatgcaaagaaatttgtagaatatAAGAAACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAACAGtattgaacaaatgcacctataagaatgaagaaaaaaatgaaaggaaaaaatgcaaggaggggaaagaataaagggaa
gaaaggaaaaaaaaggaaggaaggaggaagaaggaaagaagcagagatggagggatggaggaagaaagaaagaaaggaaaaaagagtgtttagttacatg
aaactaaaatcttaggtgttctcaaatcagcagttgatgttggatggagggagaagagcaaatgataccttctgtgtcctagtttgtgggtttataggta
taacctgcttctagattctaacaaaaaacattaaatattttgttagaaatatttatttacacagcaaaggtatattaggtggctaatatttggcaaactc
cattttaggtacta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr12 96687534 96687535 1001411 0 - pAlu12-98096334;1104685531076; RIP_Alu_chr12_096_02 NA;NA NA;NA SINE Alu Yh9 attcaggtacaccccacaggctagcagtttagtaccagtttctagatgacaggagatgagtagacaaggagctgagcaagctatgggtgaagtccggaat
ccaataaaaatgggtaagttccaaggaaacaggaagttcacaattgcgcagatttcttctaatgctctcctcccagggcctaatgctatgggaatctctg
ctgtcgatgtcgggtacagtatgaaatggaagacatacagactctgcctttgtggtacttctgtacaagcaggaaagaaaaaattctaaggcactgtgat
ttaaaaaaaaaaacaaactacaggggctatggagaccaaacgggtagacctagacttggctgcagggttagaggaagtgtcttAAGAAAAGTATTGTTTA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGGT
GAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAAAAGTATTGTTTAaactgagattgaaagtaggattaatgctggttcaggaaaaaagggaacagacactccaggaagagaatgttctggcgctcc
ccatatggataggtaagagttgtggctgggagcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagat
cgagaccatcctggctaacacagtgaaaccccatctctaataaaaatagaaaaaattagccggaagtggtggtgggcgcctgtagtcccagctactcggg
aggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagcagagagagcaccactgcactccagcctgggcgaaagagtgagactctg
tc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr12 129990164 129990177 1001412 0 - pAlu12-131163186;1104685140167; RIP_Alu_chr12_129_01 NA;NA NA;NA SINE Alu Yc2 ctgaacaatagagaaaaattattaaaagaaaaacagtagaatatcagggacctctgggacaataaacacagcctaacatttatgtcttcgatattctggt
agaagaggagagagtgtggggctaagacaatctttttaagtaataataaccgtaaactttgcaagttcaataaaaaacataaacctacatactcaaaagc
tgagcaaatcccaaacaaaaatccatgcccagagacatcataatcaaactgcggaaaactaaaggcaaaggaaaagtagcaaaagtaggcagagaaaaag
agcacattacctataggcagacactatttaaaataactgaagatttctcatcagaaaccatggaggcaagaaaaaaaacatttttcaaaaaCTAAAATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAACACTAAAATAAaataactatcaacccagaagtctacatccagcaaaaatattcctcaggaagaccagacacggcggctcacacctgtaatcccagca
ctttgggaggccaaggcgggcagatcacaaggtccaggagattgagaccatcctggctaacatggtgaaaccccgtctctactgaaaatacaaaaaaatt
agccgggtgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtaaacctggaaggcggagcttgcagtgaggggaga
tcatgccactgcactccagcctgggcaacagaccaagactctgtctcaaaaaaaaaaaaaatatatatatatatatatattcttcaggaagatgataaaa
tgaaa UCSC;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 58294897 58294898 1001413 0 - pAlu13-58333517;1104685359979; RIP_Alu_chr13_058_01 NA;NA NA;NA SINE Alu Yg6 ccgctctttgcaataaattttactgctgctcattctttgggtccgcactgcctttatgagctataacaccgtgaaggttggcagcctcacttctaaagcc
agcgagaccacaaacccaccaggagagacaaacaactctggacgtgccactttatgaactgtaacagtcagtgcaaaggtctgcagcttcactcctgagg
ccagcgagaccaggaacccaccggaagggacaaacaactccagacgcctcaccttaaaagctgtaacacttacagtgaagctctgcagcttcactcaaac
ccagcgagaccacgaacccaccagaaggaagaaactcggaacacgtccgaacatcacaaggaacaaactccagataccatctttAAGAACTGTAACACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAACTGTAACACTCactgcaaggtccgcaccaattctggacacaatagtacacttcccaacagtattttaaatttgttttagtattgccaatttga
taggcaaataaatgtcgtaatttaaaatgagaaatggggaaaacagctaacctaaactattacggaaagggaaatagcaagtgctccataaatgagtgag
agaaggagggtgactgaggatcagagatatttagcaattctgggtaaatctcaaaagattcatgaagttttgcactgataagagctggttagccttccat
ttttattccatattggtccagggatagaataaatagaacctcaaaagtccaaatgggaaaaattatatcccaattttattaactttataatagtattacc
aa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 60685420 60685421 1001414 0 + pAlu13-60724055; RIP_Alu_chr13_060_01 NA NA SINE Alu Ya4b atagctgtgtctctgtcatgtgaggaaatcatgggaaggcggctgttggcaatgcagcaagagagccctcaccagaaccgaaccttgtggacaacctgag
cttgaacttccatccttcagaattatgagaaaatcaatttctgttgtttaagccagtctatgatatttttgttatggcaggttaaacttactaatacact
cctaggtttattaacatggatccaagttcactgtaacttaactttaatgctttgaaagcattgaaaataaacttattccttcaaaaactctattaaccac
caaaaacattaatatgcttcaaattcccatgaagtaaatgcattaaacttcaggaaaacatgaggcttattaagttagtgtgtaaAATTTAATTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCTCTCAGAAAAAAAAAAAAAAAAA
AAAAAATTTAATTATTTTTattatagagtataaaacatactgtataaattttttttaaaagatgataactttacagtcaaatggtaggttctgagaggag
tttaaatagtactttgtgtacttaggtaaatggtctcctctggaaaaaacgatatcagagttgaaagaaaaaagtacatatactacagaaaaaattctac
agactaaaccataaattattattttaaaaaattactactagaggcattaattttatactccttatattaactcagtctttatgtttgaaatgagtcacaa
tgcagtgatagaatgacttttacctgccattctatgccaattatttggagttgttagatgggataatggatgcttttgtctcttttgctctaataatagt
aatt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 66801472 66801473 1001415 0 - pAlu13-66840092;1104685500433; RIP_Alu_chr13_066_01 NA;NA NA;NA SINE Alu Ye5 actccacagacatgtctgaaaagaaaaatgggcaggttaaggtgaggcaggtcaaagtgaggtcgcctggagtgaaaaaagtgatacgcaagtgatgatt
gtatccctagacctctcgtcaaatcagccagtcagtgacatgttctgcatttggccatgtactgtggaatatccaaataaatataggacacaggctttct
gctcaaagagcttaaagttcaagtcacatgccaacatatacagcattaaagtatgaacaataataacttaagagaaaaataggatgtaattcaaatggaa
tggaccaacttactgtaaaactcctgaaatgtttgagggctttctgcagaagattgaagttgatctggttcataaaggatgttaAGAATACAGATAGATA
TCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGA
GGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAATACAGATAGATAaagaaaaggtgttagagaataccatggaaaaacaggccagaataagcaaagctgttacg
ttagcaatgagtatgccttgtctttagaagaaaggaggaatacggcctgatgaaatgtcatggaataatttgataaatgtttggctaagaaggagtagat
ggctcatggaaaatattgaaaaagtgcagatgtttggacttgatctgttagataataaggaaatactgaagaaaatacaatttcatgcagagctaataca
tattaatgtaattcccagctactgcctggccattgtgcaggatgttatctcgctaaaataatttcccctgctttatagttctgaaggaagaggaagtctc
ctggagttatattatctaggattac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 77549689 77549690 1001416 0 + pAlu13-77588325;1104685165797; RIP_Alu_chr13_077_02 NA;NA NA;NA SINE Alu Ya5 tcaagttttctaggaatagtgaaactagttaaaccaaatatgagagcccttttcaccaatgaggaatgagttcttttcatctactagtagtacttttcat
catttttcacctgctagaatggcaaaacaacaataataataatcatggcttggccattgtatagctaagtactctgttgataagaccataaattaattct
actttgtgataaatttgatagtatctagttaaatttaaaatgcaaaaagcatatgacctagtagttatatttcggctatctattctagagcaatacatgt
gatgttttcaagtaaaaggaagtatataaaagatgtttattgcagtcttggctttaaaaaaaatagagaaactttaattgccatAAAAATGGGAATTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGGGAATTGTTaaacaagttttgacatattaatgctgcagaatgcactgcagcacttaaaaagagtaagataatagacagccaaaataaaattgct
agatcctatgttatttgtattttaaatttaatcagacattgtcacagacagtgtcaaattcatcacaaagtagaaccaagttataatcttaccagtagag
tatttacttatgtcatttatttctagaaagttctactagatgaattgttagaactacattccaattagcaccatgacatagagtaatacttttctataaa
tatgcaaaagaaaatattcacaaatataaaataagtgtaaatgtgtaaaaagaaaaataaacactaaattacaccatatggcctgatatgcatgaatag Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 79670344 79670345 1001417 0 + pAlu13-79708980; RIP_Alu_chr13_079_02 NA NA SINE Alu Ya5 cttgaacccaggagatggaggttgcagtgagtcgagattgcaccactgcactccagcctgggtgacacagcgacactctgtcaaaaacaaaaacaaaaac
aaaaaatttataaagatgacatcttgccatcttgcccaggctggtctcaaagtcctgggctcaagcactcctcctgccttggcttcccaaagtgttggaa
ttacaggcatgagccacggtgccccactagcctgactttaatattttcatgaggcaatgcttcaatgctaacctccaatataatttcatgcatattttca
ggaaatacatgatgttttgctataaataagtcattggtgttatctgtttctactttgcatatagggatgaagagccagccattgttAGAAAGGCAATGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
AAAGGCAATGTGactcagaggcaagacaaagataagatccttcgtctctggtattcagagcaggtcctcaatttatggaaatagtgacattgttccattt
tccccgcatcccagtgaaagtattcaagtgactgtttacacacaactggtgatgttcacagttgtagcacttttgccctcaatgtgttatatctatagga
attcataagttgaaagttagtaagtggagatgcttttgtattgaaatccgatttctattaaccaagcgaagaggaaactgaaggtctatttattctagtt
ttagacacacttctaaaaagtttggctatctattgtgctcacaacactaaaaattaacaaataagtagaaatagtgccttagagggaaatagtgcctt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 21086495 21086496 1001418 0 + pAlu13-21118494;1104685715564; RIP_Alu_chr13_021_03 NA;NA NA;NA SINE Alu Ya4b accttcctccatgccccgcctcttcatcttctgcagggctcttagaggccatgcatgccagcaggcatagctagggtaggtctcttgttgacggagagct
gctgaggagaaacacacaatctacatttcactgactttcttgtgttaagagactgagatttttgtggttggttgtcacagcagctggcatggattacctt
gactaatacactggctatctattaatattccctatgtaaattctccaatgcagctctcaattatttactgtctatcattgccatcactttgaagaacatt
gtacagcaaaatgaaacccaatattatattattaaaagactgttgttgaggctttagctcagtaagccatattgcatgccctgatAAGAATCAATAGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGTTTTGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGAACATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAATCAATAGGGGaagtttctcttagttctagtgataataaaagacccctcaccttgtacccagcctgctcttttggacactctgcatcttggttgt
gatcatgttttcctcagttctgactctgtggctcatgtctagtaattgtgtgggctttctgatctgcattattctagttttctacctttgttttcctgcg
acaccacaatttcttgctaaaaaataaaaacaattccttttttaggtgtttattcaaatgtctcaaatattttttggtaaagaagctgatataaagatat
tttaaaatatgtagacttttatcattttgttttatttatttatttttttgagacggagtcctgtgcttcttgcccaggctggagtgcaatggggggatct
c Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 40756211 40756212 1001419 0 - pAlu13-40794835; RIP_Alu_chr13_040_01 NA NA SINE Alu Ya5a2 cattctgtcacccaagctagagtgcaatctctgcttactgcagcctctgcttcccaggttcaagtgattctcctgcctgagcctcccgagtagctgggat
tacaggcctggctaatttttgcatttttttttttttttcagtagagatggagttttgccatgttggccaggctggtctcaaactcctgacctcaggtgat
cctcccacctcagcctcccaaagtgctgggattacagtcatgagccaccgtgctaggcctaatcagctaacttttaatttttttgtagagatggtgtctc
cccatgttgcccaggctggtcttgaactcatgggctgtaaagttctaatggaggctacagataggaaagtgttgatagaattaaggtaAAGGTTTATAGA
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCC
GCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAGGTTTATAGAaaagttagtgtgtttgaacacaatgtaatgtg
gttgcgtcttacctgattgtgttatggggatggacattgtacccaactggggaatgtttcccccacctagtgctgtaaaacaggaggcatgtcaatctgc
cctttaagcaatattatttgaacatgctaaacgggaacaaataagattgtcagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggagg
ccgaggcgggtggatcacgaggtcaggagatcgagaccaaggtgaaaccccgtctctactaaaaatacaaaaagttagccgggcgtagtggcgggcgcct
gtggtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 41838089 41838090 1001420 0 + pAlu13-41876724;1104685158428; RIP_Alu_chr13_041_03 NA;NA NA;NA SINE Alu Yb7 tttctcagtttgaacaatcttggcattcttaaaataaaactcttaattatatgcattatctctttattgtatgaataatacatgaatatttgctttttta
tttttggctactaaaatatttgccaatattaaatttttctcttggataaatattcaggaacaaaactataaggcagttatttctgtttgttgtcatgatc
gagttttgggatcagagctatgtaagtcttaaaaaaatgggaaagtttcagattttttctttgtctaaaacccataaatatcacagagattatctatgtc
ttgaatgtttgttgtaacttttctataaaattaatcaggccttatccactttcagggtgtaaatctttacctgtgttttcaattAAAAAAATAGTTTTTC
GGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATAGTTTTTCtatctcttcttgagcaaattctgttaattttaatttcctacaattattatagtcataagttttttacacag
tattcctttatgaaaaaatctgatctctatgtagggttataaactctctaaaaaattcccaatattatgcagttgtgctttctattctcacaggttagtt
tattttaacatctattcaatggtacatcttattcattctgatgcttttatttttttctaaataatttatttctgattattatttactcctttttaatttt
gtttttttagcttcttaagttgaatgcttttttgatttaattgaaatttttcttatgtgataacaatgttaaaagtaatggattttctattgaaagtgac
attggctatattt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 86190965 86190966 1001421 0 - pAlu13-86229585;1104685253903; RIP_Alu_chr13_086_01 NA;NA NA;NA SINE Alu Ya5a2 tatctgcaaatagttgtgccctgagcattacacataaaactaatccaaatctaaactcattataatccttgaaaaatatattctactgtatacattccat
attttaccataaacatttcctattgccagtcaccataaaaaggaaccccaaagaaatgtaaaggtgcatcttctatgcactattcacattaaaacagtca
agaaatatttttgattctacctcctaaatattttataaatacattaaatttcttccatacttagtatatttctttagttatggttttcattatttcatat
cagaaaaataaaaattttcattgcttctttttattcagcttccaaactaatacagacacaaatatacatttatacactaaaattAGAAATGTTCAGTTAA
CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTTCAGTTAAaagtaa
cctttatttaaaattctgatagcaattgcttaatggctctgcataacctttgtaccaatctatacttctagtatttcttccaaagtgttatattttttat
tttttgtgctgttgttagctaataatagtaatacatagaaaaagtgttcatataccctccttttaatatttttttattgtcataagtaaatttcccagac
aatgttcaagtcatgatataaaagcaggtatatttgtcttgtttctgaatagagggttatctcttgaattcagtagataggagaaaatttgagatagaat
tttgggtatgtttacacaagcaaattagaggagattcaaaaaagtatttaatcagattaattcattaaaattattaaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 91059288 91059289 1001422 0 + pAlu13-91097923;1104685252576; RIP_Alu_chr13_091_02 NA;NA NA;NA SINE Alu Yg6 aaaagcagattgtatcatcttaaatacctacagctatctagggctgttcaggggactttgtggggtgagccaagagaaaatgttataattaaatagatat
gaggtaaaagagaaccaatatttgctcatttaaattatatttagttttgtgtaataagatttagaaagttccaaactgggatgatctgagctggtttcaa
tggtatttgctgttaatgattggacatcagttctgtgtatttgctttcccctttgatcatagggaaggtaaatttgtttatttagaatttgtttatttag
aattttgttagactaattgaatcagactattaataaaaagtcaaattcagtgtgacaacattgtaggtgtgtgccatcaaggcataaAATTTAGATTTGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAATTTAGATTTGAccagcaatctctaatgacacaggagttggtgatagtgtccttgtcagggaaggaaaatcaatctttcaggcatatt
aagtgaggtaaatattttgttgaagaggttctatcactgcaaattccagttaacagcaccagctctctgaaattaacaggccatgtaattctgaatctaa
taagattcgaatgctgtatcatattaggtgccagtagctaaagctctgagagccgggagtggtgggaagatgtaaacatgatcagttagcttctttttga
cagcaccttggaatgaactgacacaggcaacaaatgggatagaactgtgaaatagccaaaaacaatacaagaggctgagataaaaacagttcatttggca
acgtactgatt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:GPC5:NM:004466:2/8
0 chr13 92626420 92626421 1001423 0 - pAlu13-92665044;1104685252182; RIP_Alu_chr13_092_01 NA;NA NA;NA SINE Alu Ya5 ttttgcatcctgaaactttactaaatttgtttatcaaatctaggagcatttgggcagagattatggggttttctaggtataaaatcatactatctgcaaa
catatagtttaactttctatcttactattatgatgtcttttatttctttctcttgccttttcctctagctaggacttacagtactatgttgaataggaat
ggtgagagtgggctttcttgtcttgttctggctctcaagggaaatgcttccagctttttcccattctgtatgatgttggctgtgggcttgtcatagatgg
ctcttactattttgagaaatgtttcttcaagacctactttgtagagcctctagctttttaacatgaagctgtgctgaattttatcaaaAACCTTTTCTGC
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAATGGTGAAACCCC
GTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG
GAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAACCTTTTCT
GCatgtattgagatgatcatggggtttttgtttttagttctgcttatatgatgaatcacatttattgatctgtgtgtgttgaaccaactttgcatccaag
gaataaagcccacttgattatggtgaattaagttttttacatgtggttggatttgggttgctagtattttgttgaggatttttgcatctgtgttcatcaa
ggatattggcctgaagttttattttgtgtgtttgtgtgtctcttccagattttgctatcaggatgatgctgccctcataaaatgagttaaagaggagctc
ttcctcatctatttcttggaatagtttcagtaggaatgatatcagcttttctttatttacctgtagaaattggctgtgaatccatttggt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 98880629 99254797 1001424 0 - pAlu13-98919250;1104685250318; RIP_Alu_chr13_098_02 NA;NA NA;NA SINE Alu Yc1 atggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtnnnnnnnnnnnnnnnnnnnnaaaatcaatggctctcacatccgttagga
tggctattgtcaaaacaaaatcacaagtgttggtgaggaggggcagaaatcagaacccctgtgcgctgttcgtgcgaatgtaaaacagtgcggcctctat
ggaaaacactatggtggctcctcagaaaattaagtctagaatcaccttaggacctggcaattccacttctgggtatgtatctaaaagaattgaaagcagg
gacttgaagagagatttacacaatcatgttcacggcagcattattcaccttagctgaaaggtggacgcaacccaagtgttcatcAACAGATGGATGGATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAACAGATGGATGGATAaagaaaacgtgatatatgcttacatcagaatatgattcggccttcaaaaagagggaaatcctgacatattctacaacag
gatgacccttgaggatgttatgccaagtgaaataagccaatcatgaaaggataaacactatatgaatcctcttgtatgaggtccctagagtcatcaaatt
cttagaaagtagaatggggggtgccaggggctgggggaggggaaatggggagtcagtgtttcgtgggtacagagtttctgtttgggaggaagataaagtt
ctggagatggatggtggtgatggttacacaacaatgtgaatgtatttaatgctatgtaatcatgtttaaatggtaaattttacattatatgtattttacc
acaat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:CLYBL:NM:206808:2/9
0 chr13 107467032 107467033 1001425 0 + pAlu13-107505668; RIP_Alu_chr13_107_01 NA NA SINE Alu Ya4 ttccttggtacacattgactagtaacagtgtcctataggaattaacacactttatttcccataattatattttactttatatcttgctatttaattatac
tgcataagtgcttttccgtatgtttgttaaaacttgtggaatagggcattttacacttaaaaaatagccaaacatttgttttgcagctcatacctttcct
tcagcacatttcacattatatgattattgtttcatcaaatcattcatatcttttactatttgagtgcaaaattaactctcattacaaaaagaatagggag
aagaactaccttggatttttatttcagtaacctggctttccttctgagcaggcaaaacataattaaaggtcaaacctggtttAAAGTATGTTCTAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGAGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGTATGTTCTAATCTGatcgttaggcagtttgtctccagtggatgagcattcttgcactctgattgtttcatgtaggtggtagctggttgcaag
aaaggaggtgggtggctgatatgacgggtgggttcagattttatgacacttcctcatttccaggtagcattcttttcctacatgttgttaactaagtata
atcctcctcctgcctcctgggtgtggcttgtgcaggagtcattcttgacagttatctatgtttggtgccactcgtgagctgcctcctttcaatttggaga
atgctccaggtgtgctctttggcttccctggtgttgcaggaagtcagggaccccgaatggagggaccgggtagagctgtggcagaggaacataaattgtg
aaga Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 112041800 112041801 1001426 0 + pAlu13-112080437;1104685140405; RIP_Alu_chr13_112_02 NA;NA NA;NA SINE Alu Ya4 tattccatctgttatggtagtctgtgatcagtgacctttgatgttactattgtaattgttttaaggtgccacaaacagtgcccatataagacagtgaact
tcacggagaaacattgtatgttctgactattccatcaaccaatcgtctccccacctccctccttctcttcagtcctctctattccctgagacacaacaat
attgaaattaggccagttaagaaccttacaatggcctctaagtgttccagtaaaagaaagagtcgcacatatctcactttaatcaaaagctagaaatgat
tagctgaaggaggaaggcatgtcaattgctgagatgccaaaacctaggcatcttgcaccaaatagccaagttgcaaatgcaaagaaaaaaTTATTGAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTTATTGAACAGgaattaaaagtgctactccagtgagcacacaaatgatgagaaagtgaagcagccttattgctgatgtgaa
gaaagtatgagtggtctggacaggagatgaaaccagcacaatattcccttaagccacagcctaatccagagcaaccccccaactctcttcagtgaagaga
gttgtggagactgagagaggtgaggaagctgcagaagaaaagttggaagctagcaggagtttagttcatgaggttgaaagaaagaagccgtctccataac
ataaaagtgcaaggtgaagcagcaagtgctgatggagaagctgcagcaagttctccagaagacccagctgaggtcactgatgcaggtggccacaataaca
acagattttcaacgtagaag Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr13 112568969 112568970 1001427 0 - pAlu13-112607592;1104685140540; RIP_Alu_chr13_112_03 NA;NA NA;NA SINE Alu Ya5 gcccaactcggaagaaaatctcataaaagatacaaaagaatcaacaggtagctctgtttgatgacgttcatggcctggtggcattcaggaattattcaat
taaaataaatgaagacaaagaataagttctagaaaacttaaagcttttaaaacagtgaaataatatttgaattggttctcaagatagacctggtaaaaac
tgatttaagtgatgacgaaggataacagcagtgtttagtaaagaggaatgaaaacgactaaagcaggtaaataatggtgcacaggacacatagcaggact
tttgtgtttgaacccagcagtctgagggacaaacacacagggagagagaggtcaggctaaacaaggaacgaagccgatttctgtttAGAAGTCACCCAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GAAGTCACCCAGAaggggctgctgaagagggactttctccgaggtcagcgctggtgtctgcttgtacggctagttaaatacctgaggcatttaagcaggg
atggtctctgacatctaccgaatgcctggtgtggctctctcaggaagcacagggccccaccgggcctcccacacatgcctgtgctgcctttaatttaaaa
tcgagggaagctcccatgaatccagtcaattcggaaaacatccctggctcaatgggccaccctgacatggcaaccgagggaacacagcaaggatgtgcgt
caggaggcgcacacacccttctaacacagagctagctctggggtgtgtggggcagcagcggctaacagcgtttctaccgacaaagcacacaggaattca Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:ATP11A:NM:015205:25/30
0 chr13 89745657 89745658 1001428 0 - pAlu13-89784280;1104685252837; RIP_Alu_chr13_089_04 NA;NA NA;NA SINE Alu Yb7 tatacaccaagttttcttgagataagaataaattgaatagaaccatgataacctatcatttatattcctctatttacaacctaaatattctatgctacat
ttggtagttacacattattcccttaccaatactcttcactccactacattttagtagttctccaaaacaaactcaagtgtaataataagtttgttatttg
tactttacagttcaatagctgcagaatcaaataggaatgatttcttgttttcttaatgtagattttaagaatatacataaatatttttgttaaatttaag
aggatcatttatttgaattgcataaagaaaaatacaatttaaaagtaaattttcttgaactaaatgatcagtgttttttcaagcatgTAATGAAACTGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGTCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCATAAAAAAAA
AAAAAAAAATAATGAAACTGCAcctctgtccttattttatgattaatacataagttagttttaaatatttaaacaaaatatacacttgcttgtttacgga
ctaaacattcagtagctttttcttaagccgaggatgttttgcaagtaacacagtaaaatgtattaaagaattcaaatttcagattgtggaagaagcttca
tttgaattcaatgaaaaaatttttgaatctgtaaagcagatcattctcttaaattttctttctgacaaaatagaagaaaatcgcttatgttaaagcaaaa
ttgatgctttaaacctagaagttttaaatataaaatagtttcataatttaacatttgtaaatacttaggggtatgctgaaagtaatttagcatgaaaaca
tcaacagaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr14 39382714 39382715 1001429 0 - pAlu14-38302987;1104685636736; RIP_Alu_chr14_039_02 NA;NA NA;NA SINE Alu Ya4 ctaaagggcacattgcattaagcacatgatttacagctgtgatggtttagcatttgctctgctacttgagaataatggagagcaggttcttttaactaaa
gatacaatcgatcctgggagagcaaggagcaaggagtcagcaagtctagacacattccagagccatgagccctggattctatacaatccatgaggggttt
tatggcctgggctcagattatggtgtatcagggtattcttccaccctttagcacagagcttggcgctccaaaggccacaaggggttttagaccctggacc
ccagacattttccaggactcttttacattatgtcagacatgcaagccctgcctcagcttctcccaacactcagcttttcccaaaaGAGTTGATAAGAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAGAGTTGCTAAGAATCtcttttctagatcattttcaatgagtttgtattggtagaaaatactagtatctagatttattctgtattccagttg
tccatgaagaagacaaatgacacctggctgtaaaacttaacaagatatgttgtccattaagtgaaaagtgcccagcttgcaggcatgagatacaagaata
aagcttcttcaacaagattacttcagcacagcatgtgtcaaataagctaaaccactctattacctctcagaaattatagctgcattatcaatatccaaag
aacttgtctacaatttacatttccagaactgggcatacaatagagataatttcaaacaaagatgtctttattttccctgggatagacatgaagatgaagt
agaaaagat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr14 37429395 37429396 1001430 0 + pAlu14-36349682;1104685636232; RIP_Alu_chr14_037_01 NA;NA NA;NA SINE Alu Yi6 tcttgtttgggaggagcaggagatgaggtcaggaaggtgggagatcacactgaatataattattcaatgccaggctgaggattgtcaatctatttttctc
cctataataacgttagggtaaacaaaataaaattatttcaagaaacatatacaatgaaataataaaacataaatgaaaactaccagacaaggggaaatac
aaattaaaataagaagacaagaacagatgacattgctaaggaaaaactatttataagcctcctagtggccaaagcaaaaaggaacataagattgataaaa
ttattactgtccatgagaaaaaaactaattctatgagaaaagtgacaccaaatttaaaagaaatttcttatgtgggtttAATAATGTATAGAAAATTCTT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAGAAAAAAAAAAAAGAAATAATGTATAGAAAATTCTTTtaatcatatagatttatttaaatgtccttttataaaataagagagaaaatactgtgtatag
tggtgctttctaagtagaatgtgcatacagtcacctgggatctcattaaaatacaaatcctcttttgattactatagccttatagtatgtatcaagttgg
gtaatgtgatgtctccagctttgttctttttgcttaggattgctttggcaattcaagctcttttttagttccatatgaattttaaagtagtgatacggtt
tggctgtgtacccacccaaatctcatcttgagttgtagctcccataatccgcatgttttgtgggagggacccagtgggtgataattgaatcatgggggca
gtttcccccatactgttc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr14 55507679 55507680 1001431 0 - pAlu14-54427953;1104685122315; RIP_Alu_chr14_055_01 NA;NA NA;NA SINE Alu Ya5a2 aaaagcattagatttggatacagacagatttgttcagatccccaactctgcccttaactaaccgttttacctcagaaaagtaactaaagccctctgagcc
ccagtttttaaaatcaatgcattcatttaaaaaatacttattggtgaacaaagagacttagttcttgtagctctgcagctcaccctctgggttggagtgg
agggatgagggagttgctcaatctgggtgctggtccagtgagtggtgggcagtcagagggaggtacagaggagagaactgaaagactttgagtaactgga
ggctggaggtgcaatggagaatggtcccaaatgaggctggagaaggaagcagaggttggattatgaaggctttttaagctttgttcAAGAATTTGGACTT
CAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAATTTGGACTTtatttgaagggaaa
tgaagagcaatcacagggtcttaatcagaagaatgtgacccagtttgcatcctacaaggatctctctggctgctgtgtggggaatggattggatgagaat
gggtgggagggtaagaccaggagcagcaatgccagctagcagaaggtggttgcaatagtgcatgaaagatcatgtggcctggaccagggacaaggcagcc
aggcaccaggaaagtgggtggactccagggatgtttagaggttgggatcaacagggctggatgatgctgatgggcggagtggggagaggcaagaatcatg
agcaggactcaagtttgggcaacagaatggacagtgatgctattaactgagacagacacacaggacacaagg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr14 59645253 59645254 1001432 0 - pAlu14-58565528;1104685123410; RIP_Alu_chr14_059_01 NA;NA NA;NA SINE Alu Ya5 catttttgctgtgtcctcagatggcacagagagggacaaatcaagctctctggtacctcttctcataaggggactagtcccatcataccaaggacccacc
ttcatgacctaattacctcccaaaggcctcatctcaaaataccatcacattggggtttaagactgtaatatatgaattctggagagacacaaatattcag
tccataacatgctgaacatttctacctggacactaacctaagaaaagaaagctgcaatctacggagacggagaaagaaaagtcaaacttgaaaaggcaag
taaaaggggttatcaaacaattttgtgaacaattatgtctgttaaaaaaactattttctacttttcttctgtaataagttggtttttAAAAAATCAATAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATCAATATtacttctactattgttgctatcataaaattagaaataaattttgtatttgtcttaaattcattcaatctgtatataatatttata
tgtataaattttaatttcttctttccccccacaggaaagttccatctccttacacaggttttagccaggctatcttaaaaactcaaagctccttatttaa
agtgaaacacaaaattgaaaagttccttatctcaaaaagggttttttaaaaaaactctttagtaagttttaactattgctttagtatgttttacagagat
taatcctaaaagaataattatcaaaataacctgtcacccaatggtttgatgatttttaatccatggattcatttttttgtaacactaaaaggaaagctct
ct Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:C14orf135:NM:022495:1/10
0 chr14 94094375 94094376 1001433 0 - pAlu14-93014647; Ya5-MLS68; RIP_Alu_chr14_094_01 GTCATAAGCTGAACACCAGGTTTG AGCACAGGCTCCACTTATGCTG SINE Alu Ya5 atttaaggaagcagggataagttgcctgaccaggaaggccagggtggatgtggggaagcagagggcttgactgcctctctgcccctaggaaataccactg
ggccagatggggcagctgctgtgacaccactgatgtccccggcagggagccgctttttccagcatcccagaaactgcctgaactgtgctgtaggcatgaa
tcccactccctgacaccctcctctgctccactgcatcctaaattgcaacccagccctttctcaatggctgtcttggtctcccattccagcacaggctcca
cttatgctgccctcctgctaactgctcccaatccccttcccattccctggattccaaatggagccaggaaattaatctgcccttAAAAAGGCTGTCCTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCTCTCAAAAAAAAAAAAAAAAAAAA
AAAGGCTGTCCTTGttttgaatttgattggcaatgcaataatggtcatcatgaaaaatatgggaaagtaaaaaaaacctggagaagaaaataaaatcatt
tgcaaacctggtgttcagcttatgactagatataattggtttccttccagtcttgtaagaaatgggtatgtgctcatacagaacagcaacaacaaagctc
ttccagtcttggtttggatggaggtaggaagactatagatgctacagtccaaagagagctccatgcaaaaattccagagtaggtggtcaagaacaggtct
cctgattcttaaatgctttactcatgtgaaagaggactgaaaggtgttgagaggtggagactgagaaggaattacaaagaggaaggagagaagtgctt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED. Whole-genome experimental identification of insertion/deletion polymorphisms ofinterspersed repeats by a new general approach. Nucleic Acids Res. 2005 Jan 26;33(2):e16. PMID:15673711.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 58 NA 224 NA intergenic
0 chr14 59811154 59811155 1001434 0 + pAlu14-58731441; RIP_Alu_chr14_059_02 NA NA SINE Alu Yi6 cccttagattaagtgacttggaggaacttgatttagtaaaatggccagacagccttttggagcatcaacattttttttaagaagtttaactgtaaagaga
agagaggcacatgggtagctcgaggggaataagtcacatgaaaagttatttttaatgggtaacatgggtgacacttgtggctttaaaagtcacactccaa
ctgagaaatgttgataaaaaggagaaaaaggaaaatagtgtaacattcctgaaaaaactgtcatttaagactcctttgaaacatgggcaccaaagctagt
ctagtagaggatttattatcagtgagaggacagagtcctattacagcagaaaagtaggaggagagggttatgaaagAATTCATTGAAATGGTTCACTCAT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
GGAAAAAATTCATTGAAATGGTTCACTCATttattgatcttttttttctgtagtatccaatctgccattcattgtctctattgcaattttcagttcagta
aattgcttctcatttccatgaaactattttcagagtacctcttttttaattgacagtctgcaattgttttattcattcaatgtcatttcatatcttggtt
agtttctaattttgagctaatgaatactgagtctccctctttttaacttctgaattaaaaaaaaagtcatcttatttttctctgttcatttttacacttt
atttagcctaagtatctgaaattggctttgctagaaattacaattagttcactgttgttttctttcagtcccagacaaaaaagaaaaattttagatttct
ttcttt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PPM1A:NM:021003:1/6
0 chr15 24423617 24423618 1001435 0 - pAlu15-24290570; RIP_Alu_chr15_024_01 NA NA SINE Alu Yc1 cacaacatcctcaccaggagtagattccatctcaagaaaccactctttgctcatccataggaagcaactcctcattcattcaagtttaatcatgagattc
cagaaattcagggaaatcttcaagtttcacttctagttctgttgctattcccaccacatctgcaatgacttgaacccctcaaagtcatccatgagggctg
gaatccacatcttccaaactcctcttggtgttgatattttgacctcctcctataaatcatgaatgttcttactgacatctagaatgacatctagtccttt
ccagaatgttttcagtttactttgcccagatccgtaaaaacaatcactgtctatggcagctacagccttgtgaaatgtatttcttaaatAATAAAACTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAA
ATAAATAAATAAATAAATAAATAAAACTTGaaagtcagtttctccttgatctatgggctgtagaatggatgttgtgttagcagacatgaaaacaacattc
atctctttgtacatatccattagagctcttgagtgaccaggtacattgaaaatgagcagtaacattttgaaaggaatgttttttctgagcagaaggtctc
aactgtgggttaaaaatattcagttttgtaaacgtgttgacacccaggttttattgttggattttttgagcataggcggagtagattagcagaattctta
agggccctgggattttcaaaatggtgggtgagcattggcttcaacttaaagtcagcagctgcaattagcccctagcaagagagtcagcctgtcatttgaa
gctccgaagccagacaatg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GABRB3:NM:021912:3/9
0 chr15 42289307 42289308 1001436 0 - pAlu15-42081141; RIP_Alu_chr15_042_01 NA NA SINE Alu Yb7 aaacttgttccctagaattcaaggaagagccaggcgtatttagaataacataaaaacttaattcgaaaactcacattttgtgattaccagattagggaaa
tggaatggtgtttggaaggagaattgcactagttatagaggaaaatgaccttctgtgagagttggatgccctgtggttgctcttagattaatttgcctcc
ttacttgtcactgatcacacctacttcttgttgcagaaaaactgttcctttccatagctatagtcttaacctgttgtctaaataatgtagctaaatcagc
tgagcacatgggaatcagagactaaaagaagcacattaggcattcaataaatatttgctgaatgaatgaaatgctcagtaagcattaaAAGATGATGATA
CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGATGATAatgacaat
ggttaggatgaagaagaaaaggaaaggggacagaggaaggcatgaatagctgtaactctaaggcaattggctcaccaattacactgctgaagcgataaca
taacaatcacagttttcaggtactcggatgctggttctccagtttgtgtatcatctcagatttttggtttagattttcccttaaactgactcccttttag
tcctccatttaatgtctattaatccacagagaaaatgaaggaacaagagattaatagtagctaaaactttccaatgttttctttgtgcaaaggcttatct
cattttactctcacagtctctcatagagagggactattattatacctgttttacaaataaggaaactgagccttcgcagc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 58444536 58444537 1001437 0 - pAlu15-58236395; RIP_Alu_chr15_058_01 NA NA SINE Alu Ya5 actgtttctttcattaaacaaagttattaatcagtcaggagagagacttttcacattctgaatttacaaactgtgctttcttaagttaaatggcatgtta
ggagtatttctgatatgaaattggaaacttgcagacaccagaaggcattgcttatctttgtaaatacacatgttccaattaaaataggtactaaaatatt
ttggtggcacctcaaaactcccaatttagatttaatttagattaaaacacttactctttttaataaagttataaaattaattattaaaattgcctattga
agattaaaggcagtggaacgtttattttccttacaaaacaattttgtcttcaataagtgtgattgtgttaatcaattatgcTATTAAAAATACAACTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTCCACTGCCATATTAAAgtcatgacagtttttataattatagaaattatacctagctgcttatatagccataatcctgcaataagtataaata
attatctctattaattcagtttgcagttactctctattaaatcccgagttaaatggcaatttggggaccttcatttaaaatcctactaaatctctgttgt
tccatctgactgccaaagccccacatatgcacctcctactgttgattccagaaaccaatttatgaataaaatagtttttaaaccacaagtatttaaaagg
tccatttaagcttgaggtttgaggctctcaagaaaaaaggaaagagagtgtacacattgggtagaggatgctgacgaaagagatagaacaaatcttggtg
tctgg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ANXA2:NM:001002857:4/14
0 chr15 33883614 33883615 1001438 0 - pAlu15-33675447;1104685379493; RIP_Alu_chr15_033_01 NA;NA NA;NA SINE Alu Ya5 ctaagagttttagttattgtagcattataagtttcaatatctaggaaagcacaaatctcctgatgacttttctacttttgaatttccctgacttatttat
gtatatttattcttcaaaaatgtcttttacatcagcttgtctagttgccaagaaaccatttggatgccattaaatgtatcgattattttagtaacaattg
atacctgcagtactgagtctatgtaatattgaaaaattcctttctagttatagcatcttagcatttccacttagtaacatgtcgtttcctttatatcaat
cttacatatttattgttttatttactgctaggtatcttaccattttgttgcctttttaaattgaaaagttttgaaatgttcattaaaAATACTGAAACTG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAATA
CTGAAACTGacatataaatacagaaatcacattttgagacagaaaagagattacaaataaacaacacttaatcacacaaacaaaaatcagacttctcatt
tgcaacgtctgaagttacaaaatgctagaagtcaaaaagagattactgatggaaaaaaatagtcatatatcaggaaggaaaatcattttagactaaaaaa
aaaccagagaggaatcacagagtcactctgtgtcaaaaataaataaataaataaggactaaccgaatataaatgagccaaaaatcagacttcataatgat
gaacgatgaagaggagaagggagcatgacatacatgtcaaatgatagatagatagacatagacactgaaagataacagaaatatgttatatgaatg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr15 37478898 37478899 1001439 0 + pAlu15-37270743;1104685378596; RIP_Alu_chr15_037_03 NA;NA NA;NA SINE Alu Yc1 aagctgtaccttgtgctagatagggaatcatacccttcccaaatttgcctgggaaaaagcagagactccaagcaaggcgtgaggtcccaggctgctgagc
taagcctactattctcatgatcagggcagctcaggtttctctgcagtggggaatagcaaactctctgaaatatctaatatcaaaaccgtatgcctttaag
gtgaatagtcatggacacattctcctttgggagaaaaaagaaaaaagttctactaaaactaaagtcccagctgatttccgacacactcagcaatgaacaa
attgttaccaggccagccttccaggctagaggttctgacttcactccctcaggaccctcctcccaagtggaaactaacttattttTAAATGTCTGTGTTC
GGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGT
GGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACT
GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAAAAATAAAAATAAAAAAAATAAAAAAAAAAAAAAAATAAATGTCT
GTGTTCcctgtcaatgcaggcagacattttaaggagactttagacactatgcattgttacatgaataaccacatctgcatgcaaagcagtaagagatact
aactccaatagaccaaatgtgtgcttttccccattgctttcaactccaagaatctgaacaaacagaaaaggtcattctgatcttttttcttcaaagatta
acaataggaaaacaggaatagtatattttcttatgataaaagcagaagcttgttggcaacttcttttgaattcttactaccaaccacagtactggtgtta
aattaaaaaattactcatgacacttgtgtcaaagaacacaatttcaacaaattgagttttaaagatctaattggcttttactagtgattca Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr15 79822721 79822722 1001440 0 - pAlu15-79611584; RIP_Alu_chr15_079_02 NA NA SINE Alu Ya5 ccaatttcgaaaacgttaaaacatgagaaaatgggcctcttaagatgaaaaagttataagacgttaaggaggaaatcaaatacacattaataagtgatta
tgaaaatgagactattacatatgaaaacctatgggaagagtaccaaatttccacgagaaaaaacaaaaccctaaatgttctggttttttactaagacaaa
aaaaaataagccctctaggaaagtgaaagaacaagaaaacagacatgaggaaagacaataataatgaatggagacaaaattagaaataaacaaatctgga
aaaggataacacatgtcctaggaagagattatataaaacagaattaactcctccagaatattaaaaaatatggacatctgcccagttagaaaaTAAGCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGGAAAGAAGTTAAGCTTaactttgaagccaatttctatcaaagagtacaaccagaggaaacctatggctaaggagattcataacattc
gtacatatatatatatatatatatttttttttcacgttctgaattcaatatcactttattggtaaaagaatattgtgcctgaacaggaattaacctacca
atggaagttagattattaggaatctattaataaatatataagaatagataacataagaaaaacaataatagataatgtaagaagaatgtcattgcaagac
attttcaaaatgtatttaacatccatggatgcacctagaggacattatgctaagtgaaataagtcaatcacaaaaagacaaatactgtatgattccactt
atatgaggtatttagagcagtg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 76723727 76723728 1001441 0 + pAlu15-76512598;1104685618267; RIP_Alu_chr15_076_01 NA;NA NA;NA SINE Alu Ya5 acgatgtcaggagatcgagaccatcctggctaacacggtgaaacctcgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaattagctgggcatggtg
gcgggtacctgtagttccagctacttgggaggctgaggcaggagaatggtgtgaacccaggaggcagagcttgcagtgagcggagattgcaccactgcac
tccagcctgggtgacagagcgagactctgtctcaaaaaaaaaaaagattctattcacaatagtaacaaaaaccttagaatatatctagcaaaatatacgt
aaggcctttcatgaagagtgttgctatggtctgaatctgtcttccaaaacacatttgttaaaatttaattgccaagataatattAAGAGGTAGGGCCTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAGGTAGGGCCTTTaaggagtgattaagtcataatggcaagtcctcatagatgacattagtgtcttataaaagggcttgtgtggggggtttatc
tgttccttctgctgcatgagaacatagcatttgtcccctccagaggagccagcattcaaggcaccatcttggaagcagataccaggccctcactagacac
tgtacctgctggtgccttgatcttggacttcccaacctccagaactgagaaaataaacttctgttgtttgtaaattacccagtctctggtattttgttat
agcactacaaaaggcctaagacaaatacaaaaatactcaggaagagctgactaaattgaaatatagaccatatatattatgaatgggaggactcaatact
ataa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr15 98628514 98628515 1001442 0 - pAlu15-98403706;1104685149308; RIP_Alu_chr15_098_01 NA;NA NA;NA SINE Alu Yc1 gtggaagcaacccaaagtgtccacagatggatgagtaggtaaataaatatagcgtataggtataatggaatattattcagccttaaaaaggaaaacaatt
ctgacacatgctgtaacatagatgagccgtgaagacattatgctacgtgaaataagccagtcaccaaagaacaaatactgtgattccacttacgtagggt
agtgaattcacagagacggaaagtcgaatagcgctggccagatggctgagagggaggagggaatgaagagttgtctaatgggtacagagtttcagcttta
caagatgaagaaagttttggggataggtagtagtgatagtgtataacagtgtgaatatatttaatgccacttaattgtaagcttaaaAATGTTTAAAATG
GGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAATG
TTTAAAATGGgtaaaattttatgttatgcatattttaccacaatttttaaaaacatcctacatatcacctgccttttcagtatccataagctcatcaagg
taggactatgtctacaccatcaacattttgtcagtgcctggtacgcatgcaggagatgatccagaaatatttgtgtagtcagtgaatgcataaatgaatg
actgatgccatataccagcatcctttgcgaaggattcagtgctgaagtcacagaaacaaacactggctttacttttttaattcctaggcaaatttgcttc
tggagagccttttgtattctaagcacatcccacggatatggtgtattaaactctgtttgaaagtgtttatgcataaatataataatacacttacact Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:ADAMTS17:NM:139057:4/22
0 chr15 98630341 98630342 1001443 0 + pAlu15-98405546;1104685149304; RIP_Alu_chr15_098_02 NA;NA NA;NA SINE Alu Ya5 tagaatggatttctctatctctgcaaaaaagtcattgggattttgatagaaattgcattgaatctgtaaactgctttggataacattgatatcttaacaa
taagccttccactccatgaacatgatggctttccatttatgtcttctttaatttccttcattgatgttttacagctttccatgtaaaactctatccctta
tttggttaattcctaagtattttattctttttgatgctgctgaagacagaactgttttcttaattgtcttttcagattattgttagcatatagaaatgca
actgatttttgtggttggtttagtacgtggctactttgcaaagaatttattagcattctctctgtctctctctctgtgtgtgtAAGATTTAGGGTTTTCT
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTATAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAGATTCAGGGTTTTCTacatgtaataaatatgtcatctgtgaacagagatcattttactacttcttttcttatttggaggccttcaatttctttttct
tgcctaactgctctagctagaacttccagtgttatgttgaacagaagtagcaaaagcaggcactcttgccttgttccagattttaaagaaaaagctttca
gtctttcaccacggagtgtattattagctgtgagtttttcatatatgacctttataatgttgaggtagtttccttctattcctagtctattgagtgcttt
tatcatgaaaggctgctcaattttatcaaattcttttcctgtataaattgggatgatcattttctcttttcattttgttaatcaagtatatcactttttt
t Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:ADAMTS17:NM:139057:4/22
0 chr16 22753519 22753520 1001444 0 + pAlu16-22773455;1104685117330; RIP_Alu_chr16_022_01 NA;NA NA;NA SINE Alu Ya5 tagacaaatcatgtgtatacttaatataccattttatactgctattcatatcagtacatatagtagatataatatgctttatattccattttataacttg
caattttatttaacaatgtgatgcagatatctctccatgccaataagtatatctacagaatcattttaaatgctcagaattattttaaatagcatctagt
tggatagatatactattatttatacaatcattaaccaaatcgcctactgatagacatttagattgctcccactttttgctctttaacaatgaaaggacag
cagcaagtatcgtacccaatgattttcctcagaataaatttatttcagaggaattttggggtttgtgggtaaccatgctttAAAAAGTATCCATTTTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGTGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
GTATCCATTTTTTGatacaaattaccaagttttccccacccctatggcaatagagctgaagcatttatacttccctagcacagtctgaaaggactttttt
ccacatccttgtcaacattgactattagcaacctatttatttgctctttgtcaatctaatgcatgaaaactatctccttttaatttgaattttggggtat
ttaaaaatatttattagccatttgcattcattttctgaaatttttggttaattttttccctgttggagatatttctttccatttttaaaagaggatgttt
aatgattaatgctgcttatactggattgactttatcttttagtgttttattacttcagatgtttctagtgagctgaatttggcttggttctacat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:HS3ST2:NM:006043:1/2
0 chr16 71632812 71632813 1001445 0 + pAlu16-72810817;1104685106508; RIP_Alu_chr16_071_02 NA;NA NA;NA SINE Alu Ya5 ggccacctttccaaagagtgggcttttttgattcacctttgcttctcccattcactgttgagtccccatttgaaggggattcacaagcagtgctctggtc
ctcagccagaccctgccctgttttattctgtaattatttcctaccttcaaacaaacaatgaggaagaccacacctccctccagttacacatctgggagtc
cgcaccaggatttcctctgtcacccaatttttccactgtctggacaatttttatagtttcaccagcaagggcaaaatatattgacagtcctttcccacaa
ggtgtaaaagttctctgctttccccaaatatacctctggatttcctatctgttgaaggaaaaaccagcttcgactgcctccgttAAAAAAGGGTGTGCAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AGGGTGTGCAGGGCggctgaggtgaccctactaccgtcatttctgccattctttacttgaacaacattttttaagtgggcaaaatactatcttatgaaaa
acaaaccaacaggggcccaggtaacacacattcatatagtcagttacacagactgaaagtcttcatcaatgcccatctcaattacgttatcaaataacat
aaggggacactattcaagattccatcagaacagagatggcatttaaaagcagtcgcttgagtagtgacaccaacctcctgccgcacacactgaaatccat
gagcctcttctaaagtgtccaaaagttgacctgacactttaacgctgatgcagatactccacaaaaaaaagcggagctgttaaaagggaagcagaaac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:ZFHX3:NM:006885:1/10
0 chr16 82223876 82223877 1001446 0 + pAlu16-83405281;1104685107429; RIP_Alu_chr16_082_01 NA;NA NA;NA SINE Alu Yb7 tcagtgtcctcacttacagaatagggattttggtaatgaaggccaccagctccgtgcatgacaaggtgctgaatgctttctgtttattatcacgccgaat
ccttatgatttctttgtgaggtgcattctactagaccctccagttctcagataaggaagctgaaggttagagagctaaggtaatgcacccaggttacagc
aggttatcctcaagttccccacggagtagtgacattttgtcaccattgatgctatattactgataatgatcaatagataggttactggaaaggggtccag
atccagatcccaagagagtgttcttggatctcatgcaagaaagaattcagggcgagtccatagagtaaagtgaaagcaagtttattAAGAAAGTAAAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
TAAATAAAAAAAAAAAAAAAAGAAAGTAAAGGAataaaagaatggctgctctataggcagagcaacagcatgagctgctagttggccatttttatggtta
tctcttgattatatgctaaacaaaaggtggattattcttgggttttccgggaaaggggtgggcagttcccagaactgagagtttctcccccttttagacc
atataggtaacttcctgatgttaccatggcatttgtaaactgtcatggcactggtgggagtgtcttttgacatgctaatgtattataattagcatataat
gagcagtgaaaatgaccagaggtcactcttgttgccgtcttggttttggtaggttttggccagcttctttactgcaacctgttttatcagcaaggtcttc
ctgatctaaatcttgtgct Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:CDH13:NM:001257:8/14
0 chr17 27917973 27917974 1001447 0 - pAlu17-30742559;1104685008941; RIP_Alu_chr17_027_03 NA;NA NA;NA SINE Alu Yg6 atagccatgaacaggataaacaaggttcctgtcctcaggatgcttagacaaatgctctaattcagctcttcttttttcatttcctgctcaatttattgac
ttctgccaccccttcatttgttgccctttcccagcatcctctaccttcagccagaaacccctgttttctcagtagctttgtcctgttaatatcccagaag
cctacagccgcatcatctgctcctttttgatttcctccattctgtgaacatggatggagcacgggctgccctcagtcccagctctgccgctccccacctt
ggatgcagaggctcccattcctctgttggaaagatcacacagatgtgtctcagaggcttggtacacagtgcctgcctgatttggttaaaAAGAAGCTTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTGACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGACATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGAAGCTTAAaagagaaagaccaaagagggaagcttttacaagttgctttttaaagctttggaagtttgtgtttgaggcttcaaacagataactaatt
aagttttagcactccctgtgattcggacaacaaccgtaactactgtcatgttactactattaattgattctatttggttccaatgacacgagtcaaaaaa
tgttttcccaactgtggttggactcagttgactttccaatcatatcactcccctccttcagtggctactcaagatcaggtctgaggtcactcccacagcc
tacacgatgtggccccacctcctcactctgcattttcctgcacttacctgcaggctcacctgcaggccacaccagctttccttggcttcctcaaggaaag
c Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:MYO1D:NM:015194:21/22
0 chr17 63606371 63606623 1001448 0 + pAlu17-63077263; RIP_Alu_chr17_063_04 NA NA SINE Alu Y ggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatgatccgcccgcctcggcctcccaaagtgttgggtttacaggcgtaagccag
cgtgcccagcctatctgtggtatttttagtgtgatgtctagaacttcatatacttttttggattactttaattgtagggctgtatccaaactgatcaaat
gctctcggaggtaactatttggagaagtgacttcactgattgattaaaataaatgactggcatggaataagnnnnnnnnnnnnnnnnnnnnactggcatg
gaataaggattaaaatatattaatctgaaacatttaaaattgcattaatgttataacagcctaaagcaaaactaatgaatcacataaaaAATCCCCCACG
TGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGCCGGGCGGATCATGAGGTCAGGAGATTGGGACCATCCTGGCTAACACG
ATGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGCCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTG
TGAACCCGGCAGGTGGAGCTTGTAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACGGAACGAGACTCCGTCTCAAAAAAAAATCCCCCACG
ctgttgtccttactagtttactttgtgctagacacttttgcatgtatatgcatacaacttttattctgtttttaaactttgcattacatatacattcttc
catattatatgatcttcattaaaatagttaaatggctgcataaaaaaccatgtggttcctggaccattatgctgttccctcattccccttttgtttttaa
tggaatagagcaaagaacatcttctgtattattgtcaagaatagtgagaggtgacagcgtgctggcagtcctcacagccctcgcttgctctcggcgcctc
ctctccctgggctcccactttggcggcacttgaggagcccttcagcccaccactgcactgtgggagcccctttctgggctggccaaggc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 63599913 63600215 1001449 0 + pAlu17-63105691; RIP_Alu_chr17_063_05 NA NA SINE Alu Y tgagccaagttccactttcagaaatgctatgggcaaagcttcatgatgtttatgaattcatacataaagactataaatttcagccaggggcaatggctca
tgctgataacagctactcgggaggctgaggaaggacaatcgtttgaggctaggaattagagaccagcctgggtaacacagctagattccccgctgtcttc
ccctctaaaaataaatacataaataaattagtgtggtggcatgcacctgtaatcctagctactaggaagcctgaggcagggaggatggtttgaacccagg
agatcgaggctgcagtgagctatgattatgcaattgcaccccagccttggcaatagagaaagaccccactctctatttttttaaaaaaaggCTGTAAATT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGGAGTTCAAGACCATCCTGGCTAACATGG
TGAAACCCTGTCTCTATTAAAAATACAAAAAATTAGCCAGGTGTGGAGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGA
GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGAGGGCGCCTGTGTACTCCAGCCTGGGCAAGAGTGAGTGAGACTCCATCTTAAAAAAAAAAAAAAAAA
AAAAACTGTAAATTtctgaatgagttcttaagatgaaatacatcttacttgtgcccacttccttttcttagaaattaactccaaaggccagtcacggtgg
ctcatgcctgtaatcctagcactttaggaggccaaggtgggtggatcacctgaggtcaagagagtgagaccagcctggccaacatagtgaaaccccatct
ctactaaaaatacaaaaattagcctggcgtggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaagca
gatcttacagtgagccgagatcatgccactgcactccagcctgggcaaccgagcaagaccccatctcaagaaaaaaaaaaaaaagaaagaaattaactcc
aaaat UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 14468380 14468381 1001450 0 + pAlu17-14470710;1104685551722; RIP_Alu_chr17_014_04 NA;NA NA;NA SINE Alu Ya5 gtgatcgtgggtgtgagtgagctgagaaagctcagtttcctttgctcgtcatggcctcttcttttgagcctctcacagcacaacatgataacaacatgac
aggaatatgagataaggagtttgtggaacaaagacacaagctacaagtcacattggattttcaggctaagaacctttattatgcagacaacaaatattcc
ataatgtggcctatactacgtaagtacaaatacaggtgaagcatctttgtatggtacacacttcaatttgatcactctgtctaccctgtgtacaaatgga
atgcactggacttttatttgtcttactgatattggcccattattattcagtctcctgttgtagcaattgtcactatcttcctcttAAAGCTTCCATTTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGCTTCCATTTGCttgtgctgaccgtttcctatcttctctccaattgctaaagctcttatattctttgttgagcaggtgatcaacttaggtgacaaa
ttcacacttctcaccagctcccttaaaactactgacagcaactgatgtctatggagtgacttactgtatctgtcaagagctctgctaggcacttaacata
cattatgtcatttaatcaaaacaatgccttactttaactattattattgttcctgttgcatagacaaaagcccgagactcagtaatactctgtgacttgc
ccaaggtcacagagctaggcagggatggacctgggttcaatgacaggctgtatgacttcaagtcttatactttttgatttgagacactgccttagaacac
t Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr18 52857192 52857193 1001451 0 + pAlu18-54491185;1104685560273; RIP_Alu_chr18_052_01 NA;ATCCATCCCTGATTTCATTCC NA;TTCTCATCGGAATCTACCAGAA SINE Alu Yb7 atccatagtgtacacacgcccgcagcccctccttctgatggtttaacttggagcaatcctcaatggttgtgcatagccagatacacgcactgtgcacaca
ggcactgggttctgggtcacctccctggcatcccaggcctctgtctgcttccttcagtgcttccttcttcagccgtccctccctggatcccagccacctg
agctccatccatccctgatttcattccttttttttcctcttccagctctagtccacagccttcctccccaggacatgtgattcaagcctgaagcatacaa
tgggagcacaaaggaggaggggacagagaaaagaaatgagcatcagccttgggaatgtctcctctgactgtagagtcaggagacattAAGATGAACATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGATGAACATTCactggaacatatacattctggtagattccgatgagaattaagcccattcattcatctggtaaatatctagtgaacatctac
catgcatcaggcagagaactaggtgctgggattgtagtggggaaggcaacagttgtgacacctgcccttatgggctcacagtctagtgggctggggtggg
gactaagccagccacaaattgtaacatgagcagtgatggaaacaagggcagctgagacccaatagcccagggaaggagtgggcaaggtcaacccggggtc
tctgaaggaagataaggagctggatgttggtggagcagttggaagcgggaagagcttctagagaagaaaatagcacgtgtgaggtccctgaggcagaagg
gagagt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;60 NA;550 NA;231 NA;NA intergenic
0 chr18 60324777 60324778 1001452 0 - pAlu18-61958756;1104685562324; RIP_Alu_chr18_060_02 NA;NA NA;NA SINE Alu Yh9 attttgctaagtgaaataaaccagacacagaaggacaaatcctacataataccaattatatggtaaatatagtcaaactcataaaattatggaggcgatg
gataggcttatggcgtaaattgaagtaaggacttcacaaccgtatttttctccaaacttaccaaattatatagatataacatatacaagtttttgtatct
caaaaaattatataaaaattttaaatttgataaatcattttaagattagaagcaatatctgtcaaaaagattatgtattaatatcttcatggtcatcatt
ttgtagttgtacgattttgagtgatttttgtctgcaatgctctgcttctgaattataaagacatctatttattatatgaagattaaAAGCAATTCCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG
TGAAACCCCGCCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAGCAATTCCTTTTGgtaaaaatttttaaaaagtgcatagttaaattatactgaaacaaacatattagaagtaataaaaatggaaaaatgtata
gacttgaatttgcacaaaataaaaaatgataaggcaaatataaaaatggaaaaaattgtaagtacagtggaaataatgtctttaaaatgcagaaatgcag
aaacccaatatacatatgaaaaattctccattgccactaaaatgaaagaaatgcaattcagaccatgtcatttctctccttgaaatctgcgtcgttcttt
tttttcaataaaaattgaagtccttatgtattagtccattcttgcactgctatgaagatatgcctgagactgagtactttccgaagaaatgaggtgtagt
tggctca Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr18 72082928 72082929 1001453 0 - pAlu18-73716907;1104685089338; RIP_Alu_chr18_072_01 NA;NA NA;NA SINE Alu Yi6 tgtaccttgttagtatggtggattactatcttagtacatttgggctgctataacaaaataccataaatgtgtcccttataaacaacagaaatttatttgt
cacagttctgaaggctgggaagtccaaaatcaaggcactggcagaattagtgactggtgagggcccactttctggttcatagaaagcatcttctcactgt
gtcctcacatggtagaagggatgagggagttctctggaatctctagtatcattcacaagggctgtaccctcatgacctaataactttcaaaggcccatct
ccaaataccatcactttgagggctctgctttcatgacttaataacttctaaaggcacacctccaaataccatcactttgagtgttAAGATTTAGCTTATG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGATTTAGCTTATGatttttgagggagatataaacattcagtctataacaattatattgattgattttcaaatattaaactagaataa
acttctggaactaaactcctggaactcctggaataaacttctcatgatcattacacacagacatattttagattttttttttttactgaatgctatttga
taatattttcttaaagatctttacatttatattcatgagtgctattggtctatagttttctttttttgcactgtctctgattttagtatcaaggcactac
tgacttcacaaaatgaagtgggaagggtttctttctcttctatcttctggaagaaattgtgtactattggtgttaattttttaaatgattggtagatttt
gctagtaaaat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr18 63289851 63289852 1001454 0 - pAlu18-64923829; RIP_Alu_chr18_063_01 NA NA SINE Alu Ya5 acacggtattaaaatttaggaatgtctgactcctaaggcccacagttgggcctatttgtagtgtgacttgggacaagtcacttaaccattctgagccata
gtttcctcatctgtaaaatggcaatactaatatctaccttgcatttttattctaaatatggctgatacaaagaacacattaaatagtgcttttccatgtg
ttggaaaaattatttacaatttatttcaatgaagttcactaataaattatttctttttcaatatatatattcacttttatatatagtttaataaggcaat
agctattaatatacacattgaaataatttcaccaatactagtttttttacaatgacaggttttcttacaatgacagattttcttAAAATGACAGGATTCC
GGCCGGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATGACAGGATTCCtatacatatatttggagaaattattgagcaaggccaatctaaattacttagaaagttaaaaaataaaatatg
taaattaagcttaataatattactctgaaatacagaatacttaaaactttgaaaaatttagtgtttattctatgaccaagtcactttctcacatccaatg
aacctattctctctctctcttccataaaaatttctctggtactttcattagtccttttcggaacttttaaaaatttagtgtagctagtattctagttctc
aatcaaatgcatgttacacatcaagctaccataatgtactggtttttttttttttattgtgttttgtttgtctaaggcaggtcttcaaaagcatgataat
tttcatcaagga Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 34766545 34766546 1001455 0 + pAlu18-36400538;1104685178894; RIP_Alu_chr18_034_01 NA;NA NA;NA SINE Alu Ya5 tttgagccctgtaatctttttacaaagatcgacccatgtgattcttatgagtgccccagatgagagccaaggccctaaaggaaaagatggctaacatgac
tggattctccaaaaaagtatattgtcattgacattattcatcacatggctacacaaaagtcaatgtcaaaattatttttagaattcggggctagaatata
aaataatatgtacagtttagctattacctatctactagacataattaaacattatacacttgaaaaatatataccaatacttttttaaaatgtgcttctt
tggtgttcagattataagtgattttcaatttattttaacaattataagtgattgttcaactatttacctcagtttcaagaaatctcAAAAGCAAATTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGCAAATTTGAaactcaagtcatggcaactagatagacaagttttaattcatattttgtcttccccttatcattgaagcagatttttaaaaat
tatacattattatttcaagtatacattttagtataaatttctttactgccatagtgtaaaacataaaagaaaagaacagaagagaaggtgtaggggcaat
gaataaagggaaaaaattatgtctcaaaaaggggaggatgaaaacaaggggaaagaaaggaaatgagacggcaagaaggaaagcatagcaggctcattca
agaggaactcctctgaacctgctgctatcatacattcagaaacacctgtgtttggaaatgaccaagtcattttcagcccaagtgaggggtgcttcaagaa
tgag Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr18 1225791 1225792 1001456 0 + pAlu18-1225790;1104685493412; RIP_Alu_chr18_001_01 NA;NA NA;NA SINE Alu Yc2 ttttgttcattcttattcttctgcttctttgtactaaattagtgttttctagattatatatgttacaaacctaatgatatattgttataattattacttt
gtacaactttatgtcctttaaagaagctgagaaaagaaagaagagcaattaaatatttatgccttgttatattaacctttttagttctcttcatttgttc
cagtgaattccaggtactattggtatcatttaattattccaatactgttttgctctaattcaccttatttgtgatattttctaatatatcacatttctat
gtgttacaggcccaataatacagttatatacatattattcatatgattgcttttaagtcagttaagaaatttgcaaatatagtttttaaaAATAATTACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGAAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATAATTACAtaaacaagtacttttactggcactctattttatcatgtggacttgaactatggtctgagttcactttcatttagaa
ctttaatgtttgttacaaggaatatctgcttacaacaaattctgtccatttttgtttatttgaagatgcttttatttcactgtcattttttaaagttagt
tttcttggatatatgattatttctcgacagggtttttttttcctttcaatttattactttactttgaatttgactttccactgcctctgtcctccattgt
ttctaatgagaagtcagctgcaaatatttcaaagcaaatattaaatattaatattaaatattacagtttacttgaagtgatgggttgtttttctcttgct
gttctcagaatttt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr19 62117342 62117343 1001457 0 + pAlu19-62101553;1104685154230; RIP_Alu_chr19_062_01 NA;NA NA;NA SINE Alu Y cccgtagtcccagctattcaggaggctgaggtgggacaatcgcctgagcctgagaagtcgaggctgcagtgagctgagatccttgcaccactacactcca
gcctgggtgacaggcagagtgagacctgtatcaaaaaaaataaaaataaaaaaaaggaaattcatggagaactttggactctccccagacttagctacta
atagcctaccaaagaccagcagccttaccaataacacagtcaattaacacatattttgtatgttacatgtattatatactatactcctgaagtaaagtaa
gctagagaaaagaaaatgttattaagataatcataatgaagaaaaaatatgttcactcttcactaagtggaagcagatcatcttaaAAGTCTTCATCCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCTGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGTCTTCATCCTCGgtcatcttccattaagtaggcagcggagaaggaggaagaggaggggttggtcttgctatggcaggggtgtcagaggcaaagaaa
acctgtatataagcggactcgcacatttcaaacctgtgttgtttgagggtcaactgtatagtatataatgcaatataatatgtaatataggccaggtgtg
gtggctcacgcctgtaatcccattacattgggaggccgatgtcgggcagattactgaggtcaggagttcgagaccagcctgaccaacatggagaaaaacc
gtnnnnnnnnnnnnnnnnnnnncagtggctcatacctgtcactccagcactttgggaggccaaagtaggtggatcactggagcccaggagcttgagacca
ac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr19 20537828 20537829 1001458 0 - pAlu19-20522022;1104685514400; RIP_Alu_chr19_020_02 NA;NA NA;NA SINE Alu Y ggttgcagtgagccaagatcatgccattgaactccagcctgggccacagggtgattccgtctcaaaaaaaaaaaaaaaaagtaagcacttccttcttatg
taaacactgtgtttgagtaatttccctggatttttctaacacttagtttcaaaaaccaagtaaataactctgacatggaaatcaaagcttgaacctagtg
actccaagctaaggctgatattaagcctgcaacaggatgttactaaagactcagtttttttctggggagcctcccctgcacatgtcccagcctgctcacc
ccagccatagaaggaggctttatcctgagagaagctacagagccctggaaagctggggccccacaggcagatgcagctgaggttAAGATGAAAGGAAACT
GCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAAGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGATGAAAGGAAACTtagagggtcttattgatgatgaagttgttatgttttgtggcactttctacactttgtaaaataaaaaatattaatttatgtta
aaaaaatgaattccaaaaaaaattgcaacagcagaaaataccaactaatttaagatctttatggcttgcaaagatgtaagcagaaaagggctttcttttt
agggaggagcaaacaagattagaaaggaggtgggaggtgaatggcaaacggagagtgaaaaagtcatattttagatcagaggatgtcttaccctgaaatc
agcatgttcttaggagggacataaaatagggttgtatgctgactcagactgagggtagctcaaagttcaggagcctgagggagggagataagcttaagaa
g Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:ZNF737:NM:001159293:1/4
0 chr1 87715307 87715308 1001459 0 - pAlu1-87235024; RIP_Alu_chr1_087_02 NA NA SINE Alu Y ttaaaatttgcattttaaaaagtatttaaaatataaacttttatatcaagaaataagagaaacaaagcaaagtcaaatatacatatacataaaaacttca
aaatttatggctgagtttagatataccacaatccacctagaagataggtatttataccagggctctatttctgtgtgactcaaaggcaccaaaagggcat
tataaatattaataaaaacctcgaaagctaaaccacatttttatggagttagaagcacaaactgaaagaattaatttgagaaggagacggtggtattttt
ctatggttgttttgttttgcttttactgagaaatccagtagttccaattctgtcacaaaaaggaaaattgtatagcttgttgttttGAAAATGGGTGATG
TGGCCGGGTGCGGTGGCTCACGCCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACAT
GGTGAAACCCCGTCTCCACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCCGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAATGGGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAGAAA
AGAAAAGAAAATGGGTGATGcttgggccagatgcggtggctcacgcctgtaatcccaacactttgggaggccaaggcaggcagatcacgaggtcaggagc
tcgagaccagcctggccaacatagtgaaaccccgtctccactaaaaatacaataaattagccaggcgtggtggcgggtgcctgtaatcccagctactcgg
gaggctgaggcaggagaatcgcctgaacctgggaggcagaggttgcagtgagccaagactgtgacactgcactccaacccgggcaatagtgcgagactct
gtctcaaaaaaaaaaagaaaaaagaaagaaaagaaaacggccaatgcatgattgtgtcaggccacacacaaacatgcagaggatcaagaatattgttttc
agcaca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 104855606 104855607 1001460 0 + pAlu1-104211118; RIP_Alu_chr1_104_01 NA NA SINE Alu Ya5 atattagtaaagaataaatgataaatgaccaatgattccaccttataaaatttaaaaaaatagaacaaatgcagtccgaagcaaaaagaaagtaattcag
aacagaaattaataaaattgaaaacagcaaaacaatatggaaaaattaaaaaaatgctcacttttggtatgataaataaaactgacaaacctgtatcagg
tacaagaaaaaaaaaaaggaatgtaaacacacatttccaatatcagaatgagaaaagagaaattactacagatattacagatgttaagtggataatgaga
aatattatggacaattctttgccaaaattattcaacttacatataatttaaaaattctacacaaattaccaaattcattttttagtgatAAGAATAGCCC
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAATAGCCCgtattttcaactgtgtcaccttcagaaatgtatccaaactcgccatgattcacttactatgatacaggaat
attaatagttcatacactagaagattgtatgagggttaaaggaattaacacatggaaagtccttcaaatagtatctatcacataatatgagtcatgtatg
tgtgtcaccattattaatttccttgattttaacttttttttttgtttgtttttggcttttagggttttttctttcagctaagctgtcctttttaaaatgt
gtgaagtgtttaattcaacaatttcattatttcaataaattgtagtttaattatttgatataattttccaaaacattgaagtcatatatatgaattaaga
caatccaccagagcatat Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 1574335 1637541 1001461 0 - pAlu1-1516710; RIP_Alu_chr1_001_01 NA NA SINE Alu Ya3 ggggtttcaccatgttggccaggatggccttgaactcctgacctcaggtgatccgcccgcctcagcctcccaaagtgctaggattacaggcataagcctc
cgtgcccggcttcatgtgaaatttttgaagtgaggtttctttgcatgacactttatttctcattagggaagcatgctagagtgaaagaaaaagaaagaga
gcacgaacgtcggaaacggcatcgagaagaacaggataaagctcgccgggaatgggaaagacagaagagaagggagatggcaagggagcattccaggaga
gaaaggtgagtcggctgggtcagttgaggactttataaaagggctgtggtagtgtgtcccatcctagaaatgaagaagaatttggcaatAGAAGTCACAT
CTGAGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAGGTGAGGAGATGGAGACCATCCTGGCTGACA
TGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGAAGGTGGAGCTTGCATTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAGAAG
AAGTCACATgtagaagtcacatttggtgcagaagtggtagacatggaaacagcacagtgaacgctggacgaggctgaccaagagaactgtcctgagggag
tgagttttcactgcatctggaagtaagaacgggtgtgatttgattgagggaagacaatgaagggatcagaaatctgcatgtccggccgggcgcggtggct
catgcctgtaatcctagcactttaggaggctgaggtggttggatcccttgagcctggaggtcaaggctgcagtaagctatgaccatgctattgcactcca
gcctggttgacagagtgagactgtctcaaaaaaaggagaagggagatcctaaaaaccttgaaacagtctggaattcgggaccctggactcccaggactcc
tggccattagt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CDC2L2:NM:033529:5/20
0 chr1 227026554 227026555 1001462 0 - pAlu1-225332040;1104685074864; RIP_Alu_chr1_225_02 NA;NA NA;NA SINE Alu Y agcagacctaccctaaaagagtggccaaaggttgttctctacgtagaaagaaaacaataaaagaagcaagtttgaaacatcaggaaggatgaaagaagac
agtaagcaaaaaaaaaaaatgggtaaatacaataaactttcttctcctcttgagatttctaaataatgtttgacgttgaaactaaaactataacattgtt
tggtgtgactcttaatgtatatagaggaatacttgagacaagtatgttctaaatggcagatgcaagggatgtaaaggcaggtaagattttttttgcttca
cacaaattggcaaaatatgactgtaagactatatatagactacaataagtcatatatagaaaatgtaatacttagagcaaccattaaaAACTATACAAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAAAAAAAA
AAAAAAAAAACTATACAAAGaaatatattcaaaaacacgatagataaaccaaaataaaatttttaaaaatgtttgttacccacaataaggcaggaaagag
caaacagggaaaagaaaagcagagagaacaaacagaaaacaaaaacataaaacaacagacttaagtcctaacatatcaataattactttaaacacaaatg
atctaaatacaccaattataagacagagattggcaaattagaaaccatgacctaaatacagcttgcctaaagacattcacttctaatacaataatataag
caggttgaaagtaaaataatagaaaaagatatactacacaaacattgaccccaaaaaacaaaaagcaggactgacaacattaatatcagataaaacagac
tacagagc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr1 232137188 232137189 1001463 0 + pAlu1-230445829;1104685320621; RIP_Alu_chr1_230_03 NA;NA NA;NA SINE Alu Ya5 aagcaaataatttccctgataataactagtcagctagatgggttatactattgagttacatgtgcatttatcttgttttacaaattaccattagacaaga
aaaaaatcaattattacagagatattttaatgagctgtcttaaaaatacacttcttgttgaagtaaaatatccaaaatgaaatgaatgttaattataagt
gtacagcttgatgaattattacaaaatgaatatacctttctttactgcatctagagcaagaaacagaatattactggcatgtaagtgattttttcagata
ccactatacaggagatcttattaattttaaaataatcaaaaaagccactggctttccctctgaagcaaaggtagctccctatgcagatAAACAATGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAACAATGTTTCaatgaaaatctaagtggatcctgtcttttacaaagaagctgtgtctagcctggtattctgccaggatgatcaagatagcttacatac
attctaatcagtgtatcatgtgaaaaatgggatcttatcatgcttcttggaagctttaggttttctttgtaattttaatatccctttgcaagagctgact
tccaggcaagatctctgtgctgaaattcccatatgttatgtatgtttacttgcttttccactagataccttaacatttcagtcatgattattttaaagtt
tcattctggtgaaaccaggttgtctctgcatctggttctattgatggctttatttcttcacaatgagctgggttttccttgccctttttttttttttttt
t Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:SLC35F3:NM:173508:2/8
0 chr1 225668901 225668902 1001464 0 + pAlu1-223987819;1104685057095; RIP_Alu_chr1_223_01 NA;NA NA;NA SINE Alu Ya5 cttcttatgtgggtgctgcccatgactccccaaaacaattacaacagtaacattggagatcactgatcacagatcagtataacagaaataataatgatga
aaaagtttgaaatattgtgagaattacagaaacgtgacacagagaccatgaaatgagcacatgctgttagaaaaatgtcaaagataggctggggcatggt
ggctcatacctgtcaccccagcactttgggaggccaaggtgagagaatcacttgagcccaggagttcaagacagtctgggcaacatagtgacagcctcat
ctcttaaaaaaaaaaaaaaaagttaaaccaggtatgcctttaattgcagagcattcccaatcactcagcccaccactgctcctttAAGAAGGCTCTTTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAGGCTCTTTGTGgatgttctgtggttctagccctgcacattcccagtttcctcttgcatgattctaccttccaccgaaacagagcaagatctgc
ttaagatcctataaaaatgactttggcatgtgccctttgcctgggaacagctttttcagttgctgctgctgctgtgtaatatgttaggttacatggacta
ccattttttgttaaagagaatgacttccaagttcagtaggtgcttcttgaaaatatagttccccgtgatgcaataataattgattctgttatttcctatt
cttgttcttatgtatgtgacatatgacatgtaactgagacacagttcctatatttaatatttgttgtttgttccacaatcttttcatagatgggattagg
ttg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr1 93270815 93270816 1001465 0 - pAlu1-92835741;1104685457968; RIP_Alu_chr1_093_02 NA;NA NA;NA SINE Alu Ya5 aacggggcatgcatctgatccagatgtgcatcaggtaaaccaagagaggtctgatacaaagctcttcaacctcctaaccctctctaagaagcacagcaga
gcatcagaataaatggatagaaaggtagtttgtaaattaaaattgcaaatgctcaacgataataaatattgctttttatctacatgtcatttaatggcct
taataaaggtaatctatacagattgcctaagagaaatatttaaataacaagttatttataatacttactatttaaccagaaaaatacgttaatcagattc
atgaaggtaaagcacagaacaactctaagttattttataactatgatagtaatacaagctcaaaaatatttaccgaatgtagaattAGAAAAAGGAATCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGGAATCTaattttgaagaaaacactttaagctgtggtgatgggctgctagacactatcaaatgcagt
aaattctaccatccattgttctattagtaagaaatgcctgttatctgaacatttccctttttaatccggtaccatataattatcataggatttcatatat
tatttcattattataggatttcaattctgtgttcatggggcaaatctggagagccatatgaagaccctgggactcatgtagtaatccaaaatttttgaat
ggtgacattacattctattttatttcaatgatattatcacatttcagtgctttgaagactcagtttctagaatatcttatttataatgtacacatggtat
ttgattaccaacatatcctattctct Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr1 161027947 161027948 1001466 0 - pAlu1-159457341;1104685472339; RIP_Alu_chr1_159_01 NA;NA NA;NA SINE Alu Ya5 agttctctttcaagacttaagctgattccaggcaaatatgttaatagttaaaacccaaaaagagcctggaaccatcagtaatctattagcaccaacaaca
aagcatcaaaaatatttatttgtcctcacatgagaacagtaggcatttaatatacaattgcacatgtcacaatatatgtaaaagaaacagacaaaatcaa
ttctgacttactcagtaccttccacataagaagcaccaatcaacggttaaagtcacttgagagggtatgctaaaaagttgccaaatgcagacacctacca
agctagcttagttaatatgcatgtggttaaataattgaaagtggatcaatcttaaatgtttaacatgtcctctgtcttaatcatttAAAAATGCCAAATG
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCCGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAA
AAAAAAAAATGCCAAATGcaactagtagaaaaatggtttgattggcttcatcctccacacatttttcacagaagtgcaaatgacaggtaaaacaagcaac
agaagaggctgagagactaaacgagcaaccctggaattattatgagctggttattctgcaccccaaccatgccttcataggaaaagattaattttctctg
ggtttctgaagagtatgttagctctctagcactgagctaaatgaaacgggattgttttctctccaccgtcctaatgttcatgggtgttcaaatttgtagg
caaaaggcttgtacagacaaaacacctggagtataagacatgatcacgtggtcaggagcaaaatattgggcactgacgataaatacgaacagtaggcaaa
gatg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:HSD17B7:NM:016371:1/9
0 chr1 176664234 176664235 1001467 0 - pAlu1-174978468;1104685261669; RIP_Alu_chr1_175_01 NA;NA NA;NA SINE Alu Yc1 agtaagtagtctatcatactttcttctccaaaggcaggcagactgcctgtaactggtttggctggggcaagtgtgtagttttgattagaattttgtaata
tcttaaactgggcctggtgccacagctcatgcctataatcccagcactttaggaggctaaggcaggaggattacttgagcccaggagttcaaggttacag
tgagctatgatggcaccactgcacgctagcctgagcaacagagcaagaccttgtctcttaaaaatatatatatattcaatatatatgtagaatatatata
tagagagaacatcaataagttctgaattaagatcttttatttaaagctatcacagatgaactctaaatggatcatagacttatatataaAAGCTAAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGCTAAAATCataaaacttctaaaagaaaacataagtgaaaatctcttgggacataaaaaattcctctgcaaacattgcttatcaggatgtaaaatggc
acagcctctttggaaaagtttggtagtttcttacaaacctaaacatgtacataccatagaacccagcaattatactcttgggcatttaccccatagaagg
gaaaacacgttcacaaaaacctgtatctaactgttcacagcagctttattcatattaatgatagcaaaaactggaaacaacccaaacgtctttcaatggc
tgaatggttaaacaaaccgtagtacatccatacaatgaaatactactcagcaaccgaagaaacaaactactgatacatgtaacaatttggatggacctca
Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:RASAL2:NM:170692:5/18
0 chr1 189847405 189847406 1001468 0 + pAlu1-188047238;1104685258146; RIP_Alu_chr1_188_01 NA;NA NA;NA SINE Alu Ya5 gcagataggctagaggcatgttttgctgtacaaaagatgttttaagataaatatccagtaataatagtagttatcttctataattaatgtttaaatatgg
taataatattttcaccttatagaaataaaaatttttctattatttacaaactgtaaacaagtgacttctattttgaatatttactagttcatacattttg
tacttcttccttgtatttatataaaatttatagtgtcagatataatgaaaaatacaattgcaaattgttagagaaaagtatagcattttaaagattaaaa
attatatataaaatcatgtagaagttttataactctttgcttatgtaaaatttactggaatcattctaatattctctagaataaattTAAAATAAAAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATAAAA
AATAAAATAAAATAAAATAAAAGTAaaatttatgctaaataattaactatttaatgattaacgtaaaaatggatgaatggttaggttaggttacatatat
cagactcttctccagagtacagtagttcagtttgacttcaatttaccccattttgtgtgaagctcttttccagaatattttgataaagaagaacaagtga
aaattaaataaagcaaacaaacaggaatggaacacatatgtatataacatgtatgtctgtatgtatcattatatttatgtttctatgcatatatgcaaat
gtgtgtatgtacttgtgtgtgtgtgtgtataagtatttacttctccaaattcagtgagaaacactaatctatcaatactgaaaaactagtgaatctcaag
catgataaaaaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr1 206758116 206758117 1001469 0 - pAlu1-205334897;1104685478513; RIP_Alu_chr1_205_01 NA;NA NA;NA SINE Alu Ya4 ttgagggtatgaaaatccaatctgtctggagtggtgtggggagtttatacactatggatctctttatataattgggagcaatgtggcctggatggctaga
gtgatgggtaagagcaccttccccaactcaggactggcagcaggaaagtaaaaaccctgatgagctttcatctttgtcccctctaaggcaaacaaaatgg
aaaactcatgccctgtgtatttcaaattctcaacctgatacatcaaccatagttatagatattagttatagcaataaccctgctggttccacagaattaa
gaaagtcagcagaaaacttctgcagttccttaagagaggcaaggtagaatttgccttagcagaaaaactaaatcagacttgcaaataaAAGTAAAATCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGCGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAGTAAAATCTGtaagaccacattttttaaaacatttgtttattcattcattcattcatttatttacccattgacatagtttggctgtgccccca
cccaaatctcatcttgacttttactcccataattcccacatgttgtaggagggacctggtgggagataatttgaatcatgggggtggtttcccacatact
gttcttgtggtagtgaataagtctcacaagatctgatggttttatcaggggtttccactttggcatcttcctcattttctcttgcagccaccatgtaaga
agtgcctttcacttcctgccatgattctaaggcctccccagccatgtggaactgtatgtccaattaaacctatttttcttcccagtctcaggtatgtctt
tatca Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr1 47314823 47315119 1001470 0 + pAlu1-46743171; RIP_Alu_chr1_047_01 NA NA SINE Alu Y ttcttctcacttttcttcatagttcatctaattaaagttttgtcaattttgttaatcttctcaaagaaataactttttgtttgttaatttttttctattg
tttttcctgcttttattttatttacctcagctctaatctttatcatttccttccttcagtagctttgggtttcatttgcccttctttttccagttcatta
aagtgtacagttaggttattgatttaaggaatttattttttaatgaagacatttaagctataaaaatctcattaagcactgcttttgctgaatcccataa
cattgggtaagttgttttcattttcatttgcctcaaaatattttctaatgtcttttatgatttattccttgtccctttggttgtttAAGAATGTCTTGTT
GGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGAGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGACCTTGCAGTGAGCCGAGATCGCGCCCCTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAGA
ATGTCTTGTTtaatattcatgttttgtgaattttcccgttttacttctgatattgatttctagttttattctatggagaggtatttttgtatgatttcaa
tctttttaaatttattgagactttttttgtgacttaccatatgatctatgctaaagaatgacccatgtgtacttgagaagaacatgtaatctgctgttgt
taggtggagcttttagaacatgtctgtttggcataattatagtgttgttcaagttctctatttccttattaattttttgtatcattgttctgtccattat
tgaaagggatgtagtgaattctccaattataattttagaactgtctatttctcccttcaatgctgtcagcttttgcctcatatactgtggggttct UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CYP4Z1:NM:178134:2/12
0 chr1 80071693 80071694 1001471 0 - pAlu1-79690157;1104685761267; RIP_Alu_chr1_080_02 NA;NA NA;NA SINE Alu Yb9 gaaagtgaggtatagaaacagccagattggttacagcttggcgtttgccttatttgaacataatttgaacagttggccactttgattggcccaaactctg
tgatcagcacaagagtagctacagcctgcttacatgtccatttaggttatagttcatgatctacagagaaacctttaggtcaaacttaaaatatgtaaga
aggcagcttcagactaaacaatttaacagcttcaaagccataacttttggaattatattttctactagatagaaatctaaaaattaacatgcaacttcac
aatatctggcttctaatctattagataagcagcaaaaccaagcacaggtacattctcctagagaattaaacaatcattccatgtgcttataaAACAATGC
GGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAGAAAATTAGCCGGGCGC
GGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT
GCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAACAATGCatcagtatgaaa
tttaaagtatatgccattcctttttgcttatttctaagaattgtataattttttatgaaataaagaataacagtaaaaaagtagacaccccactattaag
aacaatggttgaaacagacattatttaataatgttttaggggaatgtgattcacttctggaaaaactataacagaactccagatggtggagatagaataa
cacgaaaaatattattaattgcagaaagaggcaaaattccttgaaatttatgcataaatcctgatactagaaaatattcattcatatactaacaggagta
tatatagaaagaataaaagttgctaaatgagaccaggacagtgattatcattagctacatggggctgagtattcctaggg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr20 53195258 53195259 1001472 0 + pAlu20-54400272;1104685525155; RIP_Alu_chr20_053_02 NA;NA NA;NA SINE Alu Ya5 acctttctcattgatcttcaactaggtttacttgcccccttatttgcctattttctgttcccaaatctgtcagttcaaggcaaaaccatgacctcaccct
aacaattgcattctgggcatgttagttgtataatcacattgccctgtcacgctggcatctttaatcattttaaaggtagtcttgacttggccatattctt
gtttaactactttaagcaaattaattagctttgtggggcccccaatgccattaattcatggtctataaaacctcagacctaattgaactttttaatattg
tgtctttactacctgatataagtgtcttttaaattattagaattcctacagttaatgccttattaaatagctacatatatatggaagtatGAAAAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAAATTTCcaagattgcaaagtaatcaaaacccagattaaatcaaggatgattttatatctgttttattatatgtttaaaaattaccaaga
agtttgagtatgtaatgagaagtagtaggaatgcctcatatttctagctggcaaagaatacatgtggtgttaggtatctgagagtttatcagttaatttc
cattaactaaagtatatgaacaatgaaatactatcttaaagctacaataaaatgtcatttcaaaacttgtaagataactgaaatcaaagggacagataat
gacaagtgttggcaaagatgtggagaaattggtatcctaatacacagctggtgggaatgcaaagtggtatgtcactttggaaaacaatctggtagttctc
agccatt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr21 31706107 31706108 1001473 0 - pAlu21-31704668;1104685580334; RIP_Alu_chr21_031_02 NA;NA NA;NA SINE Alu Yb7 tctcatcatctaccctctttgcaccccgccatcctttcaagtcttcgttgtctatcgttccacactctacagccatgagtacacattatttagctccgac
ttagaagtgagcacttgcaatacttgtctttctgtgtctgacttaagataacggcgtccagttccatctaggttgctgcagaagacatgatttcattcat
ttgcacaactgaatactattccattgtgtatatatgtcacatttcctttatccagtcatctgttgatagacaccgaggtggattctgtatctttgctact
gtgaatcctgctgcaataaatataaaatgcaggtgtctttctgatataacgatttcttttcctttgggtagccgtcttgtttctttAAAAGAGCTGACGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCTCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAGAGCTGACGAaatgcactttctagtgctgtccgattgcccattacatacgttcttacacttgatacccagcagtcggcaaaccatagcccgcctgca
ggccagatcccgcctgtcatctgtttttgtaaataacatttattggggctgggcatggtagctcatgcctgtaatcccagccctttgggaggccaagacg
gatggatcacttgaggccaggagtttgagactagcctagccaacatggtgaaacctcatctctattaaaaatacaaaaattagctgggcatggtggcagg
cacctgtaatcccagctattgaggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatggcgccattgcactcca Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:TIAM1:NM:003253:2/29
0 chr21 43258980 43258981 1001474 0 + pAlu21-43280486; RIP_Alu_chr21_043_01 NA NA SINE Alu Yb7 nnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaattacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttg
ggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaacctgggcaacatgatgaaatcgtgtctctacaaaaaaatacaaaaattagctg
ggcatggtggcacacatctgcagtcccagctactcttgaggctaaggtgggagggtcacctgaatgcagggaggatgaggctgcagtgagcagagatcct
gccactgcactgcagtctgggcaacaaagtgagaccctgtctcaaaaaagaaaaaaaaatctaatttcaattaaaataaaattaaaAAGAAGGCCAGTTT
TGCCGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTTGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGGCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGAAGGCCAGTTTcgatggctcatgcctgtaatcccagcactttgggaagctgaggcaggtggattatttgaggtcaggagttcaagaccag
cctggtcaacatggtgaaaccccatctctacaaaaaatgcaaaaattagcccattggtagtggcatatgcctgtaatcccaggtactcgggaggctgagg
caggagaatcatttgagcctgggaggcagaggttgcagtgagctgagatnnnnnnnnnnnnnnnnnnnngtttcaactgttcattgacctcattgagaaa
ttacatatttgggctgggcgcagtggctcatgcctgtaatccctacattttgggaggccaaggtaggaggatcccctgaacccaggagttcaagaccaac
ctgggca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 202339706 202339707 1001475 0 + pAlu2-202595483;1104685654788; RIP_Alu_chr2_202_02 NA;NA NA;NA SINE Alu Ya5 cagaaatagttcattaagaacccctaggctgggcgtggtggctcatccctgtaatcccagaactttgggaggtcgaggcgggtggatcacctgaggtcag
gagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaataccaaaaaaattagctgggcatggtggtgagcacctgtaatcccagct
actcgggaggctgaggcaggaaaattgcttgaacctgggaggcagaggttgtggtgagctgagattgcaccattgcattccagcctgggcgacaagagca
aaactcagtttcaaaaaaaataaaataaaaaaaagcaaagacttggaaccaacctacatgtccaacaaggatagactggattaagaaAATGTGGCACATA
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATGTGGCACATAtacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaactggaaaccat
cgttctcagcaaactatcgcaaggagaaaaaaacaaacaccgcatgttctcactcataggtgggaattgaaaaatgagaacacatggacacagtaagggg
aacatcacacactggggcctgttgtggggtggagggagcggggagggatagcattaggagatatacctaatgctaaatgatgagttaatgggtgcagcat
accaacatggcacatgtatacataagtaacaaacctacacgttgtgcacatgtaccctaaaacttaaagcataataataataaaatttaaaaaaaaaaga
aagaaaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:ALS2:NM:020919:3/34
0 chr2 64953551 64953552 1001476 0 - pAlu2-65057746;1104685777294; RIP_Alu_chr2_065_02 NA;NA NA;NA SINE Alu Yb7 gcttttagtttgtttatgtgggttgtacctctcaatagttaccagtttgtagattaaaactgaaccggcctggccaacatggggaaaccccatctctact
aaaaattttaaaaattagccgccctgtggtcccagctactactcgggaggccgaggcaggaaaatggcttgaatctgggaggcagaggttgcacagagcc
aaaatcgcgccactgcactccagcctgggtgacagagcgagactctctgtctctcaaaacaaaactggccaggcgcggtggctcaagcctgtaatcccag
cactttgggaggccgaggcgggcagatcaggagtttgagaccaacctggccaatatggtgaaaacccgtctctactaaaaatataaaAATTAGCCAGGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAATTAGCCAGGTGtagtgtcgcatgcctgtagtcccagctacttgcgtggctgaggcagaagaatcacttgaacttgggaggcggaggttgcagt
gagccgggatcgggccactgcactccagcctgggcaacagagcaagactccgtctcaaaaataaataaataaaataaaataaaataaactgaagcagtca
cggtggcccatgcctacaatctcagctacttgggaggctgagacaggaggatgcttgagcccgggagttcgaggtcagcctgggtaacacagcacagacc
cctgtctcaaaaaaaaaaaaaaaagaaacgtttaaaaagtgtaaaataaaatagaaaccgacggccgggtgtggtggttcatgcctatcatcccagcact
ttggg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr2 39168844 39168845 1001477 0 - pAlu2-39273037;1104685771010; RIP_Alu_chr2_039_02 NA;NA NA;NA SINE Alu Ya4b gacaaatactatatgatttcacttctgagatacctagaatagttcaattcatagagacagaaagtagaatggtaggttccagagcctgcagggaggagga
attggggagttattgtttaacaggtgcagagttccaggccgagatgatgaaaaagttctggagatggataatggtgatggttgcacaacaatgtcactga
attatgcatgtagaaatggttaaatggtaaattttgtgttgtgtgtattttaccacagttgaaaaaaaaagtcacttccttcgctccatctcaggcatac
taaagtagaatttctagtggtcgggcccagaatcctgcgtttaaaaaaaaagaaaaaagcttttcagtttattgttatgcatggtttAAGAACCACTGAT
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAACCACTGATatgtgggattatctaatggaaagtggggtaaactggattttgttggtattatctttaaagagaaatttatccgattgatgaat
taaagtataatcttcatctagatttttatgtttaattcagctgttaatatttacacattacttcatgtggtaatgtgaataatgactactaataattatt
tagcattctaccacattttaaagcactttcggctgggtgcagtggcctgtgatcccagcactttgggaagccgaggcaggaggattacttgagcccagga
gttcaagaccagcctgggcaatgtggctaagccccatctctaaaaaaattttaaaaattagctgggcatggtggtacacacctgtagtcccagttacgct
agag Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:SOS1:NM:005633:1/23
0 chr2 31805715 31805716 1001478 0 + pAlu2-31909920;1104685768855; RIP_Alu_chr2_031_01 NA;NA NA;NA SINE Alu Ya5 aatatcttgcatttattcactgatgtttgagatttatttctctgctaatcatttgcttctgttaaaaacacccgactaagaaaacacccatgaaagatct
gcaatccttgacagttcaatgagaacaaatatgtgtttagtctgtctttctgatcaacattttgaaaagtttttcatgtgggaaaagagaaaagagtggt
aagacaaagggtatatgagggcatgacaccaaatatatataattagaaagatggagaaggcacaagaaagagacactagggcaaaagactaattttccct
gttttaaaggtggaagatgatacaaaaagacttatggtatgattccacttatatgaggtacttatagtagtcaaaaccatagagacaaaAAGTAGAATGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTAGAATGGtgattgccaggggttaaggggagaatggaatggggagttagtgtttaatggaaatgctttcagttttgcaagatgaaag
agttctggtgatagatggtggtgatgactgcataacaatatggatgtatttaccaccatacgtatacaagctttaaaatggtgtagtcaattatatgttc
tcagaaccacaattaaaacatctctgtggcccctaatatgatgaaattggtcaccacattaaccaatattttcaactttgcaaagcacaccaagagacat
ttttctggtaatctattaaagcttaacactgattttcaatgaacaccattaaaatccagagctcatcagggtttcaatgattttctagtacaacatgtag
taagcattta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr2 21650333 21650334 1001479 0 + pAlu2-21754538;1104685452461; RIP_Alu_chr2_021_02 NA;NA NA;NA SINE Alu Yd8 actgcattataaacctgaattgaatgagaagtgactaaatgggaagaaatttacctgaaagcaacttgatatcagttttctgctactgagaagaatggaa
gcttaatgatagaaattatatttgactatagaaaaataagttacatttttgcatgtatcagtttgtggttacatttgaatccattatatagtcccagcaa
tttttcttttatggtttcaatttctgatgattttcttttttaatctactagcacttatttgtatgttctacctttgtttctggaaccattcgtcattcaa
ctatttcatcaatagtttttaaaacaatgtgggaaacagtgcaggaaagtcaagaggcagagaagcacttactcactgtagttAAAAGAATAGCATTCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAGAATAGCATTCCTttc
cttagtcctttctttctgtctttgcttgctgaaatatcctcccctttcaacctaatcaaattgtattgagtaagacttcatttagattttaccacttcaa
ttccaatttcctggctactcaagcccacgatgtgatcccttcctctaaactcttaaagtatgtgcagtctctaccttcaagttaagaactgaattataat
agcccatctttgttgtctgctgttttcttcaaaataatttcttttctaattttgtcagttagactctccaattcaagtgagctccctaagatcttctttg
aacacaaggtcttacatttagattcaaagtaacattttgatttagaattaaagttgagtgggtttacataacctgggtgg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr2 642673 642674 1001480 0 + pAlu2-642672;1104685353303; RIP_Alu_chr2_000_01 NA;NA NA;NA SINE Alu Ya5 ctgggccatacctgggcctgtggggccacctatgagtgcttcccttcacttcacccagaccgcagtgcaggaattgccaagaatccgtgagcggccgtgg
tatccgtcagagcatgggctgctcctgtcctcaggagtctcttggcagatccagggcctttgcactcagggtcactttcaggtcacactgggctgggctt
gactctgcagaccaatctggaaaccccttatgtgtgacatcagcttttcttacctgtcaatatggcatatgtttccattaagccatctttacatctttta
aaaaaattttgtaattttattcataaaaatcttgtacatattttagattagtttcttggaaacttacaattttggttgatattgtaaaagACATCTTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGCACATCTTTTAtaaaatgcatttctagctgtctattttgttataaaaacaaattgatgtacattgatctttatatcgagtgatc
tcccccaactctcttgttagtatttatcatctatctatatcttattttggggtttctctgtagaaaatatcatctacgattaagaacacatttttttctt
ctttctttcaaattcttacaacttttgtttgttttgtttatcttactctaggatagtgtttttattttcataagatttcttcttttcttctgagaatgtc
cttattcaacctttattctcaagagttgaattgatggacatggtttctgagcagctggaggcttcctgtctctgttgctggtgagaatttgcctttcacc
tagtcgctgttcctttg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr2 84582267 84582268 1001481 0 + pAlu2-84686466;1104685781634; RIP_Alu_chr2_084_02 NA;NA NA;NA SINE Alu Yg6 gaagggatgttgaattttatcaaatgctttttcagcatcaattgaaatgatcatatggttgtgtcctttcttctgttgatatggtgtatcacattgattc
atttgcatatgttgggtcatccgtacatcccaaggataagtcccacttggttgtaatgaatgatctttctaatgtattgttgaatttagtttgctagtat
tttactgaggatttcttacatcaaaatttatcagcaatattagcctgtagttttctttttttaaaatgggtctttctctggttttggtatcagtgtaata
ctggccttgcagaatgggtttggaagtattccgtcctttcctagtttttggaatagtttgagtaggattgggattagttcttctttaaAAGTTTGGTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAGTTTGGTAAAGgttcagcagtgaagccttcaggtcctgggtttttctttactgggagacttcttattatgactttgatctcattacttgttattg
gtctgttcaggttttggatttctttctggttcaatcttggtaggttgtaagtgtctagaaatttgttcatttttctacattttccaatttattggcatgt
aattggtcatagcagccactaatgatcctttgaatttctgcagtatcagttgtaatgtcacctttttttatttctgatcttacttattgggatcttctct
cttttttcttcattactctggctaaaatttgtcacttttgtttaacttttcaaaaaaccaactttttgtttcattggtcttttctattgtcttcttcgtt
acaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr2 65187307 65187308 1001482 0 + pAlu2-65291512;1104685777384; RIP_Alu_chr2_065_03 NA;NA NA;NA SINE Alu Yd2 cgtttttgtagaagatatacatgattttgtattttgtcctttttgatttactttcaaaaatatgctaaagtgaaaaccacgtcacaatttagattaaaat
tatttacatgtaaacaagacataaaacttattttttttgttttaattgcactgccaaagaagagaggatataaaacttctataagcgattatctttgtga
atattcaactattacgtaggtttacataatgatatgcattacttaaaacattgtttgggttttagcaaattaccatattatacttattgttatacttatt
gtctttaattatatatgaggaaaataattttttaaaaatcccaagtgccagtcagcagcaaaatagaagtcagagaaggaaacaaaAATCTTCTAAACAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGTC
TCTACTAAAAATACGAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
GCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATCTT
CTAAACAAGgtaaatcagaagaggggactgaagcatagaatgaactagacatcctttccagtttgagattttaaaatttttaaaaagatcgctattgtag
aatattatccttaataaatgattgatacctaataccaacaatttgtacttggcagttcagctggctgactttactactattgataaggttccttcttaat
taaaccaaatattcttctttctttttttgagacagagtcttgctctgttgctcaagctaatttttgtacttttagtagagacgggatttagccatgttgg
tcgggctggtctccaactcctgatctcaagtgatccacccgccttggcctcccaaagtgctgggactacaggtgtgagccaccatgcctggcccc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:RAB1A:NM:004161:1/6
0 chr2 63632740 63632741 1001483 0 - pAlu2-63736931;1104685776976; RIP_Alu_chr2_063_01 NA;NA NA;NA SINE Alu Yb7 acagtgtctagctattttttaagttgaattacttctttattactttttaaaatgcagatatcttttaaacacttgttacttagtatgagaataaatcttt
aaaaattggcattttattactgctttctggaatctttaaaattaaataatttttatgcattagagtaggtgtatatatatctctgggaataactggaata
aacaacataaaagagaaagaatagagaaaatttattttttataagtcttcattctgctcagtttaacagtgcccaaatacagagtaaatattgatactag
tgaaataacttttcacaactttttttgggtactataatagaatacttggattttaaatagaatatagaatataaaatattgttttaAAGAAAGCAGGGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAGCAGGGCCaagtgtggtggctcacacctgaaaatccagaaccttaggaagctgaggtaggaagatcacttgagccc
aggagttgagaccagcctgggcaacatagtgagaccctctctcttaaaaaaaaaaaaaaagaaaatgaaagcaaaacagaatattcatatttaggtttat
actaggataagaagatttaagaaggaaagactgtgatggggataggttagaaaaggacaatgacaaatctggcacattataaaaaaatcacccttttcaa
atgggtgccttttatgtaacaaataattcacatacgtgtctttggttttagaaaacaaaagcattatgccagcattttgcttttaacatattttgagtct
tatttgccttaatattat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:C2orf86:NM:015910:1/18
0 chr2 11343827 11343828 1001484 0 - pAlu2-11431276;1104685092216; RIP_Alu_chr2_011_01 NA;NA NA;NA SINE Alu Ya5 aaaattgtgaaaaaaatcagaggtctacagatgaaggcagaagactatgatgttgtaaaagttattggaagaggtgcttttggtgaagtgcagttggtaa
gaaagtgttttgttcttattgttctctatgacatcatggttttgtgaagcattatcaatagcagctgagtagatctaatttctatgcccacccatgccag
aaggtggctttgtgatcttggtcagtgtcctcatctataaaaggaagcctttgttgtctactctgggtctcttccagctctgaaacacattgtagaaaat
aaggccaatatagcttcacatgtgatctgcctagcagttactattccaccagaactgttgtatttttatttagaatgttcagattAAAAACATCTGCTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACATCTGCTTAaggaactgagatttatttagatgtataagaaacctaacagataaattttaataactgaaattaaatctgaa
atttattttcgcaggccatactggtaccaattggaattataagaaatgttgacaataactattacctttatattattggctttggaactcttcctaatct
cgtattcctgttttcatcacctgagtatatgaaactcctctattattgtccttatagttaaattagagtcaaattctcttcttcacactacagcgtttac
ccctcttgatggagcactaagaaaagtagtgatcattataagccagcatggattttgttaagaacaagtcatgatagacttttttttcctttcattgctt
ctttctttgggttt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:ROCK2:NM:004850:3/33
0 chr2 181970446 181970447 1001485 0 + pAlu2-182226223;1104685649812; RIP_Alu_chr2_182_03 NA;NA NA;NA SINE Alu Yc1 tacattgagcgtataacttgatataaacaacaacaaatattattttgtctgacaaagtctaggttctcaggctgaaacagggagcaaggcacacagatga
ctcttttcatggggagtacattatggcggggaagacctagaagcaataaataaacaaacaattaagaaaaaaatattccagaaagacatgatatggaaat
aagagttggctgggcaactactttcctggaagatcttttacaagtctactctctgaggaagctagaagagcataattctcatcaagaggtagcaaatccc
tatcatgcctccttttgcctgctggaactttagagggagaaagaggaacaggcatgactgaagacaataagtaaaagagccaacAAGAAGGAATACAGAG
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAG
GAATACAGAGccaaacgtggccagatgaacatgtgcccacgggaatatgtgggcatactgagtggccagcgccaccacagaggctctaagcctatcaagc
taaagtcacgtacctcaagccctcttctttacagatggcatctaaagaatgacaagactcacccaattcatatttagagattttgaaccagagctggaag
ttagacttcctggtgtatttcatttacatatctaccaagaattgccttcatctgagttacttgcaatgtgggcactaataaatatgattactgagcaaga
atcaaggaatgataccatggggtttacagtacccacaaaattagatatccactaaatgtactatgtggcagataatagatcagtgtgtcagtac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr2 178026976 178026977 1001486 0 - pAlu2-178282738;1104685648842; RIP_Alu_chr2_178_01 NA;NA NA;NA SINE Alu Yb7 ctggagatgaaaaatataatgtctgagattaaaaatatatttaatgggattaagagcagaaaagacatagcaaaataaaacagtagtgaacttcaagaca
tagcaacaggaactaaaagaaaaaaatgagaagagtagcagtgagctgtggaacttcaaagagcctaataagtgagtaaatagagtccctaaaggtcagc
ggggaggggggtttattggatagttgaagaaataatggacaaagtttttcaaaatttgatgaaaactataaagccacaaatcaaaaaagcttaacgaatc
ctcaacaaaagaaacacagagaaaaactacaccaaggtccatgacaatcaaattgctcaaaccagtgataacaagaaaatcttaaAAGTAGCCAGAGGGG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGTAGCCAGAGGGGgctgggcacagtggctcacgcctataatcccagcactttgggaggccgaggtgggcggat
cacctgagatcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggctcaagcttgta
atcccagctacttgggaggctgaggtaggagaatcacttgaacccgggaggcagaggttgtggtgaaccactgcactccagcctgctgagcgacagagta
agactctgtctccaaaaaaaaaaaaaaaaaaaaaaattactactgattttcttagacatgataatggtattatagttatgaagaagaacactattcttct
gtctttaggagatggtgctgatgta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:AGPS:NM:003659:8/20
0 chr2 178059713 178059714 1001487 0 - pAlu2-178315479;1104685648848; RIP_Alu_chr2_178_02 NA;NA NA;NA SINE Alu Yb7 gacatcgttatttccaaactaacaattttatttatctcttttagagaataataacacgttatatctaacactgatatgctgattaaaaaacattattttc
ctcctcttcataggctacagcaggaaatgtattttctgagaacgtcttaaaaatcatttacccatctactgaataaaggaggagattatactggactgcc
acttatgagaaagaatcacattaatcttccactaaatcctcctttctagtttctcacaaggcagtgaagtattgaaagaggatacttcctcacatggaca
aagatcggatgagagactttagtagaatccttctaatgctagtataaggttgcttaatttatttccttcagtaagaatagtaataaaaATATACATATAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGAGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATATATATATATACATATAGcccactttgctatttgtgaacagtcatgtatgttctttcccaaaagatatttatcca
aaattacagtttcccatttcaaaagcaacttgaatctgaaaatattgcaaagatggaagtgctataaaatgacagtgaagaattacaagcaaccaattca
ttattcaatcaagaatttggcacaatcataagccatgtaccatctactttaatggatcttaattcccctgctatcaactgaaattccaaatcccaaattg
aacaatgactagttccaaaacctgattttttcaatttttctgcctgaaaacactattacaaaggaaggcagcaaatactgtaccactcttgacatatgag
acttgtatgttctacaaactaatatacaact Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:AGPS:NM:003659:11/20
0 chr2 154460862 154460863 1001488 0 - pAlu2-154716616; RIP_Alu_chr2_154_01 NA NA SINE Alu Ya5 tatgtatatacaatttacatcttcatatatatttaatatttatatattcagattaaatgaaagatatatttattcataatttacatattgatatatacct
attaaatatataaaatacaggagaatgagaacaaatgtaaaaccaactttagagttttaaaataaatcacacaaacaacattatattatagtcagaaaat
taagcaatgtaaagttaaataataaaatggtaatcaaaaaataagtgaaagtagtcaggacttaaagaaaaaagacaaaaggttatcagtctttaaagat
tagcaatataagtggtttttccttatacaattagttttctaaatcgaaagtggcaagttttttttaatttaggaaaaaacatAAAAATATAAAATCATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
TAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATATAatatataaaatcatccttaattccagaaacaactatcctgttcttactcgcagactattatttaaataattatatcatacaaactatttta
tgattatattctctttttacttaattgtgaatttcttgtgtgacaatatctttttttatcattacactgcaagatcactgattaatatcctgttgctatg
gcatgccatcatttacttattttctgaatataaattatcatcaaatatttgtggcaaaaagaagttactgtgaaggtccttgtgcatatatcttctgcca
cagcgtgattgtttccttaggataaaatgcccagaactgggatttctgggtcaagtagcatgagactgttaaaacttgttaaaccatattt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GALNT13:NM:052917:1/13
0 chr3 4180146 4180147 1001489 0 + pAlu3-4197006; RIP_Alu_chr3_004_01 NA NA SINE Alu Ya5 atcaaaaatgtacaaatgtctgatgtaaagtcattgggtgttgaactaagcagcagcctgaaaaaaaaaatcactgtctactgctacacctaggaaatgt
agcctccactcttctcccggtagactgctagggtttccgggtcactgcactttgcctattgaagagaagagaaacaaaaacactccaacaaccaattatc
tctccttgtttttattgtaccaaagcagacttaatctccttgcccctttttaaccttccttttcatgcagatgagagagagagagagacagagagagaga
gaaaggaaggaaggaaggaagggagggagggagggagggagggagggagggagggaggatgggaatttataaagactttataaagatgtAAGAAAATCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAATCTCtccaatgtatctctcaaagacctattacaggatctttcttctatctctttgttgatattctggttttcttgtactgacatcca
ggatactgtccttggacccactttctcagacatttctgtaaaggaacagtcttccagctcctttgtatgagaggaaattgaagcctatgaaaggtaagtg
ccatgctcaaggtctagagtgagtggggcagagttaaaacaacatctgggtttcctaactgccactccctgttctttcaattttaccagtccacatcata
aagggagatcaagatgtattgttaggtttgaacctgtttcttaatttccaacatcagtcttctaatagacagccatcatcttatatttttctatgaatta
ccttgg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 31856403 31856404 1001490 0 + pAlu3-31728001;1104685213628; RIP_Alu_chr3_031_02 NA;NA NA;NA SINE Alu Yb7 gatagaaaaaaagaaaaaaaacttgaggaggctttccaattttaggtaggtggccagagaacgcttcatgagaaggtaacatttgattaaagatgtcaac
gaagtaaaggagtgagccaggctatctgggtaagagcattctacatagaatctcaacagagcacaaaggccctggggtgagagttcacttggtgtgtttg
agcaagatggacagtgtggcagaggtggaagtgagcaaagcatagagcaatatggagttgaggtcaacaggttagggatgggagagactagttcctgaat
tagaaattacagacaacagccaggcaagccagatgcctggtaccacctaaggctcatgcagacacagagaatgacaagcaaattAGAAGAATGGGTTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAGAATGGGTTTCAataagctttctcctcagggtcatagtcaggtattaaattgttatttgcatacaatttacttaggtctacatg
gaatggatcatttcaactggataattttcatcataaaattatattactactgccctgaagatgggcttttcatgatttattctatgctctatttcttctc
acgtctcattgtaatcgacccagaagatactttatgccagtaatgaatcatagaacaaaaggcgagtgcgtgctgaggaattctataaatgatcactctg
gaacatggggacaagggctcctattttatatttaaacatctgtctcctaccagtgggtcaaaccagccatgggatgggaagtccaatgtcattctgagaa
catttcaagaag Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:OSBPL10:NM:017784:4/13
0 chr3 48347331 48347332 1001491 0 + pAlu3-48191559;1104685209522; RIP_Alu_chr3_048_01 NA;NA NA;NA SINE Alu Yb7 tgaacccaagaggcagaggttgcagtaagccgagatcgcgccactgcactctagcttgggagacagagcaaaactgtctttttgtttttcagttgcaaga
tttaatagagtggaaacagagctcccatatgatgggaagagacccaaagggggttgccactccctgcttgaatgcctgggtttatatcccgatcattgtc
cctcccctgtgttctcaggcgatatatgatttgactatttctttacctcctgcttttagcctattttgtattttagtgagccctctttactacctgattg
gtcgggcttgagctgagttacaagcccctgtttaaacgtgggtgcgttcaccttccctagctaggcttacaaattcttagtcagcctAAGAAATCCAGCT
CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAATAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAGAAAAAA
AAAAAAAAAAAAAAAAGAAATCCAGCTagtcctgtctctcagtccccgctctcaacaggaaaacccaagtgctgttggggggattggctgacaactgctc
taactgcttcctgctcaactggggcatagtaggggtcgtgcagttgagatttcctagggaggggtgccttcgatgtcatcaatatcacagcatgggctag
caggccggtccaaggatccctggtagatcttagtcagggactgcatctggggctccatttgaagaacatttgtagttttacagctttgattctggaagag
acaaacttaacaaggaggttaaagatacagggattgaaatgtatggtctgaagttcaggggcatatgggtgtggggctgaaagtggggtttcctttagaa
aaactcctataaga Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr3 19010457 19010458 1001492 0 + pAlu3-18886026;1104685216610; RIP_Alu_chr3_019_01 NA;NA NA;NA SINE Alu Yb7 tattatctcatttaattaacaccacaactgtatgaagtaggtacttttatgcttgagaagactgaggtccgtagaaattaaggtatttgtcttgatgtca
ccagaccagcatatgaaggggtcaagatataatctaggcagtctaactccagatttctccctatgaactcttgttaaggtggcatcaagaagcaacacac
tgttgaatttactctactaatccacaataaatcaacttctgtcagtctctaatatgaaatcaaatgataaatgaatatgtgtcacattggaagtaaagat
tatccagtgatcaatccaactcttaccattgacaagagggaggcccaaagcagatgagttcaaatgtgttagtgcttagtaagcttaaaaccaagGTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCNNNNNNNNNNNNNNNNN
NNNNGTCATtgtaatatatgcaaatgtagtgagtatcccaaactgcacatcacatagcaaacactcaaaaaatgatgtgtgtgcatcttccagggaaatt
tgatacagcgaccaaaaaggaagatttggaagagatgttggggcctgatcatttggtgatgaaaagcaaatgaaaaatactgcctggaggccaggttcag
tggcttatgcctgtaattccagcactttggaaggccaaagtgggtggatcacctgagcttaggagttcaagactagcctgggcaacatggtgaaaccccg
tctctactaaaaatgcaaaaaattagccaggtgtgatggagtgcacctgtggtcccagctacttgagaggctaagatgggaggattgcttgagcctggaa
ggtg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr3 87603172 87603173 1001493 0 + pAlu3-87400471;1104685028053; RIP_Alu_chr3_087_01 NA;NA NA;NA SINE Alu Ya5a2 caaaataacttggaagaataaaatgtggcataaaatcttaacatagctgagagttttaagttattctgtagaggagggtgaggaaaaaaaacagttttgg
aaaattaccataaaacattgaaagtaaaataaggaatgtttttgatatagcttcaaggaataatcacatgtttttacttacagtaagatttcataaattc
ttatttcattacaatactgtattttattaaaaaaactgaacaccacacaaatatctgtaacttaaaaaatattcgttgttacccgagctttagtactata
atatttagcaaaaaaaaaaaaatgactatagctgatgactttatgtcattagctacccctgaagttgctgaaaaaatgaagtgttAAGAGATAAAGTTGG
TTGGGAAGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCT
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAGATAAAGTTGGaatttggtagaagactcca
ggaataaaggtattttttttgtggcggggaggggatatctgtcagatctctatagtgcagagaattttacagaggtgacctgacactcttttccatcaaa
gcaatgagtggcaaactctctcagctggatatctggactttgtgagtctttatcttcaccaatataaaatctatcatgtagtcaaattatgatattattt
taatattttagtgccagaagactgatgcatatttacaaactaagtcagctggctgaattacacaacagaattttataattttaaaagaaagaaaggaaaa
ggcactataggcaataaaacactatgaagttgtggtcaaaataattaagtcacttgtactgtgttc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr3 77068574 77068575 1001494 0 + pAlu3-76791503; RIP_Alu_chr3_077_01 NA NA SINE Alu Yc1 ttagaaaaacaatgcatgcatcttaaaataaagaaaagccaataaaannnnnnnnnnnnnnnnnnnnatgttaattccaagtgaaattgaaaataatttt
aaatgtgtaaagattttgtatgcagcaacttcaaggcagtaaatgaaaatgtaagggtggacagcgttgctcctccaagtcacggaaggtgtgacctgaa
ggatttatgaggtattaaaagcaaggactgataaattaattatttgtgggagccaacacattacaattaccactaacatgttaaccttagtagggtttct
ttataaatacacatgtctactatatataaatgtttccagatatgtaattgggatcattcttataacactgattgagaaactggttctAAGAATTCATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCTGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGAAAAGA
AAAAAAAAAGAATTCATTTTattcacaacagcagtggatatttttagactacagagtaattgcattttgagtctttaactcaattttactttattacatt
ctgcctttaaccttagttcctttttttaattgaaacacctagttaaatatatacattcttatgaagacatttgtttctgaactggttgttggaaacatta
ttcctagaaaattacttaggatgtcacagagtattaaaatgaagactagcgtctaaattaactagcacattttatgtagtgttcattgattctacaaact
ggtactcattattgacctacctacccctccttatcctcaacctactcacattaattgagtctccattttcttgcttgtacttagtaaacaccacaagtga
aggtggg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 170957016 170957017 1001495 0 + pAlu3-170876349;1104685600305; RIP_Alu_chr3_170_01 NA;NA NA;NA SINE Alu Yb7 ccaaataatgacctaaattttaattttgtaactgaaaaacattagaaagcactattaattacagatatctacttagcatttgcctctgtgctggtgaaat
catagttacaattagctggtctgttctctgccccaacagcactccatcatgcattcaacaaacaattattgagcacctgttatgtactaggcacctggga
tctgtcaatgaactcaatgacttgggttctgcccctatccttataacccagtgaagaacacagataagcaaataatttattgcaaattaggaaaacatgt
tataaaggtaatcaacagaagatcataagaggaggggtaacctgcttcaaaagggggtcagagaggattctgaggaggtgatatctaagttAAGACTTGA
GGCCGGGCGCGTTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAGAA
AAAAAAAAGACTTGAGggaggagagaaggggccaggaactacaagtgcaatttaagcagagaacccaggatgagagtttggtacaaaggaggctggtgtg
gctgaagcacagtgcaagaaaagaagagggtgtattagtttgttttcacactgctggtaaagacatacccgagactgggaagaaaaagggattttattgg
acttacagttccacctggctgtggatgactcagaatcatggtgggaggcaaaagtcacttcttacatggcggcagcaagagaaaatgagagaagaagcaa
aagtggaaacccctgataaacccatcagatctcgtgagacttattcactatcacgagaatagcatgggaaagactggcccacatgattcaattacctccc
cctgggt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr3 142801299 142801300 1001496 0 - pAlu3-142600205;1104685606879; RIP_Alu_chr3_142_01 NA;NA NA;NA SINE Alu Yb7 tgtttttagtcttttcacactgcagctttgggaaaacttcattccctgatttgtgtttgtcttggccttcctggtgtgcagttactgctgtagaaaaata
ttaatagcttcatttcatataaacgtaagtaacttccacacacttatgtagaggactaaaaatgtatctggtatttaagtaatctgaaacagttctgcaa
gtgactgtgttttgtattactgtgaagatataaaaatgtagttaattacaatttaaagagtgttctacataacttaatttctacattccctcccttactc
ttcgagggtttcctttcaataagcaatttttccatgctcttaatgtattcctttttagtaggaatccagaagtattagactgaatGAAAACGCACTTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACGCACTTGCCatctctggctatggttcacaaattgaaatgcctcctttatcacataaggaggtcat
gtatatctgtggcaacagggagtttccttattcactctttatttgctgctgtttaagttgacaacctcccttcccaataaaaattcacttatacctcctg
tctttgtagttctggtattcactttactatgtaatagaagtagcatgttgctgccagaatacaacattgcttttggcaaattaaagtgcatgtcattttt
taatacactagaaaggggaaacaaattaaagtacacaagtctaaatttaaaacttttgtacttttctatgcagatctgtgcacgtgagagggtgtcctgt
ttgtctagtgattgttagagttggaacac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:RASA2:NM:006506:19/24
0 chr3 125889213 125889214 1001497 0 - pAlu3-125688109; RIP_Alu_chr3_125_01 NA NA SINE Alu Ya5 ggattacaggtatgagccaccacacacagcctcctctgctcatttctaaatgagcataagacaagctgtaattttaaaaaatgtaaatgcaacataatcc
caagcagcgatagacttgtctctttcaactagttccttactcccaagtattttcgttatcatttagttctaagtgtttttcttcaactatgatttttttc
ttttacccagttgtaatgagtatgtttttacatttccaaagatgtgagatttttaaaaaggatatttttgttgatgatttctaacttaattgcattgtgc
ttggaggacttggtctgtatgatactgattccttgttttttgttgaggtttgctttgtaagtagcacacatggtcaatttttgtAAAAAAATTCCATATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAATTCCATATGGgttttccaaaaaatgtataatcattaatttgggggtacaggtctctatatgtgtccatgtgtcaagtacattgattgttt
tatggatatttctagtccaaatatccccctttacccctcaatattttggttagagaacatttagtgtgctgtcaaaaataaaaaggatgaaaatatggct
tttaacagaataatgaaagcatctatcacccatctcacaagatagttggttgcaaaggaccaaaatgggggtgcgttgctgtgtatgcactggtctccag
ctgctcctggcagcctaggagtcagttaggaagggactggaggtggggggccgaggaggatgcagtggtggagttacagcttcttctttataaatcacat
ttcc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KALRN:NM:007064:18/27
0 chr3 121908165 121908166 1001498 0 - pAlu3-121706690;1104685103313; RIP_Alu_chr3_121_01 NA;NA NA;NA SINE Alu Yb7 aggtgatatcctaaattctagtgggcatcaaagtttttcctcttttgtctatatcttgctgtaataattaattccctgattttcctttctatctaggatt
ttaattgattctcttcagttgtattttattgtatttctgggcctcgttacattttgttatttttctcaatctatcaaaatccgtgcatgtactttctact
atccatacttctttactatttaatgtctcacccactctcttatagtggcatatttcttttgctctaataactaaatctcttacaggtaggaagcttacat
aactaatcattattcaaagaactagaaaattagacatttgaatagattagtctcagatgatctacaggacactattttgtcagctaAAGAATAGCAATTG
GGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGC
GCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCA
GTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGCAATTGtatcaaatcagtactattttagtagatt
ttcattacctaatattacttttagtgagtataagtaatatatgtatgtactggtatctatggcagtactgtgtacagtgaagaaacaacataactttttg
agtgaataatttcatatgtacttgaagtagttttgattctcttgattaataaagtggttctacaggtaggaacaggcatggagtaggcactcaggaagtg
ttgaatgaagtaaagatctgctaaaagtttaatgggatttcgtcagcccttgtaaaataaagagttataaaactgacagagaaaggtttatggctattta
taaatatttgtagagaaaattttaaaataattgtctctgagttgttagtcatactaga Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:RABL3:NM:173825:3/8
0 chr3 112470169 112470170 1001499 0 + pAlu3-112268707; RIP_Alu_chr3_112_01 NA NA SINE Alu Yc1 agtgttttagtaccatccgcttggtattgccctcatgatagtgagtgagttctcatgagatctggttgtttaaaagtgtgtggcacttcccctgtctcgc
ttgctcctgctgccaccatgtgaaactcctgcatcccccttcgccttatgccatgattgtaagctttctgaggccacaccaggagcagatgccaccatta
tacttcctgtactgcttgtagaaccttgagccgattaaacctcttttcttataaattacccagtctcagatatttctttatagcaatgcaagaatggccc
aataaaatcagcaaatatgatgtaagcagagacttaataagcacttatgtattgaagtgtgtcctcttcaaaggcagctgcctcaatgtAAGAAATGTGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCTTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAATGTGGaaaagtcatgtggaagagaaccaatgtgccccagttggcagatctagttatgtaagccatcttggaccatccacc
tagtcatgctgccatgagtgatcttaggtaagatgggctgaagaactgatcagtccagccaaaactggagaattatgagccaacaaatttttgttttaag
tcactaaatttcagaatagtttgttaagcaccaacaaataactgactcacaggtatgaaaactcattgagaacagggcttatgtcccatatgtttagatt
aataacctcctggctatttcagttactctgcagaaatgaaggcagagctacagttacctggcaaagatgggaccacttaacacaaagtcaggcattgtct
atgagggagggata Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 111753720 111753721 1001500 0 + pAlu3-111552258; RIP_Alu_chr3_111_02 NA NA SINE Alu Ya5 tttaaagcctagttggggatccacaatagacaaaataattaacgaatacaaacaaatgcattaaaaggtacttaataaaatgtccttggaagtaggtggc
aatgccttaatagttgtcaggcccaagggccccttccattcttgtcaaggggagtgctagccttctctccttgcatagcacacaaaaaaatgtccttggg
aagagataattctcaccaagaaaagagagagtattttctatatttgaggaatatccaatactattaaattctttataactaagtcaaattggaaaacatg
tagttattggcaggaagaaatgcttaaggatagagtcatttgatgactcttgaaagaaacagaatggcaaaggaaaaaaaggacctattAAAATTATTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATTATTTAaatttccaaaattcaatgacaatacaaatgtttagacaagttacacctgtgcttgattttaggttca
tattttatatgtcaaacaggtgtaataatgtcttgttaaatgtagcaaagttaataataaattgcgttcactgtgaacaaataaataggcagtgacttta
ataactactataaaaatagcttaggaagtagtgggttggaaaaaaaattataagttaatacagtattagagtaacattaacagaatctttcagagtgtga
gaaaatgtgttcacaggtggttatcagtggttaagctaatcaagaaagaaactcagtagaacttttagtccaaggacattcccttatcaagatttttatt
taggagctctcacataagtcat Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 101893249 101893250 1001501 0 - pAlu3-101691772; RIP_Alu_chr3_101_01 NA NA SINE Alu Yg6 aaagactttcctcctcaatgacattttaccatagccagaaacagccaacatgacaccagcttcacactgtagttaccgttcttagcaacttaatgggata
gtcatcaaaattgcagtttcttcatgaaatacagaatagctcatcctgatattgaacaaagatgttatctactgtgaaagatatgcacaagcaagttcct
tgcactcagagtactgatgttctagttgaggagatgagaagagtatgcataaaaagttaattttatagggtaaaaagaagagaggacaaaaacatttaca
aaacaatatttttatttgataatgagtcatatttattcacttagttgatagttaataaggctagaatgaaagtcatcaccacaaAAGAATAAAGCCCATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAAAATACAAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAGAATAAAGCCCATCaataaataaactatgtagattgtatcaatgtcattttgataatgtattaaagtaacataagatatgatcatg
ggaacagttgagtaaagtgtacatgggaattctccatactatttgcaacatcttatggatctaaaattgtttcaaaataatttatgtttaaaaagggatg
acataagaatggggaagggtggagccaagatggccgaataggaacagctccagtctacagctcccagcctgagtgatgcagaagatgggtgatttctgca
tttccaactgaggtaccgggttcatctcactggggagtgccagacagtgggtgcaagacagtgggtacagagcaccatgtgtgagctgaagcagggcgag
gcattgcctcac Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GPR128:NM:032787:15/16
0 chr3 167845008 167845009 1001502 0 + pAlu3-167764341; RIP_Alu_chr3_167_02 NA NA SINE Alu Ya5 atgttgctaatataaataaattttcaggaagttgaaataaatgaagttattgcaactttattttttgagcaatacttttctgaaatagtatccatgttaa
agcaaagtgttgattacaataatcatgttaatatcaataatcaattagtaaatccatgctaatgtggatactaagttgtttgactgtagatgcttttcat
tttcatgatccagtggtttagatgttgaattacattcccagcaataattcagtaggagatatatgtcccagccttactgtacctcagactgtttcaactt
tttgttagtgaccttggcttgcatagcagtctccatgtggatgttgagcatggtttatttggttggtattcagcattttctactttcctttAAAAAGGGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATTAAA
ATTAAAAAAATAAATAAATAAAAAATAAATAAAAAAAAGGGGGgagagaggcactacatttcacatgagactctacaatgactatatctttctctctctc
ttcacttgtctctgaggcctgagtcacagtcagctcctgttcattggttaaggtcactggaaattgaactgtaggtgaccactctacatgtttcaccaga
tttatgtcatagaatgagctactctattagcatcctactttcagaatattcagatgatgattgacgtttccaaatgctctcctccctctcccacatgcat
acagaaaaacaaattcagaaatcacatattaagaattaactcagcatttattgttctggtggcaacacatgatacgtgcgaggtcgggtcggggagctag
agattcagtaattctatataaccaggcttcctat Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 104936087 104936088 1001503 0 - pAlu3-104734610;1104685641326; RIP_Alu_chr3_104_01 NA;NA NA;NA SINE Alu Ya3 ctgccactcactgcattcttttctacttatctgacctttggcatggtttctttcttgttccttagtaaaatttccaatattttctattacttaagaatac
atgttgttgggaaaaattttccaagttccaatattatcagttatcaacaagtggacatttttaaatgtcaccatcttatttttaaataaatacattttct
ttggaaagacatacaatccatttgtcacaattaagaaattaataaaaattattttttaaaaattactaactaaaaattaaccttaattctagaaactaag
ctatcttaagagttcaattatagtaaactaagaaatagttatcctcaatgatgggaattttatacttcccttaatcaaatgtttAAAAAGAATTTTACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACGAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTTTACTCaaatttcaatcatttgactcctaaattaataagactataaaattctaaagttgaaagagatcttcaaaagaagagactatataaatca
ttaattgaaggggttgaaatttgagactcaatgaagaaaaaagatttttcaagactccgaatctagtgaatggccagagctgaaacacaaaaatagttca
tcaaacttttcattttaaattttaattagtcatcacaccactctcctctaaggtagtaccaaataatagagtgcaatagtctgttataaacaccaacatc
agttgtttcagtcaactggtggattcacttactctttttgtaaattgtattacagcataaaaataaccagtaatgtgcaggattcttaagggaatg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr3 101659957 101659958 1001504 0 + pAlu3-101458495;1104685642042; RIP_Alu_chr3_101_02 NA;NA NA;NA SINE Alu Ya5 tctcccttgacaagggattatgaggtttacaattcaagatgagatttgggtggggacacaggcaaaccatatcattccatccctggcccctcccagatct
catctcctcacatttcaaaacacaattatgctttcccagtagtcaaagtcttaattcattccagcattaaacccaaaagtccaagtccaaagtttcatct
gagacaaggtgagtcccttctacctatgagctggtaaaatcaaaagcaagttagttatttccaagacacagtgggggtacaggcattgggtaaatgctcc
cattccaaatgggagaaattggccaaaacaaaggggctacaggtcccatacaagtccaaaattcagtggggcagtcattaaatctAAAAACCCCAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AACCCCAAAACAatctcctttgactccatgtcttacattcagggcacactgatgcaaagggtaggctcccatggccttgggcagctccatccctgtggct
ttgtagcccctctgcccagccctccatataccagctgctttcatggctagtgttgagtatctgcagcttttccaggtgcacagtgcaagctgtcagtgta
tctaccattctggggtctggaggatggtaggccctcttctcacagctccactaggcagtgccccagtagggattctctgtgggggctccaaccccacatt
tcccttctgcactgccctagcagagattctccatgagggctctgtccctgcagcacacctctgcctgcacatccaggtgtttccatacatcttctga Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr3 189381293 189381294 1001505 0 + pAlu3-189300625;1104685595629; RIP_Alu_chr3_189_02 NA;NA NA;NA SINE Alu Yj ccctgatggcccaagggcccttcccctttgtttctgtctggggaatgttctgtctcctctttcttgaacctccttatattccctcaagaagacttaaggc
aaaaacaaacctgaacttactatgtgtggtatttttgtgttataagtgtaggacctagtcatagtaacacatttcaaaaatatggaaccgtataaagaaa
atgagcatcactcataaatcactatttagacacaagcattgtttacgtttctaatattctttctttagtggtgcttttcatgattttatgtgcatttgca
ttttactgactaaatattactatacaaacattttcatatcttgccacttcccctaacaatacagcccaagcagcttctcatggcattAAGAATTGTTTGT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATTGTTTGTacatgtaattttgaatggctgtatgctgtttcatcttaagaatataccataattctaatttttcatc
attataaatagcactgtgacgaacatccttcttaacaaaattctttgtctgcacctatgattattttctaaggtagattattagaatttgaaatgccttg
cacaaaggacagtaactttttcacccttagtttcagagagaacatgttgtctctggagaaacacagaaacatgaaaaagcataaagaagaaaataggcct
ggcacggtggctcatgcctgtaatctcagcacttttggaggccgaggtgggcggatcacgaggtcagggattcgagaccagcctggccaatatggtgaaa
ccccgtctctactaaaaata Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA downstream:FLJ42393:NR:024413
0 chr3 156523370 156523371 1001506 0 - pAlu3-156322276;1104685603528; RIP_Alu_chr3_156_02 NA;NA NA;NA SINE Alu Yb7 agagggtgttagacaccaaatagtcaccttgtcaaggacagttgtgctggatctaatgcagcaaatcccaccaagtctttagaaggctagatgtcagact
tgctgtggacaaatcatcttttcacagatttcaaaaaagagtgccttattagtgtatttaacaaatcagagtaattttaaattgtttttctaattaaaaa
taaatgtttactataggaaaataaagtaccttaaaatatgaagaaaatttaattccacctataaccaagctgaatttatattgtgtttaaccgtatggac
ctactagacaacaaaactcacaatttcatatgatttaacgtactattttggtatctgtctctttttcctatgcgtatacagtgatAAGAATTTGCTTTTC
GGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACT
GCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAATTTGCTTTTCatttaatactatagagagattgtgaat
taaatatttatgtatgaatatattacttactagtttgtgttattcaaagttctcaaaattgtatttaaaattgcttagtcttttttacctgtaatttttt
tagctgctcaacagcaacaaaaaggcaacattaaatcggagtgaccactcttgtgttaagcattaagtataacagaaaattaaaaaattccttgatttca
aggcatttataatctcattgggaaaaggagattagtgttgcctgaatgagtaaaagtgaaacacccacaattccagtataaagtggtcttatattcagtt
acagattctaagtgctacagaagctcagagaagaaagaaatcaagattatctgaaatt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 132938650 132938651 1001507 0 - pAlu4-133112388; RIP_Alu_chr4_133_03 NA NA SINE Alu Ya5 acaggggtaaaaggtcacacacaatactgtagaacaatccaaaatattaatttattcctaaagtttttaaaatattagaataaatacagagcattttgtt
AAAACAATATGGTAAACCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAG
ACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGC
TGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC
AAAAAAAAAAAAAAAAAAAAAAACAATATGGTAAACCTaaatgtaaaaaaaaattaaattgagttaggaatttcaaaaagacatttcatgtgccttttca
actttcaatttcgtatgaaagttgaaaaaacttgaaatcagtaagtgtgcatgtatatgtaaaacaaaattactgcatataaaaacttttttgaggcatc
tagaaaatatttagcagtgtgccataatttagaggcacttaaaaatgctttttagtgatacataaaaaattaattaatgacacagtctatgaaaaacaaa
tagagcagcttgaaataattcacatatttttcatgtaaaacttttaggagaagtccagtgatgtcacgatagctctacgatgttgatttattttgttgct
tttatatgcttattttata Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 26047729 26047730 1001508 0 - pAlu4-26126966;1104685316795; RIP_Alu_chr4_026_01 NA;NA NA;NA SINE Alu Ya5 tcaatgtgaggtccagaaacatgaggtctaacctgacgttagaaatgactactggctctatttatagatgaagatccattacctttaagatgaaaaaaac
gctttaagacaggggtgtcttatctttaggcttccctggaccacactggaagaactgtcttgggccatacacaaaatacattaatgctaatgatagctca
aaaaaaaatttaaaaatcgcaaaaaaaatctcacgttttaagaaagttggcaaatttgcattgggccacattcaaagccatcctggaccgcgggttggac
aagcttgctttaaggggtccatgatcactctccctagctttgtgtaatctagcgcatattcaagtgtaagacttggccaggggaactAAGAATGTTAGCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATGTTAGCAaagaggtcatattttttccccagacttttccttgtatcatctaaatataaatatctgaccaccacaataagaactcag
tcatgaaggtttaacgagcagaagaaaaccagaagccctgatttttgagttgtgtgatgaggaagaataaagggaaggacagccttgcagggaggaaaaa
gttctagaagagaagaaaagctgccagagccagctccaggccactgcaggaataacctagtcacactccttacccctttatatgatgatggtgggagtgt
ttctagatagttgaaatgtaagtaattatgagcatcctgactctgcccagcaccagtagacattatcaaacaggtaaagaagcaagaaattgactgacct
acatgctca Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 43094745 43094746 1001509 0 + pAlu4-43249909; RIP_Alu_chr4_043_01 NA NA SINE Alu Yb7 aagttatatggtcaccatattcatgggaacctacattctctgattcgtacccacatgtccattctcattttttgctaccccttcctctctctctgtgctt
catctacacttgattttattttccttttatttttatgtctgtgacataatccatctattactgagtctctttttccatatattttccttatcatccctcc
tctctttctagttaagcccttttcattctccaaatcttagttctgaagtcagttcctgagtcaaacttttcatgaccctacagacaagatcagaatctgc
tatatgcttatatagtgctcagtagttaccacaatctgcagttatcgtatgtgtgctcctttttggctgatgccttttccttagttGAAATTTAAGCTAC
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTTAAGCTACctgaaaattagggcatatctttctttttctttaaccttccattttaccccaaggc
ctgacacataataacaagcatttaataattttaaatgcatttttttcttatgcagaaaaaggtttgaaccataaataaccatagtaagtgtgacactcag
ataacctgtgaagagatagctttaatctcaatcaaaggatttgtttatctctttcatctcctggaatatatgactcaaaggtcacccttgaatgatggtg
gaaagtgtcggctctgtctagacagggattgttctgcatgtcttctcacaaacgaagacaattaaggatgggtaagaatgatttattccaatctttctta
actatgtgggctgatgaaattgtacgtgttt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 138518456 138518457 1001510 0 + pAlu4-138692211; RIP_Alu_chr4_138_02 NA NA SINE Alu Ye5 tgttggttgagcagaagaatcaactaaactaagtaccttctggtataaaaagattctaaaatgtataattacacaaacataatacaagtttgtttctttt
tcatgtcaatagtaatgggtgataccaccctccatgcacttattcaggaccttaagttaacagaagttctgtgattttttaacacatggctgtaaatggg
tttatcttcattccaaagggtagaaaagcattctgtactctagcagtcaagaatatgctactctcaaatctctgactatggggagtaaaattgactatgg
tctcagctgctgtgctttgaaaatcaacactgcaattatgccacacttcccacaggctgctcccaactggtgactgggcatgtcAAGAATAATGTTACCA
GGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATGGCGT
GAACCCCAGGGGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AATAATGTTACCAaaatgccaagggtttggtctaggtcctgtggctcatcacacataaagccaatcaaaagagacaatgagtattgccacggaagaaggc
tttatttggatgctgtagccaaggagttgagaggtaagtctcaattctatctcccccactgacttaaattaggggttcatatagcagtgaagaaatctaa
cgatatgtggaaaaataggaattagggagaggtaaggaagcggagttggtcaacaggcagcaaatggtcagtgaggcagtcataatggacgaggggtctg
gtgtttcattgtccagatgtagtgatctggtaaatttcagttccttggtactatctgggaggcctgatgatcaatttcctgagaaaggaactttgat Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 181740031 181740032 1001511 0 - pAlu4-182087477;1104685740288; RIP_Alu_chr4_181_03 NA;NA NA;NA SINE Alu Ya5 tacttatgtgtgcagggacgtcaataattcatatttttgacatccagacattatatgacccactgaatattcttaattagttggggaaggaagcatctgt
atggattcacaaattgttttaaacatgcttttaaatattttaaattagagcttccaattaaaattgtacatgtcacattgtctcatttaattccactgtt
ctttttaggaagcacagcctcagctgaacaagcctcactgatgtgagctgagctcaattagtttctgatgttctgccaaattgcctcattacctgtcata
caaacaccactgacacttttaaagtggagccctttgcatccatattattgtctttagaacaaaaataattattctcattagagtagtaaaAATAAGCATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATAAGCATTttgctaataaacagtaaaccaatatatttgtaatataaataatacaataaagcaatgatgagacataaatcaagtgt
gtgcttacacatatacgtatgtgcccctgtggggacacacgagcacacaatgttttaaaattatatagactgtgggtccttcatgcagtccctggaggtt
tgttattacaattactttgaccactgggttttccatattaactgacaatgtattgatgataagagaaactaggagttttccattctgtctatatttgaat
ttaaaatgtacttcacccttggatcataaaaccattatgaattcctcattgtacagaaggcttaaagtggcttaaaatacacttacactacattctagaa
gagaaagtataag Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 180493964 180493965 1001512 0 - pAlu4-180841405;1104685739857; RIP_Alu_chr4_180_01 NA;NA NA;NA SINE Alu Yi6 aacagaatagtctatatggattaatgaacaattaatttatttgtactactttctacttattaaaagatggacacaataattctgcagtattagaaaattt
cccaagttctttcttctcacttacattgctggacttctacttatacatattttcttcactgcataaaaaccttgtaaagttcaccaaaggctgtagaaat
tcctctgcagtgcagacaatgcaaacaaaatccacataaagattcccactacagggtaaactctcaaaaatattttctggcactacttgacagcattgga
aacaccaggccacttttgaatgcaataaatagactctaacatgcaacgcatatacctggacacattctggagacatttaggcaatAAGAAATTTGATTTA
GGCTGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCTAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAGAAATTTGATTTAatggagtaaaaggcagaagaggtcaatggaactagctgaccaatattaatcacagacttgttaaaactgttatcaagaaacaaa
tacaagtaataatttatagaaagaggattagacacatgagctgtatgtaccagatgtcagcatgctattctcaaattttctaaattcaacaaatgcttcc
tagagtgaatttattcttctaaatttagcagcttatgaagggaatttttaataagcaagaaatacctgtaatctgtttaagttgtctatattaattaaga
aaattggctgcaaagcacacttaaagcctattcttcacgatacacaaaacaactttacctacatagtttatctttgaaaaacgagtttattttcccatac
c Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 175770881 175770882 1001513 0 - pAlu4-176118742;1104685738339; RIP_Alu_chr4_175_01 NA;NA NA;NA SINE Alu Yc1 agagaattctgtacaaacagactttgttaaaataattcttatctttcattagcctccccacataatttagttacttttccagaattgctgctctttgtta
aacctgataatatggtttagatgtttttttccactccaagtctcatgatgtaatgtgatcctcagtgtgggaggtggggtttggtgggaggtgtttgagt
ggatccctcatgaatggtgatatgggttggctgtgtctacccccagatctcatcttgaattgtagctcccataattcccttgtgttgtggaagggaccaa
gtgggagatatttgaatcatgggggcagtttctcccatactgttctcatggtattgaataagtctcacaagatctgatggttttatAAGGGGAAACTCCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATAAAAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGAAACTCCTttctcttggctctcattctcttctgctgtctgccaccatgtgagatgtgcctttcaccttctgtcatgat
agtaaggcctcaccagccatgtggaactgtgagtccattaaacctctttcttttgtaaaatgcccagtcttgggtatgtctttatcagcagtgtgaaaac
ggactggtaatagactggtaatgtacagtaatggactggtaccagtagagtggggcactgctgaaaagataccaaaaaatgtggaattgactttgaaacg
gggtaataggcaggggttggaacagtctggagggctcataagaagataggaaaatgtgggaaagtttggaatttcctagagacatgttgaatagcttcac
ccaaaatgctgataat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 175023283 175023284 1001514 0 + pAlu4-175371158;1104685738113; RIP_Alu_chr4_175_02 NA;NA NA;NA SINE Alu Ya8 gttagtgacagtcctgtccatcactgtttctgatattctgaaatttgtgatggcttagaaatgaaactaaaagcatttaaaaattttgagtagaaagtga
aattttcagacttaagggactttgaagtgaaaaaaaagttgaggcatagagctttaagagtcaatttccatcttcgttagcttttttttctttacttaaa
aatatcatcttaaaaaaaaaacactgagccctttatcacaatttttctccatactttcctcttctggtttatggacttctgcataggaattagtaaaatt
tgtaggcaaaactttagtttcatatgggacccatttaattgtgtaccttaaatccattggaaagctagaataagctttcatcttaagaaaGTTCTTTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGGTTCTTTCTGaagataatgggaggcttctgtttatggaccaacaatttgaggaatgtagtgatcacatgtatacaaataaatggctcaaaa
aaggtcctcaataaatcataattatcacttattattgagtctagaatgataaaagaattaacaaaatatgttttataggcatttatttaatttaaataat
gctttatctaaaagtctgaaattttgaatgatataagggaaattaaaataattgccttctattttcaattaactaccactataaccaaaccataaaaatg
tttatttttttgaaatacgaattttggtaacatcctgtatgtctcaatgtagcctattgattaaataaattatataggtatttatatcatataaagtatg
ttgtcatta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 167558250 167558251 1001515 0 - pAlu4-167804973; RIP_Alu_chr4_167_04 NA NA SINE Alu Ya5 gatataatagattttataaaaagtttcatccaacagctgcagaatacactcttctcctcagtacataaattattctcaaggataaatgacatgttaggca
acaaaacaagtcctgaaatactcaaaaagtttgaaataatatcagtcatattctcgatcataagggaatacaattaaaaatgagtaaaaataggaatttt
gggaattatacaaatacatggaagttaaataatatgctcctgaagaaacactggatcaaagaagaaattaagaaaaaaatttaaaaattacttgaatcaa
atgataatagaaacacaacatacaaaaacctataggatacagtgaaagcagtactaagaggagagtttacagctataaactcctgcattgAAAAAGTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAAAagtagaaaaatgtcaggtaaacaacctaataataccttttaaagaactgaaaaagcaacagcaagccaaacctca
aattagtagaagaaagacataataaagatcagagcagaaataaatgaaatggagatgaagaaaacaatataaagttcactgaaacataaagttgtcttaa
aataaacaatttaaaaaatcaacaaatctttggccagactaatgaagaaaaaaagagagaagaccccaaaacttacatcagggatgaaaaaggagttatt
acaaccaatacaacagaaattcaaaggatccctagaggctactatgagcaactatgtatcaataaactggaaagcctagaatacatggacacattcttag
acacatacaacttag Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 164977214 164977215 1001516 0 + pAlu4-165223948; RIP_Alu_chr4_165_01 NA NA SINE Alu Yd8 cagagtaactggagaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataat
acaggactgaattagagaaatagaaatgcattttttgtgaaaattaaaaacatcatatgtataaatataaggcaattatcatatttgtataatcataaga
aagttaagtgcctaacataaataaggacacaccactaatttttggtggattcagaatcannnnnnnnnnnnnnnnnnnntgccttggcctcccaagtgct
ggggattacaggcgtgagccaccgcgcccggctaatttatttttttgatacacatttactctacgttatatttcagggcttgttaaaagaATGCCTCCTA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GTGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCAGCCTGGGCGACAAAACGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGGATGCCTCCTAgtctctctgctgtgaggaagaaagttctacctttagaataaagtagacaaaataaggaaacagagggtccat
ctggccaaagctgagtaatagaagctgtagtcatcagcagaggtaagtgtgacccccaataaacagtgataccaagtgcgccgccattggcagcaaagag
cactgagtctgcttgatgacaggactacaatagaagaattattcctgatctcatgtgagttagcccattagccccctggaagcctcacagagtaactgga
gaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaattttaataattgctcgtatataatacaggactgaatt
agagaaatagaaatgcat Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 151231090 151231091 1001517 0 + pAlu4-151477829; RIP_Alu_chr4_151_03 NA NA SINE Alu Sp ataatgataaaaacaaaacaaaacaaaacaaaaaaacgcacaatgaaaattcccatagtgagctcctgtagattttgggaggccgaggcaggcggatcac
ctgaggttgggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacgactgtaat
cccagctactcgggaggctgaggcaggagaatctcttgaacctgggaggcagaggttgtggtgatccaagatcgcgccattacactccactccagcctgg
gcaacaagatcaaaactccatctcaaaataatgataaaaacaaaacaaaacaaaacAAAAAAACGCACAATGAAAATTCCCATAGTGAGCTCCTGTAGAT
TTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAATTAG
CTGAGCGTGGTGGCGCACGACTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCTGGGAGGCAGAGGTTGTGGTGATCCAAGATC
GCGCCATTACACTCCACTCCAGCCTGGGCAACAAGATCAAAACTCCATCTCAAAATAATGATAAAAACAAAACAAAACAAAACAAAAAAACGCACAATGA
AAATTCCCATAGTGAGCTCCTGTAGATtttgggatattcttggccccatgtatgaggagcaaaaaaaccagatcacagatctgatctgctggttccatcc
tacccaggagattagatacgatttcttcctcagtgggtaagctacaaagctttttggttactgggtgggttttcgtttttacatttagctaatttatttg
gccttaagttaaactcctcccagatttcaatgctaaaacatggatttgtggacatacctatttcttcatagatattcgtagggtcaaagcagattttgta
cccccttctcggtagaaggtatcacagaccatacaactggatgtgactttaggagatgatttggttcagtcacttgcctgcag Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DCLK2:NM:001040260:1/16
0 chr4 104964066 104964067 1001518 0 - pAlu4-105137815;1104685673325; RIP_Alu_chr4_105_01 NA;NA NA;NA SINE Alu Ya5 gaggtcgggagttcaagaccaacctggccaatgtggtgaaaccccatctctactaaaaatacaaatacctgagcgtggtggtgcatgcctgtaatcccag
ctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtggggagccgagatcgtgccattgcactccagcctgggcaacgagga
agacaccatctcaaaaaaaaacaaaaagaaaaagaattagtagcatctctttgcttaacctgtctgagatcagttggacagagaccaatcaaatatggcc
atgtctctattaaaccttggctcagccaggttattctgcagggctcttatactaccgccttaccctgtgtatgaaggatgctgctAAAAAAAATCACCTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATCA
CCTAtggtgctgtgtctatgttttgtggaaataatatggctcaagaagactcaatctagccatctctttcaagctgcccaactcatactgtcctgccaaa
tttactctcatgtagctgcatgccagttggtacagagtggccaatgaggagtctgcacgtacactcccaacggtgattatgagtaacatgtgtctgctcc
tagcttaaattatgatcattaacataatgtactccttagtaagacaaggcccacagaaaagagaatcagaacataattcagaaattttttgtctcttttc
tatttttgtttccacacttcccttagggactaaagaataaattaacagtttcttcattcatttttctgtatagatttccccataatatt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 66789212 66789213 1001519 0 + pAlu4-67044377;1104685186329; RIP_Alu_chr4_066_02 NA;NA NA;NA SINE Alu Ya4b tttttgcactagctgaaactttctgcctgaaaccctcttcacccatattatttcatgacttatcccttctagactctgagttattggtgaaaatgtcatg
tcctccaaaggactacttgctgcctaatagttcctaatttctttattagtctattcatttattttgtggcttcctccacaagaatataagctccacaaga
gcaggggattttgtcttattcgtatcattctatcttcaaagagggtaagagtacttgacacattattggcactcagtaagcaattattgaatatgcaaca
tgcaatgataggagtgccccaattagtatagaaaatcatagatacgtctttgtaggaaaagacacttgcagaatttcaagttAGAAAGATTAAGATTTGC
GGCCGGGCGCCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAGAAAGATTAAGATTTGCtcaggtgtcctttatgtgtgggctgaaaaaaaaaaagttattatcctgaaaagaataacacggtatgagggagttcacctt
acatggataaagaaggctgtgttgatgacctcaaaggaaaaggcaacacaagaaactaaatgtttataaggtaatgtcacttcttagtaaagcttgtgtt
taagactggaagacggaagacactctttacgtggtgttccagcaatcttgcttgataaaaatgtcttggtataagatcatgaagaaaaagtaagtgtaat
tattaggatgaaggggagagaactttgctttctaaccagggacctcagccagctggagaacacttgctacacttgactagcaatcactgaactgtgtata
a Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 79378540 79378541 1001520 0 + pAlu4-79552295;1104685667515; RIP_Alu_chr4_079_01 NA;NA NA;NA SINE Alu Ya5 caacttaaccatgatcatgcaattaataaactgctgcccagagattttacctgaagtctgactgatgccaaagctactgacattaacttcaacatgcatg
aaccatcgaatggattgaaagtcagaactgacttattgaaaaagattttctaaaaatatcatttgggtctgccactgattgtattattgtgctactattg
ggctccctaggaacataagcaagtctttgactcaataaatctccttgtatttgaccaagtctatgattggtatttcctcccttcccttctgttaaaaatt
ttcagttttcttctgactacacatctattctgttagaataatactttttctagttgctgactcttttctttttaaagtgaatctatttttTAAAAAAGCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAT
AAAAAAGCTtaagctttaaatttgaacttctgaaactcccaggacaagaccaattattgtattcataaagcattctgtcaatttaaaaagtttatttttc
tagtttttggcttcctccaataattaatcttgagtctttatgccatctaatgctaataaggttctgtttgtaccagacactgaagtgaaggtatgccttt
aagagtattccttcatttctgcatgagtgtattcctgagaagctgggagtactttaagtattggcaaatttgataagatttttattgtatattatggagc
tttatgtttatagggtaaatattcctaaaaaaatcattatttggcttgctaagcaagtcatgtcagaatctgagctggtggcaaaaacgccatgaaaaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:FRAS1:NM:025074:3/74
0 chr4 82849173 82849266 1001521 0 + pAlu4-83022928;1104685668257; RIP_Alu_chr4_082_02 NA;NA NA;NA SINE Alu Ya5 tttattgcagcacaattcataattcataattgcaaagacaagtaaccaacctaagtgcctgcccatcaaccaatgagtggataaagaaaatgtggtatat
atagatgtggaatactactctgccataaaaaagaataaaataatatattttgcagaaacttgcatggagttggaggccattattctaagtgaagcaactc
aggaatggaaaaccaaacaccgcatgttctcacttgtaagtgggaactgaactatgggtatgcaaaggcatacagaatggtataatggactttggagact
cagaaggggggaaggtgggaaatggtagtagagaaaaaactacatattgggtacaatgtatactacttgtctgaccagtacactaaaatATCAGACTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCTGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATCAGACTTCActactatacaattcatccatgtaaccaaaaaccacttatccccaagagctattgaacttgaaaaaaaaattatctgttttt
tcattctccagctgaatggataagacactaagaatataaaagagggtagaactgtaagatggaaggaagttgggtctctgaatggaacatctcctcatcc
ctcccatctgaacaagaaaattaatttttattgtatcaagctactgaaatgcaggtttttttcatacagtagttagcctgcctggctagtgagtattatt
attaccattcaaaagcagaagttttaagaatgtaaggaatggaatttaaattataaatatatgtttaagtttcattctagtgaaaataagatacttgaaa
atgccaat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 83559717 83559718 1001522 0 + pAlu4-83733473; RIP_Alu_chr4_083_01 NA NA SINE Alu Ya5 attaatagaaatgttattacataatgagagcaatatatttgacaaataaagccattcaaaacacattgtctatggagagaagaaatttaaagggtttcct
ggtgatgaaatattgaaattattctataataccacttaacccccactgctcccaccctcctgtcattcctctgcttgcagggtctatgaaaaacatatat
gccccagatgtttcatggttcaagggcaatctaaatagtgagtcaatttcataggccatgtctttcatgggaagagtagttgctccagattatccaggct
caaattccattaaaggaacaagaatggatcaattgtaatataatcctactttgctacaatagagctcaacactcagaaaccaagtgtattAAAGATTACT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGATTACTGgaccagtcttaatgcttaaagtcaagtatgcctgataggagttttatagtttaatagactgcagaatgta
atcagcattggtgcattcaattagctgacttcctcattttaaaatcaggggattaaagctaaagctgggcatggtgacacatgctggtaatcccagcact
ttgggaggcctaaacggtaggatcactggagcccaggagttcgagaccagcctgggcaacatagtgagtccctgtctctaagatgataaaccaaaaaaaa
aaaaaaaaaaaaaaaaaaaggttaacttgggcgatatggcaagacctcatttctactaaaaatcaaaaaaaaaaaaaaattagctaggtatgatggcaca
tgcctgtggccccagctaca Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 56066719 56066720 1001523 0 + pAlu4-56221885;1104685021301; RIP_Alu_chr4_056_01 NA;NA NA;NA SINE Alu Ye5 ggctcacacctgtaatcccagcgctttgggaggcggaggcaggcagatcgttagagctcaggagttcaagaccagcctgggcaacatggcaaaacccctt
atctactaaaaatacaaaaattagctgggtgttgtggcacgtgcctatggtctcagctacttgggaagctgaggcaggaggatcaactaagccctggaag
tccaggctgcaatgagctgtgactgcaccactgcactccaggctgggtgacagaacaagaccttgtctcaaaataaaaaataaaaaataaaattaactgg
atgtaatttccagttttatacatagctgctaaacatgtttcttaaactttatacttggaaatcattcaaacatgcagaaaagttAAGAATAGTTCAAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGGCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATAGTTCAAAGAGgcttctacatatcctttatcctgatttgaccaactgtcaacaacaatcctgttgaccaactgtcaacattttgcat
tattgtccatatcatacataaacatattttttgaaccatttgaaagtaaaatgcacatatcatacctttttacctctaaatacttcaactatacctccta
acaacaaggatattctcttaaatatctacagtatagttaccaacttcaggaaacttaacagttatacagtatcttaatgtaatgcctattttctctcttt
ttttgttttagttgagcaaaaactgccctccaagactttttccctcttccaatactgaatccaatccagggtcatgtactgcatttagctgtcatgtcta
cccagact Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:CLOCK:NM:004898:2/23
0 chr4 100595831 100595832 1001524 0 - pAlu4-100769574;1104685672398; RIP_Alu_chr4_100_03 NA;NA NA;NA SINE Alu Ya5 tctagttgtctgtctgataaatgacattggctagtattccttcataacatctctcatctctagtggagaaattgataaggaaatatgagaagaccaaaac
tagaggagcagttcagcttatagaaatgctaagggaattcaaagggacttgaaaaacagataagctttaaaatatgaaaaatgctactttttaatcaaaa
gtgacattacaattttagagactaaaacatgatgttcaagaaaatgtctttcattgaaagaatacaaaaatgtagactggtagttcttcatagagtatgt
ttttgctgagaacaaattagcctagattttatctttactcttctttttggaaagtagagttatttggggacaaaagattattgatatAAAAGTTGATTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGGGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGTTGATTAAacatgtattatattgtaaacttcttggaacagaaactacatcataaccattttaatactgccaacttaaataacaaacagaagaaaaggc
tctccaaaagaaaatgatgtttattcaggaatagggtattgcaatgggaatatgtgtgccacagtgtactatgtgcacattcagggagatgaagaaagac
aaaggttttgaaaggaaaaatgaggcgggatgtggccaagaaagccaactagaagcagctagtgtgcatggctttcatggagaaaaagagaaggggcaag
taaatacaacaccttcaactgaaacatccaggtacccgcattgggactaattaaggaaacaatttgacccatgaagaatggagaaaagcaaggcagg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr4 102260771 102260772 1001525 0 - pAlu4-102434515; RIP_Alu_chr4_102_01 NA NA SINE Alu Yb7 tgatttttgcatagtttccttagatatttgtggtatactgaagaaacaagaaacttaagacccgattcatgtttaaattagagacagccacatatgtaaa
ttttcaaaatattcaaagactttatggatgttatgatttaagtcagtttaagatactgtgacacctatttgttttatagaggtaaacaaaaatgattcat
ctcactgtggcatataaaaaaacttttatatagtgtcttcaattgaacattagtcctgacatgtaaatttaagataatctaatctaagttctcagatttt
tagatttgtacttcttttggacaaagaaaacaatctcatgccttttcttaatgtaatttgaaatttcaaagtgaaaacatcattataaAAGTAAATGTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAAGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGTAAATGTAAagtatttataatttaacaattatttttagaaaaattatatatgctactgcctctgttgagtaatgtgatggatgg
aaatgggcaataaaatgatttgcccatatcagacatcaacgggagacctaaggcctaaacccgtaggagtttccagtacagagagggaaatccactgatg
tcaggaagctgatgcttttcagtaccattgtttatatctacatcttctcaagtatgcccttcttgaagccatatttttatttttgttattatcccagtat
aatgcagcacaagtgaaacgtcaaccagtcttcagtgtttattcatcttttaatacagaatatttagtaaatatttcatgtttcagtgttttattcattg
tttggatatttaa Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PPP3CA:NM:001130691:2/13
0 chr5 103492326 103492327 1001526 0 + pAlu5-103495288; RIP_Alu_chr5_103_03 NA NA SINE Alu Yb7 acattatttaaatgcttttcttcaccttttaattagagaagacttcgaatgctggtttgggaagaagtgaaaaaggaggatttcttgcggtactgcctta
acttgtgcatcctagtcagtaaaatgagctttgtagataaatgggtccattcattatgggaaacagcttaacaaatatcagtagctattgaaacatgtat
ctttgaggacaatcttgtcccaaccctcttacgcaataccactttcaatcatatagagttctggaaattcaatattatctatcttattatatttacagtg
gtattttgacttcccctatagactggaaattggcttcctggcagctcacgagcacccttgacatttaaaagagatttagttAAGAAATAATATATTTTGC
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTACAAAAAAAAAAA
AAAAAAAGAAATAATATATTTTGCttggcttatttgcatttaagggcttggtggtggggacaatgcaagtctggaatttaaaagagcctacagcaggaaa
tatcactttaaaagctatcgtaatattgatagttaaaaccatgttaattgatgtcttcttggtaaggaaagaaaaatatagagaatcatgagcttaaaag
cacttgagcacttgggaacaccaagatttaaagatggaataaggaagagcaattggggaataaaacagaaaaaaaaacccaaaaaacaaaaaagtagtca
gaattgtagaagagattagaaacattgtgaatggaatgacaggaaaagatgaaagtttcaataaggtgatggtgaatagtgtgggaaagcgaaaagaaat
acttg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 61892876 61892877 1001527 0 + pAlu5-61827643;1104685480632; RIP_Alu_chr5_061_03 NA;NA NA;NA SINE Alu Yb7 atgggctacatacatgttttgaataagtctgcttagctgtcaggattaattagagtcagtttctggttttgctcaaattatccatttccagctcatgact
taaccccagttcaggtattccagttctgtggtttactataattgaattttaaccatgacttatgaggctttagcctttaaaagtatttacccacaagtaa
aacatattttaggtattttgagatgcctcctcctcttgtttcagatggaccagcttttgggaaatatgattgaaatgtgggttgatcgaatggacaacat
tacccagcctgaaagaagaaaactttcagctttggctttgctctctcttctgccatctgataataggtgaggaaatgttttcttAAAATTTGTTTCTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAATTTGTTTCTTTCaagcatcaaaatgtaaacactatttttggccatcagtattgctgtgtgttgctgggcagtggtacttttatata
tatggatgtgaattttgttagctgataatgatgtggtaaatgttggtctggatccagaaagcagtgagtgggataggtactgttggattgtgggggctgt
agtttattttggttgtattcattttacaaatttatttcattcttgtctgaatttccattttttataattacgttttattagactaatcttcagtcctctg
tttacatagatatattaaatatctaacatttcaaagtcaatagcacttcataaagtatgttataaagtgtgttaattcaacagtattattagttttgttt
tctttttatt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:IPO11:NM:016338:27/30
0 chr5 55963738 55963739 1001528 0 + pAlu5-55898505; RIP_Alu_chr5_055_01 NA NA SINE Alu Ya5 gaagtcaactgctcagaggtatttcaaatacccagaaatgtccttatacaccacagtgttcaatcaacttccccaaagtcccaacagtcgtttagaatat
gacttcacccaggactgctgggttgcacaactccaggtatactgtttgtattatattctatgtgaaggtctcccctggagtagtacagcattgccccagg
ctgttttcctacatttatacgagagtaaaaatgaagaggagaactctctggctacctaaaaaaccttgtgttgatctcacctcagggctaatgctggagt
ctcttttggctttagtgccaaggctctacttgttgattcacttatcaaaatatatttgaatatattttccaggcagaaagccttttAAAAGATACAGAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGTCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAG
ATACAGAGAcacaaagcttctctaagacaaactctgaaccagggcaacagagaaaccctctgctcccaccaccaggctatctagttgaaacaggagttat
gactggataagtgtcaagaacataaacggaaactgtctctgaagcacagggcataaagcagccttaaagctgaagatggagtagaagcattgaaaaaaat
cctccagtaatccaacctccaccccaagggcaaggtaaaattagatgaattgaactcaatgacacactgagggcaaccatggcaacagcaaaagccaaac
acaattcagctcctgattagactgattcaacatcaccccctccttcctgattaatagcccagcagaagggacgtgtccatttctaggcataagga Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 39328738 39328739 1001529 0 - pAlu5-39293110;1104685203214; RIP_Alu_chr5_039_01 NA;NA NA;NA SINE Alu Yb7 gctatctatatctcttaaatggggaacttaatgtatttaccttcaaggttattattgataggtgaggacttatccctgtctttttattgattgttttctg
gttattctgaatatcttttgtttcttttttccttcctagttgtttatctttgcagttgaatggctttctgtagtaatctgggcatgtaagaccccctggc
cttccaaccaccacagatgcctttctgcttccccctgaactccagcactctccctttaacatttcagttaaatcttgtttattcattacattgttccttt
cttgtcctgactattcttttttattcagtatgttatatgattccattttatttccagtattgatatattactcatgtctcttttaaaaaATATTTTTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATATATATTTTTTACtctataacatatgattcacaatatacatccttaatttatcatagtctgccttcaaatgat
attatgctgccttatgtatagtgtaaaacaaatacactatatttccaaatcctccctcccatttttaatgctatttttatcatattgtatcatgagttta
tagtgtatgtatattttacatacatatttttaaatttttacatacactataaactcatactacaatgcgacaacatttgctgtagataatatatgttaga
gcaattaaaactagaaaggtatatttttgccttcattttagttatgctcagagctcatgattactttatgtaggtccaaattttagttctttgtggtaat
tcttctgcctgaaaaatttcctttggcat Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:C9:NM:001737:9/11
0 chr5 45641876 45641877 1001530 0 - pAlu5-45606247;1104685204628; RIP_Alu_chr5_045_01 NA;NA NA;NA SINE Alu Ya4 gtgaaatcatattctctttttttcctatttttaattattttttctttttttgttttacatcagcttagacatgatatacatatatatgcacccctacccc
acacacaatctgttctgtaccaggtggagtttctgtatacactcactttgttatactgtctaaaacaaaaatcgtttgttctttttctatttttcactag
gtttaatgcaaaggaaaatgttttaaggtataaaagtgagagaaattttctggcaatggttgcttaagtagtataagagtcatggtgttcttgatggtgg
aaccataaactgaaagagttggctgacttaacatttccaaccctgcctggggaatatttgacaaagtttgaggtgaaagtttgtgttAAAAAATTAAAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATTAAAGGatgtgaagctaatatttcccatcaagtatgcttacctttgaattttaattttgcttataagtttcattattcacacacaagt
cagaaatgttaatttagctctttctttagatgtattaatttctctcacaaaatgtcttttcaaacttattttttaatcttcacaggtgagttaattttct
ttaatttgtaatcatttttaaacaatattaccagagtgatacatctactctttaaaattgtaaatataattatgctaagagaaaaatgaaagtcctcatt
cagatgaggactgactccaatagtttcattcaccagataacaactgttaattgatttatctacattcttccagtctctttggctatgtactcatgtacaa
tgtac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:HCN1:NM:021072:2/8
0 chr5 170133918 170133919 1001531 0 + pAlu5-170136882;1104685440859; RIP_Alu_chr5_170_02 NA;NA NA;NA SINE Alu Ya5 ggcactggaatacagcagggagaaaagagataaagaccctgcccatgtgaagcttgtgcactacggggaggagaccaatcaataataaacataacaaatg
actcgactgtggaggctgctagaaggagatgaggcagggaaaaatgagaagagcagggtatgggggacagaatggctgtgatggcgaatattggaatatg
aaatgtgactgacctgtagaggcagttagggaaatgctgattttgcaaatgagatcctgtcatttccaacatggatggaactgggggacatgttagatga
aataacccaggcacagaaaagctcacttcccaggttctcattcatttgtgggagctaaaaattaaaacaatttaattcacggggatAGAAAAGTAGAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAAAGTAGAATGatggttaacagaggccgggaagggtagtggggttggggggatgtagggatgattaacaggtacaaaatatgcaatg
aaagcaatgcaatgaatatgatctgttattgatagcagaacaaggtgactacagacagcaataatttgttgtacattttcacataactgagggagtacaa
ttggaatgtttgtaccacaaggacatgatgaatgcttgaggttatggagaccccatttaccctaatataattattacacattgcatgtctgtatcaaaat
atctcatgtatcccatcaatatatatatacctactatgtgccataattttttaaataagccatgctgaaaagggctcaatgaagtgacaaacagaatgaa
ttattttccc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr5 162164530 162164531 1001532 0 - pAlu5-162167486;1104685442930; RIP_Alu_chr5_162_01 NA;NA NA;NA SINE Alu Yc1 gaaagaggaaaaaatacagaaatagggaaaacaaatttcaaagacagagatattgaacagcatacctatcttaaatctggtgctggaagaaaggttgtga
atatatttttaaaagtagtacaacttacttaacaatgatcctgggtttccatgagttgtattttccatactacccaaaataagcatctctgataagcaag
acttagtgctttagttaacattacatgtttaaaataaaaaaaaaaaaataagaaatatacttgttttaagttaaataagtttttctctacaattctcatt
cttttgctttatataatcatgataattattgctgatctctctgttgctatcaaataccacccctggaaagtttaggattgttccttAAAATGTACAGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATGTACataaaatctgagaaaatctactttggttagaatacacatgtgaggaatgggctaagtgagtaagctgtagcaagaagagatggtttcctg
gaaatagaagcagaggaagcttttgtgattaaacataaatcctttgagtattctattagttagggggccattttttgtaaataatgctctcttttgaaga
tgcaaagccaataaaacttttttttatttttttttattatactttaagttttagggtacatgtgcacaacgtgcaggttagttacatatgtatacatgtg
ccatgttggtgtgctgcacccattaactagtcatttaacattaggtatatctcctaatgctatccctccccccaccccccaccccacaacaggccc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr5 155223203 155223204 1001533 0 + pAlu5-155226167; RIP_Alu_chr5_155_01 NA NA SINE Alu Ya5 taatggccgcccctgcagcctggcttcccacctggctgcagtttgaggcagcaggttctcattatgctttattcttttttcaagaatgtgttcttgaaat
tgaattagatttgcttccttcatagcatgtgttgacttttaaatgacttcctggtgggttttcctcaagatcttcaaccacgatgcagaggttctcaggg
taaaatgaagtatccaacccaatgagaaaacaatgtattatttccttaccttcaggtttaactggaagatgctgcattttgagcagtcatgatctttatt
tccccaaatgcttttgctttccctgctgggatggcctaagtcaattaccgtcctctgcctgaagtattattagtcttcattcccagaacAAAGAAAATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTCGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAATTCataccatcatccaggaaaattgccaatcttcttgaaacggttgcattttccatgggtactgaaatgtactctccatgggagat
ttggagatgaaggtcaggattccctatagatgtatcccagggatgttgctcagaaagatatctctttcctttaagtacttgagaaggaatctgaattggt
aatgtttctattgtttttcatttgtttattcattcattaatacattcaacagatatatattgaccatctgctgtgtgccacgcacataatagaaaaaaca
gacaaggaccctactgtcatggaaactgcatttcagtaggggggacagacaaataaacaatcaaataggaagtacattagatagtggtaactgctaagga
gaggag Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 148076974 148076975 1001534 0 + pAlu5-148079938;1104685235457; RIP_Alu_chr5_148_01 NA;NA NA;NA SINE Alu Yb7 gcactcaatactaacctgtgaaaacagccgccctgggctgtaccctgcagagccacaggggtggagccgtccaaggccttgggagcccatcccttgcatc
tgtgtgccctgaatacgacacatggagtcaaaggggatttttatggagctttaaaatttagtgacttgcctgctggatttcagacttgcatggggcctgt
agctcctttgttttggccaatttctttcatttgaaatgggagcatttacccaacgcctgtacccctattgtattttggaagaaactaacttacttttgat
tttacaggctcataggtgggagggacttactttgtctcagatgagactttggactgtggacttctgagttaatgctgaaattagttAAGACTGGCAACTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGACTGGCAACTGttgaaaagggttaattgtattttgcaacgtgagaaggacatgagatttgggagaagcaaggggtagaattatat
tgtttggatttgtgtccctgcacaaatctcatgtcatactgaaggaaggacctggtaagaggtaacgggatcatgagggcgatttcccccttgctgttct
tgtgatagtgagttctcaggagatctgatggtttaaaagtatgtgacacttcctccttcactctctgtctctcctgctctgccatgtgaagaaggtgctt
gctttcccttcaccttctgcctctcctgctctgccatgtgaagaaggtgcttgcttccccttcaccttctgccatgattgtaaatttcccaaggcctccc
agtcatgcttcc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr5 146349820 146349821 1001535 0 + pAlu5-146352784;1104685235827; RIP_Alu_chr5_146_01 NA;NA NA;NA SINE Alu Yb7 aggtttttctctaagatctagaacaacacaagaatacccacgtttaccactttatttgacatagtactgaatattctagccaaagcaagtaggcaagaga
aagaaacaaagggcacccaaattttaaaaagtggaagtcatattgtccctgtttgcagatgacatgaccatatacatagaaaatcctaaagactccacta
aaaaactattagaattaataactgagtatagtaaagttgcaggatacaaaatcaacacaaaaatcagtagcatttctatatgctaataatgaactatctg
aaaaagaaatcaagaaagcaattctattacaatagctacagaaatgctagacataataaccaaggaggtgaaatatctctacaattaaAACCATAAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACCATAAAACAttaatgaaagaagctgaaaaagacaaataaatgaaaagacatcctgtgttcatggattggaagtattaatattgttaaaatg
tccatattatccaaagtaatcttcaaattcagtgcaatttctgtcaaaataccaatgatattcttctcataaatagaaaaacaatcttaaaattcatgtg
gaagtgcaaaagaccctgaattaccaaataaattttgagcaaaagcaacaaagctgcaagcattacactacctgacttcaaaatatactataaagctata
gtaaccaaaacagcatggtacttatagaaaaacagaccaatggaacaaaatagaaagcccagaaagaaatccatgcacttttaaccaactgttttttgcc
aaaggt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:PPP2R2B:NM:181677:3/11
0 chr5 18605922 18605923 1001536 0 - pAlu5-18569744;1104685545587; RIP_Alu_chr5_018_02 NA;NA NA;NA SINE Alu Yb10 ttcttggtgcttttgtcaaaaataagttggcgatagacaggtggattaatttctgagctctctattctgttctgttggtctatgtgtctgtttttatgca
agcactgtggtgttctggttactaaagctttgtggtgtatttagaggtatggtagtgtaatacctccagcttttttcttttagcttaggattgaagctaa
gaaaaaatacgttaaaaccaaataaatctcagcaaactaattctctggcattatttaattcttcttaaaactgctcatttgcatattcctccccaaaaag
atatgcccaaaggacacaattgtttaccaacttgatgtggattccacattatcacttttctctctttctgcggaggtttttcatatcaattAATAGTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAATAGTTTCacatggaaggggaaaaaattaaaaatattcatattctattagcattcactgaatggttagaatggtattagtccgttctcacact
tctatgaagagatacctgagactgggtaattcataaagaaaagaggtttaattgacccacagttcctcatgactggggaggcctcaggaaacttaaaatc
atggaggaaggcacctcttcacagggtgacaggagaaagaatgagagatgagagaaggggaaagccctttacaaaaccatcgtatctcatgagaactcac
tattatgagaacagcacgagggtaactgcccccatgattccattatttcccactgggttcttcccatgacacatggggaatatgggaaatataattcaag
atgaga Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr5 86408452 86408453 1001537 0 + pAlu5-86411408;1104685646902; RIP_Alu_chr5_086_01 NA;NA NA;NA SINE Alu Ya5a2 aacgcatttatttaggaatgctttccaggaaaaggcatttttgtcataggagaaaaatctatgggtcataacataggacatgacagtttcatgcgggcta
ttgcccctgaaggccttccaggaccttctacatgaaggggttattgcccccggaaggccttcaggggcaatatgttccaggacaacatgaaggtcccgga
aggccttcaggggcaatatgtcccaggacaacaggtagaagtggtaaacagtggtattttccaccagcataggcccaggccaagatgtgtgtttgtgtct
acatttttagcaaaatagttttaaaataaaagaaaattaaaaatagaaaaggtacgtggaatagggatgtcaagatacaaaggatataAAGAAAATATTT
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATATTTtt
ctacagctgcacaatgtatttgtgtttaagtgttattatgaaatagtcaaaaggtttaaaaccatttaaaagtttataaactaaaaaagttacagtaagc
taaggttattaaagaaagaaaactttttaaataaatttagagttacctaaacgtacattgtttataaagtttacagtagcgtacaataatgtcctaggcc
ttcacattcactcactcactcacaccattcactcactactcactcagggagtgactcatccagagcaacttgcagtcctgcaagctctgttcatggtaag
tgccctaaacaggtggaccactttaaaaaccttttgtatcatatttttactatgccttttctatgtttagatacacaaatactatt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr5 6337536 6337537 1001538 0 - pAlu5-6317258; RIP_Alu_chr5_006_02 NA NA SINE Alu Ya5 tatgcagaatgagcaaagacttggaaccaacccaaatgtctatcaataatagagtggataaagaaaatgtggcacatatacaccatggagtactatgcag
ccataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccaccattctcagcaaactatcacaagaacagaaaaccaaacactg
catgttctcactcataagtgggggttgaaaaattcttatataacactttaatacctttcattcatgtaagtttatttgatcctcacaaccttattatgtg
agctagtcagttattcttagtcccatttaagaaatttagcaaccaaacttcagaaaggttaagtggttttctgtttgtttccttAAAAACGTTTGAATAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAACGTTTGAATACataatttcaaccttgtcttctgttttaatattaagttatagttatttaaaatctgtgtcaaacatctg
tgcctccttgagtttctttctatgtatgtttctgttggtcttcttttgtgagcttttatttaagtgtttttctgttttaaattgtatccggatatggtat
tgccaatttgtatggaagaatattattgcttttctccagtgtagatttacacctattttgcaagatgcctggctacacaaacaatgtgagattacttctg
tctaatttcaaggcttcagatcattttaaattgaactgaaatactgtgagattctacgttatattgactcttatttttagggtgcagcttttgggattca
aatccaagagaaagac Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 16769627 16769628 1001539 0 + pAlu5-16749365;1104685152404; RIP_Alu_chr5_016_01 NA;NA NA;NA SINE Alu Yg6 tggatggaagagaaagtttgcatcctggagacaggacgaaatctatgtagttttaatgtatactttggataatttaatcctaccaaaaataagtagaaat
acttatttccacacaatctgaaaaatactatttcagaatgcctagatgattaataatgattaataacagggcacactaaaccctctacaaaaatcactta
caggcaatccttacctcctgcagcttatttagataaaggacaacagaggtgctgacaaacagggacaccaagagcagggagggtgcttcccaatgaagac
agaaatgcatttatttatgtatcaatgaatccaattgccctgaacattaccgagccttccataatttcatgaacagtgcatgacaatAAGAAGTATGACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AAGTATGACAGgtggatttggaaacagccatttgcctatggtaaggggacattcaatctgtgcttatttaatgaaagaaaatacagtgagtttattatcc
atggaccattaaagttataatgtttttcagcatttgagaaactcgcaaaaaccaaccaaggcatcctgagaagagcccaggaagacgtggctgggggtgg
taggaatccagcttgtcacacaggagccatgggtttttccagagccggccaagattttagggaaaagccattttgtagataacgagactggaaattagga
aggcaaaatgacttgttcaaaccggttattttttttatttttttgagatgaagtctcactcttgtcacccaggctggagtgcagtggtgtgatcttgg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:MYO10:NM:012334:19/41
0 chr5 4048200 4048201 1001540 0 + pAlu5-4027937;1104685056779; RIP_Alu_chr5_004_01 NA;NA NA;NA SINE Alu Ya5 actagtaacattttgccaactcaaacatcaaacccagacttgcttctttcacaaaagccactagaacttcctcaggaaatagttctcatagaagactcat
tgtgcaatgagctatggaaaactcctcagtcttgcaagcagaaagagtcctttggttttgtggggacaaggatgaggctgattgcaggacaaaagcaaaa
gagagaaagaagcaaggtagtaactgctcacctgcagccctcagcctgcctgggcaccttccctccagagttcatgaactccaccagctgcaggcaagga
tcaggctgaccctggatgtatgtgcccagcaatggcttttccacttataaaactccagccaggtcatgagtgccgcctcacctAGAAAACGACAGAAATC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGCCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGAAAACGACAGAAATCcactgcacacatggttccagaaaacaacagaaatccactgcacacacggtcccagaagtgtgggttgagggtgggt
ttgtaatgagctctttgtttcctgtgggtcaccctgccaggcccggtcaggatggggtctttcaccttcagctcaaccttggaccttcatccggctcctt
ggtgtccccttccccagggaagtgcctggctgaccacgtgccctcggatgaggcccacaggtttgttatggacccattctattctaaccacatcagcagc
aaccgagccttagcaatctcatttccaatttgggatgacagagagatctaagttcttgagcagcatggaatcagccagggacactgacctacacacgttt
atcagca Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr6 32578047 32616602 1001541 0 - pAlu6-32517693; RIP_Alu_chr6_032_03 NA NA SINE Alu Sg ccccaatttgatatccagctttaacacaatttctctctaattccagcaagatttgtaatagttgtagacaaagttattctaaaacgtataggagaagcag
gggaactagtataggtaaaacaaatttcataggaaaaaagagatggagaaataactgtaaccaaatttcagaagttttatagctatagtaatcaatactg
attgacattagtgcagggatagacatagattagtggagcagtataaagaatccagaaatacacctatgccaactcattttgacagagatacaaaataatt
caatggaggtaatatagtctacagtcttttcaaacaatgatccaggagaaagtggaaatccatagacaaaaacaaaaccaagcaaaaacaaatagAAGCA
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACGACGAGGTCAGGAGTTCGAGATCAGTCTGACCAACA
TGGTGAAACCCCCATCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCACGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCG
CTTGACCCCAGGAGGTGGAGGTTGCAGTGAGCCACGATCATGCCACTGCATTCCAGTCTGGGCGACAGAGCAAGACTGTCTCAAAAAAAAAAAAAAAAAA
GGAAGCAAAGGGAAAAAGAAGCAaaaaagaaacaacaaattctcacaccttatgaaaacatttaccccaattaaatcatgtctacatgtaaaacatttag
aagaaaacatatgagaaaatcctcaggagctagggcccagtgtctgagttttgagttcttagacatgacaccaaaagcactatgtgtaaaaaacaaaaaa
caaacaaaatcaataaatagggctttatcaaaatttaaaacttttgttctgtaaggtatcctgctaagaaatgaaaagtaaactagagatatggagaaaa
tatttaaaaccacatatattaccaagaataaattatctagaatctataatcaactataaaagctctactataaaatctatagtagactgcagactataaa
atttaattacataatggg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 170342694 170342695 1001542 0 - pAlu6-170176227;1104685292281; RIP_Alu_chr6_170_02 TGCCAGTGACAATGGGACGTTTGAC;NA GTTGTAATTCTAACGCCTCTC;NA SINE Alu Yc1 agatgtctgaagaaagggagctggtggctgggttctctgggctcttggctccacacttcacctgagttctctttgtttctccagaagctgatggaactgc
cgccatttcccaaagtaaaggaggtgagctctggggtgggtgaggtttcatcggtagcccggcctccgtggatcgctgcatgagccgggaaggtaagccg
agcggtaggacgtccgacggtgagtgaagatgctggttctgtgaagggaacggtgggcacctttaatctcagtgtccgagtcctgcctgccagtgacaat
gggacgtttgacaaggtctcttagactttatggaagcatcatgtgatcagaattctgtgtgaggggacgggcatccctggcttaaGAATATTTTATTGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGGGAATATTTTATTGTTGgatgcaaatgaaagaacaaagagaggcgttagaattacaacattttctagaaaacggtaccc
gattctgccagcacttactgagcactgggcggcctctaagcatgggcgataccgcagggactgaagcctgagggcacacacggacagagtctgtgtgtgt
ggcgtctgcacagcgtgctgtggagcacaggaggaggatggggggctggcaaagcgttccctggggcgatgctcaggtgagcagctggtgcctccattga
aggggtgattcacttttttccccttgcttgccagaagtcgagtaataataattatattttctaaacttctgaaaagttgcagacacatcataaacatcct
tagatacacaaggattattggga Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA 491;NA 169;NA NA;NA intergenic
0 chr6 133201814 133201815 1001543 0 - pAlu6-133095237; RIP_Alu_chr6_133_02 NA NA SINE Alu Ya4 aaggtgtttgaattcccaccaattaacttttagcaaggtaaacagatgctaaacatatatctttaataggcccaataaatactattatcaattaatagaa
cccaatcaaaacaacagtaagcaaaacattacactgagaacaaaagtgctaatttactgatatgctagtttaggtcagtgctcattttccagtgtattaa
tttttttcatttattcattcaactaatgcttgcattttcaatatgcaaagccctttgctaggtacaacactaagttaagacattacaataatttcttctt
tatgttcgatccatgagcattgtgcatacttgcaaatacaactgcaagattaatgcacacttatttaaaaaactatgccatggtttAAAGACTGTATTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAGACTGTATTGAtttcctgagtaaccagcccgctctcttcatcatagatgaatgctaacttttctcccaaaagttcctctaccattgcagagttggta
tataaattgcttcccaaatgttgcgatatcgcaggtttatttttttttccttctgtttattttgggtttctctggctatctaagtgtcctctcatttatc
ctacacagatgacttcctctttcgagctctttcttgatacaggtgaaccagtggtggcccatttgtcaatcctattttacaaataaatatcatgcaataa
tcacagcacttgctaaataaatgtaacaatgaaagagattttgggtctggagggtgtactgccaaggaaatagaaaaagtgagttattatcatcaccttt
Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 120609962 120609963 1001544 0 - pAlu6-120503383;1104685230552; RIP_Alu_chr6_120_02 GAAGCCACTTAGGCCATTATC;NA ATGATATTGGCCATACCATC;NA SINE Alu Yb7 aaacacagcctcatccaagaaaatttatgagcttaatacatataattggagttaggtaggttatccagagatctctacaaatcaagctatcaggaattct
ttagttagccatggcaatcatttggaagaaggctatttacaagtattgcttggtcatagaatatgtacattagacattttttttttttttgctggccact
tccaaattccctcactctccccattgagattgtaatcaaccaaattttgtaagttactatttcctactaacaatttaagatatatggcaggaggtgagta
gtatgagataaggtccaagaggaaacatagccagaataatatgaagccacttaggccattatcaagacaatgacatttactttgAAAGAAATTGAGAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAGAAATTGAGAGTCaatacaggggctttactgaagagtgacatgatgtgatttatttatttaaagcagcatattggccaccgtgttaagagtaga
tgtcaggttgatatcacttttcttcctacttcacaaagtgagactagtcaactaattcaataatccagataatgacttgaattgacatgatagcatggta
gatattgagaagtgatagaactttgaatatattttgatggtatggccaatatcattaattaatgattaattaattaatggattagctctatggtgtatga
atgagatctgtattttgagaaaaacagagtcaatgaagcccatgagtattttgtgctaagaagacagaacgatggagtggccatcaattgctgaggaagg
ttg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA 614;NA 311;NA NA;NA intergenic
0 chr6 104879358 104879359 1001545 0 + pAlu6-104772799;1104685081877; RIP_Alu_chr6_104_01 TATCATCCTACGCCAATGAAAGATC;NA GAAACATGTTCATTATCCGC;NA SINE Alu Ya5 caaatcaaacaccctgcctatacatatactgtcttctggattttctaactgatgagccagtagctgaaactgacatacagatcttacagtgtagatatct
gtattacgcaatgaaggacagaggtagagagaagtggggaaaacaaaaaaagcatcagagagacctgtattcctgacatcacaaacctcaagtcctcagg
tggaggttataaaggcaggacccaaatgcctgtcagctgcaacacatacagcaacccaactgtgcaggctggaaaacagcagtgtcacagtagacactgc
agtgagaggcagcccagtagagcacactgcaccagaccagcggctctcagcaggtctctgagtagcatggaatatcatcctacgccaatGAAAGATCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GAAAGAAAGATCATGGgacattggctttgtggttgtagtgaggggatgccatactaggaggcagataacagtttatgcgacaaggaaagcagtgagaacc
gcatgattttcagtggatgccagcacggaggactggccatgctcctggcccaaatatatgaatgtccatgtcagagacaccacatgcacaaataccagaa
ccagatatcctccctgccatccagaggctgtttctacatccagaactaattccagggagaaagaagggagacgaaattctgaattaatatgcggataatg
aacatgtttctttttggccatcaggcaaaatagaggtacaaaatagagaatacagttgttataaatgaataaagtttcagcaggtacctttgagtacatg
acctg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA 637;NA 333;NA NA;NA intergenic
0 chr6 97124403 97124404 1001546 0 - pAlu6-97017829; RIP_Alu_chr6_097_01 NA NA SINE Alu Yb7 taagcaaaaactgaaggaatttgtcaccactcacctggccttaccagaaatgcttaagtgattttcacttacatctggaagtgaaaatcactgtcatgaa
aacacaccaaaagtataaagctcattggtagagcagatatatgaggagaaagagaaaagaatcaaaccttgtcactacagaaaaccaccaaaccacaatg
attaactataagagaaaaagaaaggaacaaaagatatacaagacaacaggaaaacaacaaaatggtggatgttaagtcctcacttatcaataataacctt
ggctgtaaacagactaaattcccaactgaaaagatatagactagctgaatgaattaaaaaaaaaaaagacctaagtatatgctgcctaaAAGAAACTCAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAAACTCACttcacctaaaaagacacatatagaataaaaataagggatggaaaaaaaatccatacaaatggaaaccaaaagcaaggg
agaatagctatacttatatcaggtaaagcagactttaaacaaaaagagacaaggttattttcacttcagcaagaagatgtaacaattgtaaacatacaca
catccaataccacaacatccagatttataaagcaaataattaaacccaaaggagaaatagatttcagtacaattatagctggggacttcaacacccctca
gcattggacagatcattcaggcagaaaattaacaaagaaacatttaatttaaactgcactttagaccaaatgaacctaccagacatttacagaacatttc
attcaacagct Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FHL5:NM:020482:2/7
0 chr6 74398470 74398471 1001547 0 + pAlu6-74291907; RIP_Alu_chr6_074_03 NA NA SINE Alu Yb7 ctttggccaaaaggcactgacacaaggaagcttttcctgtctgccccaggctggctgaggactgccaccttctctgttccaaagatgtcctgtaccttac
agcactgcattatgcaggctatattgtattgaaattctgtccatccatgtctgtctccctctggagaccttgggccccacaggaaccatgttttattttt
ttcctcttattcatttttaagtcctcagctgacaaagaacctaggtcatagtaaagtttcaaaaaaaaatgtttaaagaatgaatgagtagatgctgcac
atttcttgggtccaagatttaaagatgcagcttcacgtaacacatcattttacaacactgtcaactataacgtcatgtgctttAAGAATGCAGTCTGGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATGCAGTCTGGTTGgtacaaggtgactcatgcctgtaatcccagcattttgggagtcttaggcaggaagactcctt
aagcccagcagtttgagaccagcttgatcatcatagcgagactccgtctctacaaaaaataattagctaggcatggtggtgtgcacctgtagtcccagct
actcgagaggctgaggtgggaagactgcttgaacctgtagggttgaggctgcactgagctgtgatggtgccactgtactccagcctgggcactgagctag
actcaaaaaaaaaaaaaaaaaaaaaaggaatgcaatctgggcttctcctcctaactctcttgcctctgaatattcctttttccgaagtgtgtcgagaaac
aacctaagtttggagagatta Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SLC17A5:NM:012434:6/11
0 chr6 68370790 68370791 1001548 0 - pAlu6-68264208;1104685199362; RIP_Alu_chr6_068_02 NA;NA NA;NA SINE Alu Ya5 agccccaaagaaatgctctgttttaagtactagaggcttttgagacaagattcagtttgcaacaatttacctgtttaattttttgcctggtggagtggag
aaaagatataactaactatctttgtacaatttaaaggggaaaaaagtcccattacattattttaatgagataatcttgaataagcccctcctaccagttg
agaatcactgaccgaatagataaaaattaaggtcattttttagatctcatgatttaattttattagagcaaataagacaggacagcactttttcttagtg
aaagttagtacagaaattcaaaatagaaatatataaacactttcttatctattttagattgataaatgtgtatttaaacttAAATGTATATACCAAATCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGTCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATGTATATACCAAATCAaattctagaagtcagttccataaaaaaacaaaataaatatgcatgcataaaattgcacagcttgctaaattatccctatt
taatatcttccacttatgtctgaacaaccaactcataagctatattttcagtagcttttgaagtttaattgaacataagatctaaacacattttaagctt
ttttattgtttaagaataagttctatatggcttgacaggattaaaacaataaactccaatcattctctgaaccagtttggttcagagaatgggtaatttc
tgattgagtttcctttagatgatcaacataatctttcataaatgtcatatgatgaattgttaataaaaaagttacaatgttaacacaattctagaaagaa
t Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr6 91182587 91182588 1001549 0 - pAlu6-91076011; RIP_Alu_chr6_091_02 NA NA SINE Alu Yb7 caagtgttcctaagatagacatgtaaccagcaaagcatcactgcccagagtgcttgaagagctcctacaaataaataggataaagtaaaccccaaagaga
aaccaagcaaataattcacagaagatgaaaacctgaatggctaaaaaacatttaaagagatgctcaccttcaatactaatcacagaaatgcaaagtaaaa
cagtggcaaaatgttcatcatacattactaagtattgggaaggttgtgagggaattagaattctcattcagtcctgatagaagggtaaccattttggaga
gcaatttagtagcacccagaaagttgaagtttgtacaccatacacagattagaaatactaagatacaagtgcacaagaataactacacAATAATATTTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTCGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAATA
AAAAATAAAATAAATAATAATAATAATAATAATAATAATAATATTTTAGgacatattgtcatagaaaaatagtgaagcaacctaaatattcatcaactgg
ggattgaaacataattatgatacattcctagatggaaactatgtagtggtttacatgtgaatgagctagttctacaagcatcaaaataggataagtcttg
gaaacacaatattgaataaaaacagcaaaatactatttatttaaacattttaactaccccaaacagcactacaggcaatattgtttgtggatccatacat
ataccataaaattcaaaggcatgaaaaagaaataagaaccaacttcaagagaatagttagctctggggtggaacaaagagaagattccaattctatctgt
aattttttcatacctttaaaaaatcctacagggcatg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 163110370 163110371 1001550 0 + pAlu6-163023807;1104685087549; RIP_Alu_chr6_163_04 GGACAGACTAAACTTGTAATCTGC;NA AGCTAAGGTAAAGATCGCTGCTCAC;NA SINE Alu Yb7 ttgtatagcactctgtgcttaaccctgttgattaacttcctgtgtcttacaattgcccatttttctgtcttaatccaactctatattgcaaactgagggc
tcccttttcccaccatggtaaatgtggaggcagcttcctggaagaggccttgaggtcacatcacaaacagtaaaacagcatatgggggagaatctcctcg
gaagaggacagactaaacttgtaatctgcacaccttttatttaaaccctctcagtatattaaagtcctccaagaaagacagttgtcatagggagtggtct
agacatagccaacttttcctccatgaaaagaataagcctttattttgttcagccactgggagtttcgaggtggttttttactgctctAAAACCTAACTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCTGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAACCTAACTTAtcctaataccggggacaaacgttatttactctggtgacaaacattatttctattttacaagtgaggataaactgttagggag
gttaaattacttgttcaaagctcatacgtgttgtagcaaggactaagtagtcttaggcatagggctcagctttttaaacctaccttgatggtttttgtgc
ctcgtctatagggatagtattttctactccaaagtatatgccatgatgatccagaggatattgatcatgcactggtaagaagaatgtctctgtataaaca
aatgttggtataatataaacattgataaattgtgagcagcgatctttaccttagctctgaatgtctaaatttcacttggaatttttcagtagatttatat
gaact Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA 853;NA 547;NA NA;NA intron:PACRG:NM:001080378:2/6
0 chr6 131217170 131217171 1001551 0 + pAlu6-131110606;1104685228287; RIP_Alu_chr6_131_01 CTCAAACTTCGTTTCTCAAG;NA TTGGTGACACTCTAAGCGTTACCAG;NA SINE Alu Yb7 cttcccagatctgacagtcaccagcaaaggaaattttttaagagtgagctgcagccagtggggggtggagatgccaaaatgactttgagacactgaggtc
attcctagtcatccttcagattttaaactcaaacttcgtttctcaagtaaactggtttctaaaggaaattggttaaatttatgatagttcaagtctccta
ttttgttctctcatagcattttatttccttcagagggctgatcacatttacattttgttcatttgttaatattcacacctaccttcctggagcacatcct
ctctgccaaggagggggaccatgtttgctttgtctatcacggaatcctcaatacccagccctaccctagcacatttaggcactcattAAATACTTTTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAATACTTTTTGAatgcatgaatgaatctttccaaatttatctagtttgttcaccttatatgtaagtttatactttaacttcctaaatctgtttaa
caaggcttctcataaaagttagcctctgagatgggcaaacttcaaaagttgtgtgtgtgtctgtgtgtgtccattgtaaaaatgaacataaggtgctagg
aataagtgatacaatgaattcatttaaaaacttattaaaatgccacaagtgaaggtggagctactggtaacgcttagagtgtcaccaattttttgctagt
attcctgattaagaagcaactgattcataaaatttagagaaaaaaacatccagtgctattaccttatgtttgtataacactcacttttctcattcattat
ctta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA 857;NA 553;NA NA;NA intron:EPB41L2:NM:001135554:14/15
0 chr6 78420991 78420992 1001552 0 + pAlu6-78314427;1104685406879; RIP_Alu_chr6_078_01 NA;NA NA;NA SINE Alu Yd2 gggccagttttccaatctctgatttacagcatctctgagatttcttactgaacagggagtgttatagataggaatgattgatggctaaaagctccataaa
ggcagagatagacttgttttgttgactgttatatccctgtgtctaccacagtgcctgacaggttggggataattaaatatatctgttgaataaaagagta
aggaatggaatatttgatggaaaattacctaagttaggttaaatggttctatattcagattttcaggttctctgacatgcactgtatggtactgccattt
tggttagagcaaattcagtagaccttccttatctgtgggttctttatccatagattcaaaccaaccacagattgaatatgtttaaaaAATTGAAAACAAT
GGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATTCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCGTCTCTA
CTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA
CGTTGCAGTGAGCCGAGATCCCGCCACTGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATT
GAAAACAATaatacaacactaaaaaaaaaatgaataaaagtactactactgtttattttttatgttcattattataacccttgcattttggaaatacagc
aagatatattgaaatgcaatattttttcgttgataatcaaattgaatttagatgcatctggttgatggaatattgtatatacaacttctctctgctgtcc
ttgtcctttacattgggattttgtagaatgagtcaaattcacattttaatcctctgttcttcagacagtaagtttttgagtaccttaccatctctatgtg
tttaaaacagggtggctagaaaagaagctctttttctttttatttttttgttttgttttagtttttatttttattttttattatattttaagttct Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr6 161126180 161126181 1001553 0 + pAlu6-153704791; RIP_Alu_chr6_153_01 NA NA SINE Alu Sx aactttggaaggtgtcatccccagaccaacaccatagctttttagttttttaattttttattttttaaaaaagagaccagtcttacaggcagagaggttt
tggttgatctggtaaatggatggatcccactgccatatgttcactgttgcaggttttttttttttttttttttttataccataaagtgggtcctttaggt
ttaggcactattctatgggatttcatattcataaatcagatcctctatgagcccttgaatagtgcactgtctcgaaagttgcaggcttggaaattattcc
atacatgaagtaggtatcaatttctataagaaggaattattgctgtatgtatcaaaaacatttctaccatcaagacgatgaatgttaaaaaTAACAATGA
GGCTGGGCACCATGGCTCATGCCTGTAATCCCAGCATGTTGGGAGGCCAACGCAGGCAGATCACTTGAAGTCAGGAGTTTGAGACCATCCTGGCTAACAT
GGTGAAACCCCATCTCTACTAAAAATCCAAAAAATTAGCTGGGCATGGTGGCGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGC
TTGAACCTGGGAGGCGGAGATTGCAGTGAGCTGAGGTCACGCTGTTGCACTCCAACCTGGGCGACAGGGCAAGACTTCATCTCAAAAAAATAAAATAAAG
TAACAATGAGgatctattatgtattgtaaacatttctttcttttgctcatgaacacttctttaaaatccactgacagagcattaacatgaatactaaaat
tcatgtttggattattgaaaccaacaaaacatctcactggtaaattaactgatgtacaaaatcattctgactgtgtcaaccatggaactttaaaacgtct
taacacataaaaagatatgttacttttatactttatactttattatgaatatttaaaagccatatacagaaagaaacacatgcatatgtaatcatacata
gaaagacttgacagcacacatgtccactgcgggtttcttatgaaaaatgccaccttggctaaatgtcaatgcatttatatatcaagtgattttgtaagca
a UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 83331466 83331467 1001554 0 + pAlu6-83224902; RIP_Alu_chr6_083_01 NA NA SINE Alu Yd3a1 cagacttctgtctagaaactgacaagcagattctaaaatacacatgttattgtaagggactcaaaatagccaaaatagtcttgataaaagaaaacatatt
agtataattcacacccccgtgctccaaaccttacggcaaagcatcagtaatcaagacaacacaatactgatgaaggtaaaatatatagattgatggaaga
gaattgagagtccatatataaaactatgtatctatagtcaatggattgttaaagtggtgccatgtgcaattcaatgaggaagagacagtctttgaacaca
ctggatcaacaacgtacacgtgggtcgccacttgcaaaatagtaaattggaacccttaccccaaagcatacaaaaatattaactcaAATGAATTAAAGAC
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAAGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTATTAAAAATAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAATGAATTAAAG
ACatacatgcaagagctaggataaaccatatgcgaaaatcttcaggattttggatctagcaaagaaatagctgtaacaccaaaaacatgagcaacaaaat
aaaaattagatatttaaaatttcttaaaaattaaagacattggtgtttcaaaggacagccaagcaagtcaaaaagcagctcaaaaattatgataaaatat
ttgagaaacaaatatctatatgtctgcatatatatgtatcttgaatatagaaaaattgttttaactcagtaacaaaaatcccaactcaaaactgataaat
gataggaatagatgtgtatcccaagaagatacacgaatggtcaataatcccataaaaagatactcaacagcatcactcatcaggcaac Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 13629245 13629246 1001555 0 + pAlu6-13583805;1104685173713; RIP_Alu_chr6_013_01 NA;NA NA;NA SINE Alu Yb7 tcatcagggaaatggtaacatcacctattggatactagatgatagtaaggaatcattaattttttgtagatctaacaaagatgtggttgctttcttaaaa
ttccttatctcttagagatacatacagaagtatttacctttgaaattatataaagcctgggatttgttttaaaatgacatattagcggtaggagtagagg
ttggaaaggagatatagatgaaactagatcatccatctatcaataactattgaaggccaggcactgtggcttacatctctaatcctatcactttgggagg
ccgaggtgggaggatcacttgagcccaggagttcgagaccagcctggtcaacaaagtgatatccaatctctaaaaaatatatatataaaaAATTAGCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTGCTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATTAGCTGGGgcatggtggctcacacctgtagtcccagctacttgggaggctgagctgggaggattgcttgagcc
ctgggaagtcaaggctgcagtgagctgtgattgcaccactgcactctagcctgggcaacagaatgagaacctgtctcaaaaaaacaaaacaaaacaaaac
aaaaaaaaacaatgaatttctatgtgcaccagaagactaaggccacctttccttgcctaacacagccatggcttatggtcccaagaagcatctaaagcag
gtagcagctccaaagcattggatgctggataaattgaccagtgtgtttgctcttcgtccatccaccagtccccacaagttgagagagtgtctccccctca
tcactttcctaaggaacagacttaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr6 13826457 13826458 1001556 0 - pAlu6-13781007; RIP_Alu_chr6_013_02 NA NA SINE Alu Yd8 ttcagtatacaggagacgatgtaagttacaggcaaattcattttattatccaaatttttatataacatcatgttatataagagacttgggcctctgtgga
ttttgttttccacagttcttgaaaccaatgccctatggatggatacggaggcgacaactgttaatcatctcaccactctgcattagtccagtctcacatt
gctaataaagacatttctgagactgggtaatttataaacgaaagaggtttgactcacagttcagcatggctgaggcggcctcaggaaacttacaaccacg
gtggaaacggacacaagcacatccttcctcacaagacagcagcaaagaaaagtgcagaaaaaaaacaggcagataaagaccgttgtaaaaCCACCAGATC
AGGCCGGGCGCGGTCGTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTTGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGG
TGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACCCACCA
GATCtggtgagacctcactatcatgagaacagcatgaaggtaggtaaccccatgactcaattacctcccactgggtctctcccacgacacatggggatca
tcacaactgtaattcaagatgagatttgggtggggacaccaccaaactgtccaaaactggtgggttcttgttcccactgacttcaagaaaaaccacagac
cctcctggtgactgttaagtttttaaaggtggtgtgtgtctggagtttcttgcttctgatggtcagacatatgcagtctctcctttactggtgggtttgt
ggtctcactggcttcaggagtgaagctgcagactttcgtgacaagcgttatagcttttagaggtggcgcattgaattattccttcttctcctcc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 20995894 20995895 1001557 0 - pAlu6-20950446;1104685176015; RIP_Alu_chr6_020_02 NA;NA NA;NA SINE Alu Ya5 cgggtgcagcaaaccaacatggcacacgtatacatgagtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataatttaaaaaaaaaga
aattatgttccaccaaaaaaaattttttttttaaagattagccaggcatggtggtccacggctatttgggaggctgaggcaggaggatcacttgagctca
ggagttcaaggctgcagtgagctatgatcataccactctactctggcctgtgtgacagaaacagaccctgtctcttaaaacaacaactacaaaaaaagaa
aaaaaggaaagatcttaagcgagtgagttctgacaatcatctactgtgtagctcaaactactctaaagatataaaatactttcctctagaaaGTAATCCT
GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTACAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAAAAAAA
AAAAAAGAAGGTAATCCTatgcacctcatcagacaatctctccctaccctcgtgcctacaagtattcagttttttttctaccacagattatttccagaga
ttcttgtgaatgaaatcatatcttgcactttttttgtgtaatgcttcttttactcagcataatattgttaaattcctgttattgcttaaattggtagttc
gttccttttagtcactaaataatagttcattttgtggataaattccattttgtccattcttctacagataaacacatgggctgtttctaatttttggtgg
ttacgactaaaatagctataaacatgcttatacaagcttttttgtgactaattttgacaaatttctcttagtaaatgagtagaattgctggattacagga
taagtgcatg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:CDKAL1:NM:017774:9/16
0 chr6 24086337 24086338 1001558 0 + pAlu6-24040896;1104685177041; RIP_Alu_chr6_024_01 CTCTGTGAACCAAGTCCAGGGCATG;NA ACAATTGCGAGAACATGCAGGCAGG;NA SINE Alu Yb7 ctagggaatgctgacctgtctgaatgtctcttttctttctcttgatcatctatctttagactcaggaggaccaaaagtaactgaataaacattatcttgt
ccttggccttcaccaagcaaaattgtttatatctgagaccatttccctttagagtctgagatcattattttaaagtagattgtcaaatgctccacagttg
atctcagttcagctctgccatttgctgctctgtgaaccaagtccagggcatgacattaagactgtgactatataacatgagaaaaatgttttaagacaga
ataaaacatcacatacagtttctggcagtgaatcttaacaattgaaatatcgttgtccaaggaaacacttcaagatactgttacagAAAAATGACAACCA
GGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAATGACAACCAtgcctaccccataggcagttgtgagaatttaatgagatgatggatgtgaatgagcacagtgcaataacatgcacagatttt
caataaatggtttgaatcacaatgtaatgaaatgtatttaatccaattcagtatgtgcatttcaggaaatagtgtggctacctgcctgcatgttctcgca
attgtgcactgcctaatttttatctttctccatgtttatactccatcctacaatctgggtcagtcttatatataattaggaaaagaagatgcctgtataa
tgttgcctgatgcatacaaaacaaagtccccaattctgaaacctctcctttttaatgtgatgtagtaaaatttaaatgttagtatccacatcttaagaga
gcatt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA 678;NA 371;NA NA;NA intergenic
0 chr6 19245086 19245087 1001559 0 - pAlu6-19199633;1104685175519; RIP_Alu_chr6_019_01 NA;NA NA;NA SINE Alu Yb7 tatttatagatctaatgaatcaatgcatggtttcaatgacctaatgaatttcttatatccacaaataagacactctcttacttcaaaccatcaaatcagt
atttctcagaactgttttatacatttttattgaaacagattctccattagaaaaaagtgatgtcccctccctcagtgattttgagactcgcacttagctc
cacagtaaagaccttgtacacacagttgatttctctgtgtgtgcatgtgtgtatgcatgctgtctgtatgcaagtgtgtatacattttcaaaatataaac
tacaggcaaaaagtacaatgatcacagatgtacagtatggtaaatttttatatagtgagtatatccatgtaaccagcgctcaaataaaGAAACAGAAACA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAGGAAACAGAAACAGgcacacagaaactccctcatactcccttgcagtcattaagtttccaaagacaaccatcatcttgacttctaatcata
ttaattatgtttttctgcttttaagctatatgtagatgaaatactaaaatatgtacatttttgtgcacggtccaacatttcatttacaagattcatccat
gttgttgtatgcagttgtagtttgttcatgttcattgatgtacagaatttcattgtatcaagattccatagttgctttgtccattctatagtggatgaac
gttttgattgtctccagtttggggctatatgggtaatgctgctatgaacatttatgttctttttgtgaacacattcatgtgtttcaatagggcatatatt
taagagtggaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr6 44003466 44003467 1001560 0 - pAlu6-43896890;1104685507043; RIP_Alu_chr6_044_02 GAGTTCACCTTAGACTAAGAGAAGG;NA AACCCAACTGCTGGCTATATGACC;NA SINE Alu Ya5 agggcaaatctatatccttgtcctttctttgcagagataataaagttaatgggattatttcctgtgtacaagaatagggctgctaagaaaacattgtcaa
gtaaatgctgtttgcaaaggctaaactgaaaggccaaatcttccaccaggaggaagtaaagggtgtgtctacacgggctcacggggagcagtgccaccag
tgacttgatttgcctgagactgacttcccctctgcttcaccgggctctgattcatgcagatggctagagggcagggttgccaggcccatttccctggtct
ccaaggtaccaggtgagctggctagttggttagtctttggaaaaacagagttcaccttagactaagagaaggccccagctgaactttAAAGATTGTCTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCCGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAGATTGTCTGGataactttcctccttgtaaatggagaaactgaggatgcggagggggagctggtctcaggtcacatgaccagttgtagcaaggc
ctggtggggaagtagagacacagagatggaaaataacttgcctgggtcatatagccagcagttgggttgtaggggggaagctgaggcccagagaggagaa
atggcttgccaggctcctacagcctcccagtggcaaagtttgggatggaaccaggtcttcaactcctaggagacagcttgctctgtcatcagcccaagct
cccatcctcccctactacagagacggctcagggaatcactcaggtgtattcctgtttgccgagtctcaatcatccctgactgtgtcgccacacctcgagc
ccag Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA NA;NA 521;NA 217;NA NA;NA intron:LOC100132354:NR:024478:1/2
0 chr6 45368457 45368458 1001561 0 + pAlu6-45261894;1104685506661; RIP_Alu_chr6_045_01 NA;NA NA;NA SINE Alu Ye5 gcataaatctcacaggacctataaaacaaaaatacaattttaaaaaacaaaaacaaaaatacaatttaaaaaacaaaaacaaaatctaatgtatacaggc
aacgaataccatggtgaataaaatggtacctcacatctcaatactaatattgaatgtaaatggcctaaatgttccacttagaagatacagaaatgcagaa
tggatacgtatccaccaaccaattatctgctgccttcaggagactcacctagctaacatataaagactcacacaaacttaaggcagaggggtggaaaaag
acattttatgcaaaaggacaccaaaagcaagcaggagtagctattcttataccagacaaaagaaactttaaagcaacagcagttaaaaAAGACAAGGAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGACAAGGAGGGgacattatataatgataaaaggccttgtccaacaggaaaatatcacaatcctaaaaatacatgcacct
gacactggagttcccaaatttataaaacaattactaacagacctaagaaatgagatagacagcaacacaataatagtgggggacttcaatactccactga
cagcagtagataggtcattaagacagaaagtcaacaaagaaacaatggatttaaactataccttggaacaaatgaacttagcagatatatacagaacatt
ccatccaacaaccacagaatatacattctattcaacaaggtgtggaactttctccaagacagaccacacaatggggcacaaaatgagcctcaataaattt
aagaaaactgaaattatatc Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:SUPT3H:NM:181356:4/13
0 chr6 52037632 52037633 1001562 0 + pAlu6-51931068;1104685505154; RIP_Alu_chr6_052_02 NA;NA NA;NA SINE Alu Yb9 agcagacagatgcccacaagagagaaaaattcatatttaaatgcatcccattgtgccctactctccgaccttgtctaatgctgttgttttgagcatagca
gagcacactctaacgctcctgtcttcttagccagtggacgtgcaactgacccattgaatgaaggcgggcagtttgggggtttcttccagtagctataaca
atatcttgagggcagttatgctttctagaccatggtctcttctggacgccactggccatacagctggctggagctagaagtgcaatgtcactaagcacct
gaataaagctaagagccttcctgaaaggagagccttgacaatggtatcatggacccagggctcactgagtaagccagtcaaatagatgAGAAAGAATTCA
GGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAGAAAGAATTCAaacacttttatttctactcgccagcccatcatgattaaagatattcagagtttattgaacagccctggtggcttccttacct
ggctgaggggtggtgagcctcacatcttttcctggagcccgagtggtgcactcaatcttcctgggagacacgtgtctaatatcacatggaatgcctaaag
cgaattaaagaaatttatgtatgtgtgtgtgtgtaggtatacatatatatgtatatgtgtgtgggtatatgtataattatatatatatatatatatatat
atatatatatatagagagagagagagagagagagagagagacagagagagagagaggcagtcgggagatgtgatggcaagaccagactgaagtagacagg
ctccta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:PKHD1:NM:170724:13/61
0 chr7 45742353 45742656 1001563 0 - pAlu7-45482912; RIP_Alu_chr7_045_01 NA NA SINE Alu Ya5 tcttgccgtttatttatgacagaacacacgcaggacttgaaagatgttactaataatgtccactacgagaactatggaatcagaaaactggcagctgtga
cttatcatggagttgataacaagaagaataaagggcagctcactaagtaagtatatatttttttctccaaaaaaaggtattctttctgtagtcagtaatc
atattgtttcattttcattaaatttctcctggctactcagtagaaaatttggataacattctctatgcataacagcataaatttatattgttatgctttg
ttaatagtagaagcttttttgaatgaaccattttgataagagttttcacttacagattgtgtggaaacaaaggacaggctttAAGAAAAGGAATATTTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAGAAAAGGAATATTTAGatgaatttattcttggttaccttctctattcctattccagggagtaaattagctggagtttcagtttcttcttttggt
tgttagactggtgtaagtgactacgaagtgtgtagctttgccctattgagcttatatctcaagctgtggtggtttcatgttggagtcaaaaaaagagatg
tgtgaggaagctggtaaccatgtctgtgccctacttttaaaaaatttgtcattattgaagatcacaattacatcatatgtcacttagcaatggggataca
ttctgggaaatgtgtcattgggctatttcatcattctgtaaacatgattgagtgtacctacataaacctagatggtagagccttctgcacacctaggtta
tgtg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SEPT13:NR:024271:9/13
0 chr7 46068704 46068705 1001564 0 - pAlu7-45808944;1104685593638; RIP_Alu_chr7_045_02 NA;NA NA;NA SINE Alu Ya5 atacataacttttacaatacaatggaacaactgcacatcaatttggcactttcaaatgcgaaaataagaaaataaacatttaggtagatgagtggccagt
tatcagaatcaaagatacatgaatgttcatgcatgctacattgaaacttcattgactcttggtttaataagaattcatgggaactattctggagaaaaac
tattgtctttacttgagaaaagattagaaacttttgaagtagaacttgaagcagatgttgttgtgtggtaagcagtgtctaagatagcttccagtgatcc
ccttcctttgagggtgggccagatttggtgacctgctttaaaccaatggcccatgtgatgagtggtcactcccaaaaagaggttatAAAAAAACAGACTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAACCAGACTTtcagttttgggttgtctttcttgctctctcttggatcactagctctggggaagccagctgccatgctgtgagggaatcctgtgcaaag
gcaccatgtgggtgaccctagaagcgcatcttctgaggctgccaacaagtacatgagtgagcttggaagcaggtcctctcccagttgagccttaagatgc
ctcccctcccacccagccaacaacttgactgcagccccttgacagacttgagccagaaccacttagaacacagaaactgtgagataattaaatttttttt
taactgttaggttttggagtaatttgttacacagtcatagcttactaacactgattaccagcacaatcacagacaaattcagaaagttatcactgatg Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr7 57790392 57790691 1001565 0 - pAlu7-57526665; RIP_Alu_chr7_057_02 NA NA SINE Alu Yb7 ggcagatatagacttctcagggacacctgggcactgcccctgcctttacacatttgtcaggtatattggctcatgggttcattctctttatcagagaaag
attacaggtttctcgtatagacaccaaaagatcaggtgatatattattgaaagttcactgcctattatagtctgagtaatataaaaaaataatggcatat
ggatggtctgaaggcaatattagtttcttctactaggtagggaaggaggtgtctttctctttttgtgaatttgggcctttgttgtaaattgggagttgac
atatttctgaaacataagggaaaaccacatccaaccagaacctaaccttttaatccatccaagagtttacttaattcacccaattAAAATATGGATTCTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAATATGGATTCTCtgcaatacctgttcataatctctttagtccatattttctccattatgtccaactcccaccattcagctgttgatttatggtgaga
gctatttttaagattgtagaattaattactgaaaataactctacagactcataaaattcatattcacctctgcattccagtgatcagaaaaaatatgggg
cgtatttccaaatataactccttcactgtctcttttcaaagggcataacagagtgacagaattgaaggaagagggcagataatttaaaaatattatatag
gggggcacctcttgaaaaggaagcctaatatcctacaggaaggctctggccctaggttttcatctgtaaatcatagttactctaactcttgtagttacta
UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 64290564 64290866 1001566 0 + pAlu7-64051017; RIP_Alu_chr7_064_01 NA NA SINE Alu Yb7 ctgatactctagtaatccactaaaaagttgagggtgtcctgggctcccctgggagtgccgtgggcttgggctggacaggtcgtggggagaatgctgggta
ggtgggtgcagctgcagccacaggggagccagagtgtgcagcatgtgtccagcgtgagcctcccgagcttccacctgggtcacatagtctttgtgcccct
gggaagcctctagaagccacacagaggcccatagcaactctcatgccctggagtgtctcaccagccactccagtgatgggccctccagtggctctgggac
ccaaacagggatgattcacaaagtccctaccgagcacaggccttcacagttcaacaagaaaatcctactgttgactggatttttAAAAATCAGTGGAGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATCAGTGGAGGAGgatcacactagaaatgatagatactgcaagaaacaaagcttgagtgaaagcttgttaccgtaatgaatggactcacacat
atcactgctttgcagtgatagcatcagccaaaagggctgcgaacatgaatcattaacaagttgaaatatgtcaaagatggctgtgtggtgtgaagaagct
gcatcagctgcacaggctaagcctaaatgatattccaaatggcagagtgtccacctgaataccatcactgtaatcagtaacaataaaagatagggaaaac
tgaattatttttaaggttgaaatgattttagcatgacagtttgttctcttgccaccgtacattgaatcatatacttgatgtttattgtgtgcctgtgatg
tgcc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:INTS4L1:NR:027393:9/14
0 chr7 71722281 71722585 1001567 0 + pAlu7-71482659; RIP_Alu_chr7_071_01 NA NA SINE Alu Yb7 ttgctgacgtcacagcccgaatttccaccacatttcatactaactccccctaaatttgcatatgcaaaccacgagcaaggatgatcaaacagacaactgc
gcatgtccgaggactttccagatctcccctttccttccaccaatcacttactaatctgagaatccatcccctaataaaatcactgccttaaaacctgcac
aggaagacaaatttgagctggacttagtgtctctttattagtcgacttgcaataaaaaagctttcttttcccccctcaaaaaccctatgtcaattagtat
tggcttccagagcatcaggcagtgagccccttttgctcagtaacagagcttaaggtgaataaaaaaggaaaataatgatatggttcAAGAAATCATTACG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAGAAATCATTACGaaagcatggctgaaaaactgctagccttaccaagtgcataaaaaacatgaaaattatttattgataagcattagtcataaa
agtgtactctatctcaatttaaatactgcttatgtgtggattacacaaacaaccatgtatgcagtagctacttcaaaggactttctttttaatatttaaa
aagttagttcactgaatcagagttgttagataagatcttgtcttcgtgagaacagcttttgaaaatattttaatattttattactcagcaaaaatagcca
tgaaacactgaggggagatttagtttgggaatggaatgagagaatgcctgctgcggttcattatcatgactccacccattccttacaactctatgatgct
ttatg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TYW1B:NM:001145441:10/12
0 chr7 76314152 76314469 1001568 0 - pAlu7-76074821; RIP_Alu_chr7_076_02 NA NA SINE Alu Ya5 cagaaacattaaaagtgaacttcgcaatttccttaaaaaatagttgagactgtggagaaacaaaaattagttggaacttagtgaactgaagaactgaact
tcagtgaactgaagaaacaaattccactctgggtagatcgacttcctaatgtcacaagtcaatttagaaattatgtacaagataaatctcttttctctca
ttgcaccaatgtatttatcttaatcacaagcatcagtggagacagagactgaaaaataaattgttcactgtctccaagacaaaccccaaataggaaactt
gatattctgccgaaagtctatctctggaatatgctttggaaaagccatggtataattatatgtagtattatagagattcttgtgtgtatAAATATTTTCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAA
CGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATATTTTCAaaagcctttgaaattgtttgtaaatccaaagtttataaatgacttatgaaatccacaaatttgctaaatat
gtttctgcatttttgtattatgctctctgatttttctttctatgtggtgtaagtcaaagaaaatgatatacaatatggctagatgggactaaaatctcca
aacaaaagaagcatctgtttttctaatttagtttttgaatttatgttggtttcacaattggttacactgcaaacaatgtggttcaaatgacaatgacact
gattacaattctactttgcactaagagtgctttttattcaagattgtcaactcccataactaacaataactaagcctttcagcacctctgtaccttgggt
attgttttacccaatgtg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 98035734 98035735 1001569 0 - pAlu7-97795382; RIP_Alu_chr7_097_01 NA NA SINE Alu Ya5 gcaaatatttcaaaaccttacactgcatcaagatgggacatttcttaaaaattgcttccccaggacaagaagtagtggcccacacctgtaatcccagcac
tttgggaggccaaggcaggaggattgcttgaagccaggggttcaagaccagcctgggcaacatagagagaccccatctctaaagaaacaaaaattagcca
agtgtggtgacacattacctgtaatcctagctactcaggaggctgaagtgggaggatcgcttgagcccaggagtttgaggctgcagtgattcctgatcat
gctactgcactccagcctgggcaacagagcaagaccctgtctcaaaaacaaaacaaacaaacaaaaagcttcctcagacaacatagaaacaGAAAAATAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
GGAAACCCCGTCTCTACTTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGAGGCGGAAAAATAAGGgggcctctcactactcttttcagatgtatcttccagactgcggctcccattgtcaggggagtcattttgtttctgta
atgcatgtgtcatcttttacttctagatagcgttttggggtagggaaaggagttgggcagaaataaagatgtctaggcgccttttgttctgtgcagacac
atgcctgagaacttttcagtgccaaataaaaggagagtctttctggtcacaagaggagtctaataatttagttaagcctacaaagcaagttccttatccg
actgtcttttatgataattgctgcagtgtctggccctgatgggagagaaactacagcccagacccaatgtcctaatgacctggggatggcgggcttcaca
gagaaaaagacaaa Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 154013214 154013215 1001570 0 - pAlu7-153697150;1104685097439; RIP_Alu_chr7_153_01 NA;NA NA;NA SINE Alu Yb7 gtccagtgggtgacactgactgtggccatctcattccttgtcgaggccatcattatgggctgagatacagtggatcacttactcgcagaatatatttttt
ggtttgagtaaaaaatagtatcggctgggcgtggtggctcatgcctgtaatttcagcactttgggaggccaaggtgagcggatcacctgaggtcgggagt
tcgagaccagcctgaccaacatggagaaaccccgtctctactaaacatacaaaattagccgggtgtggtggcacatgcctgtaatcccagctactcgaga
ggctgaggcaggagaatcgtttgaacctgggaggtggaggtttcagtgagccacgactgagccattgcactccagcctgggcaacAAGAGTTAAACTCCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAGTTAAACTCCAtatcaaacaacagcaacaaaaaaatagtatctaccttattagtaaacaaaggcatattttttagctt
agctcttctacttcaaatgcaaacataacacggacctacccgctgctgagaacgcattaaatgttacaatactgagaggttctaaaaagacactagaaat
tatgtgtaaggctgtaggagatgtaaaagcataaaaaaataagtttcagaagaccaggttgtaatttttgaataataaaaaatagatttcgatgtacagg
ttggtttcgcatcatctctaccccaaggtgctttcttgggattgaaacggctagagatgctcccctgggccattctgccaaacaagtgaccatccctgct
atcactgcagggtcatct Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:DPP6:NM:001039350:5/26
0 chr7 154489153 154489154 1001571 0 - pAlu7-154173091; RIP_Alu_chr7_154_02 NA NA SINE Alu Y aagacaagacaagcaagaaaagaagtctcaagtttgttagagtcctctgtaaaatacgtgtgctccaagatgtgagaaataattttgtctttgaagaatc
ggaccccaacaacgtcattgatgatgttagggcttcagtggcctggagtgtaacagggtattcctttcattataaaaatatacgtattgcatctggtacc
tcccccgctggaaaggaaacctaatacttggtcagcactttgaatgccagaggcagctgctctgattcacatcctggtgatgtggaaaggctgccaggtt
cggttggggctaagagcaggaaatggctctagcagaagtcctggctgcagtgaaagcagcccaactgcttgggctttatgatttgcaAAGCTTATGTTAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGCTTATGTTACtaggagtacctgtaatgggaaaaaactccatgaggattttatgataaacaccagcaaaagagtcacagtatagaccctga
gggttctggaggaaagtcactccgtctacaacaggaaacattacactgttggaaaagcagtttgtgtgagccagggctctggcagaaatagagcatctga
gcatgagacattaagtgacactggaacaaaatataaccatcaagatgtggaattttgcagacccacctacaagattgggtgggctcagcagcaaaacagc
ataaaacagaagtggtgcagagcagagctggagggtgcaagccagctccacaagaggtggcccagaccaccctgctgtctgtcatcactgtacaagcacc
tacccct Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 64274258 64274554 1001572 0 - pAlu7-64545854; RIP_Alu_chr7_064_02 NA NA SINE Alu Ya4 tgaagatatgtcggccaggcatgtcacgcctgtaatcccagcactttgagaggccaaggcaggaggatcacttgagcccaggagttcaacaccagcctgg
gcaacatagtgagaccccatctctataaaaaaagttaattaaaaataaataaataatatgtcacagattccccatgggtacagagcagagaaaaggaatc
tactatactatattttaaaaaagactgatcctcagcatctgcacatgtataattgggtccagacttagctacctattaggtttgtacttagtactaaaga
cacaaagatgaacaaaagcaagactatcccccaggcttacaaataagaacagttaattgcattacagagtgatgactgttgccatgGAAAAGCACAGGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGG
TGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGT
GAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCGCCCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAA
AAGCACAGGGAatgtaagaaaatgcatatgaagaaatatagcccaatcaatgggatcagaggtggctttctgtaatacgtgatccctaaaaacaataact
aaaagagctgctaagccaaaagaaagaaaaaggcctttctagaagaaaagctgcatgcacaaagtcccaaaaaggagagagaagatggataaattagaag
actagaagtatgtgaggcactacactagagtgaacagccagcgaaataaggctccatttcattcccagcaatgcacccctaaaacccaaattttcccaga
attgtataaatgtgataaaattagaaagctgtcatacctgatacctggttatggtatactcactttttaaacttaagttaatttgattacatcttaa UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:INTS4L1:NR:027393:4/14
0 chr7 128944414 128944415 1001573 0 + pAlu7-128696390; RIP_Alu_chr7_128_01 NA NA SINE Alu Sx ctgacctcgtgatccgcccacctcagcctcccaaagtgctgcgattacaggcgtgagccaccgcgcccagccagtgccacatacttttaaacaactagat
ctggaaagaactcactatctcgagaacagcaccaatccatgcaggatccatccccatgacccaaacacctccaccaggccgcacctccaacactggggat
tacaattccacatgagatttgggcagggacaaatataagcagtgataggtacgtccacatacaggtcatgagggctacctggaggaggcaacagctgaag
tgaaggccttgctgtgaagctatgggggctttttatgaggaaggctctatgcaagggtgaggatggatatggggcttgatggttAGAAAGTGGGAGAGAA
GGCCAGGTGCAGTGGCTCACACCTGTATTCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTCCAGACCAGCCTGGCTAACAT
GGTGAAACCCCATCTCTACTAAAAATAAAAAAATTAGCCAGGCATGGTGGCGTACACCTGTAATCCCAGCTACTCAGGAGGCCGAGGCAGAAGAATTGCT
TGTACCTGGGAGGTAGATGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCGACAGGAGGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA
AAAAAGAAAGTGGGAGAGAAGGgggaacggtgactgcaggaatagaaaaaatgtccacagaggaggaaggaggacatggcagtcacatgtggatggggaa
ttttccattacaaatctgatgatagaatccaaagagacagtgacaagtgtcagcgagggtgggaaaaattgcaaccctcatgcgttgctggtggggatat
aaaatggagccgctgtggaagacagtttggcagccactcagaacgtaagtagagttaccatacagctcagcaattctactcccaggtacacgcccagaga
actgaacacacggtcacacaacatcttgtacataagccaagtacagcggtgctcgcctatagtcccagctactcaggaggctgaggccagagggtatctt
gaaccc Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 25228578 25228579 1001574 0 - pAlu8-24993188; RIP_Alu_chr8_025_01 NA NA SINE Alu Ya5 agtgcttgagctcctactctgcagcaggcgtgtgctgggtgtctgggtggcgatggtgagccactcaccagccttgccccaactcaggttacagtctggt
gccagagagaagcaccagtcaaataatctgcacaagtaaacccaccattagcaatggaggaatgtgccaggctctgtgaatgcacaataccaggtcctga
cctcgtctgcagggtatgggaatctttcctttcagctgttagcacagtcagggagagtggcctgtgcaaaggcccagaggtaggagacaacctgactgac
atcctcacagtgagggggtgtctggtgtgagatgaggctgtagagacagatataagtcagatccccctgaggccggtgggcaaattAAGAATTTTTATAT
GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGG
CGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAGAATTTTTATATttaccctcaacataaatgaaagtcagtaagatgttttcagcgagggaggagcgggatgagatcaggtgtgcttacagaatagaac
attcaggatgcagtaaggagaagagaaaatgagcaaagaaagaacagaaacatgaaaaccaggtaggaagctacggcagttgtccagggaagaggtcatc
gtagctccaatttgggtagtgacaatgcagatggagagaagggagagagagacttgagagtcctttcaaaggtaatgctgacaggtcttatctactaatt
tatgtgagttataaaggaaaaggagatatcaagggtgactttctggcttcttgcttgtgcagtggatggataggtgggtggatggatgggtgggtgggtg
g Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DOCK5:NM:024940:13/52
0 chr8 16147194 16147195 1001575 0 - pAlu8-15877999;1104685163697; RIP_Alu_chr8_016_01 NA;NA NA;NA SINE Alu Ya5a2 aatcttctctgctttcttttcttagtttattctcttacatttcaatatttttaataaaaataaattttatttacaaaggtaaaggataattactggtgaa
aattcatcctacaaataaaagaagaaagaagaaagttaagatttattttaaacctacaatgcaaggcaaatattataagcatttgggtcaacataatttc
agatattagctacatatccatctacctgtatctctacctacgtatctacaaaaatcgtaatggttatgaaccctcttttaaagtaacaactaggcttttt
tcactaactatatgccaagaaaatgttacatgccaataagtgtacgcatacatacaacacatgtacatatgcttatatatttttAAGAATCCATAATATG
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA
TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAATCCATAATATGtatacacacatatatgtaaggata
tatatgaacacagagacatatattgcctttttaatgactggatattttatttttattatgttaactaaaatatgtaataattatgtaataatgtatataa
tagagtttaataataaatcatctctatgcccaaaacactcctaaaaaataaattactatttatgatgccccaaattgggaatcaaccaaaatgttcttca
gcaggtgaatggataaacaaactgtggtcactcatacaatggaatattatttcgtgataaaaaccaatgagctatcaagtcacaaaaagacatgggggaa
ctgtaaatgcatattgctaagtaagaaaagccaatctgtctacacactgtattgttttaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr8 6032386 6032387 1001576 0 + pAlu8-6195558;1104685046690; RIP_Alu_chr8_006_01 NA;NA NA;NA SINE Alu Y caatatttgtgaagagacatttcatttaattacattagacaaggagatggtctcgacttggaaatgctcaggaaataaacttttcaatgtaatttcccac
tggagagtatacacataataaagtcattgacttcagctagcactaatcagtattaatgccttcaatcattgccatcaatagctatcttggagaatcacaa
aatttaactgccttcctacagtggaggcataaacggatacgggtccccttgtaggaagaggaccaggagctgcaccaatggctgtgtttcctcctcgatg
accttcccatgaatgaatgtgtcccccttggatactgccatccactcaccagccgtccattagttcttcagaagtattgatcAATATGCAACACTTAAGG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AATATGCAACACTTAAGGtttcaaacaacacttaaatgcaatttttgaaggtatctcaaggtgggccttggtaaatggtaacttttcaaaggttgcctga
agccataacaacagggggagcacagcatgctgcctttccctgtcaaaggacatgagccttattatctcagcaatatcccaaagcacctcacaagtctggg
aaaaaaatttcaaaacagcaagcaattttcagccccaaactgcacaaattaaagcatttctctctgctctgaacttattcagtctcagtacagatatgtt
aaatgaactgacataagaagtaaaatgaaaattaaattaaatttgccttttccctgcagggaacactacccataaataaaatgctgcgaacccaaccgtt
Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr8 75537902 75537903 1001577 0 + pAlu8-75098532;1104685425738; RIP_Alu_chr8_075_01 NA;NA NA;NA SINE Alu Ya3 tttgacacagaaaccactaagaagagggtaaaacaaaaattgggaatgagaatcctagaattttttttatacttgaatgatttcaaaagatatgccagca
tttaaacaagcctttaagaatctagtagattagaaagcatttgagtgatgaagtgacaaggacgtaagttgaaatcaatacaaatacaaaacctgatgaa
ttgtttcattcagaagagatcaaattattaaaagatcaagtgcaaagggaaaagtttatagatattaatgtgttctgataaactaagaaccagacagtac
atgaaagcttagctttagggtggatgacattgcaagtgatatgtaattaaggcaataagttacggcaaatgagtaaataacatttctAAGATTGATCCTC
GGCCGGGCGCGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATGCAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAGAAAGATTGATCCTCagttgtgggctgaaacaaattgatgtagcacagtaagcatgacttcaagaatattttaggataggtgtggtggcttatgc
ctataatcccagcactttgggaggccaaggtagaaggattgcttgagcctaggaatttgagaccagccttaggaacatagggagaccccatatttattaa
aaaaataaaaaaataaattagcgggatgtggtattgtgcacttgtggtcccagctactcagaagggtgatatatgaggattgctgcttgagcccgggagt
tctaggctgcggtgagctatgattacaccactgcactccagcttgggtgacagagcgagaccctgtctcaaaaaaaaaacaaaaatagtattttaacaga
ggtgcta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr8 124749365 124749366 1001578 0 + pAlu8-124348981;1104685370895; RIP_Alu_chr8_124_01 NA;NA NA;NA SINE Alu Ya5 agaatttgttaccaaaacaccaggagttttgtctaagttctgttgcttgacacccagaaagccaatcactgagaagacgactgttgccagggaagaaggc
tttaatcgggtgctgcagctgaggaggtgggagatagagtcttgagtccatctactcaagcacctaaaatcaggggtttgtatagcacggcagaaatgta
accatgtatgggaaaacagaaattaggaaggagtgaggaagaggagttggtcaacaggaagcaggtggtcagatagggaatcatgatgggtgagggtctg
gtgtctctttgcccagatgtgatggtcttataatttcagctcctcgatattatcttgggagagggggtgatgactgggttcctgagAAAAGAACTCAGGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAACTCAGGTaagacaactgtaactttctcaaattttaagacttcgggatcaatttttatgtttattcaaaagaaaccataaacat
cagttctagggagacaattgggctggtttcaaattgctgtgtgtgttgtgactggaaggatgcataagacatggttcttggcctcacagagctcctggtc
tcattagggatatggatatagagaatgacaaagaaaaatacggtaagtgctgtgatgggattgtgtgaaacgaacacacagaaggggtgacactaactgc
acaggagagggggcaggcaagtcttgccttctaagagatggtgaggcttgagctgccactgaaaggaaatgtggaagtcaagggataaatttggctggag
aaagggagga Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr8 125959152 125959153 1001579 0 - pAlu8-125558756;1104685371220; RIP_Alu_chr8_125_01 NA;NA NA;NA SINE Alu Ya5a2 ttgatcagtctggctaaccttttactcttctacctttttctaggcattaagaagcatacattagagatttgtcagtctcattttctttcttctcatcctg
ctagcagggccttagagacaataacagcaatcacacttatgcagctttcaccatcaaccatgccctggaccagctgctctacgtgtagtatctcatttaa
ttctccccaataaggtagctaagtatgattatgatcccattttatggctgaggaaaccaagattcgggaagctcaagtggttttcccaaagtcacagaac
tggtgagacatggagctgctgtgatccgtgtacatttcattgcttcctttcctcttaaatgattctctcaagctatgaaatgtctatAAGATCAGAAGAA
CAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAA
ATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCGGGGAGGCGGAGCTTGCAGTGAGCCG
AGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAGAAAAAAAAAAAAAAAAAAAAAAGATCAGAAGAAatggaaggagaagca
agaggctgaataatcctcaaaagaagataattaactcttagatggatgagaactatctgcatgtttttatactttttaaactctctctggaagcatctca
ccaagagtgtcattagagtttattcattatggagtcttctaattcattagatttcagttcatttttgctgacatagatttcacatccccagtgtttaaaa
caccaggcgaggatccagaagtgagaatgctgtggacataaagatgaacactttaaatatcagtctgtacagaactcccacatggtggggggccaagact
attcatatcccaccactagacaaagaaatcctagtggggccaggatagtgctctgagagcacaccgcagaaa Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr8 139395162 139395163 1001580 0 + pAlu8-139010376;1104685071563; RIP_Alu_chr8_139_01 NA;NA NA;NA SINE Alu Y ggccaggctggtctcgaactcctgacctcaggcaatccacctgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctaaaa
catattctaaacacagaattaagcaaagagtttttagacttggtacagagaacatgaaccataaaagaaaaacataataaattttgtttgtttgtttgct
tgtttgtttattttgagagatgaggtcttgctatgtcgcccaggctggcatcaaactcctggtctcaagtgatcctcccacttcggctccccaaagtgct
gggattacaggtgtgaggcactgtaccccgcagataaattttagttcattaaaactaaacacttttgtgctatgaaagacactgttAAGATACAAGCTAC
GGCCGGGCGCGGTGGCTCGTGCCTGTAATCCTAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGG
TGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGATACAAGCTACaatgtgggaaaaaatagttgcaaatcacatgcagtggacctcagtatctgtgtattctgtatttgggaatttgtttactcaaaaaaa
tttgttttagccccaaatgcaacactcacagcacctttgtggtcattcacagacatgaacacagtggtaaaaagtttgaatcttctgacactcgggtgcc
caactgaggttaagcaatactaaaaacaagtatcccttttgcaatttatttagtctcacatatttgtgtactctttgctttttgttggtgttccactgtt
tgagatggaccccaggcatagtactaaagggctgtctagtgttcctaagggcaggaatgctgtgatgtgccccatggagaaaggatgtgtgttagatga Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intron:FAM135B:NM:015912:2/20
0 chr9 2341304 2341305 1001581 0 + pAlu9-2341303;1104685690672; RIP_Alu_chr9_002_01 NA;NA NA;NA SINE Alu Y gttttaggcttcagaattattagaaacattttttcttatgggtcctacatatttttattaatgtaattcttttttacattttatttatttataaaattat
ttatgtaattttattaatgtaatgtagtcttggttgctatattgatgtggtcttttcttacattatatcatctatgtggttattgcttatatgtacatat
gtatgggtgtgtatgaaagctaatgtttttatctattatttctatacccctaatacctttctgaattctcttactgattgtaatagcttttcagttagtt
ttcttgttttccaagtatgtagtcatagcctctgtaaataatagtattttttcctttctcttttctaactcttttcataactctAAGAATTATGATTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCTCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AGAATTATGATTTCTttctcttccccaattttgttggctatgacttactagtacatgtcaagttctatttctgactataatgggactattttagtgcttc
ccattaaacataatgctagttttggggttatgactgaattacttgattttgctatagatttgatttgtctaacattattttgttgcaatttaaaaaaatt
aagaatgaatattgtattttgtctggtgacgtcatttaatacatttccccccatgcttatataatctcaaacacagggggtttgtcattgacttatagaa
attgttttgtgttatatacacctacgtttatcttattgctcattatataatacttcgtggaattttttttttccaaattagatttagctcattgtttta Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr9 103249818 103249819 1001582 0 + pAlu9-97667445;1104685433208; RIP_Alu_chr9_101_01 NA;NA NA;NA SINE Alu Yb9 attactttactaaacgtataaatccaatttataccacaagttttggtaactctggttttgccatttcttcacttttattatatttactggaaacttaaaa
gtatggaagtagcctgtgtgtcccttggcctttgaaaggccctgtctttcacttatcttgattgtttatatacatatgtatcttatatatgaatcacaca
cacacttactatatatatatatatatatatatatgcacacaaatatctttattccacagcaaaggaaaataaacttggccttaagttccctaatgattta
gcaaacaatcactgcaaagaaatattaggggaggattgcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatcAAGAATGAGAACCTT
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAG
CTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AATGAGAACCTTatatgcttgtgcctacacctttcctactggaatcattttggaggaatagcacttgtgtgcttttggtatgaaatattaggggaggatt
gcttgaagaagatgcagtccatctagtttgaatgatctcagaggtatcaagaatgagaaccttatatgcttgtgcctacacctttcctactggaatcatt
ttggaggaatagcacttgcgtgcttttggtatgacaccatctgatttgtctgaaggtcatgatcagaaaaaagtctgttcaacttacccttgggctgttg
tccagtaatctcttcataggctatgctctttatgaagtgctcagagatccccgtctgattagaaaattaagaatagttgtgctattcttaacactgt Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr9 102742721 102742722 1001583 0 - pAlu9-97160342;1104685433313; RIP_Alu_chr9_100_01 NA;NA NA;NA SINE Alu Yd2 agaataaatgaatttatactttaaaagagaaaggaaaggaaaaataaattttccatcttttcttcatttatgcaagctttgattggatttcaaaggcctc
cacttaaaaaaatcattgactccctgggtttaagggattattgtctgtggaatttttaattactttttgaagcaaaaagataattggattgaggatttga
ccaataaaagagaaactgatttgatttttaatttttgggattttaattaaaatctatagtccctatctagttagtatctgatacattttggctcaaaggg
tcactcttcctcccatgtataaagtcagtcacatgagcacatatacctctttagacttttctatactatatagtaaatatgtccattaAATGAAGAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGGTGAAACCCCGTCTCTACT
AAAAATACAAAAAATTACCCGGGCCCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGC
TTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAATGAAGAAATAaatacatgacagcttaaggtttggaagctgtgagtggcagtgtttaaatgtctggactctcaagtcaaatgtcataattcac
atgccatgctcatttcaatcactctttgtcactgtcaaatagattttactgtgcagggccctaaactatatgggcactacagggacaaaaagataccagt
ctacataaaaccacactgttgtctttccaagtgtacctgtatctatccttctatagcctgcctaattctttatttaaattttaccattatttatatttat
gtaaatattatttatattcctgttttaagcctcttcagatacttaacaaacacacaccaaaccaaccaacctacaaggtatttatgtttctcaagatttt
aaagac Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chr9 95411207 95411208 1001584 0 - pAlu9-89670507; RIP_Alu_chr9_093_02 NA NA SINE Alu Yc1 cagacaaacaacagttcagaaaatttgtcaccagtaaatctgccttgcaagaaatgttaaaagaacttcagagagaaggaaaatgatatagatcagaaat
tagaatctgtagaaagaaagggagagtattagggaagtaacaagtgaggataaaataaaaacttttttcttattcttgatctagcagacaagtttgttca
ccaataataatagcaacaatgtacttcatgactacttcatgactacagtttatgagtaagtgaataacaataatatttcaaggtatgggagggaacaatt
aggaatactatttcttgctctacccatagagtgctaagtatttgaaagaggacttggattagtcataaacgtatatcgcacattttaaAACAACCACTAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAACCACCCACTAAaaaaaaagttttttaaaaaagcgttattgatatgctgagaggagaaaaaaatgggatcacatcgaatgctcaattaaagcc
agagaaggcataaaaaagattagacaaaaagaaaaaaacaaaacaaataacaggagcaataaacaggaaacagtaacaaatacggtatatattaatccaa
ctacacaaataaccactttaaatatcaatggtcctaaatataacaactaaaaagcagacactgttagagtggattaaaaaacaaataaataaaatttaaa
aaaacaaggaccaactatgttgtctaacagaaaccaacttaaaatataaagacacagattaaaagtaaaaggatgaaacaacactatgcccacaaattca
atagcct Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PHF2:NM:005392:1/22
0 chr9 96354079 96354080 1001585 0 + pAlu9-90613390;1104685436380; RIP_Alu_chr9_094_02 NA;NA NA;NA SINE Alu Ya5 tattaaacctataaataaagggctatatgaggttaaacgtattcaaatttctatatggtttaaaacattgaggaaatgtattgacaaacaaacttaagaa
actgcaaccaatctactctggacaaaaatttagatactatctcttcaaaataagctatctagtggtatttacacacattcttccatatatcaacagtatt
tcacatgctcataaccttaaaaataactgaaaagtgtcagaattataggccttacacatttctgtgggcttgaaaaatgatacaatatagattgtcttta
aggcagctaagaaaatgcataaacttctagagtaatcagtttaaaaaaaaaaagagttcataccaaaggtagtaatactacgattAAAAGAGAGCTCAAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAGAGCTCAACactgcaggttcttaaaggcaaaagttaataaagccttgtttttggtagtgaatctctgccttgcaaaattatacacatgatt
ctccccccttcatttgcctcttgcaaaaatgtggtgatgaaccaggtttgctcatgcagatgatgatactccttcaaaatggttgcagagaaataaaatg
aagggaatatggttcacttaataatctcataaattagaacttattaccccagtgactcttacatagctccagacaaatatttgagagagatgaaatggcc
ttttgctaccaatatcttatgtgatgcttcactttttggttccttggataactacttacaactcattagcccatttatgccagaggttgcaattttttga
att Other;Venter - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA;NA NA;NA NA;NA NA;NA NA;NA intergenic
0 chrX 2741992 2741993 1001586 0 - pAluX-2262053; RIP_Alu_chrX_002_01 NA NA SINE Alu Yc1 aaaaaaaagtctattaaacaaagtaaaagaaaaccaagatccaactctatgttgttacaagagacgcttgctatatatttagagcaagaatatttagcag
aaggaagattagaacagaaaaaaatacagcagaaatgaagttgcacatcttaaatatatacaatgtttgtttattatgctttaaaaaaatctagaagaat
gaaaaatctatttaaaaaaaaagaaaaccaagatccaactatgtgctgtctatatgacatttgccttactttcagcagaaggaaatagattagaaaaaat
aaattatgcaaaaatgaagctgtgcatcttaaatatatacaatgtttatttgtcaattataccttaataaagctggaaaaattaaaaatAGAAAATATTT
GGGCCAGGCGCGGTGGCTCACACCTGTAGTCCCAACACTTTGGGAGGCCAAGGCAGGCAGATCACAAGGTCAGGGGATCGAGACCATCCTGGCTAACACA
GTGAAATGCTGTCTCTACTAAAAATACAAAAAATCAGCCAGGCATGGTAGTGGGTGTCTGTAGTCCCAGCTACACAGGAGGCTGAGGTAGGAGAATGGCG
TAAACCCGGGAGGCAGAGCTGGCAGTGAGCCGAGATCCAGCCACTGCACTCTAGCCTGGGCAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAGA
AAGAAAGAAAATATTTaaaaattgttaaaatcatatctggaaataaatattagttttcaaaacattgtttttttacattttgccatttgttaaggatttt
gatgatcttaaatgaattgagtaactttctttttggttaaaactaatatttgtaggaaattcttttttagaatatggccttgttggtctttataacttct
gaagtgatgttgtcatttgctccactttataaaataaaagcaaagtatgattcttaaaagtccacatcaagtgacagacatctgcttctatctgtgcagc
tctgttactacaactctttctctacaaagtgtgcaagcttcagtgtatggcctcagcatgtacacagttccacaggttgtgcactgcatcacatcaccgt
ggata Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:XG:NM:175569:9/10
0 chrX 2996938 2996949 1001587 0 + pAluX-2517000; RIP_Alu_chrX_002_02 NA NA SINE Alu Y gcaacctccaactcccgggctaaagcgatcctccagactcagtttccagagtagctgggaccccaggtgcttatcaccagcctagctaattttgtatttt
tattttttgtagagataggttctcattatgttgcccaggctggtcttgaactcctgggctcaaggaatcctcctgcctctgcctcccaaagtgctgggat
tacaggtgtgagccaccattgtgcccagccatatatatgattttaaaatatggtaaaaatggggtgacaaaaaaattcaactaactttgcatagatgaaa
agcatttctataactttggggatttggcccacagtcctgagcatgtagcttttgcctgcaaaacattcttaatcttcaaggagatgtttGAAAAATTGTA
GGCCGGGTGCGGTGGCTCATGCCTATAATCTCTGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGTGGTGGGTACCTGTAGTCCCAGCTACTTGGGAGGCCGAGGCAAGAGAATGGC
ATGAACCTGGGAGGCAGAGCTGGCAGTGAACCAAGATCGCATGACTGTGCTCCAGTCTGGCTGACAGAGCGAGACTCCATCTCAAAAAAAAGAAAAATTG
TAatcatctgtggctatcattgtctcagagtatttacaaaggactctgagagacaatagggatgaactcctgtttgtgtttttcctctcagaggagatat
ttgaagtgagttttgaaataagtatagagacgagatagggattgaatcaataatcccatgtccaatattcattacctgataactgagtagggatatgctg
agaaaagtgtcatgtgtttccttaagaaaatatgacctcagccaggactgagcaaaactatgaactggacgcagtggtcctcaaattccatgtttctttc
ttttcctcaattcagttctttcctcagcttccacttttcctttacttggtaattccttattatattaccttttgcttgtctttcctttctc UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ARSF:NM:004042:2/11
0 chrX 2506937 2506938 1001588 0 - pAluX-2026967; RIP_Alu_chrX_002_03 NA NA SINE Alu Sx acacatctgtaatcccagctactcaggaagctgaggcagaaaaatcgcttgaaccctggaggtgggggttgcagtgagccgagatcgcgccactgcaccc
agcctgggcgacggagtgagacgccatctcaaaaaagaaaaaaaagaacaggctgcctcagaagtggtcagaggtgtttgtttgccttgttgtgtgcact
tccccaagggaagtgtagcggggaggagagacgaatacgcacgtgtttgggtcataggactttacactggataagagtattgacataccttccaaattta
tatcactgaaaaaaaaaagaTTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGACATGGGGGAAAAAGAATTGGGTTGAAAATCTCACTCTA
GGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCACTTTGGGAGGCCGATGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCCGGCCACCAT
GGCGAAACCCCGTCTCTACTAAAAATACAAAATTTGCTGGACATGGTGACACATGCCTGTAGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATTACTT
GAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAGAA
AAGAAAACAAGGTTCTTTAGCAGAAGTAAACATTTTGGAATTCAAGATAAGTGACgttttcaaagctgttctcagttaatgttgttttcaaagcctgagg
ttgtggcttaggttattgagacgcttcttaaccattcttctcctccttcaccctaaaattaagatccttttatatctcctcttctcaggctgtgttccac
agatgttcatattggaacttgcctgcattgcagatgtctgtaaaaaaaaagcggggggagcggagaggcaggctgaaaggtagtagagaattccaaggtg
ccgacagagaaggaaagaccagcctgggtcttacatattagctctgtgatactccaagctccacagtgttaagct Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 148862496 148862792 1001589 0 - pAluX-146513150; RIP_Alu_chrX_148_01 NA NA SINE Alu Sp ctcctacatcgcacatccgcacgaccctgtgagagtcagggcagaaaaggaaagctaaaaggcggacaaatgagtgcaagagagcaaaaaagggaaccct
ccctaatctaatgggcagggcactggacgcatgcgagcacctcctccttgggggagaggtcacagccttcagatggaggggcagtgggacactccatgat
ctctggggttacttacaatttggagtgcttaggtgaatactgagtccaaaacagccctgcaaagacacagaagaacaagcccctgtgcggacgaggtctc
tgaaatacaaaaagccaacatggggttagaggcagaattcagaaagagctcctacaactccataccaacaaggcaaatgactcaatAGAAAAATGGGCAA
GCCAGGCACGGTGGCTTACGCCTGTAACCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCGAAGTTCGAGACCAGTCCAACCAACAAGG
AGAAACCCCATCTCTACTAAAAATACAAACTTAGCCAGGCATGGTGGCGCATACCTGTAATCCCAGCACTCAGGAGGCTGAGGAAGGAGAATCGCTTGAG
CCCAGAAGGCAGAGGTAGTGGTGAGCCGAGATTGCACCAGCCTGGGCAACAAGAGCAAAACTCCGTCTAAAAAAAAATGAAAAAGAAAGAAAGAAAAAGA
AAAATGGGCAAaagccatttcctagacgaggaaagcaggctgaccaaaaagcatctgaagggaaaccatgaatcagggtcaaagcggtcccagactggcc
gtgccccggaacactaggcaggatcaaacgtgaaccatctccagagaagggcaacttcctcctgggcctcagagtcaaaaaagcacagcgaggagaggtg
gctgcactctggaaagtgtcagtggggaggcaaaggaagaggaaggcggtgacaggctcagaaaacaggaggagttgcacggaaattagtctgagcaaaa
agaatgcttctctaggggagcatgtgggcagaagagaaggactgcacagccggggatgctgagcacggagaggcaaggtgatggcaaattcgcaagg UCSC - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LOC100272228:NR:027456:4/12
0 chrX 91027980 91027981 1001590 0 + pAluX-89177051; RIP_Alu_chrX_090_02 NA NA SINE Alu Y gagatttaacagtatttaaatttgggccatagatgaaaatgaattctacttttgactagtaactattcttgatccatcctttgcttttgtttgagagaat
attatctctatttgagaacaacatggaaggcattgaaactagttttccacaaaggccagaggacaaaaatatttatttccttagttgattccttatcagt
tgacctggtcgcacctttaatttaattgatattattattacgtttgccttgcaagttctcagatatctccaaccttttgtgttgtcattcatcgactacg
ggaatattctcaatgaaatgtccttgatggtctctctggttcttattctagtcatgaaaaggaaaagacaaaaagatagcaaatcttaaAACTAGTCATC
GGCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGAGGCTGTCTCAAAAAAAAAAAAAAAACAA
AAAAAAACTAGTCATCatagataaataaaaggaacttttagtgaactttgtccattaaattataagtagcttacctgatgagctacagtgtactgtatac
tttctcccctgcaagcactcaaagaaatattatttgatcaaaatctatagtgcataaattaaacaaaaaatactgaaatatattctcattttattttaat
tatgaaagtttatttttaatgatatgatatttaagctattatatttctcacttttttattttcaatgatttaaatgtaaaaattataaaacaattttaat
ctcattcattaattcatctttcatgtataagtctgttttctctgttgaccaccctgtccacattatgaatgaaaatatgtatatacttggccgggcgtgg
tggct Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PCDH11X:NM:032969:2/6
0 chrX 89307171 89307172 1001591 0 - pAluX-87456226; RIP_Alu_chrX_089_01 NA NA SINE Alu Y agtttgaaattttacatttatgtctttaatccatcttgagttgattatgtgtatggtgtaaggaagtggtttagctttaatcttctacatatagctagcc
atttatcccagtaccatttactgaacagggagtctttttcccattgcttgtttttgtcagctttgtcaaagatcagatggtcatagaagggtgatcttat
tttggagctctttattctgttccattggcctatatgcctgtttttgaaccagaaccatgctgttttggttactgtagcctcgtagtatagtctgaagttg
ggtaacatgaagcctccagctttgctacttttgcttaggattgccttggctatttgggttcttttttggttccacatgaattttaaAATAGCTTTTTCCA
GGCCGGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGGCCATCCTGGCTAACACGG
TGAAACCCTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAATAGCTTTTTCCAGgttctgtgaagaatgtctttggtagtttgataggaatagcactgaatatgtaaattgcattgggcagtaaagccattttattgg
tattgattctttctatccatgagcatgagatatttttccatttgttttgtgtctcctctgatttctttgaacagtgttttgtaattctcatcgtagatac
cattcattttcctcgttagctgtatttgtaggcattttttgtgtgtgtggcaattgtgaatgggattgcctttctgatttggctctcagtttcactattg
ttggtgaatagaaatgctagtaatttttatacattgaatttgtatacagcaactttgctaaacttgtttatcagctgaaagagcttttggcccaagactg
tg Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 89451792 89451793 1001592 0 + pAluX-87600864; RIP_Alu_chrX_089_02 NA NA SINE Alu Y cctatcctcagagatccactaggcaatgccccaagtggggactctgtgtaggggctcccactccacatctcccctctgcactgccctagtagaggttctc
tatgagggccctttctctacagcagacttctgtctggacagtcaggtgtttccttacatcttctgaaatctaggcagacattcccaagcctcaacttgac
ttctgcacacccaaaggcccaacaccatgtggaaaccaccaacacttggggcttgcactctctgaaacaatggtacaaactgtatcttggccccttttag
ccacagctggagctggaatggctgggatgcaggataccatgtcctgaggctgcatagagcaactgggccctggccctggctcacaaAATTATTTTTTCCT
GGCCGGGCGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACGTGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATAAAATAAA
AAAAAATAAAAAAATAAATAAATAAAATTATTTTTTCCTcctaggcctccatgcttgtgatgggacaacctatcatgaaggtctctgaaattccctggag
acattcttccccactgtcttagctattaacattccactcctgtttacttatgcaaatttctgcagctggcttgaatttctctccaccaaatttttttttt
ttttcttttttaccacatggtcaggctgcaaattttccaatcttttatgctctactttccttttcaatattagttctagtttcagacaatctgttttttc
atacatacaagcatacaccttcagaaatagccaggtcacatcttgaatgctttgctgattagaaatttcttccacacgataccttaaatcatctcactga
agttcaaaattccacagatctctag Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 90169890 90169891 1001593 0 - pAluX-88318951; RIP_Alu_chrX_090_03 NA NA SINE Alu Yc2 ttcttgcccttgccccaacatgtgtctggcaacatggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggct
agggcggaagggccagctttttcatgggctatgtgaatgacatgcctggtcaaaccaatcccctgagccctatgcaaatcagacaccacctcctccagcc
tactcatataagtagccacttttctgttgcacatggggtctcctctcttggctttgggaacccctccctctgtctgtacaggggagcttcttccttcttt
cttctcccttctttcttgcctattaaactctccactccttaaaatcactccacaggtgtccatgtcattttacccaattcccacgaaacAAGAGCCCTGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGTGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAGCCCTGGtgttcctccactcatcggagctgtatcaatagcaacgtaccaaagagttggatggattaaacaagataaatttatttc
tcacagttctagagggatagaagtataagatcaaggaatctacaagtttactttttactaagtcctcactccttggctgacaatggctgtcatacttgct
gtgtcnnnnnnnnnnnnnnnnnnnnccacctttgatatgcaaatgctggccattagaaactgggtctgcccaaacatggcaattcctgccgccttcttgc
ccttgccccaacatgtgtctggcaacacggcctccccaacatatccccatgtgtagaacatcatggcgcactgcatttgcataataaaaggctagggtgg
gagggccagtt Other - Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 81469595 81469596 1001594 0 + PV92; RIP_Alu_chr16_081_03 AACTGGGAAAATTTGAAGAAAAGT TGAGTTCTCAACTCCTGTGTGTTAG SINE Alu Ya5 ggctgtggaatcagcctcagaagccagattgtctgagccccaaggaaacgtcaaacccctctccctctccagtagcattccccagtctgtgtcacttaga
cgaaaaggatctcagggtgggtggcaatgctccttcactgaaatctgcagttatctctacccaaggcttacagtaaattttttgcaaattagaaagccct
ttgctctctcagtaaaccctggctttcaagatttttgttttagtaaagtctttagactaaatgttgaatctttcactctctttgctcctaatcatctcta
agacagcaaatgcctctagcaaaaaagaggagacgtcaactgggaaaatttgaagagaaagtcacacagatacatttcagtaaggttgtctctgttactt
nnnnnNNNNNNNNNNnnnnngaggcttacaagaaggaaagaattccctctctaaacacactctaaacacacaggagttgagaacggggagatttattcca
gaaccccttctgtgcgttggggcttctggtagcttgcctttcttggtaacgattttctcagagactgggtagattcgagtggagcctggggcatggttgt
tggtccaatggcgggggttggggagacacaagcagttggcagggaacttacaaatctccaggaggttattgagaataaaaattcagatattgccatcttt
tccatttcaaagcaccaagagtctgtcatcagcaattgtgcctttctaggtgtcacctgaatatctaacattgaggcattgaaagatagatcaggactga
ttttactgagcattttcaaa Other - Watkins WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, HarpendingHC, Rogers AR, Jorde LB. Patterns of ancestral human diversity: an analysis of Alu-insertion andrestriction-site polymorphisms. Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. PMID:11179020.
- Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM,Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, ScheerWD, Keats BJ, Deininger PL, Stoneking M. Genetic variation of recent Alu insertions in human populations. J Mol Evol. 1996 Jan;42(1):22-9. PMID:8576959.
- Ray DA, Walker JA, Hall A, Llewellyn B, Ballantyne J, Christian AT, TurteltaubK, Batzer MA. Inference of human geographic origins using Alu insertion polymorphisms. Forensic Sci Int. 2005 Oct 29;153(2-3):117-24. PMID:16139099.
E:Insertion-specific detection:PCR precise insertion position unknown TSD unavailable 55 437 122 NA intron:CDH13:NM:001257:2/14
0 chr6 104848925 104849231 1001595 0 - Yb8AC1371; RIP_Alu_chr6_104_02 GCTGGAGGCTGAGAAATCAC TAGTCTGGATGGGCTCCACT SINE Alu Yb8 tctgtggggatcacagaaagaataatgaaggagtgaagtttggtaatgaatgaatgaatttggtaatgaagaacaattgcatgttctttgtttccctgta
tctacatccaagcaatgtgacttcacatctgttctataaagaggtgatctatttccccaccccttggatctggcctagccttatgatttgactaatggag
taatagaaaatggaatgtaagatgagacttgagaagttccctcacattgaggcttattattttgctttttggaactcctggggctagcctgctggaggct
gagaaatcacatggggagaggtcttatcattcctagatgtcccagctgataccatcatagcccagccagctgacctttaaggtttgAAAGAATCCAGATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAA
AAAAAAAAAAGAATCCAGATAaactcagtggagcccatccagactagaactgactaggagaacccagctcaattttctcatctgcagaatcatgagctaa
ggaaatggttgttgttttgaaccactcattttggaggttgtttcttatatatcaaaagcaaattaatgaacacttaacatcttagttaattggagctcag
gactgttttgtggagaatgggtaagagtgatgtataagtgtttcagggctgtaacaaagctccacgagctggggggcttaaataaaagaagtcatctcac
agttctggaggctaaaaatctgaagtcaagatgttggcagggttggttccttctgacagctgtgagggaagaaatggtttcaggcctctctccttggctt
gtagatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 456 135 NA intergenic
0 chr1 183639730 183640057 1001596 0 + Yb8AC992; RIP_Alu_chr1_182_02 GTAATGACACAGAAGCGGGG CTCTGGCCACTCCTTCTCAC SINE Alu Yb8 tatcagacatctaagagatgaatctggagtttaggggagaggggcagggtggggctatagatttgggagtcattagcttatatacctggtatttaaaatg
tggagaccagatgagataatctagggagtgagtataaagaaaagtggtccaaagactaagctccttcgtaatgacacagaagcggggaagggaagtgctg
gcaagggaagggcatcgtccctttaaatgatatggaatgggggaagggcgtggtccctggctagggctctatcccctggcctgtgcctgcggacctcggc
gaggacaggcatttttgttttcctgcccaaatgttgcatttcccaagaccaccctggcctgccaggcccccattctgtgcctataaaaacCCCAAGATTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAACAAAACAAAAAAAAACCCAAGATTCtagcaggcaaacacacaagcggctggaagtcgagaggatgccgggagcacaccgcaggcact
ggcacgccagcaggctatcgaccagcagaatgatgtggagtttggcagggcagtcggaggagagcctgggctgctaagcagacccagggctttctggaaa
tgttataaaacaagtgaagtttgtggtatataaattatccctcgagttaacagcctcggccgtttacaaaaaaaccacacacacacacacacacacacac
acacacgacggaaaaaggaggcaaagagatggggagtaactagtgaaggatctgtgagaaggagtggccagagtaaaaggaataaaacaggaaattgtgg
ggtcctggcaaacaactcagtataattc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 906 568 NA intergenic
0 chr5 173539714 173540019 1001597 0 + Yb8AC1286; RIP_Alu_chr5_173_01 TGATTTTGTGCAGAGCCTTG TATGGCCTCATTCCTTTTGC SINE Alu Yb8 gagtttgcaacaattgctttagggcttaaattgcaagaacaataatagatgcattttgaaacaggcatcgtaaatgggcatagctggcaaaatacagcag
ctccttgggaggtcaaagccatatcgactggcaaccttttgatcaggaaaaaaccctagtgcaaattggtgacgatttccaaccagataagcagcaaccc
ctgtggcctggaccatccatgaccttgagctcccgggaacagcactctgtgggctgtcagagcaaatatgaacaccgtacaaaaacaggggagaggactg
aggtgtcaggggaagtcgcctcggtcatctgttcagttctgtttatggtccaagtgattttgtgcagagccttgcaaagaagatttAAAAGAACTCGATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGGGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCGGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAA
AAAAAAAAAAGAACTCGATGaaaacgtttttgcaccataaaacacctttcctgtcggagtggcaaaaggaatgaggccataaaaatgctgttccagccag
gtctgcaggtgaatttcagtccctgaataaacattctctctttcatcagggacaatggtgagaaaaatacaaaacaaaacaaaacaaaacctctttaaag
agctgtgaatgtactaggtgctcatctcttccttacaaccctgcggttgtgggggatctgattcccattttgcagatgaataaactgaggctgagggagg
ggaagtctcttgttcaagatcacacagctgggacgtagcaaaaccaggatggaactttaccagttactgggagggatggagcctttgacttgcccactgg
tcccca UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 427 107 NA intergenic
0 chr6 12725322 12725635 1001598 0 + Yb8AC1368; RIP_Alu_chr6_012_04 TCAGACATGCAAAGCTTCAAA TTTGGGTGCCCTATTTCTTG SINE Alu Yb8 gtaggacacaatacaaatagaataactagacaggatttttggaaattaaaagtattaaagccaaaataaaacattcaattaaaatgttgaaaaattaaac
taatctcccagaagtgggaataaacagagatgagaagaataaaaagaaaggaaagaaaaaatttatacgtagggatgtaaagaccgttttaacatcagca
ctggaagttagaagcaagagatcggtgtcctcaaaactttgagtaaaagtatccacccggccaaatgattaaccaagtatgaggacaaaataaagaaaat
gtcagacatgcaaagcttcaaaacattgatcttccatcagtccttacttaggaagccaataacaaagagaagaaacaaaaacaagcaaaacaagagAAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGCCAATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAACAAGAgaagaaggaggtaaacacaggattcaagaaatagggcacccaaaacaggaaggaagaggtgcagaaaagtcttagaaagatg
gcaaagagatgtctcagtataagagttatgtacaggcccacagacaaacaaatacatattgaaaaattaaacagaagtcaacaagagtggttgtcttcag
agaaaaggaaagtggagctccttatcaaaatagactttactatatgaaaaatttttattgagaagtgtttaacataattagtgggtaatacggcaaaact
acaaggtcagagaaaactgagcagagaggtgaaggataacagacgacatattgccctgtaatcccagcactttgggaggccgaggcaggcggatcacgag
gtcaggagtttgag UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 461 145 NA intergenic
0 chr9 18498901 18499229 1001599 0 + Yb8AC1480; RIP_Alu_chr9_018_02 AGCTGAGCACATATCCCAGAA > SINE Alu Yb8 atcttttaagttgtcaagcacctaagaagctatttgttttcttgataatttttatttgcaatctagatctttcactattaacagaaattcctgggttaca
gcctcatgtttcaaaaagctagctttcagctatcaaagttcatggagacacctagcattcattaaactttcagttatagtcatgtataaaaattttaatt
ttcattaaaatacataactctaagcagtaagaaatattaaataagtacttataaaagcaaaatataatattaataaaatacattctaacatttttctcat
tactacttgactgtaattaggtcattgcttaaatatggccctaaatcagtccttaggctggatttagaatgtattttgactcttataatttAGAAATAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATAGAtatgttctgggatatgtgctcagctttaagacttcgaatcagtttgatttttaaagttttca
agttttttccctcaacaactggttctatctattctagtaccagcaagaatttattagtttactccccttacttccttacgctaatggtaactctaattgg
tgtagcaattattcattgccacagtaatgctgcataaaaaccactaatcctcagtggaatatcagataaggaattattgcttggctaggcagctctgatg
gactttgatggtcttgatcacatatctagggttggctggatgttggctgatctagactggcttcatctggttcaacttgggaaacccaattctgctccac
aagttccttatcctccagcaggctagcct UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 60 426 113 NA intron:ADAMTSL1:NM:001040272:2/29
0 chr18 68277657 68277990 1001600 0 + Yb8AC704; RIP_Alu_chr18_068_02 AAACAGTGCCAGGATATGAACAC CACTCTTCGATCAGTTATCATTGC SINE Alu Yb8 gggcaagcatgtcaagacataattgagattttatttaaaaaatatattttttttcctagaaaactcatgtacatgcaaaatcttgcatcctaacttaaag
gtttacaaagtccctaaactccatatgtagagacttacggaatcataaaaaccatgataagatacctttggtctccttgtgtgaggcattatttaaaaga
acctccagaacctacacacacacacacacacacacacacatgcacaaacacacattctatgtgtacatatacatagtatatgcattcaaaaatatatatg
tgatatgtgcaaaattgcatacacacatatgcactcttcgatcagttatcattgctaaagattagtcagtgactaccatcagctcAAGAATTTCCTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGTCCAGCCTGGGCGACAGAGC
GAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAATTTCCTTTTCactattctattagtgcgtaacaaacagtagatagcttactttatgtgttca
tatcctggcactgtttttgacattctacatagatgaagagtaaacctataatacatctgcatgttgcgtattgttttcccctgtaaacatatagaaaact
caggaacaaagattttcagtgatgtttcctgtccaaggtcacctggttagaatatgacagttgagttcatagcatagactcactgtgacccagtgtcttt
tcttctccatcacactagtatttttagttagagaaaactaatggaatgaacttttctattgcttcagttctccgcagatcctatgaagtaggtttgggat
agggagcaggtatctataggattttctacctacc UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 55 485 136 NA intergenic
0 chr4 36683703 36684007 1001601 0 + Yb8NBC469; RIP_Alu_chr4_036_03 TGCGTGTGACACATGGAGT TTCTCAACAGTTCCCCAAGG SINE Alu Yb8 aagagttatagaaatgcctggatgcccagacaaaagtttgctgcagggatggggccctcatggagaacctctgctagggcagtgtggaagggaaatgtgg
ggttggagtcccaacacagagtcgctactggggcactgcctagcagagcttgagaagagggccaccatcctccagacctcagaatggtagatccaccgac
agcttgcactgtgcacctggaaaagctacagacactcaacaccagcccgtgaaagcagctgggagggaggctgtaccctgcaaagccacaggggtggagc
tgcccaagaccatggcagcacacttcttgcatcagcgtgacctgcgtgtgacacatggagtcaaaggagatcatttggagttttAAGATTTGACTGCCCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAAAAAAA
AAAAAAAGATTTGACTGCCCCacaggatttcagacttgcatggggcctgtagcccttttgttttggccaatgtctcccattttggatggctgtatttacc
caatggctgtacccccattgtatctaggaggtaactaacttgcttttgattttataggctcataggtggaagtgatttgctttgtcttggatgagatttt
ggactgtggacttttgagttaatgctgaaatgagttaagaccttggggaactgttgagaaggcatgattggttttgaaatgtgagaacatgatatttgag
agggaccaggctggaatgatatggtttgtctgtgtctccactcaaatctcatcttgaattcccatgttttgtgggagggacttggagggaggtaatttaa
tcatg UCSC - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
E:Insertion-specific detection:PCR NA 51 618 297 NA intergenic
0 chr14 59523925 59523926 1001602 0 - Yb7AD136; pAlu14-58444197;1104685123357; RIP_Alu_chr14_059_03 CTTTTGGCAACCAGTTACAT;NA GGAAATGGAAGGGAAATCTA;NA SINE Alu Yb7 gtctctttgtaaaagtattccaaataataaatgaaataatgatagaataagaatatcaccattttgtaatccccaactgcattaagtaataatggctttt
ggcatcacacaagtgagacaataagatatcacgtgtctcctacagtcttgtcaaacattagttttgccagaaaaatggaacctgggtctgatcctatctg
tggatccacttgccaatttgcaggaaatatagaagatgggaggcatatagcgatgtatcttaagtaagcaaatcccaggctgctggaaactctttgggtc
gaatggctcaagtatttctagagataaactatgggaaatggaagggaaatctatcaattaaaagagatttaaaagacagagtacAAAGAAGTTAAGGTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAGTTAAGGTTGatctctgggtggtgagaatgttttgttgttggcctacattttctgtttttatacaatgcatataaacttc
ctctgtaatgataacaagttgttacaaataatgtaactggttgccaaaagcaacaaaagaaacgcagttacattttttaaaaatggcaaaaccaaactat
tgtgctagggatgtacatttgggtgacagaactatcaggaaaaaatccaggaagacgattactgcagaggttaggataatgatttcttgtggagagagga
aggcatggggcacatagaagaggcttttgccctaggtggcaaaattttctttcttgatctgggtgctgattacaagcattttcaccttacaacaatgtac
taagccatatatat Other;Venter - Carter AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS,Jorde LB, Batzer MA. Genome-wide analysis of the human Alu Yb-lineage. Hum Genomics. 2004 Mar;1(3):167-78. PMID:15588477.
- Wang J, Song L, Gonder MK, Azrak S, Ray DA, Batzer MA, Tishkoff SA, Liang P. Whole genome computational comparative genomics: A fruitful approach forascertaining Alu insertion polymorphisms. Gene. 2006 Jan 3;365:11-20. Epub 2006 Jan 10. PMID:16376498.
- Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA;NA 60;NA NA;NA NA;NA NA;NA intergenic
0 chr5 35945007 35945008 1001603 0 - MIVI-2; RIP_Alu_chr5_035_01 NA NA SINE Alu Ya5 tttaccatactcagctagttgcactccagtgaactgattataataaaatatatttaactttgaaatgagatcataatttaattttggagaacagatttac
aaggcctttcaggatgttttagtgccttcacactcatcctcattcatcttcacactttgctatgtggaaatgccatttaaaggtagtttttggtaaaggg
aatgtcaaataacagaatttactctgatttattctttagtgtgctttgagattaacttacatttctaaactgcactgaatttgaaaacaaaatcaaccgc
ccatctccattaacttttatcttcaagttacaaatgcatagcttggtagggtaaggaattatatagctccatgactgtgtctaggctgagatGAAAATGT
TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCGTCTCTACTAAAAATAACAAAAAATTAGCCGGCGTAGTGGCGGCGCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
AAGAAAATGTcatctgtcctttatcaacagccctaaattgactttttagaaaaaaaaaaaaaaccctgagccagttctgttcttagatgatctaagggtt
ttggtgataaggaaaggggattgtcccttgagtaacagtcagcagcagcacagccccagggttcattgtctcttaagccctttacagcacaggaaaagat
aagtggcccagtggacaagaagagagtggttaagggaagaagaaataaaccttcctcttctgaagggaatgtgctccaactttttaaatgaaacttcatg
atgagtctcattagcaaggggtgggggataggaaggtgacctttctgttcttcctgctgacatttccctttcagggatggagacataccctctatttcag
gc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Economou-Pachnis A, Tsichlis PN. Insertion of an Alu SINE in the human homologue of the Mlvi-2 locus. Nucleic Acids Res. 1985 Dec 9;13(23):8379-87. PMID:3001638.
E:Library screening:TE-specific hybridization NA NA NA NA Associated with leukemia intron:CAPSL:NM:144647:4/5
0 chr4 2837653 2837654 1001604 0 + ADD1; RIP_Alu_chr4_002_01 ATGTAATTGTTCAGGACATGTGGC AAATAACATCCAGAATCTTCAGAT SINE Alu Yb8 aaaccaccctcacagagtgaaattcagaaaaaaaattttgtttcaataaaaagattttgaaagatttcatcacttcaacaaaactatagttaaaaaatta
aaatattatattaattgaaggacagtaacagtataatgagggagcaaaaatagagaaagtagctgacattgccagaagataagtcaaattctgctttttc
ccacatgtaattgttcaggacatgtggctcagaatatgtgaattagtatagtaactacagcagagtctctctgggttgtgttatttgctcaattgcgaga
tagcatacttataaaattatttctagattcactcctgaaatcttaactgcagtctgctttgtggaatttcttcttggaagaacttgtttaaGAGTATGCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTTCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAGTATGCTgattgatatttgttcatgggccatctgaagattctggatgttattttattttattttttgaggcagtct
ccctctgttccccaggctggagtgcagtagcacaatctcggcttactgcacccttcgccttccgggttcaagcaattctcctgcctcagcctctggaata
gctgggactacaggcacgcaccatcacacccagctaattttttgtgtgtgtgtatttttagtacagacggggtttcaccatgttggccaggctggtctca
aagtcctgacctcaggtgatctgtccgccttggcctcccagagtgctgggattacaggcgtcagcctctgtgcctggcctggaggttattttaaatcgtt
ttttttttttgggatgaaaaca Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Goldberg YP, Rommens JM, Andrew SE, Hutchinson GB, Lin B, Theilmann J, Graham R,Glaves ML, Starr E, McDonald H, et al. Identification of an Alu retrotransposition event in close proximity to a strongcandidate gene for Huntington's disease. Nature. 1993 Mar 25;362(6418):370-3. PMID:8384324.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA 460 118 Huntington disease intron:ADD1:NM:014189:1/15
0 chr3 167030371 167030372 1001605 0 - BCHE; RIP_Alu_chr3_167_03 NA NA SINE Alu Yb8 cctttaatgctccttgggcggtaacatctctttatgaagctaggaacagaacgttgaacttagctaaattgactggttgctctagagagaatgagactga
aataatcaagtgtcttagaaataaagatccccaagaaattcttctgaatgaagcatttgttgtcccctatgggactcctttgtcagtaaactttggtccg
accgtggatggtgattttctcactgacatgccagacatattacttgaacttggacaatttaaaaaaacccagattttggtgggtgttaataaagatgaag
ggacagcttttttagtctatggtgctcctggcttcagcaaagataacaatagtatcataactagaaaagaatttcaggaaggtttAAAAATATTTTTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGACGTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTTTTTCCaggagtgagtgagtttggaaaggaatccatcctttttcattacacagactgggtagat
gatcagagacctgaaaactaccgtgaggccttgggtgatgttgttggggattataatttcatatgccctgccttggagttcaccaagaagttctcagaat
ggggaaataatgcctttttctactattttgaacaccgatcctccaaacttccgtggccagaatggatgggagtgatgcatggctatgaaattgaatttgt
ctttggtttacctctggaaagaagagataattacacaaaagccgaggaaattttgagtagatccatagtgaaacggtgggcaaattttgcaaaatatggg
taagtgctgatttttgtcattgttctc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Muratani K, Hada T, Yamamoto Y, Kaneko T, Shigeto Y, Ohue T, Furuyama J,Higashino K. Inactivation of the cholinesterase gene by Alu insertion: possible mechanism forhuman gene transposition. Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):11315-9. PMID:1662391.
E:Library screening:TE-specific hybridization NA NA NA NA Acholinesterasemia exon:CDS:BCHE:NM_000055:2/4
0 chr11 118465033 118465034 1001606 0 - PBGD; RIP_Alu_chr11_118_01 NA NA SINE Alu Ya5 accctccctcccccagccattcttgcagtccaggcagccagatggctcagaaccagacactctccttttctgaagcctgaaaaaacccacctatgagctg
ccttcagcctctctgagggtttaagcccagcagcctatctgacaccccgggtcccagcaagagacctagcatactagggtcccagcaagagactgggagg
gcaccacactctcctatctttacttactcattcttctccagggcatgttcaagctccttggtaaacaggcttttctctccaatctgccggacagaaagag
cctgagtgaatcccttcagggaaggaaagaagagtggggacaagaactggggaggaagatgttgttaccttagagagtgcagtatcaAGAATCTTGTCCC
GGCCGGCGCGGTGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAATCTTGTCCCctgtggtggacatagcaactgaggagagagtcaatcaatcaggtgctcattattgatcagcatttactg
agcctagcgctgtgctacgattcatgatggggacagaggcacataatccctggttcctgccctctgagtatatacaatcgagcaggaagaccagaaacac
tcataaaaagacccaaagctcaagatgttaaatgccaggctaatccaggtagtcagagctggaggtattcagaggaaagcaccttcagaactgggagcag
cccagaaggaatctcggggcagcgggacgggctttagctataggcaaagccagaaatgttgtgttctctcctctcggggtactgggcttcccattagctt
ccactcctttccagaaaa Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Mustajoki S, Ahola H, Mustajoki P, Kauppinen R. Insertion of Alu element responsible for acute intermittent porphyria. Hum Mutat. 1999;13(6):431-8. PMID:10408772.
E:Insertion-specific detection:PCR-SSCP NA NA NA NA Acute intermittent porphyria exon:CDS:HMBS:NM_001024382:4/14
0 chr11 57133182 57133183 1001607 0 + C1NH; RIP_Alu_chr11_057_03 NA NA SINE Alu Yc1 gaactcctgacctcaagtgctcgtccgtcttcggcctcctaaagtgctggcattacaggcgtgagccactgcacccagcctgagtttttttttttttttt
aagccaaaggaggaggagtagttttgtgcacaaaagccactatttagagttccttaggttttaaacagataattaatttaatgtactaacaaatgcaaaa
ttaaaattttacttatgccttttaattttaagctgaacttgctacattaagagtagggtgatttggctgggcgcagtggctcatgcctataatcccagca
ctttaggaggctgaggcaggtggatcacttgaagctaagagtttgagaccagcctggccaacatggtggaattctgtctctactAAAAATACAAAAATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAAT
GGCGTGAACCCGGGAGGCGGACGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAATTAgccaggcatggtggcacatgtctgtaatcccagctactcaggatgctaaggcacaga
atcacttgaacctgggaggcagaggttacagtgagccaaaatcgcgccactgcactccaacctgggcaacacagcaagactctgtctcaaaacacaaaaa
aagaataggctgggtacagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtgaatcacctgaggtcaggagttcgagaccagcttgg
ccaacattgtgaaaccccatctccattaaaaatacaaaaaataagccgggtgtgatggtgcacgcctgtaatcccagatacttgtgaggctgggacagaa
gaatcgcttgaacccgggaggcgaagg Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Stoppa-Lyonnet D, Carter PE, Meo T, Tosi M. Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus todeleterious rearrangements. Proc Natl Acad Sci U S A. 1990 Feb;87(4):1551-5. PMID:2154751.
E:Library screening:TE-specific hybridization NA NA NA NA C1 inhibitor deficiency intron:SERPING1:NM:000062:6/8
0 chrX 30619119 30619120 1001608 0 - GK; RIP_Alu_chrX_030_01 CCTTGATAGTGATTTCAGTAAGTTC GCTTCTTTCTAGTGAAATCTGCAAAC SINE Alu Ya5 aagcaccccttgggaagtgtgacttaagccactgggacgcattataatctcttccagcctgtcaattttgtgttattattgttccaatccaccacagagc
aagaaagacgggaaggtaaagacttgagttggcctcaattatccgggaaaaagattctataaattgtatcaaataactattgtaccataagatgcttctt
tctagtgaaatctgcaaactttttttaaaaaaagaaacattcttatagtatacttctgaagaaattcttaccttgacaaagttattatttcctggaattc
ttttactaagactctcaacggtagactgggttcttagatcaagccacactatagaccaaaataaaataatatacatgaaaaacttcatttAAAAAATAAG
GGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGC
CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
AAAGAAAAAAATAAGaacttactgaaatcactatcaaggataaaagactgattagtttctataaggaattaaaattctatagcttttaagagatagaaat
tagaaaattagaaatgaatgggcatattgttagataaaaataaatttatgagaggatttaaagcttttatgcaaaattacagaccaagttaggagaataa
tacaaaccttagagtgcttattttgtattatttttatagaacaaaactacaaaaaatatttggaatatagattttctaagtatacatgaggccagagaat
atctaaaagctaggcaggctagttggtagcacaaaatgcaaaacccaggatcatcataccatatataaagtgtgcatcttaacaaactagggagcaattt
gtgac Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Zhang Y, Dipple KM, Vilain E, Huang BL, Finlayson G, Therrell BL, Worley K,Deininger P, McCabe ER. AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individualwith benign glycerol kinase deficiency. Hum Mutat. 2000;15(4):316-23. PMID:10737976.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA NA NA NA Glycerol kinase deficiency intron:GK:NM:203391:4/20
0 chr3 123486135 123486136 1001609 0 - CASR; RIP_Alu_chr3_123_02 TCGAGCTACCGCAACCACGAGCTGGA GGATCCCGTGGAGCCTCCAAGGCTG SINE Alu Ya4 gtcgggtcagcgtatcgctgcttttctgggcctccagggagttctggtgcgtagaattcctgtgggccatggcgttcttctgaggctcatcaaagctcag
tgagaaggtgaccgtgccgctgccaaagatgaccttctgcttgcatctgggctgctgctgagatcgttgctgctgtgggagggtcaggggctgctgctgc
tgctcttgctgggttagggccagcggctgctgctgcttctgcctctcgggctgtgggaatgggtcttcgctgttgctcttgctgctgatggaggaggagg
gggtggatcccgtggagcctccaaggctgctggaccgcttgcgggagacgttgctgcggcgcagcgtggcccgggcagccaccttGAAAGCGTGAGCTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTTAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCNNNNNNNNNNGAAAGCG
TGAGCTGCggtgctgcaacgcacctcctcgatggtgttgcgggatggcttgaagagaatgatgtagatcttgttgaagaagatgcacgccagcaagccaa
agctggctgccaggatggcaatcacctctacggcagagacaaacttgccataggtgctggcataggctggaatgaaggagatccagacgatgaagaagat
gagcatgctgaaggtgatgaacttggcttcattgaagttctccggcagcttccgggacttgaaggcaaagaagaagcagatggcagccagcaggcaggtg
tagccgatcaggaagcccagggccatgagggagccctcgtggcacgtgatgaagatgatctcatcctccagctcctggttgcggtagcttgac Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Janicic N, Pausova Z, Cole DE, Hendy GN. Insertion of an Alu sequence in the Ca(2+)-sensing receptor gene in familialhypocalciuric hypercalcemia and neonatal severe hyperparathyroidism. Am J Hum Genet. 1995 Apr;56(4):880-6. PMID:7717399.
E:Insertion-specific detection:PCR NA NA 96 374 Familial hypocalciuric hypercalcemia exon:CDS:CASR:NM_000388:7/7
0 chr5 112203766 112203767 1001610 0 + APC; RIP_Alu_chr5_112_02 GTTTCTCCATACAGGTCACGG CTGTAGGAATGGTATCTCG SINE Alu Yb8 acttgatagttttgagagtcgttcgattgccagctccgttcagagtgaaccatgcagtggaatggtaagtggcattataagccccagtgatcttccagat
agccctggacaaaccatgccaccaagcagaagtaaaacacctccaccacctcctcaaacagctcaaaccaagcgagaagtacctaaaaataaagcaccta
ctgctgaaaagagagagagtggacctaagcaagctgcagtaaatgctgcagttcagagggtccaggttcttccagatgctgatactttattacattttgc
cacggaaagtactccagatggattttcttgttcatccagcctgagtgctctgagcctcgatgagccatttatacagaaagatgtggaattaaGAATAATG
CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGCCGAGGCGGGTGGTCACGAGGTCAGGCGGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGCGGTGGCGGGCCTGTAGTCCCAGCTACTCGGGGGTGAGGCAGGAGAATGGCTGAACCCA
GGAAGCGACGTTGCATGTAGCCGAGATTGCGCCATTGTCGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATAATGcctccagttcaggaaaatgacaatgggaatgaaacagaatcagagcagcctaaagaatcaaatgaaaacc
aagagaaagaggcagaaaaaactattgattctgaaaaggacctattagatgattcagatgatgatgatattgaaatactagaagaatgtattatttctgc
catgccaacaaagtcatcacgtaaagcaaaaaagccagcccagactgcttcaaaattacctccacctgtggcaaggaaaccaagtcagctgcctgtgtac
aaacttctaccatcacaaaacaggttgcaaccccaaaagcatgttagttttacaccgggggatgatatgccacgggtgtattgtgttgaagggacaccta
taaacttttccacagctacatc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Halling KC, Lazzaro CR, Honchel R, Bufill JA, Powell SM, Arndt CA, Lindor NM. Hereditary desmoid disease in a family with a germline Alu I repeat mutation ofthe APC gene. Hum Hered. 1999 Mar;49(2):97-102. PMID:10077730.
E:Insertion-specific detection:PCR NA 61 NA NA Hereditary desmoid disease exon:CDS:APC:NM_000038:16/16
0 chrX 138471785 138471786 1001611 0 + FIX; RIP_Alu_chrX_138_03 NA NA SINE Alu Ya3a1 aaaagcgaaatgtgattcgaattattcctcaccacaactacaatgcagctattaataagtacaaccatgacattgcccttctggaactggacgaaccctt
agtgctaaacagctacgttacacctatttgcattgctgacaaggaatacacgaacatcttcctcaaatttggatctggctatgtaagtggctggggaaga
gtcttccacaaagggagatcagctttagttcttcagtaccttagagttccacttgttgaccgagccacatgtcttcgatctacaaagttcaccatctata
acaacatgttctgtgctggcttccatgaaggaggtagagattcatgtcaaggagatagtgggggaccccatgttactgaagtggaaGGGACCAGTTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGATGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGGGACCAGTTTCTTaactggaattattagctggggtgaagagtgtgcaatgaaaggcaaatatggaatatataccaaggt
atcccggtatgtcaactggattaaggaaaaaacaaagctcacttaatgaaagatggatttccaaggttaattcattggaattgaaaattaacagggcctc
tcactaactaatcactttcccatcttttgttagatttgaatatatacattctatgatcattgctttttctctttacaggggagaatttcatattttacct
gagcaaattgattagaaaatggaaccactagaggaatataatgtgttaggaaattacagtcatttctaagggcccagcccttgacaaaattgtgaagtta
aattctccactctgtccatc Other - Ostertag EM, Kazazian HH Jr. Biology of mammalian L1 retrotransposons. Annu Rev Genet. 2001;35:501-38. PMID:11700292.
- Li X, Scaringe WA, Hill KA, Roberts S, Mengos A, Careri D, Pinto MT, Kasper CK,Sommer SS. Frequency of recent retrotransposition events in the human factor IX gene. Hum Mutat. 2001 Jun;17(6):511-9. PMID:11385709.
E:Insertion-specific detection:PCR NA NA NA NA Hemophilia B exon:CDS:F9:NM_000133:8/8
0 chr17 38499348 38499349 1001612 0 - BRCA1; c.1739_1740insAlu; RIP_Alu_chr17_038_01 TTGTGAATTTTCTGAGACGG GAATGCTATGCTTAGATTAGGGGTT SINE Alu Sq agagttcactccaaatcagtagagagtaatattgaagacaaaatatttgggaaaacctatcggaagaaggcaagcctccccaacttaagccatgtaactg
aaaatctaattataggagcatttgttactgagccacagataatacaagagcgtcccctcacaaataaattaaagcgtaaaaggagacctacatcaggcct
tcatcctgaggattttatcaagaaagcagatttggcagttcaaaagactcctgaaatgataaatcagggaactaaccaaacggagcagaatggtcaagtg
atgaatattactaatagtggtcatgagaataaaacaaaaggtgattctattcagaatgagaaaaatcctaacccaatagaatcactcgaaaAAGAATCTG
tgccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctaaggtcgagagatcgagaccaccctggccaacat
ggtgaaaccccgtctctaccaaaaatgcaaaaaaaaattagccaggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaat
cgcttgaacccgggaggcggaggttgcggtgagccaagatcacgccactgcactccagcctgggcaaaaagagtgaaactctgtctcaNNNNNNNNNNAA
GAATCTGctttcaaaacgaaagctgaacctataagcagcagtataagcaatatggaactcgaattaaatatccacaattcaaaagcacctaaaaagaata
ggctgaggaggaagtcttctaccaggcatattcatgcgcttgaactagtagtcagtagaaatctaagcccacctaattgtactgaattgcaaattgatag
ttgttctagcagtgaagagataaagaaaaaaaagtacaaccaaatgccagtcaggcacagcagaaacctacaactcatggaaggtaaagaacctgcaact
ggagccaagaagagtaacaagccaaatgaacagacaagtaaaagacatgacagcgatactttcccagagctgaagttaacaaatgcacctggttcttt Other - Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 andBRCA2 genes. Hum Mutat. 2005 Sep;26(3):284. PMID:16088935.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 60 NA NA breast/ovarian cancer exon:CDS:BRCA1:NM_007295:10/23
0 chr13 31791298 31791299 1001613 0 + BRCA2; c.156_157insAlu; RIP_Alu_chr13_031_02 ATGCCTATTGGATCCAAAGAG CACATTCATCAGCGTTTGCTTC SINE Alu Ya5 ttaatgtgaatagtttttgattccgaaccatgaataataagaaaataaataaaatttaaatgaaaataaaagctaatatatacagcttttaataatatag
ttaaatgccatcttgtaacttttgtgaactcttgttacacctttctatagattcgcaagagaatggattaatgatcttgtttaattaatatgccttaaca
aaagtaatccatagtcaagatcttaagcatttttttccttatgatctttaactgttctgggtcacaaatttgtctgtcactggttaaaactaaggtggga
ttttttttttaaatagatttaggaccaataagtcttaattggtttgaagaactttcttcagaagctccaccctataattctgaacctgcagAAGAATCTG
TGCCGGGCTCGGTCGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGACACCATCCCGGCTGAAACGG
TGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGCGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCCTCANNNNNNNNNNAAGAATCT
Gaacataaaaacaacaattacgaaccaaacctatttaaaactccacaaaggaaaccatcttataatcagctggcttcaactccaataatattcaaagagc
aagggctgactctgccgctgtaccaatctcctgtaaaagaattagataaattcaaattagacttaggtaagtaatgcaatatggtagactggggagaact
acaaactaggaatttaggcaaacctgtgttaaaatcttagctcattcattaattgtgtcatgctgggcaaatcagtctctctggcctctttttcctcact
cgaaaaatggagacgatgaaaataatgtctcataggtttggattaaattaaataatgtaggtacttagtaaatgttctctttcatccctcct Other - Teugels E, De Brakeleer S, Goelen G, Lissens W, Sermijn E, De Greve J. De novo Alu element insertions targeted to a sequence common to the BRCA1 andBRCA2 genes. Hum Mutat. 2005 Sep;26(3):284. PMID:16088935.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 59 NA NA Breast cancer exon:CDS:BRCA2:NM_000059:3/27
0 chr1 195663266 195663267 1001614 0 - CRB1; RIP_Alu_chr1_194_01 CTCCATGTTTGTCCGAACGC TCTTGCTTGTCAGGTAGGC SINE Alu Y tttagtcttacatcttggatacagcctttgaagaatccaccattaagttcagtctcttgcttgtcaggtaggccaccaatgtagatgacatctccctttt
cgattttccacgtagaagcagaaataaatcctaggttttgtgaagactgatacagttcaattttatatggcttgattttcaaagatatcaagtggacatt
tccatcattaagaacaaattttactactaatttgggagagtttggagtcagcattgctagtctgccgcgctctagccagacacggatatattgataagtg
ctgttttccaaagctagaagtaagcctgatggttgaagcgttcggacaaacatggagaggctgatggtgtctccatagctctcatcAAGAGTAAAGATGA
NNNNNNNNNNAAGAGTAAAGATGAcataaccagtggagtcatcctggccaaatctgcctgccacatactcttcaatgtcaaaatagaggaggaggagaaa
aaaaaagaaacatcttaaggctcaaaagacagaagggatggaagacgaaaattatacatttcacacacacacatgcacacaagcatacacactcatacat
agcttttaaagttcaggacaggtttattaaatagaataatgatttggcctctttctggacttctgagtttactttaaccctaaaataactatattttggt
ttgtagtttacacttcaggcatattgatcacaaaacagaccaaaaagatctctgcactgataaactaaagaatctcccctttgctgccctaaaatatggg
ccttaatggt Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- den Hollander AI, ten Brink JB, de Kok YJ, van Soest S, van den Born LI, vanDriel MA, van de Pol DJ, Payne AM, Bhattacharya SS, Kellner U, Hoyng CB,Westerveld A, Brunner HG, Bleeker-Wagemakers EM, Deutman AF, Heckenlively JR,Cremers FP, Bergen AA. Mutations in a human homologue of Drosophila crumbs cause retinitis pigmentosa(RP12). Nat Genet. 1999 Oct;23(2):217-21. PMID:10508521.
E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization NA 60 NA NA Retinitis Pigmentosa exon:CDS:CRB1:NM_201253:7/12
0 chrX 153783655 153783656 1001615 0 + F8; RIP_Alu_chrX_153_01 ATATCCAGATGGAAGATCCCAC GCTCCAGGCATTGATTGATCCG SINE Alu Yb9 tcgagctttaccaagttgtgaaaatgaggtggtattttttttttgtcaattatttagagcttcaggtacaaagtgttcaaagcttcaagtatatctgccc
tactctgagaactctgatgatttctaccagcaatattcattttaaatttgataatgatgtaaacttgtatttatttcctgacacaagcaaccattccaga
aaggaagaaagctgtaaagaagtaggctgagtaggtagggaacctctgcccacattgctactcactattgctgtacaccagaaaaagtgtgctcatccca
gcatgtagatgctcgccaataaggcattccacccgccaaattccagctttggatggtaacatttccactgtctcaaaaacaccttatAAAAACCAACAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGGTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCGAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAGAAAAAGAAAAACCAACAGGaacagaaattatttcttttcactaaaaaatgagcatgagatacattggtttatgcgaaatatcagag
tagacctaccaaatttggtagttccactacttttggacccctcaaatgcaaagtgcttgctacgtgacccttacagttgggggttgtggagattgagttc
tgaccactcccctccccccaggagatgagaaacagggtgactgaattctttgatggttgggacaggagaatgctactgcattatgattgacctacattcc
cagggtctttctgagcaaaaggtgtgtttcccattggccagatgtggactctgtgaaacagataagtcagggtgagttccctctggatccagtccactag
agctgcctacaagggtaaag Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- Ganguly A, Dunbar T, Chen P, Godmilow L, Ganguly T. Exon skipping caused by an intronic insertion of a young Alu Yb9 element leadsto severe hemophilia A. Hum Genet. 2003 Sep;113(4):348-52. Epub 2003 Jul 12. PMID:12884004.
E:Insertion-specific detection:PCR NA NA NA NA Hemophilia A intron:F8:NM:000132:18/26
0 chr2 144874060 144874061 1001616 0 - ZFHX1B; RIP_Alu_chr2_144_01 NA NA SINE Alu Ya5 aattctaatctaagtacctagaatgtagaggtaccccattgtgttccttttgtttggtttcacagattcttctcttggtagacaattgcaattgttatct
aatcaaggaaatgtaacggtaattttaattatcattttaggtgaaaaaccttacgagtgcccaaactgcaagaaacgtttctcccattctggttcctaca
gttcgcacatcagcagcaagaaatgtattggtttaatctctgtaaatggccgaatgagaaacaatatcaagacgggttcttcccctaattctgtttcttc
ttctcctactaattcagccattacccagttaagaaacaagttggagaatggaaaaccacttagtatgtctgaacagacaggcttacttAAAATTAAAACA
NNNNNNNNNNAAAATTAAAACAgaaccactagacttcaatgactataaagttcttatggctacacacgggtttagtggcactagtccctttatgaatggt
gggcttggagccaccagccctttaggagttcatccatctgctcagagtccaatgcagcacttaggtgtagggatggaagcccctttacttgggtttccca
ccatgaatagtaatttaagtgaggtacaaaaggttctacagattgtggacaatactgtttccaggcaaaaaatggactgcaaggctgaagaaatttcaaa
gttgaaaggttatcacatgaaggatccatgctctcaacctgaggaacaaggagttacttctcctaatattccgcctgtcggtcttccggtagtgagtcat
aatggtgcca Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- Ishihara N, Yamada K, Yamada Y, Miura K, Kato J, Kuwabara N, Hara Y, KobayashiY, Hoshino K, Nomura Y, Mimaki M, Ohya K, Matsushima M, Nitta H, Tanaka K,Segawa M, Ohki T, Ezoe T, Kumagai T, Onuma A, Kuroda T, Yoneda M, Yamanaka T,Saeki M, Segawa M, Saji T, Nagaya M, Wakamatsu N. Clinical and molecular analysis of Mowat-Wilson syndrome associated with ZFHX1Bmutations and deletions at 2q22-q24.1. J Med Genet. 2004 May;41(5):387-93. PMID:15121779.
E:Insertion-specific detection:PCR NA NA NA NA Mowat-Wilson syndrome exon:CDS:ZEB2:NM_014795:8/10
0 chrX 152657859 152657860 1001617 0 + ABCD1; RIP_Alu_chrX_152_01 TGGCCTTATTCACCCAAGGCTCCAAG GGATGGGGTCCAGCGTCCACAG SINE Alu Yb9 attgttgttgttaccgtgaacttcactgactccaggcccctggcctcctccctgcacacagcccgcctccagcctggccggcattttcccaaagtaggca
tttcctagctccagcgaggaccatggagtcagtgaattgaggagcctgaggtccatgatgcagagcccaggggccactgtggcatctctgggccactctg
gcacctggggaggcagtggggtctgtactgtcagtctagagacataaagaaagtgctttttgggccgggcgtggtcgctcatgcctgtcatcccagcact
ttgggaggccgaggtgggcagatcgcttaagcccaggagttcaagaccagcctgggcaacatggcaaaccccgtctctacagaaatttttaaaaatacac
nnnnnGGAGAATGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGCGCCGAGCTTGCGCCATGCAGTCCGCATCCGGCCTGGGCAACAGAGCGAGACTCCGT
CTCAAAAAAAAAAAAAAAAAAAAAAnnnnnaaataagccaagtgtggtggcggtgcctgtagttctagccacttgaaaaaaaaggctaaagtgagagggt
ctcttgagcccaggaggttgagcctgcagtgagccatgatcccaccactgcactccagcctgggcaacagagcaaggccccgtctcaaaaagaaaagaaa
gaaactgccttttgtccccagtgactcaggaggccaaggtgagagagtcgcttgaggccaagagtttgagaccagcctgagtaacatagcaagaccctgt
ctctaaaacaacatttaaaaattagccaggcatggtggcgtgcatctgtaggcccagctactcaggaggctgaggtgggaggatcacttgagcccaggag
ttggagactgcggtgagctgtgatcatacc Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- Kutsche K, Ressler B, Katzera HG, Orth U, Gillessen-Kaesbach G, Morlot S,Schwinger E, Gal A. Characterization of breakpoint sequences of five rearrangements in L1CAM andABCD1 (ALD) genes. Hum Mutat. 2002 May;19(5):526-35. PMID:11968085.
E:Insertion-specific detection:PCR TSD unavailable NA NA NA Adrenoleukodystrophy intron:ABCD1:NM:000033:5/10
0 chr5 112198789 112198790 1001618 0 - APC; RIP_Alu_chr5_112_03 CAACTCTGGGCCAGTTGC CCATCCTTCTTACGAGTGC SINE Alu Yb9 tcaaaaaaaaaaaaaaaaaattattattatggatactaagacatcattagaaaaatgtgaacctttatattctctggatcacgctcatagtttttgtctt
gttctaaattttgttttcatactcttttatactatactaatagaaatggattattttgttacaatatttgtgactattttttcctccacctatgggctac
acctctcaactataatttgcttaatttagtctcctctataatactataaactgttattacattaagtacactaatgagttaaactaagagttagtagtta
tcttttcacagtaataaatatattttggcttaaaactttcatgattatataaaacattgcttacaattaggtctttttgagagtatgaattctgtacttt
nnnnnGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAnnnnnaaaagtaata
taaaactctatatatacctgtggtcctcatttgtagctatcaagctggacacattccgtaatatcccacctccactttcaataatggctaaagtgtttgt
ctggctccggtaagtaagagtgccaaccaaaaatgcaagtgcaccatctacagcacatatatcagctttattctcagtgcaatgtgctgacaaattccat
aaggcactcaatacgcttttgagggttgattcctagtaagaaacagaatatgggtcatctaattagagttggaatttgtctctcattaacttctatgtta
ctgatattgaataaaagctattttttaatctatcctattgcccgtccctcactggtaaattaagaactttccatttagaaaaatgttcat Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- Su LK, Steinbach G, Sawyer JC, Hindi M, Ward PA, Lynch PM. Genomic rearrangements of the APC tumor-suppressor gene in familial adenomatouspolyposis. Hum Genet. 2000 Jan;106(1):101-7. PMID:10982189.
E:Insertion-specific detection:PCR TSD unavailable 60 NA NA Familial Adenomatous Polyposis intron:APC:NM:000038:15/16
0 chrX 153811533 153811534 1001619 0 + F8; RIP_Alu_chrX_153_02 NA NA SINE Alu NA agtctatctgtgtgagggtgctcggggtcaaatgtttcatgtttttggaccactgggttgaggtgtcatccacaattatccttttttcaagttctgtttc
ttctagtgggagtctgaattgtttcaaagctctcttactacgttgcgtgacaaaattctgctggcttgtattaggagatatccttgtggtgcatgcatat
ttctctacaatttgcttggtttgatttcccaagccttccaagttttcttcctcccctttttttgagaaatgagctgtgtgtttctttgttctatttgttg
aatcatttaatgacctaaaatcttgaagtactggagcatatgccccgtcatatgaaccttctacattttgcctagtgctcagtaagaaaaggttcttcat
nnnnnNNNNNNNNNNnnnnngaaattcttagtgccagtcactgtatgtatctgaggcaaaactacattctcttggattaatgtttccttcttttctattt
cttcctgaatttttttttcttgattgtgtgtattattttcatgtaaattatccaagttagtaagaaataggtttctgctgcttggaaaaaccatctcttt
gagtcctacgtcctttgtaaattcaccctttcctactaccactttgtttttctcagacaagaaattctgaccttccacagatttttctggtcctaaggat
actaattgctttggactggggccttgcccagagttcagagagttctttccatgagtcctttgtatccaccttgctgattctggcaagaatagcatcttaa
agaacgacatatctggattt Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- Sukarova E, Dimovski AJ, Tchacarova P, Petkov GH, Efremov GD. An Alu insert as the cause of a severe form of hemophilia A. Acta Haematol. 2001;106(3):126-9. PMID:11713379.
TSD unavailable NA NA NA Haemophilia exon:CDS:F8:NM_000132:14/26
0 chr10 90763030 90763031 1001620 0 - TNFRSF6; RIP_Alu_chr10_090_01 NA NA SINE Alu NA taatacctgagtctacagtacactttaacctctagatctttttaggcaggagttctgtaatacatctagctgattatgaaggaaaagtttcttaagcctc
agactattgtgtcttattgttacttgattatttttaactatgagtattcattataaatttaaacaaactgcctgataaatgctttatgctgagcaggtag
aattgtatgagaaataacaagatcccataatatgtcactgaaattagtaacattattttactctgaaattggcctattactctaaaggatgccatctcta
tgaaataaaatgataaaagccttaccagataaatttattgccactgtttcctagaaagcaaaaaatggaagcagagaaagacaAGAATATTCTAAATGTG
NNNNNNNNNNAGAATATTCTAAATGTGaacttctaatttttccttaattcagaaagaagtacaatcagttgcttgatgtataaaattaggaagctagatt
aagtgattaagaaggttacttttaccattcaatttttattctgaaaggttccggccttgccagaaactaagcaatattgtcttagtttttaaaggcaaga
aacctaaagaattcataaaataggttgaggttatttttcatatagacttattaaaataaataataaatataactactctaaaattttcttccctgtaact
attcttattcttaataccagaaaatggctcaaattgaaattttttttaccatattaatttaaagaatcctaactcccactgagccctggccccaaataag
aaaataattc Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- Tighe PJ, Stevens SE, Dempsey S, Le Deist F, Rieux-Laucat F, Edgar JD. Inactivation of the Fas gene by Alu insertion: retrotransposition in an introncausing splicing variation and autoimmune lymphoproliferative syndrome. Genes Immun. 2002 Oct;3 Suppl 1:S66-70. PMID:12215906.
E:Insertion-specific detection:PCR NA NA NA NA ALPS intron:FAS:NM:152877:5/7
0 chrX 138458220 138458221 1001621 0 + F9;F9; RIP_Alu_chrX_138_04 NA;NA NA;NA SINE Alu NA aacaggctcatttactttgtgaaaacttacactaaaattgtgtgtattttttgaatatatgttatacattaataaatagggtttttaaacctgtagttca
taatttagtgaaagtagaatatccaaacatttagttttaaaccaatcaattatagtgctaccatcatttttatgcattattgagaagtttattttacctt
tctttccactcttatttcaaggctccaaaatttctctccccaacgtatattgggggcaacatgaatgcccccaatgtatatttgacccatacatgagtca
gtagttccatgtactttttagaaatgcatgttaaatgatgctgttactgtctattttgcttcttttagatgtaacatgtaacattAAGAATGGCAGATGC
NNNNNNNNNNAAGAATGGCAGATGCgagcagttttgtaaaaatagtgctgataacaaggtggtttgctcctgtactgagggatatcgacttgcagaaaac
cagaagtcctgtgaaccagcaggtcataatctgaataagattttttaaagaaaatctgtatctgaaacttcagcattttaacaaacctacataattttaa
ttcctacttgaatctgcttccttttgaaatcatagaaaatatcagtagcttgaattagaccaattaattttctagattgcatcatattttaaatataaac
tatgtaatcatctacaacctgaattctttctgtgtccaatttgtccaatttttttctctaacatttatatcacaaagcaattaatttgtgtgatttctgc
atatgtattt Other;Other - Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
- Vidaud D, Vidaud M, Bahnak BR, Siguret V, Gispert Sanchez S, Laurian Y, Meyer D,Goossens M, Lavergne JM. Haemophilia B due to a de novo insertion of a human-specific Alu subfamilymember within the coding region of the factor IX gene. Eur J Hum Genet. 1993;1(1):30-6. PMID:8069649.
- Chen JM, Stenson PD, Cooper DN, Ferec C. A systematic analysis of LINE-1 endonuclease-dependent retrotranspositionalevents causing human genetic disease. Hum Genet. 2005 Sep;117(5):411-27. Epub 2005 Jun 28. PMID:15983781.
NA;NA NA;NA NA;NA NA;NA Haemophilia B;Haemophilia B exon:CDS:F9:NM_000133:5/8
0 chr1 8369222 8369223 1001622 0 - 1104685352214 TTTCTGAAGGCAGTGAACTGAA AACACAAAGAATTTGGGCATTT SINE Alu AluYa5 agctgggattttgaatgagatagtgttgaatccatttgagtacgttccctttatccgtcttttttctatttgtgaagtcctttcaagtcatatttttatc
ctctttcctttcctcacactacttctgcacccaaagttgcagcttttcccctgagagaatatatagtagatttcaaaacctttgtcttctgtgttaactc
tttgaggtaaactttacttgaaaatccaacacaaagaatttgggcatttgaggagtttgtatttccctggttactaatcatattgggcatcctataatga
gtttattggctgtttgtgtttctttttcatgaagggcctgtgtaagtcttttgcttatttttcaatggattgtccttttctttttcatttgtAAGAGTTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAGTTCagatattcatcttaaataatgtatgttcagttcactgccttcagaaaggaagctctctggctgtttgggattctgtcttggct
gggtttcagagctcaggcccagggagtggaaacccttatttgtgtggctttactgtctttatgagacagggccacacaagctcataggatctcaggaatg
ttctcattattgataatgcccaatgtgggaagaatctcttggcttgggatgagaggggttcctaagaagttctcttggctctattttattcttatgattt
atataggagcaatggtaattttttaatttttttatttttggtctctctgattctaaagaaaaatttggaggagagaatagttaactgtagtcctacaagt
tttcttaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 537 221 NA intron:RERE:NM:012102:13/24
0 chr1 64730667 64730668 1001623 0 - 1104685764890 TTGGCCTAGAGAGATCTGAAGC GGCCTTTATTCTGATAGCATGG SINE Alu AluYb8 tattaaactaggctaagaaaaaatgaacctgataatcacctttgtgccagaagacaaaaataactggacaggaagcccaggcagtcccagtggcggtgct
gtcttttacactgacgttaactctaacgatcagcggagtaaccgcacagcgctgctgggcacctggagcttattgtttccgtgtggcatatgatgaagta
tcagaacggggaggagtatatctccaagaaggaatgtgatgagcagaaaaactcatcctgtgagattggcctagagagatctgaagccaggagccatttg
gtcttgtccaatggcattaatgtacccacagacaaaggccaaaggggacatggaggccagagctgctggtcaacggcttgtttCCCCCTATTGTTTTCTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGCCCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCTATTGTTTTCTTacccaactccatgctatcagaataaaggccatccttccccgtatt
tttctcaagttatacaagtgccgttattcttcaagcaacaaagaattccactagccttttgctaaggataaaacatttccaaaatataagttgtttaaac
tgcaggtatagaataatttcttcaactgtcttctttttcccaaatgaataatgctacctagatgaaaacaatttttttcttcaccttttattccaaattt
ctttttttaaaaaaagcttccatcttttaaaattcaaacagaaatactgagggaagttccagtttcaaaccatcttttgtcaagaaaaaaaactagtgaa
aggtactttcaggaaatcaagtacagtatatgatttca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 520 166 NA intron:CACHD1:NM:020925:1/27
0 chr1 65828530 65828531 1001624 0 + 1104685764582 NA NA SINE Alu AluYg6 ttcaaaatatgttcttcagtttcaaagttgttttggctattctagattctttgcatttccatatgaatttttagattcatcttgtcaatttgtgtaaaat
agcctgttgagattgtgagtagcattgcattaaatctgtagataaatttgaggagagctggcatattaaccatattgagtcttctgacccataagcacag
tacatctctcattttagttaggtcttaataatttccgtcaacagcatttcatagttttcaatgtgcagatcctaaacatcttttgtcaaatacattacaa
agtatttctatttttgatgttattgtaaatgatattttaaaataatttctgtttcatcagttatccaatataaattcagtatcatAATATGAATAATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAATATGAATAATTTTccttattatccttttaatatctgtagactgtgtagcaatatcgtgctttcagtttttatattcttaatttgtgacttctg
tggtttttcctggtcagtctgtgatatggcttggccatgttcccacctaaatctcatcttgtagttcccataatccccaagtgtcatgggaggaacccag
tgggaggtaatcatgggggtggttacctccatgctgttcttcactattatggcggttacctccatgataatgagtgagttctcatgagagctgatggttt
tataaggggcttttccccacattcactctgtacttcttgctgccaccatgtttgcatgtccttccaccatgatattctaagtttcctgaggcctcctcag
ccctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LEPR:NM:002303:5/20
0 chr1 69834259 69834260 1001625 0 + 1104685763673 GGTATCATCGTCCTGTGAGTGA ATCCCAGCATTTACCTCTTGAA SINE Alu AluYb8 agtactaactttacaaccttactttccctgccttggctttcctaactgtgctaatggacacaaccacacttagtaaagtttaacttgtactgacttcaca
gcatgtcagatgtggtgaaatgatgcatggcattcctcatttcgacaacatttcagtctgccagatggcacttcaataatatattacggtgtattacaaa
gactgtacagatatcccagcatttacctcttgaaaatacttaactacaattataccatttaagtctccagtcacttttccttaacttccttagcttttac
aataaagcacatatttttattaaaaaacatttaataacatacccagtgagtgattgcctactcgtagactgttaaactgtctcatCACAAGCTACTTTAT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
ATAAACACAAGCTACTTTATgatttgatgtgagaatttaattactttttaagtgaatcttttatgcaattatccttaatcactcacaggacgatgatacc
tgtgagtctgcatctgcagaaggactgcccaggtgctttaaagcataagacttcttgttttctgttcacaggcaagtccattataagaagagcaccagcg
ttattctaaccagtttaagaagattatctcctttgctctttgcagcaatactagtgtcactaccctttttggataaaaagttaaaaatccggagaggtta
gataacttgatcaaggtcacacagcatactaagtgattaaaccggaacaaaaccctggaaatttggctccagagcctttattgttaatgactgtgcaaca
gctgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 588 269 NA intergenic
0 chr1 52222033 52222034 1001626 0 + 1104685768192 NA NA SINE Alu AluY tttagctacacaaatacttaccactgtgttacaattgcctgctacattcaatacagtaacatgctgtacaagtttgcagcctaggagcaataggctatct
attccatatagactatgtgtatagtaagctataccatataccatataggtttgtgtaagtatactctatgatgttcatacaactatgaaatcggctaatg
acacatccctcagaacatatccttgtcattagcaatgcaagactgtacttaaatactacaaaaatttagtagtaccaaaagtactacaaaaatatgagat
tttgaggccaggtgccgtggctcaggcccataatcccaggactttgtgaggccgaggcaggcggatcatttgagctcaggagtttGGCCAGGCTGATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGGCCAGGCTGATCTTacatggtgaaatccagtctctactaaaaatataaaaattagccaggtgtggtggcgcacacctgtaattc
cagctagtcaggaggctgaagcacaagaattgcttgaacccaggaggcggaggctgcagtgagtcaagattgcacaactacactccagtctgggtgacag
agcaagacactgtctcaaaaaaaaagaaaagaaagtaagggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtgaat
cacgaggtcaggagttcgagaccagtctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattcgctgggcgtggtggtggccgcctgta
atcccagctactctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RAB3B:NM:002867:1/5
0 chr1 46069039 46069040 1001627 0 + 1104685509087 TGCCTATCACACAAAGCCTAGA TGGCACATCATGGGTACTTAAA SINE Alu AluYa5 ggccaggctggtctcaaactcctgacctcatgatccacccacctcagcctcccaaagtgttgggattacaggcttgagccactgtgcctggcccaattaa
gtctattttgattgccctctcatgctgtcagtgtcactggtactaattgtatagtgagggtcaaggaaaagattctgtaaggttgtaacttcaatgagta
aattttcctgggaaagaacattctttttatagaaatgattctaaatctggtacagttgtgctgctttggtttacagctctgtggtatacatatttagtac
atgaggacagggaacttgtttggcacatcatgggtacttaaagtatatgtataAGTGCAGGAATTAGAGACGTAAGCCACTGCACCCGGCCCTCATTCTT
TTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCC
GGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTTAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAACAATAATAAAAAAAAAAAAAAAGTGCAGGAATTAGAGACGTAAGCCACTGCACCC
GGCCCTCATTCTTtgagagtctgaggcaggaggatcgcttgagcccaggagttcaagactagcctgggcaacatagttgagaccttgtctatacaaataa
taataatcataaaaaaaaaattagccgaggatggtggggtgtgcctgtagtcccagctactcagaaggctgaggtgggataatcgcttgagcctgagcag
ttgaagctgtagtgagttgtgattgtgccaccacactctggcgacagagtgagaccttgtctggaaaaaaaaaaaaaaaaaagccttttgtttgtctagg
ctttgtgtgataggcagggccttacaaaattaaagctgtgtagcctgggcaggttgctttgtttct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 696 384 NA intron:MAST2:NM:015112:3/29
0 chr1 46451635 46451636 1001628 0 - 1104685508952 NA NA SINE Alu AluYb8 aggtatttcatgatatttagtactttttaaagtttttgtagagacaaagtctcgctacgttgtccaggctggagtgcagtggcatgatcatagctcactg
tagcctcaaactcccaggctcaaactcctcacctcagcctcccagagtgctgtgattacaggcgtaagccattgtgcctggccgtatttagtgtattttt
atttagtccctcttgtcctcaactatgctcagtgtcttttaatctagagaccttctgttctattctccatatataaagtcatttgtcacgtaacaatggg
gatatgcttagagaaatacaccagcaggaggttttactgccgtgcaaatatgacagggtaaatgcacaaactagatgacatttAAGTATATAAATTTTTT
TGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATATAAATTTTTTtttaaaatatggaaaacaaaatgtcccagcacaattactgaatatcaatccctactt
gatctgctatgccaatatcaagtgccatatatcatatttgtgtatatgctgtgttataatcttatgaaatcactatggtatatgctgttcatcgaaacat
cgtatgttttggtcgtatgatgactgaaacatcatataaatatttgtgtatgtgtacacacttatatacacataaatgtttatatatatgtgcatatata
cacacatgataaatgtttatttgacatatgtagtctatcattgatcaaaatgtttatatggtaatcccagcactttgggaagctgaggaggacagatcac
tagaggtcaggagatcgagaccatcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C1orf190:NM:001013615:1/2
0 chr1 100766810 100766811 1001629 0 + 1104685456225 CCTGCATTAGAGTTAAGCAGCA AGTGACGTAGAAACAGGGTGGT SINE Alu AluYb9 caagcacagggagtttagtttggtttatgctgtttgagggatatctaagagatgtctgataagcagcagaaatggggtgatgactgtacctctgaaattc
cacagcagaggcttctaacacatatttggccattgctttcactgaggctcagaaggttgtgcccagtatccagagaaggatttcaaaattttcaaggact
atagctgagaaagggttttctggaaattgagagtgccaatttgctgtgaagcagggagaagacaggctatttctgagatacagcaaatagaagtaatttt
ttttcaccatcaatgatgacctcagtgacgtagaaacagggtggtagctcctggttttcttgtttcttaatcaatataatttagactttCATGAAATTTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAACATGAAATTTTacaatatcttagatatttcttagttatgttgtgattttgtcaatgctgcttaactctaatg
caggatgataattgtggctaattgcctaaaagcatatgaactttttttcccatcagtgttatatgtgagagaacacacacacacacacacacacacccct
ctttaatatgaatttgatgtcctcacttaaattacatgaaataattcctaaatgcttgaaaatacaaaaccctcctcatctagttcctatctcaatcaga
caaatattttaaagcagattcaaaaaatagactatactaaacttcttactggaaaaaaagtcacttctggacagagaccaagccaaagtaattttagctc
aaattggttttcctggaaaaactggaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 481 143 NA intergenic
0 chr1 104376005 104376006 1001630 0 - 1104685271869 AATTCAGGTCAAAACCCAGAGA CTCGTGTCTACAGGCTCCTTTT SINE Alu AluYa5 taattcttttgttgaatgtaacattgtatacctgaccttataaaaataataagtaaaaatatgactcttgtactttcttaatttattttccattgtggac
caaacaaacttcaattcatgtgaagattttgtgttaatcacctcagctaataagtctataaataaaattattaaaaagtaatgattttaatatttatatt
ttgtaatagctaaaatctgaatgcaaatgtgaagccagagacagaggaccaaaactcttggaaatctctggtacaggtatgaaatgagagctcatgaaga
agtattcttgggctcgttactgagggatgcaattcaggtcaaaacccagagagacactctatacccatgatgctttatagttaataaTGTAATTTTTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATGTAATTTTT
TTTagggatcaaaaagcaacaaactacttttaataggagctttgtgtccagggtgcagctggagagtcaaaaggagcctgtagacacgagatcagctcca
tatgaattcataaaacagcaccagcatcagccagagactgagtttctaagtcgacacagttatgcttagccaccttcttggtagttaacctgagatagct
gtgaggaacacccagtagacaatgattttattcaatagagaggtttttttaaaaaaattaaaaattatgattaaattagttcactgctgaaaaatggaaa
tgatataggatcaagtaatgattcataggccatagaaactttatcagtatttgtgtatgtagccaaaatatacaccaaagtaacacacca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 460 158 NA intergenic
0 chr1 104940174 104940175 1001631 0 - 1104685271665 NA NA SINE Alu AluYb8 aggagaagaagctatgttaataatggagtatatttggataggtccctgaaaggcaacatagagtaaagaagtcataaaagtaaagaagtcactttgaatc
ttgtcaattcatgactgaattaatgtgatccaatccaagcctatctgtcttatgggataaaaagataaatacttttgggggaagttaacaccatccagag
aattaaattttctttacagtatttctattgcaatgtctacaatgcaatttaaaaaataatgaagcatacaaggaagcgagggctgatgagatattaatag
aaaaaataaaagaaacaatgaaaacagacctataagagatcaaatagtaatcacacatttgacttttaaaaaggtgttattaataataggaCCATTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACGAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCGGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACCATTTTTTcacataactaaaaaaatgaaaaagaattaaatggaaataaagggtttaatagtggataagaggaagctgaag
gagtaattgctaacctgtaatatgggtcaaaagaaaattgcctgactgaagcaaatatataaaataatagaaagttagaagaataagacatataagtatg
ctgaacaggaaaaacggtgcataattggtgcccaaggaaaagaagaataagtagagaagaacaaatatttcagatgataatgattgagatatttttaaaa
ctgatgatatctagccacagattcaagagaatctttgatcttcaagtagaacaaatacaaaacaaaaacaattttaaaaatatacatatataattgtaaa
gtctaaaaaccaaaggcaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 105032635 105032636 1001632 0 - 1104685271641 GCTCATGATGTCTAAGCAGTCTC TGGCATGAGGTACTATGAGGTG SINE Alu AluY tttttcagtttgatatttctactaaaatttctgtttgactatccagagtacctggtactataaacttgagtctctccgcacagaaagcagatactatttt
tgcatacagtaggacaagataaaggtaaaagaggaactagttgagtgtttatgctagatgctgtgttatgtgttttataaacatcatgaactagagagat
agctcatgatgtctaagcagtctctgtttctacttatgaggtaatacagaaaaatataacatgctgtttaaaattatggatcatgggaacagacttcctg
ggtttaaatcatagctatacttctactactactagtgatgttactgggtttaaatcatagccctgcctctattactaccatgtgacattattAGTATTTT
TCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGA
CTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGTATTTTgttaccttgataaagtgccttaatttttttttgcttcagtttcatcatttccaacatacaggt
ggtaattgcacctataccacaagattaaatcaattaagtgtgtttgtgtggggggatgcattttaaagagggcctgacaaatgcaataggtaagtgtttc
ctatgaatattacttttgttttctcttaatgtaagcatacctgtacatacttatccttggttttatttttgtttcacctcatagtacctcatgccagagc
tgatttttggagtctttatcaattatttgttctggcttgaaaataaaaactgggttaattcatttcacagtacactgaataagaaaacacctaaggattg
ttgtagaataaaggatacctaacagtatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 595 459 NA intergenic
0 chr1 113192047 113192048 1001633 0 - 1104685712690 NA NA SINE Alu AluY agtcgcatcagtcacattatttaaattagcgccaaactttgtcttcagtaactcacttcaagatgcaggcctggctgggtgcggtagctcacgtctgtaa
tcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaatcccgtcGCGGTAGCTCACGTCT
GTAATCCCAGCACTTTCGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCCGTCTCCACTAAAAAT
ACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAG
TGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGATGCAGGCCTTTGGCCAG
GCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGTGGGCAGATCACGAGGTCAAGAGATAGAGATCATCCTGGCTAACACGGTGAAAC
CCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCC
AGGAGGCGGAGGTTGCGGTGAGCCGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCCAGACTCCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAA
CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCC
GTCTCCACTAAAAATACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGG
AGGCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCG
GTAGCTCACGTCTGTAATCCCAGCACTTTCGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAATCCCGT
CTCCACTAAAAATACAAAACATTAGCTGGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
GCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAACCTGGGCCACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGATGCA
GGCCTTTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGTGGGCAGATCACGAGGTCAAGAGATAGAGATCATCCTGGCT
AACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCAGGAGGCGGAGGTTGCGGTGAGCCGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCCAGACTCCCTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAcccaggaggcggaggttgcggtgagccgagatcacgccactgcattccagcctgggcgacagagccagactccctctcaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatgcaggcttttgtcgcatcaatttcagcaacccgtgtagaggtcgatgaatttcagatttggaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 76629231 76629232 1001634 0 - 1104685762061 AGCTTTTCACACACAGGAACTG GGCACATTATTTATGCTCCTCA SINE Alu AluYa5 attagaagcttttcacacacaggaactgcctcagtgcaagagctgaaatgactgtcatcataataacaactatattgatcacttaaaagattaataagca
ttttgggccaggcgaggtggctcaagcctgtaatcctagcactttgggaggccaagatgggcggatcacgaggtcatgagatcgagaccatcctggctaa
cacggtgaaactccatctctactaaaaatacaaaaacattagccttgcgtggtggtgggcgcccgtagtcccagctactcgggaggctgaggcaggagaa
tggcgtgatcccgggaggtggagcgtgcagtgagccaagatcgtgccactgcactctagcctgggcgacagtgcgagactccatctGTATTTTTTTTTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGTATTTTTTTTTTTatatatatatataagcattttaataattggaggtaaaatgatttgaggagcataaataatgtgccattttg
ttttacatatgaagttatagcattatatttcccatgtaaaaacctaaaacatttctaaccacaaaacaatttacaggttcaacctcttcttgtcttccta
gaggacatgtgcaagagaaaacagtttattttctagacaggtttctgttttcttggcacacaaactcctggcactgagagctgtgaggtacacaatggtt
tggggctggcaagctctgagcatgtcagttcccagcagccaggctcctctgaatcctgccaaagccaccaagtaacacttagtctttggagccaaaagcc
cttgggagcaaacca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 788 460 NA intron:ST6GALNAC3:NM:001160011:2/4
0 chr1 95115290 95115291 1001635 0 + 1104685457522 GGTTGACTTTGCTCTCTTTGCT AAGTGGTCAGAGAAGAGCCTTG SINE Alu AluYa5 atgatactgtatcatgtctctcaacctgatttctaactttgagttctcgtgccactggacgggtggaaaacttaatttgttattcttgagctatccctcc
tcggagttatatgaggtttcaggtgtccctagacattaacagatataggttgcccttgagacatcatcctcccatctttatggccactcaaaccctgctt
gggaaataggaatcttttacctatggtcacctatggtcctatctgccttgatgtgctagcactaggtgactacctgtcctggtcacctagaagccccatg
tctctggtaccccctcactcccaggcaaaccaggaccctggaagtggtcagagaagagccttgccacttctccaagctgtgtttaaCCCCGACCTTTTTT
TGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAACGGTGAAACCCCGTCTCTACTAAA
AATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTG
CAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCTAAGAAAAAGAAAAGAAAAACACCCCGACCTTTTTTcaga
cctggacttcagtcagacccatagactttgttctcttcccagcccagagagtgtcattttctaatgtggggctggaggaaacctgcacactcgcctgctg
ctccaaggtgtttggtctatattgggaaactcttttcttcaccttttcccctggtaggtaagggcttaaagagcctaaattttggaaaacaaaagccagt
gagaattgaagactggatgtcttcttgcctccactccccacctggccccctaaccttaactgggggaatgagcacagagcccgagtcctgcttgaatggg
gaatgtggagagaagagaaaggagaaaatacacaaggcggagaaacagaagcaaagagagcaaagtcaaccatcatacatgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 730 443 NA intron:SLC44A3:NM:001114106:12/15
0 chr1 77406916 77406917 1001636 0 + 1104685761921 CTTCCCCTTTTACCAAGCCTAC GGAAGGAAAATGTTTGGCCTAT SINE Alu AluYa5 tcatatattatgcatatctacatttaaaaagtagaaaatctatccagttttcttgttcaactatttcctagaacatgagtgtataaattgtatgtataca
catttgtgcgtgtgtaaactgtttgatttacatttttcctgcaagacagcaaaatgctaattgttttaacaggaattcttgttggccaacaaggaaggaa
aatgtttggcctatattttcctaaaatatgactaaataaacaagtaaaaggttaaacatacatatttaattcaatgagccaacatttttgagtgcctaac
accaggctctaggtacttgccagctatatgatacatgagacacaggccctcttagcttacagtctaggaggagatagatatgcttttTTGAAGCAATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATTGAAGCAATTTTagtggtctaggaacacacaggaaattgtgtcttacttttggtaggcttggtaaaaggggaaggattatctaagaagacttcat
aaaagaagacttcaaatattaagcgtattcacaatcttttatatttaaaatgaactttcaaagggagaaaatagagtataataccattttttacatttac
atttttatttcttatcacatattcataaaaaacactggaagtatattgaaactatagtcactatagtttttccacaattaatacaattactaaaactaat
aaacttggaattttaggtcaaatatgaaaaatacacatttactataaaatatatttactgtaaaagaaagttgacacaggaaaactcactataatactct
aaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 587 271 NA intron:PIGK:NM:005482:4/11
0 chr1 84685863 84685864 1001637 0 + 1104685460278 NA NA SINE Alu AluYb8 catagtattcgaagttctggccagagcaatcacgtaagagaaagaaataaagggtattcaaataggaagagataaagtcaaattgtctctgtttgcagat
gacattactgtatatttagaaaaccccatcatctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgc
aaaaatcacaagcattcctatacacaaataatagacaaacagagagccaaatcatgagtgaactcccattcacaattgctacaaagataacaaaatacct
aggaatacaacttacaagggatgcaaggacctttttaaggagaactacaaactactgctcaaagaaataagagagaacacagacaaatgGAATGTTTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAGAAAGAAAAGGAATGTTTTTCatgctcatggataggaagaagcaataatgtgaaaatggccatactgcccaaagtaatttatagattcagtg
ctatcctcatcaagctaccattaactttctttacagaattagaaaaaaaaactactttaaatttcatatggagccaaaagagagcccgtatagccaagac
aatcctaagcgaaaagaacaaagctggaggcatcacactacctgacttcaaactctactaattgtctacagtaaccagaacagcatggtactggtaccaa
aacagatatatagaccaatggaacagaagagaggcctcagatataataccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagcaac
ggggaaaggattccctat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 79354671 79354672 1001638 0 - 1104685761440 NA NA SINE Alu AluYb9 tgacctttaatgactgaagtgtctcaagcgtcatttctcagatctcatcactttttcatttacattcattagctaagtgatcttatcaagtcctgtagcc
ttcaaaacatagtagcaactcataatattatctctggccaggaattaaccctttaacttcaatattaaaatccaattgcacacaatatgtctttatttgg
ggaccaaataggcatttcagacttaacatgtccaaaaccattatcttgattcccactatctacctgcttccaaatctttccttctagtcttccccatcta
ggtaaaggaccatcacattctaccagtagtcaaggcaaatattttaagatcatctctaactcatctctggaatagaattcctactctataattGATTTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAGATTTTTttctttaaaaaatataagtatacagaattttcttaattctacttatttttcattacatactcatttatccacaccaaaacttatttattta
atcttcaattcatttttaaaaataacatcacaagcactcatgaacctatcattcaatacaaaaagggtactcaatggataatctatgcatcccccagcct
tccacaacatccgcctgccactcctaacccaagtaataaccatcaagatgcttcattcactatttccttgctgtaggtttatatatttttaactcatctt
tatgtattcctctacattttattagcttcttaaaaacactttcatggtgtatgtacatttatactcaatattatattgctgaaattcatctatgttgttg
ca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 92940121 92940122 1001639 0 - 1104685458125 TGGATTGTTGCTTATGCAGGTA TTCCTCCTTGGTTAGAAAAAGA SINE Alu AluYa5 tgtataggataacatctataacaagcaagcaagagcttttctcaaaaataaatgttttttaatctgcctgtcttgccaattttaggttttttggagaagg
aaggtataacttaccatgtattttgaacaacttttttttactttttaggcttactctttagtagatcgtgaggttggttactgtcaaggaagtgctttta
tagttggattgttgcttatgcaggtaagttaatataagtattaaatgtccaatgaaattttttattaagttggattggagagtttaaaaagcatctttgt
tttattaaatataagtggatatgggtattttttcctaggcataatttgaatacaaatatttagtttgcattttaaaagattaaacatgtTATGTTATTTT
ACAGTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTA
AAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGACGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAATATGTTATTTTcagtaatatcttaccaccaaatgaaatttcaacttcatgatagatacatttttactgtaatattctactaaagc
ttgtatctacagtagtttaaaatcttatttgttaacatttaatgaagagtaatctttttctaaccaaggaggaaataattaaagtgttggtaagaaaatc
ttatttatattgtacaacatctttagagatttatagagaatttaatttatcatggagctaaaagcttgttatgcatacctcactgcatgccctaaaatag
tggtactcagccacttttaccccctagggatataactttgttattgagtgtgcagtgggtttgggtggaatgttttcagaattcgggggtaggataatca
tagctttgaagggaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 670 343 NA intron:EVI5:NM:005665:5/18
0 chr1 179314049 179314050 1001640 0 + 1104685260820 GTTATGAAGGGTTTTTGCTTGG CACTCTTGCATCTGTGAGAAGG SINE Alu AluY ttggagcacaagctgtttcctgtctttaaagcctattatctatttcccttccaggtggaggttgggctgcctgctaatttaatcccctgggcttccccct
ctgccttcaagatctcacagacgttcaggcttcataaagagggcacttttgtgtcttcctcccctgaaggcctccatctaccatggcagcaaaggagctg
ctattttgggaaacagcagcagagttgggagggttgttaattgtttgtcaaacccttccatgggggggcaagaaaaagagcagagcagtgcccttgcctt
cactctatttcactcttgcatctgtgagaagggaggggaaaagaggactccttgtccttttcaggcacaggcacccaaactaattTTTTGTTTTTTTTTT
AACAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA
CACGGTGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGG
AGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAATTTTGTTTTTTTTTTtcattcttctacccaatggaaagacataaacaaacataatattgtccaagaagccaatcaaaatagtttaaaaatcatttat
aacctcaaaaacaaaacaaaaacagccaagcaaaaacccttcataacagaaatgaaacaccaggggttttgccgtccattctgatcaaaccaccgcagcc
aaactgactaagcagatccccaagccccgccaacaccccactgacacacatgaaaacaattctagccaggcacactaacgggataattcaccatgacaca
cactcaccccatcacagcacagacaagttcaaaatcaaacagaaaaagtcccagactaagaaaaagctactcgggactgtgacctcagaggcccccatgt
gat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 537 220 NA intergenic
0 chr1 158314310 158314311 1001641 0 - 1104685104224 CCAGGACACAAAAGCATAGACA CTGGAGGAAGGGAACCTTTTAT SINE Alu AluY acacaaaagcatagacaagattctagcttttggcttggcacggtggctcgaacctataatcccagcactttgggaggctgaggtgcacggatcgcttgaa
cccaggagatggagaccagcctgggcaacatggcgaaaccctgtctctacaaaaaatacaaaattagatgggtgtagtggtatgtgcatgtggtcccagc
caccttggaggttgaggtgggaggatcacctgagcctgggagctcaaggctgcagtgagccgtgattgcgccactgcactccagcctggacaacagagtg
agaccttgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggacccgtggtgcaaaataggaaaagagctGGCCACAGTAGGCTCTTTTT
CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGA
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA
GGCCACAGTAGGCTCTTTTTtgtcacttggagaacagggaacaggtgatacttttgggagaaaataaaaggttcccttcctccagcagacacagctctga
gctgggtgcaggaattggcaagctgaatgcagttcagtcctcaacttgccccatcagcaggtgcctttgtggcagccctgagatcagccaaactggggag
gcttccctggacaagatcatgagacatcttgtgcaaaatctggcaagtggaagaggaagcatgatggggaagacagcagacagttgaggatatgagttta
gtggagcagggaggccaatctggttgattgcaaaaatttgtataaattcaagggggatggggctctagaaaactcagagcagaggaaagatatggttgaa
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 760 463 NA intergenic
0 chr1 163925927 163925928 1001642 0 + 1104685471570 GGTCTGTGGTGACTTTTTGTCA GATCCAAAAAGCCTCATGTCTC SINE Alu AluYa5 gctcatgcctgtaatcccagcactttggaaggccaaggcaggcggatcacctaaggtcaggagttcgagacgagcctggccaacatggggagactctgtc
tctactaaaaatacaaaaaatagccaggcgtggtgtcatgtgcctgtaatcccagctattcaggagtctgaggcaggagaatcgcttgaacccaggaggc
ggaggttgcagtgagccaagattgtgccattgcactccagcctgggtgacagagtgagactccatcacaaaaaaaaaataataataaacagaaactagtg
ctaaggtattgctatggctgctgcattttgctgtaataaaccatccttctctgtgatccaaaaagcctcatgtctcttgctagaatatatatatgtatTT
TCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACA
AAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGA
GCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAATTatatacatatattacacataatt
gtgtaatttacaactataatatagaatatatgtatattatatagattatatattattctatgtgtataacatagcttatatgtgtataattatgtatatg
tatattatatgtgttttatatgtatatgtatgtaatatatacacatatacacacacactcttgaaagcagggaaactctcagacccgtcacagtttctga
cgtaacatacttatgacaaaaagtcaccacagacctaccactcagctatccatgattcttattttgatgtattctcttctgaattttctttctataatga
acatctggtacttctgatctttaagactataaaaagtttaactatcagagtccagaatcaagatggccgaatagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 581 305 NA intron:ALDH9A1:NM:000696:2/11
0 chr1 216068467 216068468 1001643 0 - 1104685476127 NA NA SINE Alu AluYa5 tttgaatttgcattttactgatgattagtaatactgagcatcttttaatgtacctgttgacatttttatatcttctttagagaaatgtctgttcatattc
tttgcccactttttaattggcttatttttcttgctgttgagttgtaaatgttctttataaaatctgaatattgacccttatcagatgagtggtttgcaat
ttttttccccagtttgtaggttgccttttcatgttgttgattgtttcctttgctgtgcagaagctttttagtttagatttagtttagtttgaagcttttt
agtcccattttatttatttttgttttggtagccttttttttttttggtgtgatattcaaaaaatcatttccaatgtcaatatTATAGGTAGAACTTCTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAATATAGGTAGAACTTCTTTtcctcttctaggatttgtataaattcagatgttacatttaggtctttgatccattttaagttggtttttatgta
tggtataaaatagcatccaatttcattcttttgcatttggaaatccagtttccttgcatcatttgtcaaagagactatcagttccccacagtgtcctctt
ggtgcccttgtcaaaaattagttgaccacatatgtttcaatttatttctgggttctctattctgttctgttggtctatgtttctgtttttatgctagtac
catactgttttgattattgtagttttgtaatataactttaaatcagaaagtatgatgtctctaacattgtttttattcatactgccttgaatattcaggt
ttcttttg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SPATA17:NM:138796:9/11
0 chr1 220937321 220937322 1001644 0 + 1104685475059 GACACATGTGAACTTGTGCTTCT GAACCACACCCAACCTCAGTAT SINE Alu AluYb8 tttaatatacggagtctcactctgttgcccaggctggtgtgcagtggcacggtctcagcttactgcaacctccgcctcccaggctcaagcgattctcctg
cctcagcctctcgagtagctgggattacaggcatccaccaccgcgcccggctaatttctgtatttttattagagacagggtttcaccatgttggccaggc
tggtctcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtactgggattacaggcatgagccactgtgcctggctgcaacagttttta
atacagaaatcgactgaactatggcaaaatacctccataggcattattcataactattttaaggaaccacacccaacctcagtattTCCACTCCTTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCTTTTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAATCCACTCCTTTTTTcactcatttcagctatagcattaacttctaaaacatttagaatgtattgatatcaaaatcaagc
gcttgctactgtaattgtttcacttttcttagaaacagatgactcagaaaaatgattaagaagcacaagttcacatgtgtcagagtatatgtactgacaa
ttaagacttgaattattagcactcaaattaactgctcatatccaatatggtataaattggaaaatgctttcattttcaaaatattggctattaattgtca
ttgctaggaaaattgacagctcaaaagatcagttaaaggaaaagatggaatagaaatggacgattaaagagctaagttaattttgctaaaacgtattcaa
tctatataagaaaaaataggtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 518 183 NA intron:AIDA:NM:022831:2/10
0 chr1 187099474 187099475 1001645 0 - 1104685258998 NA NA SINE Alu AluYb8 aattagactgttacaaggtattttatgtaggctcatagtaatcaaaaagcataaacttaaagtatatacacaaaagataaagataaatgaattaaagcat
acagaaaatcatcaaatcacaaagaaagaccacaagggaggaagaaaggagcaaatgatttacaaaacacttagaaaacatttagtaaattgacaatagt
aagttcttacctatcaataattactttaaatataaatgaaataaattagttagaaaacagaaagtgcctcaatgaataataaaataagatatgtctctat
actccctacaggagactcatttagatttaaagacagacataggctgaaattgaagggatatcaaaaagatatcccatgccaatggtaatTCTTCTTTCTT
ACACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA
GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATCTTCT
TTCTTgtggtctatatttacagaagatgaaatagactgtagtcaaaaactatcagaagagatgaggaagattataaaataaaaaggaggttaattgatca
acagtataaacaactataaatatatatgcatccaatattatagcactcaaaaaaataaagcaaattgggccaggcacagaggctcacacctgtaatccca
gcattttggggtgccaaggcagatgggtcatttgaggtcaggagttcaagaccagcctggtcaacatggtaaaaacccatctccactaaaattacaaaaa
aatgagccagcgtggtggcatgtacctgtaatcccacctacttgggaggctgaggcatgagaatcacttgaacccaggaggcggaggttgcagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 187513663 187513664 1001646 0 + 1104685258851 CATAAGGAAATAGTGGCAATGGA TTTTTCTAATTCGTAGGATGCAAA SINE Alu AluYa8 tgtaaattttatttgtagatgtgattaatgtagagggatttgcataataatcacttttctaaaaatgcatatgcataggtgaaaccactggttgttccta
tttaaatacacatacatgatgatatacatttggaatgcaaatataaatattagtaaacttaatagtgatattttatatattatatatacacttcattatt
attcatagaaatcaaatacttttgatattttaattcctattggagtaggtttctataatattcatataattaggtttaaaaattgtgtttttctaattcg
taggatgcaaataaacattagtccttctgttactggactaatgtgttactgaatgaaattaattttttaaaagatttagagaggttatTGAATATTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAATGAATATTTTTTaggtagattttgtaaaaacatgtttatttgacttaggttttatgtaatcagaaataagaggatggataataacaaaaaaaaat
gagcttttaaatatccattgccactatttccttatggaatgaatatggatacatagtttcattacataaatatagactatctgtgtagactattatattt
aaaaatattctatggaacacagaaagtatgagtatttttctgcatacatttttgaaggcacaagtaaaccaattgggggcagatttaaattaaaagaaaa
cacaaaaaattagaccccttgaaataatgcattttgttttccaaggctctagcaattttaattactaatatttgatattgactcaattttacactaatca
ctatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 549 233 NA intergenic
0 chr1 194420171 194420172 1001647 0 - 1104685256946 NA NA SINE Alu AluYb8 ttcttggagactggcttccaacaaatgtggtatttctcattttctccgaagggaagtcgagattacatccctaaagatgatccacactcaactttgcact
ggaatatctggtaagaaagattcaaaaaagaagtgaaactaagacgttttaaatatattgggtagatactaaaaaaagaagtaggaactttgaggaaata
tattataaaactattttttccataagaaagagtatttcaaatagtctctactaaaaataacgtatggccatgtgcagtggctcactcctgtaatcccagc
actttgggagaccgaggcgggtggatcacttgaggtcaggagctcgagaccagcctggccaacatggtgaaaccccatctctacATATTTTTGTATTTTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGTGGATCACTTGAGGTCAGGAGATCGAGACCATCCTGGCTAACA
AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAATATTTTTGTATTTTTtagccaggtgttgtggcaggcgcctatactcccagctactccagaggctgagtgaagcaggggaat
cacttgaaccctggaggcggagtttgcagcgagccgaggtcgcgccactgcactccggcctaggtgacaagagcaaaacaccgtctcaaaaaaaaaaaaa
aaaggcatgtatgagtgagtttctcccaaatatataaacatcataaaaccataactgacattttgatggaaaatttcttccactcgagtcatattcactt
gtagtaaatcttgatagtgagcttgcactagctttcattccagtgaagctgaaaccaggatttttgtctacactgtgtcttctccccatggtagagagga
tagtgtggattcttaggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 195278495 195278496 1001648 0 + 1104685256795 NA NA SINE Alu AluYa5 atttaaaagttgattcatggacctttaactttcagctatgacagaggagattatatcaaaccagcacttctattaagaaccagaaaatctgaaaaacagg
aagcaattcgaggtatcagaaaacctccaaggaacttagtcaaggaagtaaggttctggaaaaagtgtattcaggtgagttcaacatctatgtgaggctg
ggcgtggtgactcacacctgtaatcccagcactttgggaggccaaggcgggcggatcatctgaggtcaggagtttgagaccagcctggccaacatggtga
aaccccatctctacaaaaaaaaaaaaaaaatagccgggcatggtggcatgcacctgtaatcccagctactcgggaaagctgaggcagTCAAGAGATTCTT
CCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAA
AAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGC
CGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATCAAGAGATTCTTcctagaaggtgga
ggttgcagtgagcagggatcgcaccactgcactccagcctgggcaacaaaaggagactgtctaaaaaaaaaaaaaaattctatgtgccatttttttctct
tgaggtgtttgttgactctaagtctgacctgagaggttagatgatagagaatggtaagcttaggcatacagccagcagaacttctgaaaatctcatggag
ttgaagatagaaaaatgagaatttcagtaaaccaaagcagccaggacttgaagaataaagaatttagaaggataggaagtgtagagatatgagtttgagg
ctctgcaccagcttttccctaaggtactgcttatccttgacttgtatagaggcataggatgagaagccaagcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:F13B:NM:001994:10/12
0 chr1 230654396 230654397 1001649 0 + 1104685320249 ACACTGGAAGGCAAAACATTCT GGAGAAAGCCCATGAGTATGAA SINE Alu AluY tacacatgcttggcttcctctcgatataccaaatcaagtcaatggatggaaactgcatttctagcttctggcacattctttacagtttgcttgccaacag
gagatactaaaaaacctcaagataaggctgtgggatcacttttatgtaggcatattgatttcctctttgctccataacaaatgtacacatcatcaactta
tgctcctaattaccatgctacatagggatcaatacaaagtcagctccaggttaaaaataagtgcaatttttcacatttcttgtctagccaataattttct
gagtctattctctcttctctctcaaaagcatacactggaaggcaaaacattctgtagaccaagaaggtcactgaaaatgtgttagtAAAAATGTGGCATT
TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATGTGGCATTatcaaactgtaagaataacaagtaattccattagatggcatcctcagaggatcttttattttactgctgtattctaaaaacagtattac
ttgtccttttgcactcaccatcgtggacttcctgggatggcttaatcctgtaaaagggacactcattaacttattcatattcatactcatgggctttctc
ccctgcttcctgatgcctaaagctaagtttcctaccagaagacttcttggttacagctgccaccacttcctggcttcctgaacatgatcagcaaagaggg
ggtgtcctatcttgctcacagttaacagacaccacggtcactgccaagtactgtagtgtatgcactccacaacttcagaggcacccaggaaggcccc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 570 260 NA intron:SIPA1L2:NM:020808:8/21
0 chr1 244055946 244055947 1001650 0 - 1104685469765 NA NA SINE Alu AluYa5 tctctatttaaaaaccaaaacaaaacaaaaacaaggaaatcctgtcacatgctacaacatggatgaagcttgcagacactacgctaagtgaagtcagcca
caaaaagataaacactatttcattccagttatatgaagtatctaaagcaggcaaattcaacgtaaaaaggtggttgccagagactggagggaggagaaat
ggggaattgttcaatgggtatagagtttcagttttgcaagatgaaaaagttctggatgactgttatacaacaatgtgaatatacttaatagtactgaact
gtacaccttaaaacctagtggcacaaatacatgatgcatatttttccatttttatttaacaaatacttaattaaatacaacatCCTAGCATCTGCTTTCT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAGAACCTAGCATCTGCTTTCTgtactagatgtaggagcagagatagatgattaaggcagaggaggtctttgccttcataggaaggtcgtttagga
gaaaatgacgtggagttttcctagagtgacttcaattctagacccagatacgtcattactcaggcagtgaccttgggcaagttacttaattcttctaaac
tttagatttctgtagatgtaaaataggaataattagtatctgtctcacagattgtcataggaattaaataaaaatgtatttagaataatgacacatgttc
agcatgctcagtgaagttctgttttttgctgtgctcatcaattcctctctcacaggggcttccagactcatggaacaggtaggagaaagccctacccaca
acaaagccc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SMYD3:NM:022743:10/12
0 chr1 244658966 244658967 1001651 0 - 1104685469552 GCATAGATAACTCTGGGCAACC CTTCTCAGGCTGTGACTCCTTT SINE Alu AluY gcgtcctacatttgaaggcctcttaagatgatacttggcagtgctatactgtttttaatggtatctttaataatggcatgtcttacaatccatagcatct
tacatttgatgaattttagtaagttataccataaggttatatcttgattccctttcttagagttgtatcacccaagagtatcactggttgcagtggacag
tgtggcttctactcaacattctttccaatccagctcattacatggcagttttgcaggtttggtggggtagacttcccttattactgtacctgtggtgggt
tcccattggcatagataactctgggcaaccttattccctgtctacggtggttggttctgtggtgggaacaatacctgatctgtcctatGAGTCTCACTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAGTCTCACTTTagagcttttgtttggtaggaaggaatgcttgtgctctccccttttatatgagtacagggtagttccaggacccattgg
catctataatattcctgagggggagccagactgagctgcaagctagctctggaagagggcagagcagagggaactggagagaaaggagtcacagcctgag
aagccatcacgaggcagcagagcatcggcggttaagagcatgggctgtggtgtagattgcatgggtttgaatcagcagttaagagcatgggctgtggtct
agatcgcgcgggtttgaatcagcagttaagagtatgggctgtggtctagattgcacgggtttgaatcagcagttaagagcatgggctctggtctagattg
cacgggtttg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 595 274 NA intergenic
0 chr10 29142548 29142549 1001652 0 - 1104685338176 NA NA SINE Alu AluYa5 tgcccagtgcaacaatgttgagagatgagacctttaagaggtgattaggtcaggagggcactatctacataaatgaattaatgaagttattgcaggagtg
ggttagttatctcaagagtggattcctgataaaagaatacatttggatcaccttccctgtcttactctagccctctctcttgtcctatcaactcctgcca
tgggatgatgcagcaccaaggctctcaccaaatgctggcaccatgctcttggacttcccagcctccagaactatgagccaaacaaatttctgcttattat
aaattacccagtctgtggtgttgttataacaacataaaatggactaaaacaatccctttgtaatttttcatgaggttgcattgaatCTAAATCATCTATT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AACTAAATCATCTATTaaaaaaattgacactttcacaatttttattcttaccatccaaaaacatgatatgtgtgctcattccacttttcttttgtcttcc
aataaaattttatgtgtttctttacattaggtttatgtctagaatttttctccccacaggtttgaaatgaactttaattagcttttgtctccagaattcc
ccatcgatgcctgggctttagggttctcctcaccccctccaatttgaaggtccagactggaaagaagagacacaagaggggacagaagattacctagcac
aaagttgcaggggggttgtctccctggcaagagatcccagggcccaatgcctctccagcccagccacaagtactcagagtgtcagaacatatttttgtaa
tg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 29186326 29186327 1001653 0 - 1104685338139 GCTGGAAAACTGAGTTCCGTAG ACCAAAGGACCCTCAGGTTAAT SINE Alu AluYa5 gctacttgggaggctgaggcacgagaattgagaatcacttgaacctaacaggtggaggttgcagtcagccgagatcgtgccactgtactccagcctaggt
gacagagcaagactccatctcaaagagaaaaaaaagacacatggttgatgtctagtgggggtatgtgataattcttttccatatcctcttcccccttctt
gtccaagcttcaagtcagcagttttgatgagaagatttagtgggagtctgacagagttcttcttcaaagaagtgtgatgtgaggccaccaagtgagatca
aggagggaaggtgggtgagcatgcccactgagcacacaggagcaacctagtccagcctaggggaggctggaaaactgagttccgTTCCTCCTCCTTCTCT
AGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG
TAGTGGCGGGCGCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCA
CTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATTCCTCCTCCTTCTCTtggggaaatactggaaga
tgctaagcagggaagtgacaggatctgactagaggcagagaagaagcggggtgggcatggacagtaggttgctgggggaaagagactggaacaaaagaga
ccaagtgggaggctgagagtttaatggacatgggaggtgaggcaggcctggaataaaggtgtggtgatggagagaagtgggcagatttcagaaatactta
gaagaaggggccaaaaagatgcacttgaatcaaaaacacatttatttataattttcttaaacaaacatgacttcattttgaactgctgggtagctatgtt
atcaaatatattaacctgagggtcctttggtaagtctgatggtactcccaggcactggtttgtaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 666 385 NA intergenic
0 chr10 30058780 30058781 1001654 0 - 1104685337813 NA NA SINE Alu AluY gcctcccaagtagctgggactacaggtgtgcaccaccacgcccagctaatttaaaaaaaattatagagaaatgttgcccaggctggtctcgagctccctg
ggctcaagtgatccttctgcctcagcctctctaaatgctgggattataggtgagagaaacagtgcccagccatcatgttacgtttctaagtcttgtctct
caagagcaattgccacctttttAAAAACACAAAAAGTAGCTGGGTGTGGTGGCACGCACCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCGGGAGAACCG
CTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCGTTGCACTCCAGCCTGGGTGGCAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAA
TTTTAAAAACACAAAAAGTAGCTGGGTGTGGTGGCACGCACCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCGGGAGAACCGCTTGAACCCAGGAGGCAG
AGGTTGCAGTGAGCCGAGATTGCACCGTTGCACTCCAGCCTGGGTGGCAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAagagatggggtttcactc
tgttggccaggctggtcttgaactcctgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgcacccggccaat
tgccaacttttaaacacatacatccctctgtcttgccacacacaccacatacatacacacacacacacacacacacacacacacacacacacacacacct
ccat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SVIL:NM:003174:1/36
0 chr10 39122816 39122817 1001655 0 - 1104685024089 NA NA SINE Alu AluYb8 caacaaaattgaatcgaaccaactggaaacgagtggaattgaatggaatggaatggaattaaatggactagaatggaatggactgggatggaatggaatg
gaaaaaaatggaatggaacggattggaatcatgcggaacgtaatggaatggaatgaaatggactcgaatggaatggagtcgaatggaatggaattgaata
caatggaatcgaacgtaattgaattcaatggaatcaaaaggaatagaatggaatggagtgtaatggacagatatcgaatggaatggaatggaaaggactc
gaatggaatggactggaatttaacagacatgactggaaagtactggagtggaatggactcgaatgcaaagaaaatgaatggaatCCATTCCATTCTTTTC
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGTAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTAAAAAAAAAAA
AAAAAAACCATTCCATTCTTTTCaaaggaatagtatggaatggaagtgtatggaatggaatggtctcgaatggaatggactcaaatggaatagaatagaa
tgcaatggtatcgcatggaatggaaaggaagcaagcgcagtggaaagatatcgaatgtaatggaatggacttcaatggaatggactggattggaattttc
tcgaatggaaaggactggagtggaatggactcgaatggaatgaaaacgaatggaatggaatggaaaggaaaggaaaagaatggaatggaatcagatggaa
aggaatggaatagaatggagtcaaatggaatagaatccaatggaatggcttcgaatggaaaggaatggaatggaatggaatggaatgaaatggaatgaag
tcgaatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 14577795 14577796 1001656 0 + 1104685342284 NA NA SINE Alu AluYa5 gacttcattatgatcatccctttgagatgttgctggatttggtttggcaatatattgcctagaattcttgcattcatgatcctaagtgtggtcagccagt
aattttcctgtcttctactatccttggtaggttttggcatcaagattttggaagcctcaaattgaggtgaggagtgtttcctctcctgctgtactcaaga
atagtttgtgaaaaattggaattattttttctggactttctggtagaacctgcctttgaaactacctttgcctagacttttaagattgtttttgacttct
gttcgatctctttgaagcatatattatgtttttaaattttgggtttgtaatgttatatttactccctgactacaaattatctcatatGAAAATTTTTTTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAG
AAAATTTTTTTTttagcagctaaaagaacaccacaggagagccttaagcttcaagcttttgaatgtagaatttttgttcaggagaatcacaggagcgatg
agctagctctgtccagaattgaaagcaggtgatgaccaaaaaaagaaagaagccagagaacaaggaagatagtttccaatgttattgattgtataaatct
cagttcatcatcccaaagaaaaaaagatttcatgctccacctacctaactcatctaccaaaaagagagaatcgcccatcactaggctcttctttttaact
tacttctgggcaacgcaaccccttttttcttctctgcatttatttgattttaaattgcatgagcaatttacattaatatttctctgtagcattcacagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 20245264 20245265 1001657 0 - 1104685340647 AAAAAGTCCCCTTCCAGGTT GGAAATTATGTGGAGGGAGTTG SINE Alu AluY gagttcactgcagctctaccactgtgtagctcagtgagatttgtctctggacttgagttgcttggtatgttaaatggtgataataataataataaataat
catttcctaaagtgtgacaattgttttatatagtacatagcttagcatagtgcctataaataattgttggctaccattaccattgtaatttttatttgag
tatttttgagactttgattgcttatgtatccatatgtattttgaaaaaagaaaaaaagtccccttccaggttggggcacgatggctcacacctgtaattc
cagcacttttggaggctaaggtgggcggatcacctgaggtcaggagttcaagaccagtttggccaacgtggcgaaaccccatctctacTGTATTTTTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGTGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAATGTATTTTTTTTaaaatgagccaggcgtggtgaggtgcccctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaatctggaggc
agaagttgcagtgagccatgatcctgtcatgagccatgatcctgtcactgtactccagcctaggtgacagagtgagactccattaaaaaaaaaaaaaaaa
acaaaacacaactccctccacataatttccccgtaaatattttatctacgttgatgcggctcacattcttacccacagagcatttccaagtcagatgtac
tttgtactttctaggatgcaagagaggtacacatgaaagcaccacccggctgttaggcttgagctgagatagagggaagggaaaaataagctctctattc
ctaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 678 362 NA intron:PLXDC2:NM:032812:1/14
0 chr10 70978754 70978755 1001658 0 + 1104685137674 NA NA SINE Alu AluY aagagagcctggtggtcttgctgagttgaggatacaaagaagagaattcaggaggttgaggcagctagggtttgcacgtagtggaaagatttttacagag
aaagtttcagaaacatgcatagagctcccttgagttcccatgaagctaactaaaaaaaaaatccagggaaaggacaattacttgggagaagtaagataaa
aagattcttagagttcacacaggttggggaatcatttgaggttctactaaccaggatggagacgcattgctataatatgtgaggcatttatatatttgat
gaaagattctagaagggtcatatttcaatggtggggctaacctagctctagagtgaaggttactgtagtcccattttttaagagctAAAAACAAGCTTTA
AGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAGCTTTAaaaagattatagttgtcttttaatggcctccaggacaaaatgcaacccctctttaatggaatacaataaaatcaa
gcactcaatgatgtaaatttgcattacccagcatctaatcaagaatgactagaaatacacagaattagaaatatgttacccataattagatgtggatgct
aaagcaactccatcttggatgctaatctgccatgttgacttctgattaaccctgttctgggaaggcctgtaagatttctactttatctactgttatcata
catgttgcccagaggtcaaaacaaccttgataataaattcttctctcaggcagactaacacagcattcttgcctttccctgaggagttgaattcaactgt
cttatacactc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 73332013 73332014 1001659 0 - 1104685145815 NA NA SINE Alu AluYa5 ctgcctcagtctctctctctttaaacaggaaccacatggattgcaaaggcaaagttatgaaatatatacaatatgaccctatagtgtaaaactatGTGGC
TCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATAACCTGAGGTCGAGAGTTCAAGACCAGCCTGGCCAATATGGCAAAACGCCATCTC
TACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCACATCTGTAGTCCCAGCTACTCAGGAGGCCACGGCAGGAGCATCACTTGAACCCAGGAGGTAG
AGGCTGCAGTGAGCCGAGATCACATCACTGAGCTCCAGCCTGGGTGACAGAACGAGACTCTGTCTCAAAAAATAATAATAATAATTAAAAATAAAAATTG
CCGCGCCCGGCCGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATAACCTGAGGTCGAGAGTTCAAGACCAGCCTGGCCAATA
TGGCAAAACGCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCACATCTGTAGTCCCAGCTACTCAGGAGGCCACGGCAGGAGCATCAC
TTGAACCCAGGAGGTAGAGGCTGCAGTGAGCCGAGATCACATCACTGAGCTCCAGCCTGGGTGACAGAACGAGACTCTGTCTCAAAAAATAATAATAATA
ATTAAAAATAAAAATTGgcacctagcacttgaaccagggaggcagaggctgcagtgatccgagatggcaccattgcactccaacctgggcaacagagcaa
gaatccatctca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 66507075 66507076 1001660 0 - 1104685136157 NA NA SINE Alu AluYa5 acttatacaaaaacatatgtatcaacactgtttataacagccctacattggaaaaagttcaaataattttcaaaactagattggacaaaaaactatgata
tatcctcccggtagagtactgcacagcaataagaaagaactgctgacacattcagcaacatgaatggatttcacagttatcatgctatgtaaaagaaggc
agatacatagaagtatattccatatcattatattaattttaaaattccaaaggcagcacatttgataaaaaaattgtaaaagttatgagaatagttctac
ttggaggagcccaagagtttttggagtgttaggtatattctataacttgatatagatgatggattacatggctgtatatatgtgtAAAAAAACTCATTGA
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAACTCATTGAatttaatgaaagtgattgtatattaactacatgtaaatcaaatgagttttttctcatgattattactcatagttttaattcccaca
aacaaaaacatttgttgaggaagtttccttaaatttcctagagttgtgttttctgtttcaacattaaaattttttgtctttcttaggtgataatgctgca
gataaatcttcttcagtgactctgcaatgcaatctgtcatgattatcatttaagtaaagaccaagaagtaaaaatccatcttcaagcaccaagtcaacaa
aattaaagatcttagtacatatgcttaagcaaaggtagattttggaaagaattcacagttgaaaatctctgagactgctatcaagcaacatacgcaaag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 56572384 56572385 1001661 0 - 1104685133375 TGGACAGCAACATAGATGGGTA GGACCAACTGAGAAAAATGCTT SINE Alu AluYa5 acccataagccaatcatctcccaccaggcctctcctctgtcatgtggggattacaattggaaatgagacttgggtagggacgcagagccaaatcgtatca
ctcactttgcatttattccttctcatttatttcttcactccatctctcaaatttcttatcctgctcccctagtcacaaaagactttgcatgacagctacc
caaaagaaggcaagatacttctcagagggttgaaaaataagagacttgagtctgctgaacctgagttttattcagtggaccaactgagaaaaatgcttgg
aaatattctcaggttaatattaaattatccatctttttagagatatatctacataggagtacaaatatatttatgAAAATATATAAAAATAACTGTAGTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATATAT
AAAAATAACTGTAGTAatgcaaaaaactatagatacacacaatctatgtacctataaaattgtatcattacaattacattgctgtttaaaatatctgtga
atgagaatacctgaaaatatatttaacttatatgtgcatatatacccatctatgttgctgtccatctatttatccatttatagctatatctgaatctaca
tccatattaacaattttggtaggaaaacttatactctatatttgataaagttaacagtataattatatttttgtttacttttcagccaatctaaactatt
aatgttatcattttctagtgatggtcctgggtcattgccagactcaatagttttgttctttttttctataataagatgataaaaccattag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 588 273 NA intergenic
0 chr10 61794863 61794864 1001662 0 + 1104685134792 GCCATTTTCCCTCATCTTGTAT ATCTTCAAAGCATGGGGATCTA SINE Alu AluYb8 tggacgtaatttgttagaaaaataagacaatatagccatagagctactagtaaactgtttcctaatgtaatgagaaaataaggtaacaatttttaatgtg
gacaatttacaaaactgtaagtaaatggggaagaactgtatgttttaaacaaataacaaaaaaaaaaggaaacataaattcagagacattttctatattt
ccaaagggtaaagacaacatccaccttttgtggatttttttttgagaacaaatacccccaaattaccacacacttaaatgtgaaatacttgtgtaataca
tttcaaggaatgaaaaacacagactttaaattccaagtcaaggctttggctattatttgccattttccctcatcttgtatggtgccAAAAAATAGATGCT
TCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAA
AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAG
CCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAATAGATGCTaaaatatttatt
gaaaaaaggaaagaatagaaaatgagatgagggaaatgaaaaacttcttatattagcaagatattctttataaagatcttttagccttttctgttacaga
gatatcattcaatgtaaaagatacataagttgctaaatgatattcaagaaatcaaaaactataaaaaatactttcttatgaagttatagatccccatgct
ttgaagattactcccaaattccactttaaattctattaatccaaatctgataacacctatcaccattttccttgagcagttttcatgtttgttgtaaaat
aaatctctaaaacaataaagggcaatcaatctgctcttaaaagggaaaattgaattatatgatattgcatgaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 550 263 NA intron:ANK3:NM:020987:1/44
0 chr10 58572220 58572221 1001663 0 + 1104685133884 GGAAAAGGAAGCATAATCACCA CATTTCAGTATCCCTTTCTTCCA SINE Alu AluYd8 gttacaaaggcttaaggactaattatatagagcaatgaaaagaatttcaacttctgaaactaatctggaaaatctataaacattttcttctctccgtcta
aactacgtctaatatattgagatgtaatattaaaaatgtgttattaataattgtttcatctgcagtatgaagattattcagccagggctgcaaacagcag
acacatgctgaaaagtgcctttggagaatagaatttgtcattgaatatggatgtcaggaaagaatctgggcaaaagcaattggattggaaaaggaagcat
aatcaccaaaataagtaaagtatattttactggaaagcccaatctacttgagattccgctataaatatctcatttataactcataGAAAAAGAAATTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGAATGAACCCAGAAGG
CGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCCTCTCAAAAAACAAAACAAAACAAAACAAAACAAAA
AAAAAAAAAAAAAAAAAAAAGAAAAAGAAATTATGtagtggaagaaagggatactgaaatgtttatggcaaaattttcagtatatctttatcaagacatt
cattttgactgacagctaattttatgtataaaattatttataatatcagcttaaagtaactggaagtgtagcactctttctaaaactgtttatctggata
ttataggtttttttcaacaatataattttaatctggtacaaagactcctcaaaaaattatccctctgatatttatgtaagtcaattagtcctttgataat
gttatttatatttacacacacacacacacacacaggcacacacacacatacacatgcatacgtatttatttagcaagagtttatgctcagcacttaatga
aggtttgaatattgagacag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 475 141 NA intergenic
0 chr10 64130015 64130016 1001664 0 - 1104685135401 NA NA SINE Alu AluYb8 tttatgatacatatggggacatatattttttataatagaaacaagtgttaattaatctatacccttctctagaccaagacaagaacctttacttctcttt
gcttttcctacactttcaatgttcatataatccagaatgctacttctaaattactatgaccttttaaataaataaattgctagttctttaaaataaatac
ttatttaaaattaatttactgtattatttgtttataagtgtttcttacatcccactcctttcttttgtgttcattgtcctttggatgaaatatattttgt
agtatttctttagaaaatcatctgtgggtgctaaactttctgaggcttgaatatatgaggatattttcatttattttctttcttAAAAAGCCATTTGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGCCATTTGGTGggaaatataggcacactgctccattgtatctagcactgctactgagaaatcagatgttagtctgaatttgttc
ttctatcagtaatatgtcttttcataggtaacttttagtattttctctgtgttcttgaggttctgaaacttcactctgtctgtaggttgagtttaaaaga
atatccttttggatacttggacacttaggggttgtggtggtggcactcactcaatctgagagttcttgtctttctttggttctggaaggttcttggcaat
aatttcctcaaatattgctttgctttcattctctctattgtcttcttagaacagtaaactaccaattaacaccctttaattctatgtgttcttgttacca
tttattttact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 54475976 54475977 1001665 0 - 1104685132629 GAAAGCAAGAAGGGAAATACGG ACATTTCCTCTCTTCCCTCACA SINE Alu AluY acattggtaaggctgataacatgaattttttataaacaaatacataatacgtgtttttactaaagattgattgcaaagtttaaaagcaataaaaatactt
tacattaacatatctgtacaaatatcaaggggtttattaatattgcataatattttctaagggtctaaggtcaggaaacctgtgctattatatttgaagg
gaagtgttcctaagtgcaaagtcaagcggattttattttctccagttgttcagtggatcatgccatgttttattttacttcttaatgacttgggtaatga
cttaactgtacatttcctctcttccctcacaagtcgccaatggccttttattttcttcttgctgacaagaacaaatgattgtattAAATTCTTGAAAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AATTCTTGAAAGTGcacatcccttaatatatctattgcccccaaatccccttttttgatgtttagattaacgatgaaataactattctcttgctagttat
atattgtactctcactataatctgagaatttccacttatttctctgctgaatcaagataactatttcctagaatccgtatttcccttcttgctttctacc
ttgtattgctggaattcatcctcagttcctgccttagaaaatacgtgagttacattttctgaaaccttaaagttgctttgttaagtctttatatttgatt
aatatgtttatgaatatataattttaggtttaaaattattttcccatattactttgaagggattactaccactaaattctggtatcctacactgtgaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 587 274 NA intergenic
0 chr10 69664912 69664913 1001666 0 + 1104685137059 CACTTCCCAGTCAGACAAGTCA TTGTTCCAGTCACTCATTCCAG SINE Alu AluYb8 accacaccggctaattttgcatttttagtagacacggggtttcaccatgttggccaggctggtctcgaactcttgtcctcaggtgatccacccgcctcag
cctcccaaagtgctggaattacaggcgtgagccaccgcgctcagccttcatttattttacagaggagaaggagactgagatctagagactgaacattgta
ctaaaaggcactgagcaatttaatgattagattaaggcaagaagtcaaatctcctgcatcccttcattttagaggctttaaaattagaagatcagttaat
acaagcccctcattttgcaatgggccaactgatatctaccagtcacttcccagtcagacaagtcactaataaaattttcaggaaAGAATTAGCAATTTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATTAGCAATTTTGtgcataaaggacagcatcagttattttataaccctagtgtctagcacactagacactagaaaataataagt
agtcagtaaataacctggaatgagtgactggaacaataaactaggtaaatgatagatgcgggccagaatgaacacattcctagtgaataacccagacaat
gattcatgttccctcacctgtagggaacgggagctagctgcacattttgaatgcagaatgacttcttaaaaaacaggctgggtgcagtggctcacaccat
catttcagcacaggaatttcagaccagcctatgcagcatagtaagaccctgtctctacagaaataaaattaattagctgggagtaatggagaatgcctgt
agtaccagttact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 493 165 NA intergenic
0 chr10 100296902 100296903 1001667 0 + 1104685167744 NA NA SINE Alu AluYa5/8 atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactcaagagcttctgcacagcaaaagaaactaccatca
gagtgaacagccaacctacagaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaattta
caagaaaaaaacaaacaaccctatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaa
tgctcatcatcactggccatcagagaaatgcaaatcaaaaccccaatgagataccatctcacaccagttagaatggcaatcattTGTTTCCTGACTTTTT
TACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCG
AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTTTCCTGACTTTTTcaggtgctggagaggatgtggagaaataggaacactttt
acactgttggtgggactgtcaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatc
ccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttatggcgccattattcacaatagcaaagactt
ggaaccaacccaaatgtccaacaatgatagattggactaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcat
gtcctttgtagggacatggatgaaattggaaatcatcattctcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:HPSE2:NM:021828:9/12
0 chr10 115240277 115240278 1001668 0 + 1104685662367 AGGTAGCAGGCATCTCATGATT AGGACATGACTGTGGGCTTTAT SINE Alu AluYb8 acttcatggaaaatatttcaggatgaactttgccaattataactaagccaataaatacaattacattaaatgtagtcatattcctgctcctttgagccta
gctaattttacattataaaagcatttgatgagaacactttgtatttaggtaacatctttcatccccaagtctccaggatctacttgagagatgattggca
agtaaattccccaatgcagaggtccctcctctggtggaatggtgagtctctaacagaagaaggaaatttgctgacactggagtcactggctaactattga
agatggtatcaaagctaatcagcagacagaagagccagtctggaggacatgactgtgggctttatatttctgtgaattaatttTTCCTTTTATTTTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATTCCTTTTATTTTTCTTagttatttcttgttctctttgtggtgctctaagaatttcacatttaatcatgagatgcctgctacc
tccaggccccactcatgcctaagaagtgccccaaattactttgcattagatgctggttccaagttcagcagggaaccagaaatgttagatgcacataaaa
gttgggcatagggaggaggtgagaagggccagctttgagttcccttctacttggcaggtgtcttctttttctcttattttcaaacaaagtttattatttc
ctcctctatgagaagaatatattcttattatagaaaatttggcaaaaatagaaatgcaagaagcaaagaaactcccatgatccaaagagaatcactatta
acaatttgatgtatttc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 458 125 NA intergenic
0 chr10 124725995 124725996 1001669 0 + 1104685659352 NA NA SINE Alu AluY gatacaaggtcaagacataaaaatcaaccactttcttaattccagcaatgaacaagtgaaatttcaaattagaaacacaataccattacatgaacacccc
ccaaaatgaaatacttaaatttaaaacttctttttattgggtataaaatttttaaaatatgcatgaaatctatatgatgaaaactacaaaactctgttga
aagaaataaactaaaatatttcatgttcatgaatagaaataatattgtcaagatgtcatttcttcccaacttgatctatagattcaacacagtctcaacc
ccagcaagctgttttgtggatatcaacaaagtgattctaaagtttatgtggcaaggcaaaggatctaggctagccagcacaatattTTTGCTCCTTCTTT
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTACACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAATTTGCTCCTTCTTTctagaagactgacagtagccaactgcaagacttactataaagctataataataaagatagtgtcatattggcaaaagaat
agacaaatagatcaatgaacagaatagagagcccacataaatacagtcaactgatctttgacaaaggagcaaaggcaatgctatggacaaaaaaatagtc
ttttcaacaactggtgctgaaactagatatctacacacagactttacctccttcacaagaattaactcaaaatggatcatagaacaaaatgtaaatccca
aaactataagactacaggataacagagaatctagaagactgggcttggtgatgatatttttgataaaacaccaaaggtatgatgcatgaaagaagtcatt
ggtaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 105807205 105807206 1001670 0 + 1104685664564 AGTCAGATGCAGACCAATGCTA CTTTTCCCTCCAGATTCTCTGA SINE Alu AluYb8 gcaggagccgcaggggcaccaggctggcgctggtccccaagggccgccgccagcgccaccaacaccgccacctcctccactgccaccaccaccactgctg
ctgtagctgtggatatctgtgaaagagacagggaaaatgaagcaaatgcaggcagctcctgccttttccctccagattctctgacttttggtgactttct
ggcctgagtgactacgactgggggcttttaagttcctgtgctgttccacccaggacagggctggctcctggactgagcacagggcctgactggtgctgac
cagaagtctggcaatcctggctccagctgtgtgaacctgagaaggtcacttcacctttgtttccgtttttataacatggggttGAAGGAGGCAATCTTTT
GGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAACCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGAGGCAATCTTTTtggg
aaggttgttgaatgaaataggacaaggaatgtaaaatagtagaggagttagcagcacagcacgaggcttaaacatctttattttgaatatagcattggtc
tgcatctgactgggcccaaacctagagcgttcccatctccatgcctcagttcacacagtgctttctttaatccttacagtgcctagaattatactcagct
cttcaggggtgcctagtgaattaaaacaatgttttttgtaatgaaaagtgtttttagttccctaaaatggggtggtaggacttgacctgcttctatcaca
cggcggtggaaggaaatgaggaaaggctaaggggctggaggcgtgcatggcttagtctcttcttgagctgctgtgtaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 549 354 NA intron:COL17A1:NM:000494:16/56
0 chr10 108981275 108981276 1001671 0 - 1104685663805 GTGGTGGCCTATTCAAAAAGAG CTGGAGAATCCAGTGTAGGACA SINE Alu AluYa5 cattagaccatgagctctcaggatagagagtgacatattcatcattatcctacacatattttagagggtgaataaatgtatgttgaaatgcgttgaaaga
agagatgctgtctatacaccctgtgtgactgccgattgtccttctctctagctcattctgtccctcctctccttctccctctctgtctctacctctatat
gtatgtataccacacacatgcacacacacaattttaacctgttgtttcttctgagaaaaataaattaatcctgactgttccatctgcaccagctctctag
tggtggcctattcaaaaagaggattaaaaggacacctccaaaggagggactttcatcagttatttttaactaaactgaggttctGCATATTACACATTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGAAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAGCATATTACACATTTTacttatcacagtgttaatcaaaggggtgtgaaaaaatgaaaatagagattgcgtgtatgtgtcctacactggattct
ccagaaacagaccctgagaggaggatttgtgtgcatgtgatttattaagagcatgctcccaggagaaatcaggaagaaagcaagggataacagcatgtca
gggaagaggagaaagccaggaaaagatgtgatgattggcaaaacaaacaaacaaaaaaaacaaaaaaaaaaaatcagactgatctcattgggcactccgg
aatagaaatctacaactcaaggtttgccccactttcaggcaaaggagttgagatttcattgacctttcagtcagtggctaagagatgccagtcagataaa
agtttcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 505 183 NA intergenic
0 chr11 10594070 10594071 1001672 0 + 1104685630353 NA NA SINE Alu AluYb8 gatagactggattaagaaaatgtggcacatatacaccatggaatactatgcacccataaaaaaggatgagttcatgtcctttgtagggacatggatgaag
ctggaaaccatcattctcagcaaactatcgcagggacaaaaaaccaaacaccgcatgttctcactcataggcgggaattgaacaatgagaacacttggac
acaggaaggggaacatcacacaccggggcctgtggtggggtccgggggatgggggagggatagcattagtagatatacctaatgtaaatgacgagttaat
gggtgcagcacaccaacatggcacatgtatacatatgtaacaaacttgcacgttgtgcacatgtaccttagaacttaaagtataataatTACTTTTTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTCCAGTCCGCAGTCCGGCCTGGGGGACAGAGCGAGATTCCGTTTCAAAAAAAAAAA
AAAAAAAATACTTTTTTTTattactaagtgaaaaaagcaaggtttggaacaccttgtataatatactatcatttatgtttaaaaaatccacttttggctg
ggcgcggtggctctcgcctgtaatctcagccctttgggaggccgaggcgggcggatcacgaggtcaggacatcgagaccatcctggctaacgtggtgaaa
ccctagctctactaaaaatacaaaaaattagcccggcgtggtggcgagcgcctgtagtcccggccgaggaaggagagcggcgtgaatccgggaggtggag
cttgcagtgagctgagatggcaccactgcactccagcctgggtgacagtgagactccatctcaaaaaaaaaaaaaaaagaaaaatccacttttacatata
tgtctata Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MRVI1:NM:130385:9/20
0 chr11 23479381 23479428 1001673 0 + 1104685626775 ATCTGATTGCTTTTTCGCTGA CTTTTGAGCTGCATTCCAGAC SINE Alu AluYb8 tcaaatatgccatttgaagttttttcagatcacatttgaaattctacttcactctatttctgttgctttcatgaaatttgaaagtaatggaaggtgtcat
catttcattttccctccactagtagcaactaggtgtgagtttgttccatgacagactttagtttcattcacttgaaataggtcccaaagtttcattccca
tggtttgtgttgccttgaagtttagctgctgtgcttttgagctgcattccagactacaaatattgagatttctattctttccatgtattgccttgtggga
tttatcacagggatacttcagcacttcaactcccaaataaggaagtatttattgtcacttttttgtccatttgatattctatttttaattgtaatNNNNN
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACCNNNNNctagggtttatgttagacctcagctattcagcgaaaaagcaatcagatgaaaataggttatacatct
ttgaaagaaattgattacacagactttttttgttccaataacataacttgacttgattagcacgctgatacttttgaagtatggagaggaagtaaagctg
ttataatggatggaaaagaaacacactgaggctaagcgacatccctaaagccaccatgaaatatgatccagaagctgaaattctgacacagacaaggaat
tccaatttactgcacattgtaattccataatttctcagtatcaatttttaagttaaatataagaaccaggtttataataggaaatgtattagttaatggg
gagaaaataaggattaataagatgtagc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 548 220 NA intergenic
0 chr11 25097395 25097396 1001674 0 - 1104685626238 TCCAAACACTGAGAACTCCAAA CAGGCATTCTGATATCACTGGA SINE Alu AluYa5 aagcactgtgcaccatcttgtagatgaaatttctgttaactcagcagattgtactttcattccccatgttttgaacaacggttcaggatatcgactgaga
agtagcctttgtcctggattttacttccaatctctctcatccaaatgtaaactcacaggcccagttttctagagttctgtgcagttatagatggaatcaa
tatgataaaagtaaatggtataaaggaaatggctcaagcatttctttcatggaaatcatggctaggtcagtaagatattggatatagtccaaacactgag
aactccaaactcatgctataaagtgaatcaatgcaggtataggtgtgattacaatttgggattagagattttgagatcagtgttACCATAGCCATACTTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACCATAGCCATACTTTatcagagaaggtcaaagtcgagaaactaaaggaaggggaagaatttagaaatcatatgaatcaccaaatgcat
aaattgtcattcagataaatatggaaagctcaaattaggtggaagattttaaaaatttatgcttccagtgatatcagaatgcctgagattattacctacc
tctttgtatctaatattttctcatgaaaagttaactaatttcatcaaaccatcaaaacatgaagtctgatgctattcgtattatcaacactgtacaaaca
aagttattaaggcttagagagttcatctaacttataaagaccacaaacctaataagccttggaacctagattcaaatgcaaaaataccagcttcattgca
cttaaccactc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 598 271 NA intergenic
0 chr11 5841725 5841726 1001675 0 + 1104685273005 NA NA SINE Alu AluY aaaaaaagcctacctgatcatggtatatgaacctttcaaagtgcctctgaatttggtttgctaatcttttgttgaggatttttgcatttatgtccataag
aaatatagccctgaagttttttgttgttgttgttgtctctgccaggttttgggatcaggctgatgctggcttcatagaatgagttagagaggagaccctt
ctccttgatttttttggatagcttcagtagaattggtatcagttattctagggatgtctagtagaatttggctgtaaatccatctggtccaggacttttt
tttttattggtagtttctttactactgattcaatttcagaagatgctatttgtctattcaggattttaatctcttactgattcatttAAGAGATTGTGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAGAGATTGTGTGcttcccaaaatttaaacatttcctccagattttctcatttgtgtgaacagaattgttcatagtagtgtctgaagatct
tttgtatttctgtgagatcagttgtaacaccacctttgtcatttctgattgcgcctatttagatcctctctttttgtttgttaatctagctggggtctat
caatcttatttttttgaagaaccaagtattgatttcattaacattgtgtatatatttttgcatctaaatttcattaaggtcttttcttactttattttct
tctgctagctttggggttggtgtattcttttttttctagttcctttaggtgcaaagttagtttgttaatttgagatctttctaccttcttgatgaagtta
tatggggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 126863817 126863818 1001676 0 + 1104685335585 GATAAAATAGATTTGCCCCCAAT GCAGCCAAATAAAAAGATCTGG SINE Alu AluYa5 gagtgtcccatttttccacgtacagtctgtcatggcttcccttggttaggaaagggaaatcccccaaccccttgtgcttcccaggtgagctgatgccccg
ccctgcttcagctcaccctcagtgggctgcacccactgtccaaccagtcccagtgagatgaaccaggtacctcagttggaaatgcacaaatcacctgtct
tctgcgttgatcacgctgggagctgcagaccggagttgtttctattctgccatcttggaacggaaaaagcatgcacattttttagtgttttgttttggga
ttctttttgatcaaattttatttcatgttgctaaggctatatttttctcttctttttttccagataaaatagatttgcccccaattaAAAAGAAATACTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GAAATACTTactcaatgtaaataatttaggtaagaaaaagaaaattaccgggcacattcactacatataactactgctaacatttttccttccagacttt
ttcctatatgcttacacacacacacacacacacacacacacacacacactcacttctaacttacttcccttaacgtatcatgagtgtcttcctaataatt
taatagaggaccagatctttttatttggctgcacagcatgccatggtatggagatatacttcatgaaaaaccaagtttagacatttttaaggttcttcac
tcattttcccaaaacactttctaacagcttagatcaataatcctcactcccacaatcaatgtgtgatgattcttctcaagaccaatgacaaccatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 570 274 NA intergenic
0 chr10 134138535 134138536 1001677 0 - 1104685041655 NA NA SINE Alu AluYb8 aattataaatgaaataatgtgcaacattattacatttgtacatctcaaagaaaggggcaattttccaggaaaatgtggttttccaaaaattgtctcaaaa
ggaaacctgaacactttaagagatgaataaccactgaatgaactgaaagggttttgccaaagaattatttccatacgtgatgccagaccagtacaacttt
ataggtgggttagttcaaacttttaaggaacagagctccaatgccatatacattgaaaattcatagaaatatttggaaagctccccacttaattttatga
acctagtataactttgatattaaaacttggcaaagatagtatcacaagacgaattataatataatctcaattacgaatgtagatatAAGAATTCCAAATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCACAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAATTCCAAATAattcttaaatgtaaattcagtcaccattttaaataaagaatatatcaaattcacagaatttattccttga
aggcaaggatgaattaatattataaaatctaataacttaattatatcaataggttaaatgagaaatataatcatttgattgtcaatagataacaaaaagg
catttgataatgtttgatatccattaaccttaattttaatcaaaaccataattaatgttaaaatttgaactgtgcggcaaggcttataaccaaatgctgt
agccccttacctaatctgtctgacttctagaaagttcttcctcttcagaggccaccactttcagctctttgcagaaattttttcaggtatttacctacat
atttctaaataacaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 3224386 3224387 1001678 0 - 1104685306922 NA NA SINE Alu AluYa5/8 tgttaagtatgaaaatgctgaaaaaatatacactgtgtaaaacaaaataaaaacttaagacctcctgttctcagccaaagccattcattctaaagaaaac
ctgaaacataagttgaggccatgatgacagtggatggtcagacatgcctcatgccttcctccctttggaattcaggcacagctgtccaaattccattgtt
tggaccagcattcacattaaaacagagaccttaaggcccacaaaacagattctgtagccataagataccaacatgagatagcagaccctgatagaaatca
aagtattttaccccttatcttaacccaggcatccctgtctattgattccaggtctttagataataactcttttaaccaattgccaatTCAAAGATTTTCT
AGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAGATTTTCTatccacctatgacctggaagcctcttcttcaagttgtcctgcctttccagattg
aaccaatgtacatcttacatgtactgattgatgtcttctgtctccctaaaatgtataaaatcaagctgtagcccagccaccctaagcacatgttcttggg
atctcctgaggctgtgtcgtgggccattggtcacttatatttgactcagaataaatctgttaaaatattttacagagtttgactcttctcattgacagta
attggcaccctacccgtggggtctcagagacgactcagaatcccagaggagttgtctgaacccagagctaaggtaccagcaggggcccattgaaatctct
cccaatctcgaacttctcctccagtggaactgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 41486825 41486826 1001679 0 + 1104685621693 CATGCCAAGTGGTGAAAAAGTA TAATCTGTTTCCCCTCTCCAAA SINE Alu AluYb8 atgtccaagctcaaggttgttggggtgaggatgagaatcccaattctatggaagaggaaaagggaaatatttgctgaatcataatatggtctaccacaag
tgagatgttgctctattgaaaacctgattattaaacaatcaaatcagtgtttggaaaaagtttgattctttgcttgaaattcctggcttgccacatgcta
aaaacatcaaactggatttctggcctattctaaggatagtaaagagacagggaccaggagagagaaaaaaatagctttcaaaggggaagtgcaacccaag
aaagataatctgtttcccctctccaaagctaagaaatggaggagacctttaggagacaaataagtaaagtgagataaatcttacggATTAGTCTTTCTTT
CACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGA
TTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGTCTTTCTTTtttt
attgaccaatataatgtccatgtttgtgaacatacccagacatgtctgcaacagggagaagagcacgagaaaggcatagtaaagatgagagttttaaaga
aggagcctactttttcaccacttggcatgacaagttacctagatctccagctagctagagtttgcactgcactactcctacccacaacgaaggggcatct
tttggattagaagactgaaacaagaggtttgaagaatcaccaattggattcaaggatgaggagaattagagaagaagaagctgatcagtcagatatttta
tgccaagggactgagtagggagagatcaccagggagttatgcaaaagagccaacaaataaaccctcatgtaggagtgagtag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 524 229 NA intergenic
0 chr11 47763232 47763233 1001680 0 - 1104685620058 NA NA SINE Alu AluY ttgttcccatttagctatattattgattcagttgttaatttctaaagttttccttgtaaggctgggcatggtgactcctgcctgtaatcccaacacttag
ggaggacaaggtcagaggatcactttagctctggagtttaataccagcgtggacaacatagcaagtccttgtctctacaaaacataaacaaaattagctg
ggcatagtggtgcatgcctgtattcccagctatttaggaagctgaaatgggagaatctggggctgaggctgcagtgagctgagatcacaccactccactc
tagcctgggtgacagagcaagaccctgtctgaaaaaaaagttttccttgtaaatacatgctttgaatggtactctaaatagctatGAGTTTCAGATTCTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACA
GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAGTTTCAGATTCTTattagtc
atttttgtttttttcaagtgctacagatgaagcatggcgactattatccacttacctggagaggtacaaagtccagaataacttgtatcaccactgtgta
atcaacaagctcttgtctcatggagtgcctctgcctaattggcttataaacagttacaaggtaaacggattataacttgtacagagtaagaacccactct
ttatcattctggataacttcatgagatgattaaaaatatggactgattgcagtggctcatacctgtcatgcccgcacattggtaggccaacaggggagga
tggcttgagcccaggagtttgagaccagcttgggcaacacagggagaccccatctctatttaaatttaaaaatatata Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NUP160:NM:015231:32/36
0 chr11 56059939 56059940 1001681 0 + 1104685161116 GCCCTAATTATGAAGGCAAAAG TTCTGAGTTTGAAAAGGGCTTG SINE Alu AluYg6 tggttagaataaagaagttaaattgtaaaatctactgggtaaaataatttggacctcaaaattgttgtagttgagttagttcacggtatttaatccaggt
gttgggaagtaatattttatggaaaacctggtgaatgtgtaacttagcaaaatgttatttatttgccaacctatgaaaacaaacagaataaagatcaaaa
tattttgcctaccttttttttcccttttaccaagtatccaatcctcacttagctaggacatataaatataagatgtaacctgtacatgtgatcaaatagt
acatgtatttgccctaattatgaaggcaaaagagatacatgaatgcttcattggaagcacatttttccaatgatataccgaaaAAAAACTTTTACTATAG
GGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTA
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGCCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAACTTTTACTATAGtctacacctaaatcagcattatctgtcactgtctccctcattccctggtatagccatactggtcttgggtcaagccctttt
caaactcagaaccttcacagagccgttttttaaccttttttttttttttttttttttaggttcaggggtatatgtgaaggtttttgatacagttaaactc
acgtcatgggggtttgttgtacagattatttcatcacccacatactaagcctagtaccaaacagttattttttctgatcctttccctactcccatcttcc
atcttcaagtaggccccagtgtctgttgttctcccctttgtgtccatgtgttttcattatttagctcccatttacgtcttcttttgaaaagtatctattc
at Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 501 183 NA intron:OR8U8:NM:001013356:2/3
0 chr11 57530697 57530698 1001682 0 + 1104685161532 CTTTAAACAGCCATCCAGGAAC GGGAACACTTTTGACTCCTTTG SINE Alu AluYa5/8 aaaggcaagggctgaagataatatagcaatgtcttttttatatttttggccttaactatgccaatctaattagaattcactgtatttaaaatggttcctt
ttacttattgaaacacattttagtgtggtttatgtgtaatatcaaatgaagattatttaactcttctcacattttatagatgatctataaagtcagatgt
ctttaacatagtagcaagttaaacttcactcttgaattcttactatctaagtcagactacattataatttaagattgtctttaaacagccatccaggaac
ataaaactgtagaactactgtgtatttgtgattgggaatagtgcttttgccaacttataaggattagagtagaggagatatacacaaattAAAAATTATG
GCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTC
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATGtgtgatcataagacttaagataattaaaaacaaaatcacagatcaaaataacaaaaaacaaaaaa
acctactgagagccagatcaagatggagtagtaagttcaagaactgcctccactctagaaacataggcctactgaataaagtaaaaagagaaaacagaag
gtggcatagtcaggcccaactacaagacaagcgcttttgaagatccaggctggcacagaaacacaaactgtgatcagggctgcaaggcttggtggacttg
ctgggttttggatgcagtggcagtcagtggtggcaaaggagtcaaaagtgttccctgagagatgggaaagcagaggcaggttctcagccacggaggccca
gggctaaggtgagattcatgtctca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 577 433 NA intergenic
0 chr11 25561716 25561717 1001683 0 + 1104685626086 TGCTCTTCAGAATTTTGTGCTC ACAAGAGAGTGAATGGCAGGAT SINE Alu AluYb8 aaaaataaaaaaaaaatacacagacacatggatgtactgtttttctcagcggaaaaaaaaaaaatgcattcctatggactgatggaagcctttagatgtt
gagaaaaaaacattgaagatctcaagataaccctcacccatgacactctaactctgcaattaaaattcaccctatagcatttttctttttttcaagtagt
tattcaccttctttgtcctcaaattcttaaaaaaataagtatgagaaagcacaatttttccacaagagagtgaatggcaggatagatgagaagcgatgta
atgaaatgcggcttcaaacaaggagtatttttaaagtaatcataataccaagagattataaagattacatttcaaaaatagatttAACTAAGTTCCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTTCAAAAAAAAAACTAAGTT
CCTTTTattatgagcacaaaattctgaagagcatacattatgaaattaaactcacctgaaattcattactttcttgagtcctcaaatgtcatcttcctaa
agacagggtttgtttcttattagatctatgtaaataacgtggtatgtaggcagagagaaactaaaactgccttttcatttctggctgctgatgagttacc
gctgtgcttgcatgacatttacaagccacgttagtgaggtcaccctcactatactagattctcttttatacattattgccctggataattgtgttggaaa
ttgccatcaaatgccttttctgctatgacactaaataatttgacattattaaaacaatgctggtgccaagcaacatgcatcagagtgtaga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 472 167 NA intergenic
0 chr11 37662872 37662873 1001684 0 + 1104685622841 NA NA SINE Alu AluYa5 aattgaaaaacacattaacaagaccattcactatgatgaagtaggattcatctcaggtatgcaagcatggttcaacatatgcaaatcaataaacatgata
catcatattaataaaatcaagacaaaactatatgaccatttcaagagatgatgaaaaagcatttgaaaaaattcaacatcccttcataagaacaactttg
ggtatagaagaaatatatctcaaaacaataaaaggtatataacatacctacagaatataaaatgggaataaattgaaagcatttcctttaaaacttgaaa
aaaggcaaggatgccaatttttgccactttaattcaacatagtaagtactggaagccctgaccaatgcaattaagaaacGGATGCCTTTCATTTCTTTTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGGATGC
CTTTCATTTCTTTTTaatgggaaagaaaatgataaacttatctttgttttataataatataaaacataatattatatttataaaaaatctacatacacca
ctaaaaactgttagaactcataaatgaattttgtaaacttgtaaaataaaaaatcaatgcacaaaatcagtagcatttatgcatttatatattccaacag
tgagtaattgggaaaaaatatcaataaagcaaccacatttactgtatctacaaaataatttcataagaataaattttaaaaaaagaagtgaaagaactct
agaaaggatattgtaaaatgctgaaaaatgatgattaaagagattgaaggggatacacacaaaaaattgaaagatattccatggttaaggattg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 32848633 32848634 1001685 0 + 1104685624168 NA NA SINE Alu AluYb8 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccagctactcaggaagctgagacaggagaatcacttgaacccag
gaggcggaggttgcattgagccaagatcgcaccactgcactccagcctgggtgacagagcgagactccatctcaaaaaaaaaaaataataataataataa
taataaactaataaacacatagaaaccaaaacaaatgtaacactcccaaactcattcctgaaaaggggcactgcagaaatgttattAAGATAAGATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAGAAAAAAAAAAAAAAAAAGATAAGATTCTTcaccaaatgatacacaagcaacccatgctatgtccaaatgacacaaaagctcaaatagcatagacag
aggattccccgtgtgtgccctggtttgacttacccagtcttggggcccatcaactcccttggataccacttgcaccaccaaagtgttacaggctgctgat
tccatgaaggggacagaagagagggtccccaagacaaaagatttctcagttgctgctaggacactcctggaatcccagccacagaggcagctagccatga
gcagcaactagcactcataagcggttgctgctctgcctgataacatgaacaggtaagccctggtgcactgctgcagccaattgctccatccatggaaacc
aggcaggctagaccaccag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 33581370 33581371 1001686 0 + 1104685623883 NA NA SINE Alu AluYa5 ttctcttcaaaagcctagaggaattgtacaaatctgaataaaagtttttttgaaagagtgaaaaataactatagcttgtacaattcccaaggtgtcattt
tcctgtcccattaatgctatgctgcccaccttaccccgttcagtttggggagtgagggtgtcaccatccagaagtgataaaaatgctaagtgccatctct
tcaccctctgatgggttgagggatagcatgactttaacttctgcatggttacctgttctgcaggtactaacagcatctccttttccaagtcagggaaatt
gagtcattcatttcttcactcacaaccaatctttattgaaggccaactatatgtgagacactgttaaaagcaataggcattagtctttaGCCCATCTTTT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAACAAAAAACAAACAAACAAACAAACAGCCCATCTTTTagaatggagcttctagtctagggaaaggggtgagggtacactgtaaatcagtataa
catatcagtagtggtaaccattgtgaagaaaatagaacagggtaatgaaggggggattagattgttggttaaggaaagtcatttttaagctgcaacttga
aaagcaagagagaactgggcatatagagatctgggaaaagggcattctgagcagagggaatagctagtgcaaaattcctgagatgggaacaagcctgatg
tgttcaagaaggccactgtgggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttc
gagaccagcctggccaacatggtgaaaccccgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C11orf41:NM:012194:12/20
0 chr11 40450595 40450596 1001687 0 + 1104685621969 NA NA SINE Alu AluYa5 ggcagatcatgatcctggctaacatggtgaaaccctgtctctactaaaaaaaatacaaaaaattagctggtcgtggttgcgcatgcctgtagtcccagct
acttgggaggctgaggcaggagactggcgtgaacctgggaggcggagcttgcaatgagccgagattgtcccactgcactccagcctgggtgacagagtga
gactctgtctcaaaataaataaataaataaaagaaactcactcaaaaccgcacaactacatggaaagtgaagaacctgctcctgaatgactactgggtaa
ataatgaaattaagacagaaataaataagttctttgaaaccaatgagaacaaagacacaaggtaccagaatctctgggacacagctCTAAACACTTCTTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
CTAAACACTTCTTTgggaaatttatagcactaaatgcccacaggagaaagcaggaaagatttaaaatcaacaccctaacatcacaattaaaagaactaga
gaagcaaaagcaaacaaattcaaaaactagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacaaataacccctcaaaaa
atcaatgaatccaggagctggttttttgaaaagattaacaaaatagaccactagccagactcataaagaagaaaagagagtataatcaaatagacacaat
aaaaatgataaaagggatatcaacactgatcccacagaaatacaaaccaccatcagagaatactataaacacctctacacaaataaactagaaaatctag
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 92248140 92248141 1001688 0 + 1104685402465 NA NA SINE Alu AluY ggatcactgtgatccttcagagaatgaaagtgatttaaaaacactaaagcattagattacttagtatcattatggctactaatgaatgataataatcatt
attgatatttttgaaagtattaataatagggctaataccaggataatgagattataaataatattttgtgagaacaggttaattttcataaacaagcctt
ttcacagaggctgaacaatagatatcactcttctttcactaaaaaaaaaatctgaccacttttaaaaaattccaattgcttttccctctcattgtgttaa
cataaaactcctccgaatttaaagttctaaaagcaagacttcttccaaaaggctctgcctcctatgccccaagggtttgcaatcatCTGTCTAGGATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAC
TGTCTAGGATCTTttgctgctctttctgataaacagaatgggtaatgaagtgtggttgttagaaatacagttcaggactgcaggagccagacttcctggg
ttcaaatccacacccactttgtgaccatgacaaagcaatcagcttctctgtacctcagctgcctcttctatagcgtgcttctaaatggagtttttctgtc
tttgtatcccgagtgcttgccacagtccctattccaggggtgtgctggtaaaccagttctctaaaaataaaagccctgatttgtagcatttgctgatgac
tgcagtgtaagtacttccaccatggctgatgtcaggctacccgtggtttaacaactgacctgccaaattcctgaatatttaacagttacctcttgggac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FAT3:NM:001008781:21/25
0 chr11 101853537 101853538 1001689 0 - 1104685399739 NA NA SINE Alu AluYa5 gaaagctgaccttgtgaaggtgctggggtctagggagattgttatttaagctttcctttctcataagtctaggacagctgtttttccaatgcccttgttt
tttacaatatctgcaaacatctgaagacaaagctctgtggttggggagaaaggtgagtgggttttgagttttccctggagttatgattttgtttttgtaa
agaatcaattttcaaagcaagtactattgactttaatccgtttttcctcttattttcctgcaagttatttttaaagaattgcatagctccttctataata
acattcagagaatgacctgtccagccaatgacactattttggatttgcctctttgtatcagggtgatttctaaccaaggcagaattCATGAACAATTTTT
GAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAA
TGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAACATGAACAATTTTTtcctagggcttcagaatttaatgcagtgaacctttcaaaagtttgtataaatcattccatataggccttaagatgt
tcccctttcttctgagtacataattcaaccctagaccacttcaccttagaggaaaaggcctctaatattgtccctatcaggccccataactcagccattt
cctggtcaattgtaggaggacctgggagaagttctggccacttattccctctagaggtaagacattcatttgggggctttctggaatgtctgataaccac
agtataatcatgggtgtaaagaacaccccttagtagccagtggaggttcctatgaatggggttataaatggccactaatctttctaactcctctctaaat
ttgataggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 99234634 99234635 1001690 0 - 1104685400480 TCTATTTTATGAGCAAAGCCTTTTT TCAATGTTTCCCTATCCTCCA SINE Alu AluYb8 tcaggtaaagaaagataaatgtttgtttcatctccatttaactatgctactttgagcaagttggttacctccttcaggcacagtttcctaatgttcaaaa
tgtttagaaatgtaaataatgcctaatttgtaggattttttgaagttcaaaatgaaggtaaatgcaaaacattcacctgagtgtctagaacataataatc
acttaataaatcttagcaattattattagcattgtcattaatgtttaaatttaatctaaatgtctgacatttttaaaaattgtgcaagttggtaataata
ttttattgtagcttctattttatgagcaaagcctttttttttcatttctaaaatgaggtaaatcaattaaaatatttttataacatctAAGTTATTTCTT
TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGTTATTTCTTcaaaaaaactctagaaaacaaaatatcactaaattagatgaataaaacttctgccacagaatac
tttctaaaggcaagcacatttattctatttttcatgagggttttaaataaatggaggatagggaaacattgatagctttttcaactgttagtattcttat
aatggaatttagaaaatagaggtcaagttactaggcctgcttgcatattggtgcacagagacatagagattttgtttaataaacatcctagttccatacc
agacattatacaattttttattttggtaatttaatgactgttcaaaaattccatgaattataatttaaataagtctgtaatggttgtgatttcttaggtg
gatgatttactatgtttatgaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 559 223 NA intron:CNTN5:NM:014361:6/25
0 chr11 105675691 105675692 1001691 0 + 1104685398648 NA NA SINE Alu AluYa5 ctggtagcttgactgcagttggagtagccaggatcacccagtcctagggccctttcacttaggcaaccattgatcctctggggagccttctttccaaatc
ttaagaaggacttggtctcctggttgacctttagaggagattgtccctcttttatagaagttgatggtactttattcccaaaatgtaatattgctttctg
aatctgatccacattgataataccatatgttttgactcatttctcagtccagtaaaatgtcagtagtgaggaggagcctcctgtaatccatttcaaatgg
actgggttttaagttgctctttggggcagtgtgaatctgaaagagtgcaataggaaatagccttatccaggtttgctatgtttcttGGCAAAGTTATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGTTATTTCaagttcttttaagggtatgattcatcctttctacctttcctcaggattggggatgccaacag
tcatgtatttataatctattcccaggacttccaaaaagctttgagtgattttagctatgaaacagggtctattgtttccctggagtgactttggaagacc
gaattgaggaattacttcttttagactttcgcaagtatcagtggccttttcagactgggttggatatgctttgacccagccagtaaaagtgtccatgaaa
atgagaaggtatttctatcccaaaagagagggcacctgggtaatatttctttgctagtcttccacagggtaggttccctggtgttggactggcttgacta
gggcaagaggaaccagttgagtct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 100286604 100286605 1001692 0 + 1104685400238 AAAGCACTTTTCCTTGCAACTC TTCCTTAAGCAGCGCTTATTTC SINE Alu AluYb8 cggcagcaactatgatactaaaaacagtactatgctttatatagggtcatttatcttctaggacatccccttctacctcacttctcatcttttttccatc
gagattattattttattgtgattttattttaaatgattacttaattgaaatgcacatactgtggactgacagaaaacatcccattacagtatgaagtctc
tatttttttaaaataatgccatatcaataagaaaacagtgatcatgaacagcatttaggaacaattcatgggttattttccccttccttaagcagcgctt
atttcagagaaaattcttagtttcatgtccacaacaagtaacacaagagacaagaggtagctatatggggttacattactaagtccaaatGCCAAGTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGCCAAGTCTTtacatgagcagtaaatcatggcttttggaggagatgtgagttgcaaggaaaagtgctttttgttttctagagc
atgcttccctagattatagttgtccctcatgtggcctagtcttttatctcagctctttaattttatgcttaaactgagtgtgcttttgttacctacatca
ttggaacccttgagatctttttttctggcctggtggtgtgaaggggcctggtttgaataagagtccaggaagtggttctcagaatgatttttgtattgcc
agaaatgctgatgtattggctccaaattaacatttccaaaaatgtcaccctacacaaactgaaaacaaagatacaagtgtcgtcaccacagctgtgcact
ctcctcctgaaaccagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 503 177 NA intron:FLJ32810:NM:152432:4/24
0 chr11 71998571 71998572 1001693 0 + 1104685115866 NA NA SINE Alu AluYa5 gaacagctgggccacccctggcaactataggaggagaaggagacgtcagccttgactgtctcacagccttcccatcccaggaacagaactcgtccttgca
gagccggaacggagacaaaagtccctgcttctcgctctattaacttggccagagccatggggatcaaagagaaaggtaacagaacaaaggaaacgagggc
caaggcaagatcgtgactcataccagccaccagccatgccctcccgcaagcccttggaagtcctttcagatgtcttcccagtggaaggttgggtctgtgt
tcagaaagcaaagtgattaactgcaagatgaaggagacatggctgggtccccattcatgtgaacatgatatgaggttgagggtcttAACTGTGGTCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AACTGTGGTCTTTTagcatgagcccacagtgtaagcatgactggcaagaaataaaaatgctcaaactgcaggccatattaatagaggtctgttaacccaa
ttgggaagatgacagttcccccacttttatagtctagttagaccatcccctgttcattgtgtcccaggggctgacaagatgacactcatccagaggaggc
gacctatgaaacgagggaattggaaaccaagttttgcatgtgactaagactggataacccagggatgcctcatctaaagcagaggagacccagggttatc
agtctccaactccaatctctcagaccctcctagatgggggatctgaactctgtggccccatggacagcctggggacccataggatttcacaggaggctgg
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PDE2A:NR:026572:2/31
0 chr11 67179366 67203409 1001694 0 - 1104685201356 NA NA SINE Alu AluY tagacaaagctagtcatcatttcaaattatttatctgttaattacctttatatagctggatgtcaggcaactatcataaaagtaagaacctttaaggccg
gatgcTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTC
ACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTTTTTTTTTTTTAGTAGAG
ATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCCAC
AGTAAGAACCTGGCCGGGCGCGTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAG
CTCTGCCTCCCGGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTT
TTTTTTTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGA
TTACAGGCGTGAGCCACagtaagaacctttaagttacatttcagaaggcacaccattcccatcaaaccaacaattttagactagttccattcaccaaaag
attactgtcatgtgaacttgaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ALDH3B2:NM:001031615:1/10
0 chr11 73240442 73240443 1001695 0 - 1104685115523 GCAACTGTATACCACACAACTGG GTTGGTTCCTCTTTCAGCACTT SINE Alu AluYa5 accaagtattaatgtacattttggcataagttcctgacatcttctcggaatggtactttgagaagcactactctaaattactatgttactctgcctcttt
gagctgtaattgcagtttatctttcacattatgttataattatgtttctcggtatgtatgtacatgcatgtatgtgtgcattcactgtgtgtgtgtgtgt
gtgtgtgtgtgtgtatgttccctgaaactaggaggttccccttaatatctcccagaatgtctaatgcagtgctcaccacatagcaagaagaggctcaatc
aatagtttttgaattaattcattaaaaggactttcattaatttagcaactgtataccacacaactggattgtatagtgatattAAGAATGACAGGTTCTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AGAATGACAGGTTCTTtcaatcatgactgaatgtctcccatatggcaggccttgtagtgggtgctaaagaaacaaagaacacagtccccatccagaagga
atgcactgtcagagggaaaaggaactgccacatgaatagatcattcgagcccagagcactaagtgacatgaggtatgtgtcaagtgctgaaagaggaacc
aactctctggggcatcagaaagagataaagcacatttttagaactgaagtactgtcagctatgagagctaaagtcacagcttattatcaaatctcctaaa
gaacatcttttagcacagttgcactctaatgtataaaggtttaaaagttcaaatttggctgaaggacttaaaataagaccctatgtaactgaaaatact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 559 244 NA intron:MRPL48:NM:016055:5/8
0 chr11 88548601 88548602 1001696 0 - 1104685066352 TGGGTCTGCATTACTTGTAACC AAAAATAGACGGGACAGCAGAC SINE Alu AluYa5 tatttaagaaaaaaaaaagtcacggctcatccaaacaacttttttgagacagaacaggctttgcaggtacatggagcagtgtgtgggtgaagaggaagag
aagtttccatggaaatgctgcctctggctggaatcaggaagtcatcacatgatctccacaaggaggcttaatcttttctctctctctttctttcagagcc
acaaagagattaacacaagacttcttgtccctggggagccttgggtctgcattacttgtaaccacatgtggcatttcataattcttttctatgttctcga
agacagaattcaacttatcatgttcaatttaattaagaattttgccttacacttgccccactatcaggcttccagtgaaataactTGATGAAGACTTTCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAA
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGATAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAATGATGAAGACTTTCTtgctctttaagggcttttgtgtctgctgtcccgtctatttttcataatctttagagcctgcttagaggaat
tactaaaatgtacttagtcctattaatttcctttacagggttgattttcttaaataggacagacctctttatttgtccccagtataggccactgtctcct
ctggcctacacgtgttgtagtcttcagtcttattgccagtcttgggttcctaaatattaaatcccatttagagtgctttcttcctgactctagatgtaca
ttctttaggtatcttcagttgtgggatttgaaagggtcctatcctattttgggagattattgtatgacctgacatgaaattactgcaatgctctataaag
tagaattaggggtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 530 202 NA intergenic
0 chr11 126420529 126420530 1001697 0 + 1104685188557 NA NA SINE Alu AluYb8 atagactaaggagactaaagacaatgacatgcaatagatgattttttttactggattctggatcagaaaaagagttataaagaacattattaagacaatt
agaaaaatgtatatatagacagtattttaggtaatactattgtaataatatcttgggaagtaaatgtcttggtaatgcaaaaaacatcatacttgtgtag
gataataccctagttcttagaaaatttaagatatctgtaactaattttcaaatggtttagcaaaaatattcaattgagggagacacacacacacacacac
acacacaaacagatcaaaacattagcaatgaaggagaaagaaaaatgagttttcaccatattttcaactttctgcaggttttaaaattttAAAATAAAAA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTAGTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATAAAATAAAATAAATAAAAAAAAATAAAAAATAAAAActtggggaaaatatgataaactggcattagtttataaattatg
tcattatcctgcatctaaattggaattccttccctttcagttcatccctttccccacatctcagcatcatatagcaagagttgcatggggcctcatggcc
cagtggggcccaggctcgaacaaatttgcggagaagttttgcagcctgctgccacctctgggctctgctgctgcacaaacagggactattcgtggaagct
gtttggctcatcactgaacctaagtgtctggggagcttcagggcctcagtggcctaaggcttcgtgagcccttctgcttagagagttaatgcctgagact
aaaatctggggtaacgggacagatttctgctcagcagcaaaagctgc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 42409766 42409767 1001698 0 - 1104685188721 NA NA SINE Alu AluYb8 aaatggataaattcctcgacacatacaccctcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggagctgaaattgtggcaat
aatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaggtacaaggaggaactggtaccattccttctgaaa
ctattccaatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaagccaggcagagacacaaccaaaaaag
agacttttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactggcaaaccgaatccagcagcacatcAAAAAGCTTATCCACCA
GCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAA
ATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCG
AGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGCTTATCCACCAgatcaagtgg
gcttcatccctgggatgcaaagctggttcaatatacgcaaatcaataaatgtaatccagcatataaacagaaccaaagacaaaaaccatgtgattatctc
aatagatgcagaaaaggcctttgacaaaattcaacaatgcttcatgctaaaaactctcaataaattaggtattggtgggacatatttcaaaataataaga
gctatctatgacaaacccacagccaatatcatactgaatgtgcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcac
cactcctattcaacatagtgttggaagttctcaccaggacaattaggcaggagaaggaaataaagggtattca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 130181134 130181135 1001699 0 + 1104685189399 CAGACAATGGAAATGAGTCTGC AAATGCTGTTCCCATGAGTTCT SINE Alu AluY ctacctgggaggctgaggcaggagaatcacctgaacccaggaggcagaggttgcggtgagccgagatcgtgctattgcactccggcctgggcaacaagag
tgaaactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgaggtggtcaccctccacagacaatggaaatgagtctgcaggttccaagaccg
ttgtactccacagtcatgctctgactgtaagatcttctactaaaaacaaaattctgtggacctaagcgactagctgtgtacgaggctctgggaacacaca
gtgagcagcacaagcagtcctgccttgggaggcctggtctagaggctgcacgtaaagacaaggacaatgtggcttgagaagttcgtAAAAAGAAGCACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGACCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGTGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAACGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGAGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AAGCACAGaggtcagaactcatgggaacagcatttgatacagacatggggctaatggggctgggggtaggaagaagccatatcagactatttctttcaga
aaaagttggacttcattttcgaaatctaacaagttcacttgcatccctgtgacaattgtctcacttctgaatccaaattcttagctgaggcataaatagc
cttagcctgggcttgtcaccagatgaagtccaataccttcacctccagtattttctaaggaaaatatgtccttacgtctctgtcggggaatctccttcag
gacagatgagttccagaggtgtccctgtgtgtggcacccaggaggttttcacagtgcaagaaatgtgcctttgggagattcaggatgggtgaga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 571 264 NA intergenic
0 chr12 858222 858223 1001700 0 - 1104685487550 GTGCACATACATGCACAACAGT AAGGTGCTCTGGTAACTGAACC SINE Alu AluYb8 gttacagtagttactgaaattcaaatgaattccttcccagtggaattaagatttcattcgtattatttctaaaattcttaagtccaacatggctcaataa
aaattggtataattcacatatttcactcattctaggatgcaatcatccctctccactacctgatcattttaacatgtgagaaattgggatctactttata
actgataatgtggtacataaaatatggtacattttaaagttgatagcatctcagatgtgatgaaatattagggtaacaatacactgtgcacatacatgca
caacagtactcaaaaataaagttgaaaaaaggtcattcagaaaagcataccttctacagggtacttctcaagtgattaggaggactacttaaTTTTTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
TTTTTTTTacattccacacagtaaacagtgcagaaatctacatgaaaataaagcatagtttcaaacctagaatatcagacatagctgacacaattctagg
gaatgtcataggttcagttaccagagcacctttatttaacctgttatttctaatacctgttacatcaattttggactggtaagactagaagtgaaacttt
ggattgtcactgctgtcagtaacgtacccatttacattaaataatgcatatgcaccaatgaggtgatcttcacttcatttctgcaatgagattaacctac
ttcaagggttggttacccttagaagaaaaggtagaagtctatccacatgaaaggacaagttacatggaaatcccttttagcaccctttcagaaattaaga
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 547 240 NA intron:WNK1:NM:018979:10/28
0 chr12 7495248 7495249 1001701 0 - 1104685069300 ATTGGGTTGACAACAGAAGGAG CTCAAGGTTTGCCTTTGTCTCT SINE Alu AluYa5 taaatgacttgcttaaaagcatgcagctagtaatgacagagctgaaatttgaacccaggtgctctggctcaagcggccacattcctcaccatcatgttat
attgcttttcaaaacaaaatacagtttatatggagccaagacatttcaatttccattgtcttatacccacttaagcataaatttgtgaaactgttagtct
ttgtaggtaacctgtttactttgaggaaacaagggcaagcctagaataagggccacctccatacagataagaaacaaatctatatgagcaaaattgtcct
ctcaaggtttgcctttgtctctgtctagtctcaatttttcttatttttaatgtctatatcacttggtcacttcagtcacctagttAAAAAAATCACGTTC
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATCACGTTCttggaaaatgatgtact
ttagaaataaaaatgtttatctttgccaccttaataattattagattacttttcttaatgactcctttacagaattctctccttctgttgtcaacccaat
acaattcattcattattaataatctctctctctctctctattgtacgttgtaatataacagtcctaacatttcttgtttaattggctcctaagtaagttt
gtgcatttgttatcattataaatgtatcttttttcttccaattttaaaccggattattactaatgtaatgcagatttctgtttctcttgaaaatcaggag
gtctgaaaacattgggccatcatttcaacatgacaacggtgaattggaggtgagtaacctcttcttcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 500 218 NA intergenic
0 chr11 117188717 117188718 1001702 0 + 1104685395565 NA NA SINE Alu AluYb8 aagttagttcaggatctatgccttatcaaccaaattgttttgcctatccaccccatggtgccaaacccatatactctcctatcctcaatacctccctcca
caatccattattctgttctggatctcaaacgtgctttctttactattcctttgcacccgtcatcccagcctctcttcgcttcacttggactgaccctgac
acccatcaggctcagcaaattacctgggctgtactgccacaaggcttcacagacagcccccattacttcagtcaagcccaaatttcatcctcatctgtta
cctatctcggcataattctcgtaaaaacacacgtgctctccctgctgatcgtgtccgattaatctcccaaacctcaatcctttacAGGAGTTGTTGTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCTGCAGTCCGGCCTGCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAGGAGTTGTTGTTTTtccttcctaggcatggttagtgcagtcaaaattcttacacaagagccaggaccgcaccctgtagcctttctgtgcaaacaac
ttgaccttactgttttagcctagccctcatgtctgcgtgcagcggctgccactgctttaatacttttagaggcctttcctacaaggtctgagaaggccac
cacagtcatttcttcccttctgtcagacataattcctcagtttagccttcccacctctatacagtctgataacagaccagcctttattagtcaaatcagc
caagcattttttcaggctcttagtattcagtgacagactaatggtctattaaaaacacacctcaccaagctcagccaccaacttaaaaaggactggacaa
tac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 30362336 30362337 1001703 0 + 1104685709027 NA NA SINE Alu AluY gccacacaatctggaaacctttttttggaggttgggtgggatctagcccgtgtgctcacaggtgcctgttccccctctgctgacagttattccactaagc
tgaagttgcctgtagtctcccacattagacactaagctctgggaggcagggcggctgtgtctgcagtcttgttgtatccccagcacccagcacagcacct
gacacatggtagatgttcaatacatgttggctgaattaattattgttttaaaatcatttttaatatttgtgcatgtatgttcacaacaggcttatttaca
atagctaaaagatggaaacaacccaagagctcactgatggatgaatggataaacatagtgtgctacggatataagtgaaaattatttagcctAAAAAGGA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAGGAaagaaactctagcacacactgcaacatagaggaaccttgaggatattatgctaagtgaattaagccaggcactaaaggagaaacactgt
ataattccttttatatgagcttcctagactcatcaaattcatggagatagagagttaaacaatgtttgccaaaggctaaggggaagagagaatggggagc
tcatgtttaataggtagagagtttcagtttgggaaggtgagaatgttctagaggcatatggtggtgaatgccatagatctgtaaacttaaaaatgggtaa
gatggtaaattgtatgttatgtgtattttaccacaataaaaatgaccacactgaaaatcttgtttatgatattccaagtgaaaaaaataaaacctctagg
tag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 40133990 40133991 1001704 0 + 1104685300470 GTGCCCTTCGATTGATTATTTC ATTCACCAAAACAATCCCTGAC SINE Alu AluY tgagtgctaataccaaatcatgtagcaacacagtttcacctactaaatattgccagaccatattgttgaagtctgtgctgccacggtcacctcatcagga
tgttttctgtcctgtgactagtggcttcaaatgtactcatccatcttcttgtcccattacatttggtgtgactgatgttctgtacccattaaaattgatg
ggagagaacaaagagaagaaaaatgtgcccttcgattgattatttctctgaaagcgtaaatgaaaattctccagtaccaacaagagatttagagtggggg
gtttcccccatttattaagtgctttaattagcaggtttacgaaacagagtttcctgtttataagggtgcgtttttcagctcacttAAAATTTAATCTCCT
TGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAG
CTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCGGAGATTGCGCCACTGCACTCCCGCCTGGGCCGCAGAGC
AAGACTCCGTCTCAAAAAAAAAAAAAAAAAATTTAATCTCCTtctgaaatgtttgatctttataagatgaatttaatagctgtaacattgtttatagtca
gggattgttttggtgaattctcagtaccagaaccaattaaatcagatgccttcgtgtcaggtttttttcttctgatgagctatcataatggctcatttta
tgctctgtgatagccaataattaaattgaccattgttgtaagctgaagccaaaaccaaagtgattttggaaggctcaatcttcctaggtttttcttggat
ctattgaatgttatctttgtgttcaacaaattgcagaacagcaagatatctctgcaatactcacaacacatttgtttaattacattattgaatgtgttag
gggaaaaataaagcctgcccactggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 494 253 NA intron:PDZRN4:NM:013377:1/8
0 chr12 37664520 37664521 1001705 0 + 1104685491959 CTGCAGGGATTCATTTGTTCTT ACTGGACTTGCTTATTTCATGC SINE Alu AluYa5 tacactctactataaagaaacctcactgcagggattcatttgttcttaataatttatttatttattttagaattgggatctcactctggactccagtcca
ggccagagtttggtggcatgataatagctcactagcagcctcaaacacccaagcctcctgagtagctaggactaaaggtgcatgccaccatgcctgtcta
atgtttgggtttttgtgttgttcagtttggtttggtttggttttttaaattttctagactcagtatctcactatgttgcttaggctggtcatgaactcct
ggcatcaagcaatcctcctcccttgacctcagagtcattgggattacaggtatgagccactgtgcctggccccatttgctcttaagaatttaaatNNNNN
CCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC
TACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCA
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAATTTAAATG
TTTGCNNNNNataagcaagtccagtctgcttctaaaaaaaaaattaccgcatcttttatcttaaatatttgctgatctacatatggccaattccactatt
ttgagaagagtaagcaattctaaacataaggcttcacaaagagccaagtcatcagaattacacagcccaaggctctagaggtcatataaaaacaataaaa
aatctccaatttaatgaatttatttttttctataaaatatctataaagcatatactgagtcaaaccaagttgcttcaggaaaatacacatacacagatct
ttcccctttggaaaaaaggaaatatttgacttttaaaattattctgttgaattaaaatattccagttaaaatgaattaggctgtacacatatttaatctt
atatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 700 398 NA intergenic
0 chr12 42004208 42004209 1001706 0 - 1104685301028 AATGTACCACCCACCAAGACTC CACTGGGTGGGGTATTAGGATA SINE Alu AluYb8 gatgtccttaacacaaaagaaatggaaacttgcaaataagtgccttgagaaattcagtgttgtttaagactgaaaataagacacataaaaaatttaatta
aataaagattctttttagtcattaagttttagaatggagaaaattctgtgtgacatttccctgctgtttcattagcactaatgtctcactgggtggggta
ttaggataaaatcctaagcaaatattttcagtattgcaagaagaatgctaagtctgctgttagaagaaaatgaagaaagtcaaagaaggaaagacactga
agcttttgtgacctgtctctgccatgaatctgcagggatttgagaatgaaagagggattcaagaatggctcaattaaaaagttacattAAGAATATTTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAATATTTGGaaactagagtcttggtgggtggtacattaaaagggaaaaaatcatgggaaatgaagataagtgcca
gagaaaaaaacagaattgggaaggagaggtaaacatttagaaaataaatatttaattagtaagttggtaaatccactaaatttaaaaaaagagattaata
tcagtttcaagaggacagtttgaagagcaggctgtatcagcagtcacacctaaaacagggaccgaagtcaaaaaaggcatgggaaaacaaatcctgtgga
acttcccaaatctcatttcagtcgaaactgtccagtttctcttttacttttttttttaaatcttttgaaaacaatgaccaggggtttatcactttcagct
ttaccattttacgttacaggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 576 243 NA intergenic
0 chr12 18642901 18642902 1001707 0 + 1104685705423 NA NA SINE Alu AluY gatatagatcaatggaacagaacagagccctcagaaaaaacgccgcatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaa
aggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggaacccttccttacaccttatacaaaaatcaattc
aagatggattaaagacttaaacgttagacctaaaaccataaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttca
tgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagaacttctgcacagAAAAGAAACTACCATCAGA
ACACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGAGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCAGAG
ATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACTACCATCAGAgtgaacag
gcaacctacaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaa
caaacaaccccatcaaaaagtgggcgaaggacatgaacagacgcttctcaaaagaagacatttatgcagccaaaaaacacatgagaaaatgctcaccatc
actggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctgg
agaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccactgtggaagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PIK3C2G:NM:004570:29/32
0 chr12 9260506 9260507 1001708 0 + 1104685070068 NA NA SINE Alu AluY tgccctgaatggcttttgggtaaacaatgaaattaaagcagaaatcaagaaattctttgaaacgaatgagaacaaagatagaaaataccagaatatcgga
gacacgtctaaagcagtgttaagagggaagtttataaggctaaacattcacatcaaaaagttacaagatctcaaagtaacaacctagcatcatatctaga
ggaactagagatataagagtaaaccaaccccaaagctagcaggagaaatgaaataaccaaaatcagaatttaaatggaggaagttaagatgcaaaataaa
taaataaataaatacaaaagatcaatgaattgaggagtggatttttgaaaggatagataaggttgatagaacactagatagactaaAAAGAAAAAAAGAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGTCTCTACTAAAAAAACACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGTCTGTAGTCCCAGCTACGCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAGAAAAAAAGAGagaagatccaaataagtacaatcagaaatgaaaatgagaatttaccaccaactccacagaaatgcaaaagaacctcagatactact
aaggacacctctgtgcaaacaaactagaaaacctataagaaatggataaattcctgaaaacattcaacctcccaagactgaaccaagaagagactgaatc
cctgaacagagctataataatttctgatattgaatcagtaataaaatgcctaccaaccagaaaaagcccaagaccagattcacagccaaattctaccaga
tacataaagaagagatggtaccattcctattgaaattacttccaaaagttgaggaggaaggactcctccctaaatcattctatgaggctagcattatctt
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 14065146 14065147 1001709 0 - 1104685704216 NA NA SINE Alu AluYa5 gttggaaatttcaacatccttcttttagtaattgacagaactagacagaatatcagtaaggatattcacgacttgaacaacaccattaaccaacttgatg
taaataatatatagagcactctatccaacaacagcagggtacacatttttttcaagtgtacatggaacattttccatgataaataataatactatagact
gtcaaacacatctcagaatatgatttttgactaaaaaaattcaggaaaccaacaacggaaaagtatttaggacttcacaaatatttggaatttcaacaaa
tagttttagaaaaacagtgagtcaaagatgaaatcaccaggtaagttagaaaatatgcttaactgaataatgattaaaacctaatctatcAAAATTTATG
GGCCGGGCGCGGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATTTATGgaggtagctaaagtagtgcttacagacaaacttaatgttaagtgcttatattagaaagaaaatagatctaaaatcaatttcctaag
cttccacctcaagaagctagacaaagaatggtaagttaaatctcaagtaagcatagggaagaatataataaagaccaaaaaagaaataaatgaaatacaa
attggaaaaacagagtaaatccacaaaatcaaaagtttgtttatttaagatcagtaaaactgataaacatttagctacactaacaaaaaaagagatagaa
gacaaattaacaaaatcaagaatgaaagaacatcaccacagatcctgcagaaattaaaagaattagaagggaatattatgccaatgaattagacaatgta
gatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 14277474 14277475 1001710 0 - 1104685704314 NA NA SINE Alu AluYa5 ctggatgggtaggataggggagttgtaaggagaatctgtaggctttaagaggccatgtggtaacaggcgggtgataacaggctttaacccttttaaagcc
tgctgtgggatgggatattggcattgagtggggtaagggtgattacgttttaatgggatggtaaagggtgcctgatcggtcaccaaggagggagtagagg
tatcccatatttgtggattaaggtacggagacatgagaggaggatgtgaagggagctttgaactggggaaaagggtggcaataacgtgtggctatagccc
aggaatagtcatggaagcagataatttagttaaaatgtctcgacctaataagggagctgggcaggtggggataactaaaaaggagtgcataaaataaTGT
TGTCCAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGCGGATCACGAGGTTGGAGATTGAGACCACAGTTAAACCC
TGTCGCTACTAAAAATACAAAAAATTAGCCAGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGAGGCGGAGCTTG
CATTGACCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGCATGTTTGTcaagttg
gcaccagaattggggagttttaagaggtttagaagcctggtcgtgaatacccacaacagttacggaaacagtcccttgaaaagaaggtaatgtggagtgg
gtagcctccatattgattaagaaggggacggagttaccctccactgtaagagttacccaaagcgtctgtgatggtccaggaggcttccgaggcaatcagg
cagcatcagtcttcagccactaagccgggaagatctgggaaggagtcagtcagagagccttgggccagagttgcaggggctctgggagtggctgccaggc
gagttggacagtctcatttccagtggggtcccgcacagatgggacacggcttaggaggaatcctgggctgcgggcattccttggcccagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 69811747 69811748 1001711 0 + 1104685238805 NA NA SINE Alu AluYb9 atataacctgtagtctggtagattatttattgagttactttaaatcttagcgacatactttaagtattaatgacagcaattccccttcagggcagagcct
ctttaattttgataagatcagtgaaaaagatcagtagtcaaggaaagggtagtttcccctgagatactttctatttccttttataaattattttcagtag
cagttactaaaccaaaacatttctagattgaaaagaatcttcgggtattatagatattaatattaattcattgtgatttatagtggtttttaatgtatct
gcctctcaactagattgtaatctcctagaggatccagaagcatgtctgatcctagcaagggtctgtctgacatgtagtaggcactgTTACTGTTATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAATTACTGTTATTCTTtaaatgaaatactaatatcaattgtaatttttgtacacatttcttctaagcagaacgaacaacttatgaagggacaga
tgtcatgttcttcatgaagccatatcctgaaccccacagactaagtgagatggggtcccataacaccttgcacccatctctatccaagagatactagtag
accattggattgaagttgcctaactatctttctctcttccttacttgagcatcagctccatgagtgcagacattgtgctctgttcaggaatgaattcccg
gtgactggtagaaagcttggcgcataggaggtggtcagtaagtatttgatgaactgatcaataagaagaactaggacatccatgtattgacattcacaag
tcacataa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TSPAN8:NM:004616:7/9
0 chr12 74217369 74217370 1001712 0 - 1104685237810 AATGCATGAGTTGGAGAAAACA TCCTGAAGACACTGAACTGCAA SINE Alu AluYg6 acagaattagccaggcatggtggcacatgcctgtaatcccagctactcaggatgctgagacaggagaatcacttgaacctgggaagcggaggttgtggtg
agctgagattgtgccattgcactctagcctggggaacaagagcaaaactccatctcaaaaaaaaaaaaataataaattgtgacaatgctttgttatttaa
ggggaaatatacattttggaattaggtaagagttcattttaatcaaaacatagcaacaccatcacatggaatcgctcaagtctgccaaatttctagttaa
aatgcatgagttggagaaaacatttaagaatatttgatatgtttataccaatctaggactgtttatctctggactactttacatGAAGATTATTTTCTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGATGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAGATTATTTTCTTTtaggtattttaagctgcagcttttttagcttgttttgttatttgtaaccaaacaaaactaatggaattcataacagatata
gtacccaagaatgtgtcaaatatcaacaaggtagcagacatcaacttttcatctaacctgaagtttagaaaattgcagttcagtgtcttcaggaatttct
tgattctacctgttctgtagtgacagcacctgaaatcattgttttattgtctctctttgcaagagtgtgggtatccccaagcatgcctaagggaaatcag
gggcatatgttgagttcccttctctgatcagtttacatttttatttatagttatatttttgtgtttaaggacaatacatgccagtcaactacagcataaa
act Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 594 276 NA intergenic
0 chr12 82689628 82689629 1001713 0 + 1104685534804 CTGCCAATTATTCTGCTTGCTT TGGTTTCTAGGTTTGACACAAATG SINE Alu AluYb8 aactccccaaagtgacatgaattcacatacaatgggcacaagggtttcagttttacttattacaagcacatcatagaaggaaattgttgtatttatgtgt
tatcaggctagtttcagatatcctacatgccactcctggtgtggcattaaacaagtgacctaacctctccctctgcctcagttgaatttgcattacagtg
aggcataattggttaccccatggagatgtcagggttaaatgatataacccatatggcacatactaaacttaatatctggcacgtattaagcaatcaataa
ataactctaagttgttacaccataataagatgaattcctaatttggtttctaggtttgacacaaatgtaactctaaatggagtatATGTGACCTTTTTCT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATGTGACCTTTTTCTttgttgacttcaaaatgtctctacccacttttttgctatgaagcaagcagaataattggcagcaat
actagccttcttgttccccttgtccctgaatactctttgctacactctgaccctaaagacagggtgatacttttcaaaattctattcatgtctacctcat
ttcattcagaatttacaatataaccatggatgccactatgctattttggggccataatagaaactggactttgcgttattggttctatactcaaaatgtg
gtccattgacatgcagcattaacatcactctggagatcagagatacatagctctaacactcactgaatcagaatagcagatctcactgaatcagatgcag
atccccgcatctctacccc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 453 120 NA intergenic
0 chr12 43350644 43350645 1001714 0 + 1104685301299 NA NA SINE Alu AluY aatgaaataattgatcatcgttataccagccctacaaaaaatgtttaaggtaatcctatatctgaaagtgaaagaaagatatctaccatcatgaaaacac
aagaaagtataaaactcactggtagagcagatatacaaataagaaagagaaaggagtcaaatattatcactataaaaaaaccccatcaaattgtaaagta
aacaacagaagaggaagaaagaatatgtaaaacaatcagaaaataattaacaatatgacagaaatccccacctattaataaaaaccttgaaagtaaatgg
cttaaattcatcaattaaaagatataaaacagctgaatgtattaaaaaacaagatgcaagtacaagaaacctatttcatctaAAAGATACACATAGACTA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAGATACACATAGACTAaaagagaagggacgaaaaaaaatccatgcaaatgaaaaccaaaagtgtgaaggagtagctatgtttatatcagaaat
tgacttcaagttaaaaaacataaaaagggccaaagtaggtcaatatagatgacaaaggaatcaattcagtaggaagatacaacaattgtaattgtatacg
cacctaacacaagagcacccagttatataaagaaaatactattatagctaaagagagagaccccaatataacaatagctgtgaacttcaacaccctcgtt
ttagcactgggcagatcatatagacagaaaatcaacaaagaaagatcagacttaatctgcactacatactacatggagttaacatttacagaaaatttta
cccaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NELL2:NM:001145110:13/21
0 chr12 43417414 43417415 1001715 0 - 1104685301307 CCATTGTATTCATTGGGACAAA AGCAGGCAAACAAATGAGAAAT SINE Alu AluYa5 ttaaatgacaatatggaattaatgaagagcaaaacccacgtataatgaccaatagaaagtggaagaatgattctctgtgggccaatactcatttaatgat
gcaggttgatcacaattgttgtgtggccatgtaacaatactctgagagctggacttatgtatttaccatggggggattattacagagcaataagaagtat
gtggcaaaaaccaattacagaaaaagaaatgatttcgaattaaaataacactaataatattcttagagatttgttgcatgaaaaatgagaaaggaatttg
ggaggagcaggcaaacaaatgagaaatctgcctattaaagaggcataattttatcaactaagaacaaacaagttttttgtttattatAAAAAAGTTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAGTTATTGttgtgaactaaatgtgtgcatgttgagactgtttgtcccaatgaatacaatggcaatactgctttattctgatcaattatgca
tgaccaagaaaatggttatttagcagctagacatgagggacttatagcaaaataaaatactcaaaaattaaacatactttatcttaatctgagcaacttc
actctgaatattagaaaagtaccaattttaatatagtatgtggtatttattttgaatttttacataatttttacaaaatagaaaaatattacctatcaat
attttgataaaatttcaatatctaaaaataatatttttatgtaactacagcactgaaaataaatcaggacagtaaatcagatcaatgagtaaacaaatac
gaga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 465 149 NA intron:NELL2:NM:001145110:10/21
0 chr12 43705822 43705823 1001716 0 + 1104685301380 NA NA SINE Alu AluYa5 cctacacaaagaacacacccctgcttgattttagccctatgagacccatttcagggtctgacctctataactataaaataataagtacctgttgctttaa
gacactcagttcatggtaatttgttacagcaacaatagaaaactaatacactgggtatcaggctcactgagccaattgctgaagaaaccagacaaagagc
acatagttcccaccctaaaggagctcaccttcttatgggaggggtgacccatgaacattcactctgtaacatagcaccaggaaggcagctactatgtaac
atagcaccagaaaggcagctactatgcattctggtgcttaataattatttactgaataaacaagtaaatgaatgtcataagtactagaaAGAAAGATCTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AGAAAGATCTGcaaagtgcactggcatcacaaaggaggaaatgatgagttcggagaaaacagtcaggttgagtcaagtataaaagaacaataccgtttaa
gagagaaagaaccaaagccaattcaaacagttactagtatgtctgaaagcccaaggaataaagtctatccaaggaaaagtaagcagtcatcaaggctggg
gaaaggcataaagcagaggctgcatgagggcaaccatatccagcctgcaaatgggctttttttggtcttagcatgttggttaagaattctgatttagttg
tccacatttaaaaagcgggaagtttcacataaagtccagatttctgacacctcttcaaaggtaaccacactgggctcagagtgagtagcaggtgcctctt
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DBX2:NM:001004329:2/4
0 chr12 53442004 53442005 1001717 0 + 1104685052707 NA NA SINE Alu AluYa5 gtgagccgagttcatgacattacactccagcctgggcaacaaaagcaaaacaccgtttcaaaaaaaaaaaaaattcacaatagcaaagacttggaactaa
cccaaatgtccatcaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatctcctttg
tagggacatggatgaagctggaaaccatcattctgagcaaactattgcaaggacagaaaaacaaacaccgcatgttctcactcataggtgggaattgaac
aatgagaacatttggacacaggatggggaacatcacacaccagggcctgtcatggggttgggggagaggggaggggtagcattaAAGATATACCTAATGT
TGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGG
GCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCA
GCCTGGGCGACAGAGCGAGACTCCGTCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATATACCTAATGTaaatgacg
agttaacgggtgcagcacatcaacatggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataataagaata
gtaaaaaagaaagctttggaacatgaaaaaaaatcagaaataattcagagagtgctgctattactacatttattctcattatactagagtttctagcctg
attattaaaatcagaaaaggaaataaagggtcaaatagttggaaaggaagaaagaaaaaaatgtcgttatttgtggatggcctgattatctatataaaat
caaaaatcaaaataacctataatttatcaaaattaatatacttcaatatcttcatttataaaatatagataataat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 59824221 59824222 1001718 0 - 1104685241322 NA NA SINE Alu AluY acaacctacagaatgatgagccaaaaaaacctcttctctttataagctatgcagcctcaggtatctctttatagcaacacaaaaagggactcacaaaaat
aattcttataaaaattatgtgattatttatttaatgctgtattctatactactatatcataacttagtaaagaacaagatcacacttgtgtagttcactc
ctgtgtacccagtgcctaactagtacttagcatttgttcctcattcaccatatatttatttatagtccctctttcaaaatcatcaggtacaaataatatt
ttctcaacaaatgttgataaaattatgtttatctaaataaatacataaattcaaataatattataccaagaataattgaaaccccTGTCTCAGATTTCTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACTCCGGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATGTCTCAGATTTCTTta
gtttgtgtcattctagagtttatactttaaatgaaatgtaaatatgcacagaatatgtttgggaatcaattacaccacaataaaccaacgagaaaaatat
acaatgcaaactatattcctttattagttagggtttttcagaaaaacaaaccattaggaaatgtataataatatttactctaaggaaggggctcacatga
tgatgaaggaggctgggaagtcctacgatctgccatctgcaagctgaaggaacaggaagttctgtggtataattcaaaaacttgagagctagaaagtcaa
tggtagatttcatccagtttgagcctgatgtcctgagaaccagggttgctttgtcagaagaaagttaatgtcccagctcaagc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 46016959 46016960 1001719 0 - 1104685301895 NA NA SINE Alu AluY aaaaacacaaaaattagccaggcatgctggtgcatgcctgtaatccctgctactcgtgaggctgaggttggagaatcacttaaaccctggaggcagaggt
tgcagtgagctgagattgcaccactgcactccagcctgggcaacagaatgagattctgtctcaaaaaaaaaattatatattgtctaagtactataacatt
accctaattgtgtatagaaaaattactaagactattacaagcaggggagggtaaagggaggcataatttttatacttcactcaaactggtaaaatgaaaa
cttcaatagactgtgattagttgtgcatatattatgtcacacctaaaacaccaaaaaataaaaaagttatacaaatacatacactaaaaaaTGCTATAGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCACAAAAAAAAAAAGGAAACG
ACACTGGAATACTCACCGGCTAGTGCTACGTTGCTATAGGaaatataaattgaattctaaaagagtaactctcagaaagacaggaaagacaaatgaaaac
aaagatcaaacaaaaaacaaaaccaaaaaaattacagtaaatggaaatggtctaaatatatcaattaaaagatattgttacagtggattataaaacatga
cccaactatatgctgtctacaagaaactcacttcaaatacaatgatataggcaagatgaaagcaaaaggatagaaaaatatattgtgtaaatattaattt
taaaaagcaagagtagacatattattaggtacactaggctttagaaaaaagaaaattaccagagacagagagggatattatataatgataaaagggtcag
tccaccaaaagacatagtaatcctaaatgtg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 114215476 114215477 1001720 0 - 1104685141787 NA NA SINE Alu AluY ctatgagtttgactctttttcagttttcatataaaagtgagatcatgcagaatttgtctttctgtgtctggcttatttcacttagcaaaatgtcttcgag
gttcatccatgttgtcacaaatgacaggattgcctctttttaaatgtttaatagtattttattgtgtttatatgatccccaaagcacaggcaacagaagc
aaaaattgacaaataggattacatcaaactaaaaggcttatgtacagcaaagggaacaatgaacagagtggaaagatgacctacagaataggagaaaata
ttttcaaattgtacttctgataaaggattaatacccaaaatatataagaaactcctagaactcaagaaaatgagtaacctgattAAGAAACAGGCAAAGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AGAAACAGGCAAAGGcatgaaaagacatttctcaaaagaagacctacaaatggccaacaggtttatgtaaacatgctcaatatcactgatcatcagggaa
atgcaaatgaaaaccacagtgatttatcacctcacacctgttagaaaggctattatcaaaaaaagatcatgaatgttggccagggtgtggagaaaaggga
actcttttacactgttggtgggaatgtaaattggtgcagccactatggaaaacagtgtggaggttcctcaaaaaactaaaaatagaaccatttgatccag
caaccccgcttctgaattatatacccaaaggaaataaaatcagtaagtcaaagagatatttgtactcctatgttcattgtattattcatatcagccaag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 96019491 96019492 1001721 0 + 1104685531254 NA NA SINE Alu AluYb8 aaataccatagactgagtgggttatagacaacaaaaacttatttctcacagttttggaggctgggtagtccaagatcagtagatgattttggtgccagta
gattcagggtctggtgccagtagattcaatgtctggtgagaactcccattctggaagaagggttgaaggagctctccagggcctctttcataagggcact
aatcccatttatgaggacaatgccctcatgacccagtcatttaccaaaggccccaccttctactaacatcatattaggggatagaatttcaacatatgaa
ttttggggagacacaagccttcagtctataccacctactgtatctgaaggtaggtgaatctaaattgataaaaattctaactttttCTACATTTGTTTTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACTACATTTGTTTTTggcaatacaatggataaaagatagttttttcaagaatggtgctggaaaaactgaacatcca
caagcaaaaagaaaataaaaggaatctagacacagaccaccttattcttttcagaaaaattaactcacagtggatcacagacctaaatgtaaaatgcaaa
actatgaaactcctagaagataacataggagaaaatctagataactttgagttcgataatgactttttaggtataacttaaaggcacaatccatgaaaga
aatagttgataagctggacatcattgaaattaaaagtttctcctttgtgaaagactttgtcaagagaaaaaaagataagccatagactgggagaaaatat
ttgcaaaaggcatacctgataaagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 103841294 103841295 1001722 0 - 1104685529423 NA NA SINE Alu AluYb9 tttgggacttctctctttttttcatagtctagctaaaagtttgttgattttatcttttcaaaaaataactttttgtttcattgatctgtatttttttagt
ctgaatttcattatttctgctgtgatctttatttaatttcttttcttctactaatttggggtttgaattgttcttgcttttctagttccttggggtgcat
agttaagttgtttatttgaagtctttctAAAAAATTAGCCAGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGT
GTGAATCCAGGAGGCGGAGCTTGAAGTGAGCCGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAA
TTTTTTTTTTAAAAAATTAGCCAGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGTGTGAATCCAGGAGGCGGA
GCTTGAAGTGAGCCGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAattttttgtatttttagt
agagacggggtttcaccttgttagccaggatggtctcgacctcctgacctcgtgacccgcacgcctcggcctcccaaagtgctgggattacaggcatgag
ccaccgcgcccggcctctattttttgacatagtatttattgttataaactttcctcttaatactgctattgctgtattccatagattttgacatgttgta
ttttcatttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SLC41A2:NM:032148:1/10
0 chr13 28436891 28436892 1001723 0 - 1104685354522 GCAGAGATGCTGTTCAGAAATG TTGTTTCAATGAACTGGGTCAG SINE Alu AluYa5 gagagatcataaatcacaaccatccgtgtgaacttcattatgacaacacgggttaaaacaagagactctctccactatgttaccaaaatggaaagtgaca
cacatatgccatggggtgattgcaattactgcgctgctcatcagctaaagggagcaatcgcacacaaaccgcatgtttctaaaatgggagccccatcaaa
acagggagcatatgggactatcagatatacatgcacagcaggagaccctgccaagatgagcagagttgagctcgggaacgcagagatgctgttcagaaat
gtgcaatcgagaaaggccagccatcaccacaaggtatggatgggactttgggcattagggttcttctaacccaagacccaggcatCTTTTTTGTGTTTTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCAACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAACTTTTTTGTGTTTTTcttcttgtacatgactaaagctcagacagactgaaacactgacccagttcattgaaacaatgacccagttcacttg
aggtccccaaagcaatgcccaaaaagcagcaacagatctgtttatccccaatgtcacttgcaactctgcagacacacctgcaatcaccatccttcataat
tcagcgtacctctcaagtgccaggcagtgtttaggtgcagtggctgtgccagtgaacaagacaagactggccggtttgacaaatagagatgcgttgctgc
tggtggtgttaatgggtcggaattttattctaagctgtgcaaggaatgacacaatccaatttacattttcaaatttctcttaatcacagaataaagacca
gatgagagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 505 182 NA intergenic
0 chr13 35614817 35614818 1001724 0 - 1104685160224 NA NA SINE Alu AluYa5 tcaaggatgcagaaatcttgagagctatcatagcatgttttctgccagtagtcccttatatttgtctttttataaatcttattatggctttattctggtt
tAGGCTGGGCACGGTAGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTGAAGCAGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGTTAACAC
GGTGGAACATCATCTCTGCTAAAAAATACAAAAAAATTAGCCGGACGTGGTGGTGGACGCCTGTAGTCCCAGCTACTCGGCAGGCTGAGGCAGGATAATG
GAGTGAACCGGGAGGTGGAGCTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAA
NNNNNNNNNNNNNNNNNNNNAGGCTGGGCACGGTAGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTGAAGCAGGCGGATCATGAGGTCAGGAGATCG
AGACCATCCTGGTTAACACGGTGGAACATCATCTCTGCTAAAAAATACAAAAAAATTAGCCGGACGTGGTGGTGGACGCCTGTAGTCCCAGCTACTCGGC
AGGCTGAGGCAGGATAATGGAGTGAACCGGGAGGTGGAGCTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCCTGT
CTCAAAAAAAAAAAAAAAAgttgttttctttctaacttctgaagttagatgcttagttcattggttttctaaagtattttctaaaggccattatgatttc
tcctttgaacaatgtacaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter RI sequence unavailable NA NA NA NA intergenic
0 chr13 36847995 36847996 1001725 0 - 1104685159858 ATTGAAAGGAAGCAGCAAAGAC ATGACTTGACAGCTCAATTTGG SINE Alu AluY ggagacagtcgcaggcagagaagaaggcaccagggatgggatgctgccagtggtcagaaattgttccaagggcagggcaccactgtacctggtagccacg
atgcaaacagaggttaaatagggagtatgtgtggggaaaccataggaatagtatcgaacagataagactggcacagatgatgcagtgccccaaaagccaa
ataattgatgctagggaaacgtgagtttttaagagaggtgatgaaagcagtattttagggagatttatctcacaggagaatactgagagcccaatacaaa
taatgctctgataatccagaggtaagatgatgaaatgctatgactcaaagtatacacccaagaattgaaaggaagcagcaaagacaaCCTTTATTTATTT
GCGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
ATAAAATAAATAAATAAATAAATCCTTTATTTATTTtcttggtactaaaaataggattcaaggagaaagaaaaatcaatcataagttttctaacttaaaa
cgctgaaataatagtatctatagggagttgagaatgaaaattattttggaaggatagattggttcaatttcaggttcattaaatttgagataaagtgatg
atagtgtatacccaaattgagctgtcaagtcataaaatttttctaaatatccctcatctacacatttctaattaaattagaaatcttattcaaaacaacc
aagatcactaccattttatttcatggataaatgggaaaatattgtaagaattctcattattccatttccattaatatatttccaagcagctctccaaatt
catctatatcccttttattacac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 470 236 NA intergenic
0 chr13 33636966 33636967 1001726 0 + 1104685061014 GCCCCTTAATCACTGTTACTGC GAAGTGGGCATAAGCAAAACTC SINE Alu AluYb8 aaatcactaagacctgtgtgtagtgagtcttccaactgacatatctttcaaccagagaagccctcctttatccatgaataagcatcagttgctattctct
acatcatggattcctctccattaccaccttagccctgaaaacacttctatctactcctaatataagccacgtgaaaagctaagatttgttgctatttttc
attatgctgagactgatcacagaggcatactatggcaatcacagacactaacctggcggtaagtcagggcaatttcattacaagtgcacgcttgcatttt
atgccccttaatcactgttactgctctcccaagcagcacattctttcagcttggattttgacaatacgttctttgtcagaggaatgctgAAAGAGGGTGA
ACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA
GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT
TGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGGTGAaaggggctg
ctattgccagaacagttccctggcacctgaggcggaggtacttaaaaagccactgtgtgcatttacacttgctccattggtgcacacagccttactcaaa
agaataatgataatgcaggtaacagtcttatctggctcagcggttttaccttttcgtagcctccagatgtttagtggagttttgcttatgcccacttctt
cagaaaacttacctagttgtgttaaggtcaaaggtacaatgcaaaattccctgagacctgaagagcagctctatctgagatgactgagtagccaacttgc
tacgctgtgcctcttcttaaagcgtctgtgagccgggaatcacaattattgagaaaggatcataaattaaattaaatgac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 596 307 NA intergenic
0 chr13 38350726 38350727 1001727 0 + 1104685159415 NA NA SINE Alu AluY cttttactgcagcattgagaaggtgtttctatgcactggagctgatggctatgttcccaagtatagtccaatgaatgcagaatatggctgcttagccgac
tctccttcactcttatatagatttaaaattgtggtaagtgctttgacccaaaaaatgagctagatagatttttcaaagttcagcctccttgtcttatatt
taaaaCCTCAGCCTCCCAAGTAGCTGGGACTCCAGGCATGTGCCACGATGCTCGGCTAATTTTTTAAAATTTTTTGTAGAGATGGGGTCTCACTATGTTG
CCCAGGCTGGTCTTGAAATCCTGGCTTCAAGTGATCCTTCTACCTTGGCCTCCCAAAGTGCTGGGACTATAGTGTGGCCACTGTGCCCAGCCTTGTTTTT
CAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCCCCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAA
AAAAAAAAAAAAAAAAAAACCTCAGCCTCCCAAGTAGCTGGGACTCCAGGCATGTGCCACGATGCTCGGCTAATTTTTTAAAATTTTTTGTAGAGATGGG
GTCTCACTATGTTGCCCAGGCTGGTCTTGAAATCCTGGCTTCAAGTGATCCTTCTACCTTGGCCTCCCAAAGTGCTGGGACTATAGTGTGGCCACTGTGC
CCAGCCTTGTTTTTgggaagattgcttaagtcaggaagttcaatctatgatcatgctactgcactctagcctgggtgacagagaaggtccccgtctctta
aaaaaaatagaaaaaccaacaaaatgatcatttttagtaaaccaaatggtgacattttatagtaatttgtacttgcacaaaacaaatagagaaacatgct
gtcctggcaaaagccgtgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FREM2:NM:207361:22/24
0 chr13 20792780 20792781 1001728 0 - 1104685715456 NA NA SINE Alu AluYb8 aggggctgagggggcagaggacactggggacagttccgtctgtgttccccaggccacaacttgagtggacaatggggaagtccactgtgcaaaactgtaa
aaggcactcggagtagctactaccgcccactgcccgtgggggcctctggctgggggctagaggcgggtagggagctcttcctcgctgtccccgcagtttc
cacagcaatcctttggcgactgaagagtctctgcagcagtcccttgcaggtggctggcccttccagtccaggtctgggggaactgagccatccagcccaa
agacattcagctcctggaagcactcagtctccaccatcccgttctgccaggggatgggcacgctgcctgtggcaaacttctggtAGAAGTCTTGGTCGGT
TGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCG
GGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCG
CCACTGCAGTCCGCAGTCTGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTCTTGGTCGGTgcctccagct
ccacacccttgaccctagagaactgtttaatgtccagaatatccttgcagtaaatggcccgagggtcaggcttgaagggcggctccagcatgccggctcc
cacccgcttgaagttcagcttcttcaagagggggtgctccttcacttcgcgggcactgcccccacgacaccccaggcgttcagcggggtccttgcagagg
agctgtgagcaggcctgcggggaaaagcgctcggaatactcctcggggtcctccttcaccagccgctccacctcctcccgcttgatcttcttcttcctct
gctggaagggcgactggcctgcaatcatctcctacgggaggcagcctagcgcccaacagtcagagctgaaagtg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 21428362 21428363 1001729 0 + 1104685715659 NA NA SINE Alu AluYa5 tatcattatcagcattttgtcaaagccattcaataagtatctaggactttcctaacttttccacattttcctgtcttcttctgagccctccaaactgttc
caacctctgcctgctacccaattccaaagtcacttccacattttcgggtatcttttcaacagtgccccattctactggtaccaatttactgtattcgtct
gttttcatgctgctaataaagacatgcccaagactgggacatttacaaaagaaagaagtttaactggactcacagttttacatggctggggaggcctcac
aattacggtgacttgcaagaaggagcaagtcacatcttacgtggatggcagcaggcaaagagagcttgtgcatggaaatttccatttAAAAAACCATCAG
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAACCATCAGatcttgtgagacccattcactatcaccagaacagcatgagaaagacccacccatgattcaatcatctgccaccgggtccctctcac
aacacgtgaaaattatgggagctacaagataagatttggtggggacacagagccaaaccatatcacctatatatattcctcataacattcaccttatgag
tgtccatttttgtccattgatagcatcttttagcgttggggcacacttcacccttcagagacagtttggcttttttttttttttttttttttttttttta
agacaaggtcttgctctgttgcccaggctggagtgcagtggtgtgctcctggctcattgcagccttgacctctccaggttcaggtgatcctcccatctca
g Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 49071372 49071373 1001730 0 - 1104685511213 NA NA SINE Alu AluY atgtcccacctccagccctaaggcggtttttccctatctcagtagatagaacgtacaatcgggttttataccgagacattccattgcccagggacgggca
ggagacagatgccttcctcttgtctcaactgcaagaggcatgccttcctcttatactaatcctcctcagcacagaccctttacgggtgtcgggctggggg
acggtcaggtctttcccttcccacgaggccatatttcagactatcacatggggagaaaccttggacaatacctggctttcctaggcagaggtccctgtgg
ccttccgcagtgtttgtgtccctggatacttgagattagggagtggtgatgactcttaacgagcatgctgccttcaagcatctgtttAACAAAGCACATC
GGCCGGGCGCGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCAT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCCCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAACAAAGCACATCtgcaccgcccttaatccatttaaccctgagtttgacacagcacatgtttcagagagcacagggttgggagtaaggtcatagatt
aacagaatctcaaggcagaagaatttgtcttagtacagaacaaaatggagtctcctatgtctacttctttctacacagacacagtaacaatctgatctct
cttgcttttccccacaattaccaccctggcccctttcccctcacctcatctccctccattccaatcttggcttcatctggcactgcaaggggcttcaccc
acatgcttgtggatacttctcttccaaactctgtccacattccccacaaacagacaggccaccccatggctctaggtgtgtggagtctgctgttgaggag
aag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 68568765 68568766 1001731 0 - 1104685500867 TCTGGTGGATGCTAATAACTGG CTTGAGAGAATTGCTGTTGGTG SINE Alu AluYa5/8 taaggcaatgttataacggattctggcagaaagtcagtaattgctatgaggtgcttgattccttcctgctgattgtcactgaaaacaattgaaaatcatt
ttcttgcatatgttagtgctacaaactagctctttacttttgacaacactcagttccaaatcaatgactttttcaattattcttattccttcaattttta
attcttttctgcttgagagaattgctgttggtgtctcaattggtgctcagcattttcttaatgtaggtgagttatttggaagaatattttagagaaaatt
ctctttttgactatattatagcttcattgctgtgctaaatacgtgtacttgattaaaagaagaaaaatgcttgcacattctctctgtAAAAGAATGAATG
TGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGAC
TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGAATGcaaatactgactgtagtcacttaaaatatacaacacagtcacatcttaaaatg
tctgaaaagtacttcagtagataaatttgttcaacattgtttaataaatgatttcaccatttaacctatttttaaatttattgccagttattagcatcca
ccagaatttataggtggtttaaaacatttgggcaatggataacatttcttgaggaattctaagaggaatatcattgtgggttaacacttattgaagaaac
tgtatgtcaaaaactgtaacactatatcttatgaaattaaatcactgagtttatttcagtacccacatccatgttgttggacttactgtgggagaaaata
tgtgtgtgtgcacgcatgtgtgtgtatacaataa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 494 348 NA intergenic
0 chr13 56487027 56487028 1001732 0 - 1104685360442 NA NA SINE Alu AluY caaacctgtactttctgcacatgtatcttggaacttaaagtaaattttttaaaaaaagaaataattaataattacaattacaaaaatctggactatccaa
taggatatgtatttctgcattttacaattcagaaaattgaggttcaaggattaggtgatttttcataatttgaaatgaataaattaagataaaattaaga
caaagagccaagcttcctaaattctttttatttttactttttcctttattgcagtatgcagcattcatgtttaaaacagtgtttttactcatattattgt
ctctgtatgccctcctcttcattaagttttgaaggttgtgttagttattggtttctaggtaacaaattacataaacctaatagtcTATACGTGATTTTTT
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAATATACGTGATTTTTTtatctcacagtttttgtggattgaaagttcaggcttaactgagtgtgctctctggggtatcacaggttgcaaacaatttgtt
agctaagttgtagtctcatctgaacatagggaagaactcacttccaatttgacacagttttgttggcagaatttattgccttgtggttatagaactgatg
gtttcaacttcttgttgtcaatgggaggctacactcacttcctagagaccactctcatcttcttgccacacaagcctgccaacatgttcacaaacttctt
aggagccatctaagacagaggcaaataatatagtgtaaccataagagtgacatcccattacattatcctgccaatcctcatgaagaggggattacacaaa
gac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 45526996 45526997 1001733 0 - 1104685510248 NA NA SINE Alu AluYb8 aagatatttagtgagtaactcctatctacacacagtgggaggacagactgattttgcccttttgaagtttgaagggagatgggaaaagaggagcataaaa
taaacctgtaaccaggcatcagaaaactacagcctgaaggccaaatccaggtttttccattttttttttttttaatgattagaaaaaaacaaaaagaggc
caggtgctgtggctcatgcctgtaataccagcactttgggaggctgaggcaggaggatcacttgaggtcaggagttcgagaccagactggccaacatggt
gaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggcaggcgcctgtaatgccagctacttggttggctaatgcatAAGAATTACTTGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTACTTGAcctgggaggtgggggtggcaatgagctgagattgtgcaactgcactctagcctgggtga
cagagtgagactccatctcaaaaaaggtcgaaactgtatttatcatgaacactaaaatatgtacacattttagttaacatgcattaaactgtaacaagtc
ttctggcaattgtagctttcatgagatgcttcccaaactgtattagatagatgctaaaattataaattaaaattttgggtcagactttgccataaacctg
gactcaatttagcacccccccaaaaaaagtcagattattcaattaatgcggttggaaaacctaacaagttacctagaaaaaaattaattggattattaac
atgtctttcaccaaagtaaattccaggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CPB2:NM:001872:10/11
0 chr13 45545749 45545750 1001734 0 - 1104685510256 NA NA SINE Alu AluY tttggggtttctttgagcaggtttctggaaaagaacaaacagccaaaaatgccatatggattgactgtggaatccatgccagagaatggatctctcctgc
tttctgcttgtggttcataggccatgtaagtattcacattctcttaaccctatttctcaaaatggtgcccaagatcacctgtgtcagactcaactgggct
atttattaaaatgcattttcctaggtcacatcatgaagcttgggaatctacaattttcacaagtttcccaggtgacttttatgcattagtaagttgaaga
acatgacttcaagcatttaaatcacccaaaatatttttggtcttttctacatttctgcctggagctaaacagtggaaaatgattAAGAAATAGTACATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAGAAATAGTACATTGttataatatgtttactaagtagaggaaaggactgaaggagttatctaagttggggcccaattaatttatttctcttttggtttt
aattatccagacatcttttgccacctttgcccttggaaattgaacataaagcacaacattacagaggtgaaacagaatatgttttctcatatgtcataat
agggaattttcttcctgaagaagggttttgcatcaaaaaagccatatataagacaaactgtatgttggaaaagtaaaagatataacgactattaacctcc
ctgatgaatgaaaacagtaaaaattatgcttcaaatcctataaaatgggcatatatgttctctacactgatttctacaaagaatcatagccactggaaaa
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CPB2:NM:001872:6/11
0 chr13 57519068 57519069 1001735 0 - 1104685360176 NA NA SINE Alu AluYb9 tttatatttgctgtttcctgtgcataagcactttaagcaaatcattatttaatctttccaaaagctctattcaacaaatattctttatttgactactaga
caaggtactgtcctgggcactagggtgtgcaatgatggataaacaatcaaacaaaaaataataaataactcatatagtttatttgttacatcggaatgtg
attattcacattctccagagcaagaaacaacaggctgacagggattaagtgtgttccagggaattagtgactgaaaccatttgaatcaagatctatggtg
acttgaaagctcttgcaccttactacttcctcaccatgtaaatctagtgtaccatagaaattcaactaattttgattgattttatAAAATGAATAATATT
TCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAA
TTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGA
GATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAATGAATAATATTgtgttttt
aattttaaaacaaaaaatttatttttgtattatacagtcatttcagcctccttaaaggcagagactatgacttattaaatttggatcttcgagtcctgga
aaaaaagcctggtgcatagtaggagttcaataaatatttactgaatttttttttacctttgatgaaaccaaaagcttaaagaggtagagtgatttgcgca
aaattgtccaactagatgttgaccatcatattctatgaccttactatgtatatctttcattttcctaatctgctgttaacgcaatccctccttctttgtt
tcttgggttcctcagtcccctatttatgtccatgacccattaatttccacccctccacattcctaatactcagctct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 107517820 107517821 1001736 0 - 1104685247818 NA NA SINE Alu AluYb8 caatccacttgcctcggcctcccaaagtgctaggattataggcatgaaccactatgcccagcccagtattttgagtttcttccttgtctcgtaatgttat
ggcagagtcagattggaaagtaagtcacaatatataggattaaataaaacccatctgatgagaatttatggtttgtagggcatgactccccaggtcactc
agatagaaatctggacaagaaaaaaaaaatcagagattagtcctcagaggtatttgtgtgtatctcagtattgttatttaaagaaagtaatttagaatta
tgatagcacttcattatgtgtaatatgattcatattttcacatttcttattatcatcatttgaataaaaaattcaaatgtgatttattttAATAATTTTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTTCGGCCTGGGTGACAGGGCGAGACTCCATCTCAAAAAAAAAAA
AAAAAAAAAATAATTTTTatttgcttttcattagctaaggaaataacaaatatttgctatttgtttattggggcacatgaagtgaattatgaaactgatt
gcattctcttataattgacttccactcctctgacaccagtcttatctcccgtttactacaacactgaatttcctacacaatttatatatctatttttttt
ctttcctttacatatgacatgtactattaccctgctctctaggaagagccttattttcaaccaccatagaatacatgtaagaattatttccaaagacaat
atttgtgatattctcttattttcacattcattcacatgagaaagaaggaataactcttctagatatctttatctacccactctttcattgagtttatgag
ctaattag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 110409989 110409990 1001737 0 - 1104685246968 NA NA SINE Alu AluY tcgctgctccacagccctggggacaaagccgcgacacaaaggaaaataatctttttctgttctggccagagcaaaatacatgacaaaacatggacattag
ccactatgcttagcactcaatatcaaactggcaaagctcaagcttgcccccggttgggccccatcacAAAAGTGATGGGGCCCTGAAACCCCGTCTCTAC
TAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGA
GGCGGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGTCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAACAAAAAACAAAAAACAAAAAA
TTTTTTAAAAGTGATGGGGCCCTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTA
CTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGTCTGGGCGACAGAGTGAG
ACTCCGTCTCAAAAAAAACAAAAAACAAAAAACAAAAAAgacccatcacttttaatccaacccccaaccgggagtttcaacttgtggtctctgggcaaga
tggtcgccctgagtaatagaaaagataagaaaggaaaaggaaagagagagaaagcagtgcctgtggcagggtggggaaggtgaagagctcaaggaggcca
gagaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 77482672 77482673 1001738 0 - 1104685165777 NA NA SINE Alu AluYa5 ttctgtcctccttaactgcactgatctgtccagtacacacaatctctataatctcttttattgtcctaagcaatttagctttgactctcagctttgttct
attgtcctgagcaattcagctttgactttcagcttgcaaacctcaagtgaaaaaaataaagaaaatcagaagtaagatgtttctttccaccttaaaaagc
ataccatccattgtttcttaagagtgttgagggtttctgtctcagacctcatcaaagtcttcattcaaaacattttttttctttatagtatttagggaat
agggaaaagagggaggttccattgttaatttttaaaaaattctttttataatttttgcatatgtaatttatccgacctctgaattagcttttAAGATTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGATTTGtccactgagtgtaagttccttaaggaataatggtaatcatataagtcactactcatgatgttctagacactgaactaattcatt
tatgtaagacaaaggtcagcgaactacagaccacaggccatatgtgattcattgcctgtttgtgtatggcccacaagccaagatgacttttacattttta
aatacataatactttaaactaaaaagtgtttaaaaacaaatgaaagtttagaaagcatattctgaaaaggatcagctattataatgatatgaagatatgt
gccatacactgtaattttctatttttataaattttaaaacaagttatatcttgatgtgagcttgataaggatctctcctcctctctactgcttttttttc
ccaaatag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 78169602 78169603 1001739 0 + 1104685165991 NA NA SINE Alu AluYa5 tatttattatgacgagtctttcaattcataaacacagtctgtctgtctctttatatatttaatctccttggatttacattagcattttgtaattttcagc
atacagattgtgtatatgttttgctaaatttatacccaagtattttaatttcattggcatgattgtgtgaagggaaattttaaatgcagttagccttttc
ctatcccaccattgtattttatgtgtgttgggtggagggggtatacaacttgtattttagtttgtaggatgtcagattgagaggagacacatctagatgt
gatgaagaggactgggcatcttctagaattccagggcattgagacacatttaataactggaggaagttttggattgtctgtcttAGAAATGGGCATATTC
CGGCCGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAGAAATGGGCATATTCtacatatgtgatgacaggtgcacatggatctttcggtgtcgtgtccaaagagatgaagtataccagaaattatctcataa
tagtctgtgggtttttttttggcatagtaatacaatttttagtttacaaaatcacctaattagtgacttcattttccagcttctcttatattttggtgtg
gccatgtgatttagctctggtcaatgggataaaagtgaatgtgatatatggaattttggaactgtacccacaaagggaaggagtgtactcatcatattcc
ctcttccttttttccttctgcctgaaacatgaatgcagggttgagcactgtttgaggagaatgacgacaacactccaggatactgaaacaataagatgga
agga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 90959677 90959678 1001740 0 - 1104685252604 NA NA SINE Alu AluYb8 atccaggtaaactagatacctggtccaatgcccaatataaagcatatacaaagattataataaaatagatcatgactaatttttagtattcccatgtgac
taaaatggctttgaataaaaatgttactttagaaagagttaagaaatatgattagtaatagtttaatataaaactcttttgagcatttagtgttatatta
atattgtcctaatgtaacatgaaaaacaaggtctcaaaatgaaatattgctttcccagaattctaaaattaggttattaatcacatcaacttttcatgaa
tatctattatagcataactttttaaacagtaaaacttttcataagaatgcctatgcaaatatgactatctcactatttgatcctAACATATTCATATTTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAACATATTCATATTTTaagccttctttatgagcacttttaaagacctaattgaagtaacttcatagaatattttgagatagtctcacagtga
acccaagtttgtttgcaaaagtttttttttgtttgcaacagttatgtagtagtttgacctggtatgagctctgaggattgcatcctttatattttcaatt
taataataaaatattcaagaagtgctcactactatacctgcaattttggggcattagaataataaatttaagacttatagggaatattagtggtagcctt
atgctactcctgcttcttacaggaaagattccagtatcaactgtgaactggtattccagtctttgtctcaaccttcaaggctcaaaaagcctttataaca
ttttacca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GPC5:NM:004466:2/8
0 chr13 80271733 80271734 1001741 0 + 1104685166556 NA NA SINE Alu AluYb8 aaaaaccttgtagaaaaattatgttttgccttgttaagaaaaagctgacccaaatgtcagaacacagagacacagacttaagataaaaaatgactcaact
ttttctctgccctttgattaaatctataacgccatcaacattaccccaaatggatattttgagagttgattttgtgtaagaaatcgtggatgcaagacgg
aaacaactgccaaacagtaaggcaaaaaaatatgagtagagacaaaaaaacaaaacaaaacaaaacaaaacaaaacagaactgacaccatcttctgctcc
aagtaagattacaaatttcaaaaacctgaaaaaaaatgtgatgttaaaaaagcgaaggcaatcaattggatgacattaaaaatatagaatgaactNNNNN
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAGAATGAACTGAGAAANNNNNgtttaaaatacgtatgtgtagagggtgtatacttctggccatgatatagtaatgggtgctgtgtt
tgcattttcttttaaaagaataagagaaaaaaatatgatacactgatttttcagacttaggataacaagccaaaaaacgaataattgttgaagggaaata
attgggataggtaccccaacattttgctgaggatggttttcaggatgcaatacaggcagggaaaatcaagcaggcctgtctgttccttggaggtaaagat
cagaatttggagagatcaaactgatagaattttgggggcagcatagttggggcggtggggggaaacgagctacatcaacaaggcttcaaagatctccaga
aagtacctcttgaatttttggctacatagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr13 91311982 91311983 1001742 0 + 1104685252518 NA NA SINE Alu AluYa5 tactgtcatttatctatttctcccttcagttctgcttactttccttcatgaattatgaggctttattattaaatcagtgccccctttggcatattattgt
cctctcatgaattggttatttcataattatgagatgcccccattttctctgataatgcatccccttttccagtttacattgtattttgctgatacagcca
cacaagcttcctaatacttgttgtgtatatggtttatctttttgtataggtttacttttcacctatctgtgtctttatattgaatatatgtttctggtag
acaacattagttgggtcttcttttcttgtctaatatgacaatctctaccttacaattggataatttagttcataaatatgttaaatTAGCAACATGTTTT
TCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAA
AAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAG
CCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATAGCAACATGTTTTtttttaaaac
tgtacaatctgtttcttgtttctcttctcttatttttgtttaattgtgttttaagtactcattttaaattgcatagatgagttagttgcagagctttttt
actgagttatttgtcttacagtaattatcaatttatagttaactaatctaaattttacttggaggtttttttttacaacttcatatacaatgtaaaaaac
tgatgacagtaacatttcctttattccctctatgtcctttgtgattgttttagtataaatttttctatgtacatcataaaccccacaataaaatgatatc
tttttaaattttaatagtttcccttcaacgaaattgaacgataaaaaaagtattttctgttactcatatacttatc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GPC5:NM:004466:5/8
0 chr13 97532912 97532913 1001743 0 - 1104685250840 NA NA SINE Alu AluYa5 ttaactacagctaaatataataattcattttcatgaaatttttattttttagtgatttgtcttagttgttcaggctgctaaacagaatgtcatagaatgg
gtgacttataaacagcagaaatttatttctcacagttctgggggctgggaaatccaagatcaaggcgttcacagacaccttctagctgtgtcctcatatg
gtagaagggacaagggagctctctgggccctcttctataagggcacgagtcccattcatgaggctttgccgtcatgacccaatcagtccccaaagtcccc
atctcctaatactgccaccctgggaggaatccgggacgtgaatttgggagggacacaaatgttcaatctatattaggattGACAGTTTGCCATTAACCTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
GACAGTTTGCCATTAACCTTtaggagttttaggtaaaaagtgagggacaagaaaagagaaatattctgtgcattagactcacggatgtgatatgtgactg
ctcctgtcttattcttcacaccatgtgactttttaaaatctacgaaaagcctattattttttaaaaaaggatacataataccaaaaggtgttcaattata
aatattttgttcttacttaagtcacccacccgctaagaccaccctccctcaaggtagccactgatacttacatccttccagaaatgttctatgcatgtga
gtgtgtgtgtgtttgtgtgtgtgtgcatgcatgtgtgtttgtgtgtgtttgtgtgtgtttgtgtgtgtgcgtgtttgtgtgtgcgtgtgtgtgtgtgttt
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 46905844 46905845 1001744 0 - 1104685119960 NA NA SINE Alu AluYb8 agaaaattccaaaaacttatcataccctgaaacaagatggatgattgctcttgcaaagacaaagaatacaacttcctgtgaaattactcataagagttaa
tggattacttaatcccagtatattttaactgtttatcataaaataaagaataattaagatagctcagttatatttgcattactctgccaatgttaacagt
ggttggctaatgaactcagattttattcactactgtcagtcttttacttgatgacagatgattagtctatggaacacattattagttctaacaatgtaga
ttaaggtttctgctcattactttttattttcacatacaaattctatttttttgttgtatgcaaaactagtaggccaaagtcaaactaaaagtaaTTTCAT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGTTTTTTTCATatatctaacttttagtaaaacatagtatcaaacataatctttaaggtatttaaatctgcttggagataag
tactgttacgtgacttgaagttcatgtaatattttaagtgcttctaaagaaataataaattcacttgaaaaaggcaaataataataacaataataaaaac
tgtactcaatctgtactgatttataataaagagccagaagacaaaatttagtattatatactttaaaaatatagtacatattttttgtaacagacgaata
tgttatattgtcccttttattgagtgattagtagagcacttactgaactataacctcctggtaaaagtagccaggtgaagggcgaagaaaataatcaggt
aggcatcctcatttggcttttatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MDGA2:NM:001113498:1/17
0 chr14 50501846 50501847 1001745 0 - 1104685121083 NA NA SINE Alu AluYb8 gagggtggagagcccagcctgctgaggttatatgaaaatgctacaccattttatatcagggacttgagtatctgtgaatttcagtatctcagggaggtcc
tggaaccaatgcccccgcagacactgagggaccactgcagggaggccctgccaggcaggtgtgccagataggaatctttggctacaaaaacacccaacct
gactgtggctgacctaaaggcatagaaggaatatgcgagaaagacatggggcagctcagaaagatgggaacgagggcagctctggggatcaaggtagcag
gaactgatgaatatcgggtcttatcagagactgccaagggggcgcaaaagctccagctcatcctcattttattgtctcactgctcAAGATTTAATTCCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAGATTTAATTCCAGaagatggtgtctggttttgcttgtatcctgggtctacctcttagctgagggagggcaggacatcaccacttagaatt
ccagccactgaatccaatttgagtgctatttctagaaaagtagggatggaggcttggcagcaaaatgagcaaggacccctgcaccatgatgaagtatttg
ggcttattccaagtgtagcaggaagccactggtgggttttaagcaaagtgaagtgacaggttatatctacgtaatgttttaaataaatgaatgctgttta
gtctgggcctttaatttctgggatttttttttttttttctgaacaaaagtaaatgctttggaaatggcagaaagctgggagacatttacaatcgtagcag
agaataaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 50788750 50788751 1001746 0 + 1104685121138 NA NA SINE Alu AluYa5 tgtcttagagaaagtggttaccaatgggaaaatctataggccccggggcctgaaataacttgtcttttggtgttgaccatacaaactttttaaaagaata
ctgactctgatagaatcctttctgtgcaatatcgtggaatacgtaactggtgtacacaaagaggtaagtgttctcaaacaagatgggtaagtcagtgaat
aggcacaattttagaaactttaaaagagttgaacctaaggaaatgacagagataatactctacctcttttaggaagttacaagggaattcatttcttgga
aatgaaatttttaaaatgacttggctaattaatgtcaagctacttaagtttttctgtcctctattatgatccacagtaaaagtcacAAAGAAATCTTTCC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AGAAATCTTTCCctttaaatatctgttaatttggagggattgaaaggtataaagtaaagggttttttgaatgcctttccaaatcattcaaaaagaaggca
agcatggtctatgagccagagagatctgattgggcatcccaactctaccacttagtagcaaagcagtatgacagacattttttaccctctgagcgtgtaa
cctcctttgtgaaatgaaagtaattaaatttgcccctttggatcattatgacacttaggagataggtatgtaatgctcacattatcctagtaacatataa
gcagtaagcactatgtatatgattgtgtaatttatttttctttagtaatacaactgatattaatccagactttaaagtgatattgccatgccccttcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TMX1:NM:030755:7/8
0 chr14 19554152 19554153 1001747 0 - 1104685631081 NA NA SINE Alu AluYb8 ttagatcaaattttcctcagagatattatctgagaatatcagaaaagccattctacaacccacatataacacaataaatgagacttttataaaattacta
agcaacatacataagttgggtacatgatttgggagctcatctgtatttatacatcaccccccgcccatagtcgttatatccaaaacatgcgttttagctt
aaagtaatttttctcctttaaattttgtcattgaggaacaaaatttccttctcttggattcaggagaaagccacgttaatcatatttatatacatagata
catctacctatcaacatgcctttgctaggtttagttttgtgtttgtgtgtgtaaatggagagagaggaagaggaagagacactTAATAATGTACATTCAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGGG
AACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAATAATAATTAATAATGTACATTCAGttcccatgtcttacgtgttgacatt
atttttaagtgaagctttaatttcaatatttagtgcttaagaataattaattacccattgggcaatgatatcgacagagatggtgagaagatagaatccc
tgaaaaaatcttcatattctcaatcctcctaaggaattttggttcacctactgcacttgattgatccatgtttttatatggacaaaggccatggaaagaa
ggaaaaaaaaagttcctacaactctcacctatgcagaagtcttccagaatgtctaactgcccctcaggaatcactgaagtttgaaaaaggcaaatataca
tgcttgttagtatataacagtctatattttagagtatcacttgcaagttaaaaattat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA promoter:OR4K14:NM:001004712
0 chr14 31738998 31738999 1001748 0 + 1104685634630 NA NA SINE Alu AluYb9 tatgtctagatatatattttatagatatatctatatttatatctagatatatgtaaaatatatatttatatatctagatatatatctagctataaatatc
tagatatatatctagctataaatatatataatatgtatctagatataaatatataatctagatatatatatctagatatatatatctagattatatataa
atatataaatatatctgtataaaatataatatatatttgtatttatttctatctatctatctatctatatagatagatatagatatagctatatatagag
agagatagggaggctggggtctcactaagtttcccaggtggttttgaacacttggtctcaaggggtcttcccaccttggcctcaAAAACTCTGGGACCTC
CCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAG
CTACTGGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCG
ACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAACTCTGGGACCTCaccaggcctacgaccatttataaagatttttctcccctaatggatttat
ctcctgccaaccttcaaacatttctttttcttgtatgtgctaagtcttttcccacttttcagaatggaaagagtttataagtcgtcatctgggaatgcag
cctaactctgaaggcgcatatagcttgtagggacatcaagttcatgaccctgtaactctgatcgtccttctaactatagattcttctaaccatgtatcct
ttaataaactgattagttgtaaggtttttaagagagaacatgaaagaattttgatatacttctacaatcataaaattgaacatcaatttactgcttccta
gctttgaagtcacaaagcagaaatagcttattgga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 38230520 38230521 1001749 0 + 1104685636400 NA NA SINE Alu AluYa5 gaataagtgtttagtaaggtcccaagattcaagatcagtcagtaaaaatcaattgtatttctatattctaacaacaaaagccttagaatttaaaatttta
aaaagcaataccatctgtaataacatcaaaactatgaaatatttagaaataaatttaacaaaatatgtgcaagatctctacactgaaaatacagatgaga
gaaataaagacctaaataaatggagagagatagaatattcttctaatactttacattgttcagatgttattgttccccaaattgaccaatagattcaaaa
cagcaccaatcaaaattgaaatatacttttttggcagaaattgacaagctataaaagtgaatagccagaaagaaatgattttAAAAAAGATGAACTTAGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAGATGAACTTAGGagaccaacactacctgattacaacagctgcaataaagctatagtaatcaaggcagtgtggtactggcatgaggaaaaacacatag
gtcaaagaaacaaaatagagagctcagaaataggtttacatatatatacctaattagttttaaaagaaaaaggtgccaaggtaatacaacggaacaagaa
agtcttttcagcaaatagctacataaaaagaaaaatcaatctcaaccgttaccccataccatctataaaaattaactcaaaatgaattatacacctggat
ctaaaagtaaaaacctgcaaaatttacagaagaaaccctcaaacatcttcataaaggtagataaagattttttcaatgatgaaatggataaatcatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 91194822 91194823 1001750 0 + 1104685285770 NA NA SINE Alu AluYa5 aaatattttaaaaatggaactcacagacatagagagtagaataatggttaccagaggctgggaagggtagtggggcattatgtagggggagaatggcgat
ggttaatgggtacaaaaatatcattacatagaatgaataagatctagtatttgacagcacaacagagtgactacagtcaataataatttattatatattt
taaaataactggaagaatataatttgaatatttgtaacataaaggataaattcttgatgtgatggataccccatttaccccgatatgattattacacagt
gtatgcctgtatcaaaatatctcatgtatcccataaatttatacacttactatgtacccacaaaaattaagaataaaatatttttTCCCTTCCTTTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ATCCCTTCCTTTTTTTgagaaggaagaaactaacagcttgtaaaagataaaaagaatcaagttgagacaaagcacaccccaagataggaggtaaatttac
ttccatattctgcctcaaaaaatcttaataaattaaattcaacaaaacaagatctcaaagactcaataatagaaagacaaaataaaatgaaagtgcaggt
cgcaaacatacagaaataaattgagaatcatgtccctttatcactctagggtcctaggctggttagcaaaattcaactgagttggaaaggagtgggcaac
tatcattaaggtcaatcaatattaactgttttgagatttgctaaagggttcaaaattacagccagataggaagaataaattttagtgttctataccactg
g Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CATSPERB:NM:024764:15/27
0 chr14 62291445 62291446 1001751 0 + 1104685124156 NA NA SINE Alu AluYa5 gaaaataaaaaaaatagagccaggaatgctggctcatgcctataatcctagcactttgggaggctgaggtgggcagatcacttatggtcaggagttcacg
accagcccagtcaacatgcaaaatcccatctctactaaaaatacaaaaaaaaatagtcaagcatgggggtgtgtggctttagtaccagctgcttgggagg
ccaaggtgggaaaattgcttgaacccaggagacagaggttgcagtgagctgaaattgctccactgcgctccagcctgggtgacaaagcaagtctctgtct
aaaaataaaataaagtaaaataaaataaaataaaataaaatagaaatagctatacttacacaaaatagacttcaagacaaaaactataAAAGAGACAAAG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAGAGACAAAGaaggtttataagtgcctacatcaaaaaagaaggcaagcttcccataaacaacctaatgatgcatactgaagaactagaaaagcaagag
aaaacaaaaccaaaatttagtggatgaaaagaataataaacatcacagcagaaataaataaaattgaaacaaaacaattcaacaaatcaatgaaataaaa
agttggctatttatgatgataaacaaaattgacaaatataaaaaagagagaacacccaaataaataaaatcagagatgaaaaaggataaagtataaccaa
tacagcagaaattcaaagaatcattagaggctactgagaacaactacatatcaatagattggaaaacctagaagaaatagataaatgtctagacacatac
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KCNH5:NM:139318:10/11
0 chr14 62296052 62296053 1001752 0 - 1104685124158 NA NA SINE Alu AluY gagtggggatgcaggtggggagaaaagaaaagtgcctgacatgggcctatccccgccgttcaggtgaagctggcttcttcaaagtgtttgtaaaaaaagt
cacaaaatggatgtttgctctggtgaaaaaactatgaaagtagatttggatttggtaattttgcaaagctgaaaaatctctgttgttgggttcctgagtc
attctactcagcttgctcccttaaagggctcttttaaattttgaaccagcaattttatggaggttggtaacagtggtgatgatcagataatattgaaaga
gagagagaaagaaaggactgtaaaaattcaaaaattcaatcaggacaagtttgtcagcagaaaagacttaaacaaatgtaattattAAAAAATATACCCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCAAGACCATCCTGGCTAATATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACTGCCCTCCAGGCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAATATACCCTcgcctggagggtaaaccagctttatgatatcaaatggaatataaaggatttgaattttcagcttttgagcaaatgttataa
aacaaatgtgccaatatccttctgtaagcacaggcacctcagtattttccataatcaaatagccatgccccagaaataaattcataattgatgccacagg
atttcaaattatctaagcattctctcattttcttaaaggctcttcagaaaaaatatgcctaatttagaaaactgctactttagtctggatttcagacagt
gggactattcaatcctcaggtgtgcttcagcttgtcaaaaacacagctgactaattttgatgaaagaagaccagagatagatttaatatcttaccaaaat
aagtc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KCNH5:NM:139318:10/11
0 chr14 74569335 74569336 1001753 0 - 1104685290308 NA NA SINE Alu AluYa5 aattgaaagaatgtggtagttcactaattgaaagatgtgaacttatttatgtggtcagaggcatatttgccagatgttattaacaacccagaagtacgca
aggataggctgcttactctgacatccagcacaaagttctgcccctccatatgcccggtgatcttggcatgccttcccacactccatcaggcagagaccag
tggcagctcagaaggcccagtatgctgttttgattttaaaatttagtttgctttggaatatgcagtataatcaaatagatccaattttgaaaggcacaaa
agggaatataataaagtctcctttctatccttgtccccacccctcctagtttctctccccagagacaaccaatatctctggttttTGGAAAGATAGATTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATGGAAAGATAGATTTaagcaatatatgctttttaaatgtttttttttgctacccttttcctcatcatgaggcagtgtgttcaccaagtg
gtaaaataccaggaaagtctttactcctgtggccaatgagtaatgtcaaagagttaggcaaggacctaaggagtgcttcatggactagaatggcaatgat
attactactgttttcacttttccttataaaatgacggcctaagagttgggaaagatatagtaaaaacagtgttagaaaaacttacctctacaggccctgc
accatttgagaatagtactaattctctccagagactgggagaccctgctcaaggaaagggaagccttctggagccataagactgtgtggtcaacccacat
atgttcctggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MLH3:NM:001040108:7/13
0 chr14 59602157 59602158 1001754 0 + 1104685123387 NA NA SINE Alu AluY agacaaattgagcaagactccatctcaaaaaaaaatttttttttcatctaaatttctgagtagctggaattacaccaccacgccaggtGTGGTTCACGCC
TGTAATCCCAGAACTTTAGGCGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAAGGCAAAGCCCCATCCCTACTAAA
AATACAAAAATTAACTGGGAATGGTGGCGTACACCTGTAATCTCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCTTGAACCAGGGAGGCAGAGGTTGC
AGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAAACTGTAAAAGAGAGTAAACTATT
TGCCGGGCGCGGTGGTTCACGCCTGTAATCCCAGAACTTTAGGCGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACAA
GGCAAAGCCCCATCCCTACTAAAAATACAAAAATTAACTGGGAATGGTGGCGTACACCTGTAATCTCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCT
TGAACCAGGGAGGCAGAGGTTGCAGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAA
ACTGTAAAAGAGAGTAAACTATTttattcatcaaggtatttcacttagataaaatgtataatttatccagtaaagttattatgtctttgctcccagcaaa
tgtcttgattt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 42610817 42610818 1001755 0 - 1104685389491 NA NA SINE Alu AluYa5 tcggccttccaaagtgctaggattacaggtgtgagccacgcgcccggcccctttatagcttctttttaagaggaagtaccttaagcatcagactcaaaat
cttataaagatggactaggttaaggctgaagagcagattgttttaattggaaataggggcaggtcaaaactcctatttataaaagtgcaaaattatggag
tcattgcatgttttttctaatgatttcttgggaaaaagagtacatgtaaaaacaaattttggcagagcacagtggctcatgcctgtaatcccagaacttt
gggaggccaaggcaggcgggtggatcacttgaggtcaggagtttgagcccagcctggccaacatggtgaaaccctgtctctactaaaaataCCAATTTTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAACCAATT
TTTctgagcatcatggtgcacacctgtagtcccagctactagggaggctgaggcgggagaatcgctggaacccgggaggcagaggttgcagggagctgag
atcccaccactgcactccagcctggacaacagagcaagattacatctcaataattaaataaataaagtttttgatttatatgatttgattaagttaaatg
aaattttttattttaaaccaaaacgaaaaaccaaaaccctacccccatgagtcttaagacacgaaactgtctccattcaacttccatatatttttccata
cttacagggtaccataaaatcctacagtaccttcctattcctgtctggccagcggaaaaaacatgccttcctcagggagtgcctaaaatccaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 36505297 36505298 1001756 0 + 1104685378789 NA NA SINE Alu AluYb8 ggcagggagagggagagagaaagaggtaggagaaagcgagggaaaaggagagcaaaggagggagagaggagagagaggagaaagagaaagtgaagatgct
acactgctggctctgaagatgtaagaaggggccatgagccaaggaatgcaggcagcctatagaagctaaaaagacaaggaaatagattctcccctcaaag
cctccagaaggcagtagccccaataaccccttaactttagcctagtgagacttatttcagacttctgacctccagaactgtaaaataataaatctgaggg
ttttttaaaaatagcatttaggctgtagttcccaaatctggctggtcatcagaatcacctgagtagatctatcttaaaggctatacCATTTTTTTTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGGGACAGAGGGAGACTCCTTTTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACATTTTTTTTTTTTagtcatgttatttgcagcaacatggatggaactatagggaataagatacagaaagacaaatgtcatg
tgttctcacttatatgtgggagctaaagaagttgatctcatgaaggtagagaatagaatgactgatatcagaggctaggaagggtacataaagtgggtta
ggggagatgaagagagattggtcaatgggcacaaacatacagttagatagaagatatatgtccaggtgcggtggctcacgcctgtaatcccagcactttg
ggaggcccaggtgggtggatcgcgaagtcaggagtttgagaccagcctgaccaatgtggtgaaaccccgtctctactacaaatacaaaaattagccggat
gcggtggcacgtgcctgta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 43357216 43357476 1001757 0 - 1104685389322 NA NA SINE Alu AluYa5 ccttacagcagtgtcactgtctttacctataaggtgggtctcactatctttattttatagatgaggatgccaaggcacagagaagttaaggaacttgtcc
aaaatcaccttagtgataactggcagagcttgaatcagaattcaagtaatctggcgtcatgtccaataccactaaccattgcattctgctgcctctcaga
aataaaccaggcatagagtaaaattcatctgtagttcaagaaacaatttattgaagcttcctttttctgtcaagtttggaaaacgggagagaagatagga
atcgagactgagaagacgaccaagtggttctgagctgagagaactgggaaattgaaggacgtagattagctaagggaagatacaagtacctgaatNNNNN
TAAAAATTTTTTTTATTGAGGTGAAATTCACATAACATAAACAGCCATTTTAAAGTGAACAATTCAGTGACATAATATTCACAATGTTGCACAACCACCA
CCTCTATCTAGTTCCAAAACATTCCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGA
GATCGAGACCATCCCGGCTAAAACGGCGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAANNNNNattcccatcaccccaaaggaaaaccccaaactcgttaaggagtcactctctaatccctccttccccag
gccctggcaaccaccatctcccttctgtctctatggatttatatattctgaatatttcatctaaatggaatcatgcaataataagacttttgtgtctagc
ttctttcgtttagcatgttttcggggtgcctctacatagcataaatcagtacttctttttttaatgggtgaataaaattccattgtgtgtatgtaacaca
atttatccattgatggacatttagactgtttccaatttttggctattttgaatagtgctactgtgaacatgcatgtacatgtacttgtttgagaacttag
ttttgattcttttgaatgtgtatgtag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 43913299 43913300 1001758 0 + 1104685389189 NA NA SINE Alu AluYa8 ttgaatggctatatgaactcaagggaacaagggataaactattaagactagagagaactctgcccctagaattaattctttgggtttttgattgaatcaa
tttaccagaaggaagcatcacatgtaaacagatcaggagaaggttgctcagtaaaccgagcaaggaaaattggacattattaagctgtgtttctcaatga
ggcatttggagaatcgctttgtgaacaatagatgttagtctacatcaaactacagcaaaccatgttatatgttctgaatctatcttcctgccagttttgt
atgtcccctgggctaagaatggtgtttagatttttaaatcattgaaaaaaaatcaaaagaagaataatatttcatgagatgtGGATTTTGCATAATTTTC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAACTACAAAAAATAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGGGATTTTGCATAATTTTCaatttcaatgtccataaaaaggttttattagaacatagccacactctttcatttccgtattgtctgtggct
gttttgtgttataatggtagaactgagtagttaaaaaagaaacctaataaaccgcaaaggttaaaatgtttaccctctggccctttatagaactggttag
ccaacacttggtctgtatgatagtgttgcacaaggaaaaagttaagaatctctgctctcggctgggcacaggcctgtaatcccagcactttgggaagccg
aggtgggtggatcacctgaggtcaggagaccagcctggccaacatgggaaaaccccatctctactaaaaatacgaaaatgagccaggcgtgatggtgcat
gcctgtaatcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 38502201 38502202 1001759 0 - 1104685378311 NA NA SINE Alu AluYa5 ggctgcagtaagctgagatcacgccactgcactgggtgacagaatgagatcctgtctcaaaaataaataaataaacaaacaaataaaaatcctggcctag
ctgggcgtggtggctcatgcctgtaatcccagcactttgggaggctgaggccggtgGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCG
GCCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACGGAGTCTCACTTTGTCATCTAGGCTGGAGTGCAGTGGCGCGATCCCAGCTCACTGCA
ACCTCCACATCTAGGGTTCAAGCGATTCTCGTGCCTTAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTATTTTT
AAAAATACAAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTATTTGGGAGGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGC
GCCCGGCCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGACGGAGTCTCACTTTGTCATCTAGGCTGGAGTGCAGTGGCGCGATCCCAGCTCA
CTGCAACCTCCACATCTAGGGTTCAAGCGATTCTCGTGCCTTAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTA
TTTTTtaaaaatacaaaaaattagccgggcatggtggcgggcgcttgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggagg
cggagcttgcagtgagccaagattgcgccactgcactccagcttgggcgacagagcgagac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 38887625 38887626 1001760 0 - 1104685378124 NA NA SINE Alu AluYg6 gagctcagatttgaacgctgactccaaaatccaggttggtgaatgctgcacggtcctgccttcctgcgtgacactaatttactccatctagttcccatca
tctcctggtcagaatccctggccacaactgaggcagagggaacctgcagtttaccagaggaatctggcaggtctgtgatagggacaggacagtcagcctt
caccatggtgccccggaagcaggaggaagtgtggtaatctaactccagcgacctggagaagggcaggctgcgggatggggaagatttcagagcagaggga
gtaacgggcttggtgtgatggacaccgcgcttcggaggagcagggtggagagaagaaaaccgccagatgctacactgggccgacagCAAAGCTACTCTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCATG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AATTCAAAGCTACTCTTTcaaaaacgacggcagcgcgctttacagtttatagggaactctcacctaaagcacttcagtggaccctcacataaaccctgaa
agcgagagaatgttagccccattttacagaaatggaaactgaggatcaatgacttcatcaaaaccacacagctggaaaggagccgtaagaccaagtcttt
ggacgttaagtcccgcgcttttccctcctctcctccctggccctgcagccctcggggagggaagactcgcctccttcttgaagagggtgaacttgacagc
gcagccgtagcacctactctccatggtggctcccagcaccgcagggtctgcagagctgagatcacgccggccaagtcctgggccccttggaccctcaccc
cagc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA promoter:DNAJC17:NM:018163
0 chr14 105859905 105859906 1001761 0 + 1104685757469 NA NA SINE Alu AluYa5 agtccaccttccaaactctttatatatatatagtaaataaactttatgtttctcagagatgacactgtaaacagtcacagatttgcatacaatacaatta
tgtattggctatttacaatttacagtagtggttcttcctctgagaaatataagtacaaaagctaagtaaacaatgaggtactgccatttgggatttatta
tgtgtcatagcttaaagaactggcctttagcaaatattaaacaaatcaacctgaataaaatagtcaattaaatgatttatttttttctaatttattagaa
aaaattccaccaggtttcacctcaaaatgtattgcatacgtctaaaaacaaacttaaaaataaataggaaaggtaagcagttcttcaAAAGAATGGAAGA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATAAAGAATGGAAGAaaggaatagaatgaaagctcataaaccaggttaagtcattctgaatatcttttaaacaacataaaattcttcc
caacagaaaagtgaagaaaaaactatcaccatttctccactgataaaatctattttaaaggtagtctgccatatatcttctaaactctttctatgaggct
accatgatagtattaccagtaatagacaaaggcaccacaataaaagaaaactacagaccaatatcattagtagacatgaattaatccccaacaatagtaa
actaagctccaaagtgttttagaagacatacaccatgaccaactcaaatttcttcctgagatgcatacttgattcaacattctcaaatcaaccaatttgg
tacaccacattaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr14 97564144 97564145 1001762 0 - 1104685482894 NA NA SINE Alu AluYb8 atagggaattgttggaatgttatatcaagtatcacactaactatgtgcaattgagtggaagtgactaggcctgagtcctttttcctattcataccatggg
tatcgcttcattaatcaaagcttagcatcagtgtaaggagggcggatgtgattgcaaagcctcattatgtggctgactcagacatacaacactaagaatc
aattcatgacggccacgagttttccgatttttcaccatttctggggacttagaaatagattgtgaacaggcagaaacctctccctgtgctatgagtttgg
gtggtgtcatttcactggacaggctgggtgtggcaaagccagtggattccaaatgttccaagtgttccttttcagttcctacgCCAACTCAAAGACAGTT
GCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
ACAAAACAAAACAACCAACTCAAAGACAGTTatggttttatgatatgggtttccccagatggagaccccatgacaaggattgataggctagtagtatcct
aaaaagatgatctctggtgatgctgcagaggggaagaggtgagggcaagaaccagtggtgtatcaagccgacttccactgtagtcaactggagcttaccg
cattgggaactctagaaatcagtataaagagaccctcagaatcaccctgatggagcagtaaggaagctagggtgtttatctgctgcttctcctttcattg
ttggctgagggctactatcagaggtcttcattctcaggcactccctgctgaccctgcatgtgggcagaatcgtctcccatggcagagcagagggtggcaa
gaaaagcagtgtta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 20320439 20320440 1001763 0 + 1104685404886 NA NA SINE Alu AluYb8 ctacagtgatcaaaacaatgtagtatcgacaaaatgagacacacagaatgaggaaacaaactagagttcagaaatatagtcaattagtttacgataaagg
tgcaaaggcaacattggaaaaaggataatcatatcaccaaatgatgctggaacaactgaatatccgcatgcaaaaatgttaacttacactcattcctcac
tccatatgcaaaaattaacccaaaatgtattatacaactgaatatcagtaaacttcatcaaaattaaaatttctcctctgtgaaggacactgtaagaaaa
gacaagccacatactcagagaaaatatttgtacccagaatatataaagaactctcaaaactcaaaattaagaaaaaaaattttaatgaacTAAATATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAATAAATATTTTacagacatttcaccaaaaaaagtatctgtcaaataaataaatgcaaggatgctcaatatcataatcattacagtagtgca
aattaaaatcatactgactataactatgaacttattagaatgactagcatgaaaaatggtgagtatgtgaagcaattgaagtttttcatacattgctagt
ggaaatgcagaaatggcacaggaatcctggaaaacagtttggcagtttcattaaaatgttcaatacatacctatcatatatgcctcaaccatcctacttc
taagtatcctaatgaaataaaaacttaagttcacagagaatcttgtacacaaaaattgatagcaatatttagttataatacagattgagtatcccaaatc
caaaaatctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 25848573 25848574 1001764 0 - 1104685444806 NA NA SINE Alu AluY atcaaaactaagactacagcaaacatcgtgttcaattctttgtgttaccttatgctttaatttctcttgggtaaatacttgaaagtggaatggtgggttc
atattggtaggtgtatggatcatgtttttaaaaactgccacgctgttttccggaatggttgaaccattttacactcccaccagcagtgcttgaaagttcc
tgttccttcatctccttgtcaacatttactttagtcagtgtttttgattttacacattctaaggtagatagtgaaatgtcattgtggttttactccacgt
ttccctaatggctagtgatatttgaccatcttttcatgtaatcatttgtcaatcttatgtcttctttgttgaagtgtctgttTCAAATGGGAAATATTTT
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAA
AAAAAAATCAAATGGGAAATATTTTattgtgttgtttacttgttgaatttgagaattaaaaatttatatatatatattctagatattagtcttttatcag
atagatgatttggaaatattttctcccagtttgtggcatttctctactttaacttaacagtgccctttgaaaaacaggaattcataattttgataaagtc
caattaatatgatttttttcttttcatatattatgtttttactgttatgtctaagaaaacctttaactcagggtcagagattttttcctatattttcttc
cagaagttttatagttgtgttttacattcagacctataatccatttgtattaaatttcgtatatgattagtgagcagatcaaagtaaaagttcttttgca
tgtggat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:OCA2:NM:000275:18/24
0 chr15 68195685 68195686 1001765 0 + 1104685381979 NA NA SINE Alu AluYa5 aaggctgtatgattccagctagatgacattctgggaaaggcaaaactatggacacaggaaaaggatcagaggctgtcaagggttaaagggaagggaggga
tgaataggtggaccactggagagtttcaggacagagcaactactttgtgtgacactttatacatttgtcaaaatccaaagaatgtacaatatcaagagtg
aaccctaatgtaaactgtggacttcacctaatcatgtatcactattggttcatcaattatagtaaatgtactatgctaatgcaagatgttagtaacgggg
gaaactgggggtgaagtgaaagggtgttggggaattctactttctgcttgatttttctgtaaacctaaaactgattttttttaaagtcctttTTTTTTTT
AGAGCGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGC
TAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAATTTTTTTTagcgtcatgaagtgtaatcacggagaaatgcataggtgttatgggagcaatctggggtagggggtggggagggcttgggagcatgg
gggtcactaatgaagtcaagacccttgtatgtaaagttagacagacaaagtttcaagttccacctctgccacttatccaccatgtagccttagccaagtt
acttaacacctcttaaacctcagcttactcctctgtaaaatggggctaatgacgcctgccaccaaattattatgtgatttaaataaaatgcaaataaagt
acttggcactgccagtgatgagagtcagtgcttggcgaaagagagctccttttcatgccatggtgggtgaggaggctggctcaggtggagagcaggagga
gaaagc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 58444552 58444553 1001766 0 - 1104685385223 NA NA SINE Alu AluYa5 actgtttctttcattaaacaaagttattaatcagtcaggagagagacttttcacattctgaatttacaaactgtgctttcttaagttaaatggcatgtta
ggagtatttctgatatgaaattggaaacttgcagacaccagaaggcattgcttatctttgtaaatacacatgttccaattaaaataggtactaaaatatt
ttggtggcacctcaaaactcccaatttagatttaatttagattaaaacacttactctttttaataaagttataaaattaattattaaaattgcctattga
agattaaaggcagtggaacgtttattttccttacaaaacaattttgtcttcaataagtgtgattgtgttaatcaattatgctatCGGCAGTTGTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AACGGCAGTTGTATTTTTtattaaatctgactcatttgtcatgacagtttttataattatagaaattatacctagctgcttatatagccataatcctgca
ataagtataaataattatctctattaattcagtttgcagttactctctattaaatcccgagttaaatggcaatttggggaccttcatttaaaatcctact
aaatctctgttgttccatctgactgccaaagccccacatatgcacctcctactgttgattccagaaaccaatttatgaataaaatagtttttaaaccaca
agtatttaaaaggtccatttaagcttgaggtttgaggctctcaagaaaaaaggaaagagagtgtacacattgggtagaggatgctgacgaaagagataga
ac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ANXA2:NM:001002857:4/14
0 chr15 59003837 59003838 1001767 0 + 1104685385055 NA NA SINE Alu AluY ggcagagctacgatgactgaccatgatcatgtgtgagcacggggcagtgtgttttaaggggtgagcactggcagaggtgggtccagaaagggccagccca
ctgaaaacttcccaagtgggtgaaactcaccttggcacttgctctcctctctcctgccctctatcccataccccatgtgtagcattccattcaagaaaag
aactctgactttcagcttgttgacaacttatctcctgaaggtgttagctgacaacttttctgaggcagaagatgtgaccaatataggtgctgggagaacg
gaaggaaggggttgagttacatttattcagtactttttcactcatttaaaactaagcacacaactgagaggagtactcttctacttttAGAACATTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGACACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAACATTTCTTattgtatcactgccactaatatacgcttatagtctaaaaatatagaaacagatttgaacaaagaagaaaactaaagtt
acacatactatagtcctttaaaattttagagccttctagatcttttcatatatttataagtgaatatatttcttacgtgcctgtaatcatacttctgctc
atccgatttaatgtaattctattgtatctgtaatggaatagaaattcttgtccttggataagtcactggccctttctatcctcagattcctcattaatca
gtaaagcacgaatacacaggaaaattaagtcgtgaagcactaaaccacagggcggtgcgtggaggcagccaggccatgtggtggaaatactgtgaactat
aacaaccata Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RORA:NM:134261:1/11
0 chr15 54620966 54621051 1001768 0 + 1104685386441 NA NA SINE Alu AluY ctaagaaaaattcttctgccttgggatgctgttaatctataaccttacccccagccccgtgctctctgaaacatgtgctgtgtcaactcagggttaaatg
gaataagggcggtgcaagatgtgctttgtcaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggac
acaaacattgcggaaggccgcagggacctctgcctaggaaaaccagagacctttgttcatgtgtttatctgctgactttctctccactattatcctatga
ccctgccacatcccccactctaagaaacacccaagaatgataaattttaaatatttatttttcctcttttaaaaaagatcaaaaatgttgactctNNNNN
GGACTTTGGTTTTTATCAAAGGGAAACTTTGGAAGTGTTTATTTCTTGAAATCACTATTTGGATGTTTTACAGCTACCTCAAATCTAATATGTTCCATAC
TACTATTTTGATCTTTCCCCACAATATTTTTGTCTCTATTCTCCCTACAGCTTCTTTTCTTTCCAGTAGATCACTCAAGCCCAAACCTCGTTGTTCTCCC
TGATATTTCCCTTTCCCCTTTCAATGCATCATCTTCCACACTTAATTTGCTACCAAGTTCTCTTCGTGGATTCATGTTCAAAATAACCTCAATCCTGGAC
ACTTCTCATTAGCTTCCACTGTCATATCTNNNNNNNNNNNNNNNNNNNNTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAAAGAA
CTCAAACAAATTTACAAGAAAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAA
AAAACACATTAAAAAGTGCTCATCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGA
AACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGACCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAANNNNNtgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaa
aaagtcaggaaacaacaggtgctggagaggatgtggagaaacaggaacacttttacactgttggtgggactataaactagttaaaccattgtggaagtca
gtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctata
aagacacatgcacacgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaat
gtggcacac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 98716503 98716504 1001769 0 + 1104685149292 NA NA SINE Alu AluYa5 aaaattagaaatcagctccaaaaggaaccatcaaaaccaggcaaatacatggaaattaaataacctgctcctgaatgattgttgggtcaacaatgaaatc
aagatggaaatttaaaaattttttgaactgaatgataatagttgcacaacctatcaaaatttctgggatacagcaaaagcagtgctaagaagaaagttca
caacattaaatgcttatataaaaaagtctgaaagagcacaaatagacaatctatggtcacacctcatggaactggagaaacaagaacgatccaaaaccaa
acccagcagaagaaaagaaataatgacaatcagagcagaactaaatgaaattaaaaccaaaaaaatacaaaagataattgaaacaaaaagccggtNNNNN
GGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGG
GCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGC
CACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNataaataaaattgatagaccagtagtga
gattaaccaagaaaagaagagagaagatccaaataagcttaattagaaacaaaatgttaaatattactactgatactacagaaatacaaaagattactca
aggctactatgaatgcccacacacataaactaaaaaacccagaggacatggataaattcctggaaatatacaaccctcctagattaaaccaggaagatat
agaaaccctgaacagaccaataacaagcagcgagattgaaatagtaataaaaaaatgccaacaacaaaaaagtccaggaccagacagattcacagctgaa
ttctatcagacattcaaagaagaactgatgccaatcctgttgacactattccacaggggagagagag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 93928784 93928785 1001770 0 + 1104685311463 NA NA SINE Alu AluYa5 tatcagggggctgcttaaagtaccactgccccagtaatttgcacaaatgcaaatttgttcagaatgattctgcatgggaaggaaataaacatttgctgtg
ttgagtcactaaaattctgaggttgtttacatagtgcactattgccttttcctggctaatatatggacctagtcataccttttacacatattaaaaagtc
aagtctcttcctttcacagctaagcataatcagcaaaagatatcctaatacttacctagttcatcagcctttaatggatgttaatccaactttccaaggt
catatatatttactagaaacagagaataaaaaataatttagctagtcctaatccaaagctctttgtatagcatctagtctgtattttTCAATTTCATCTT
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCTACTAAAAATACAAAAAATT
AGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGA
TCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAATTTCATCTTatagttgctgtt
tccatccttgggtaatcttatcccttccattattttaaactgctcttctatgtagaagacaacagaattatcacctcgaaggatttctccttaaattcct
caaagtatctcacacttaaccaccgaaacaacatcacactcactttccaggtgccatgatttatgcatcacttgactctgaacaatggcaaacatatttc
tttgtagtaggactcaataagtgtttcaatttaattgaataaaaaattaatttctattttttcaccttgattcatttgcactgcatctttctaatcactg
gaattaagaacctcaaagtcatcttttatttctttttcttcctcaacactaaaggccaaatggctgccaagacct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 90374058 90374059 1001771 0 - 1104685527938 NA NA SINE Alu AluY acgtagcttttgaaaaccaactaaccctttggggcattttgtgggataaaacacacagaaagaatcaacaggaggatcgcattcaattttaagccaaact
ttgctatgctatggtaggaacgtgggcagagcccgtgttcaagataaatgcccaatcccctttgggactcctatcaccaactgttacgaaaatgtagccg
aggacattttattagagtaataatgcaacggttgaagccagactgagccggcaggctgcaattcttagcagctccgaggtaattgacctgtggccttttg
gttcacagactcttcacctgagccaagaaggtgcctgattgaatcatagatcttttatctctcataacatgagacggaagagttctattAAAAATGTATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAATGTATGagccaagtgagcaggcctcagctgcactgggagcccagatcctggggccagaggccattcacctttccttttgacaaaatcttatgaaata
attcatttacacagtgtcagcgcgactacatatatgtgtttgggaaaaaaaaaatacaaggaggggaaaaaaaacagtcaaaaatgtactttttccctgg
gttgtaggaaaatgattcttattttcctgcttagcctttattgtgtttccaaattttctacagagaatatgtatttctttatgagaaaacaaacattttt
caaaaacaaatgttcacatgagtctttgcccaggcactgactacgtttaagtaggtaaaagatgcggaacggagagtttatatatggacacctaccaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SLCO3A1:NM:013272:2/10
0 chr15 95571239 95571240 1001772 0 + 1104685311038 NA NA SINE Alu AluYa5 agaataataaaagaaaagaaaaaaatgaagaaaatcaattaactcagaaattggtttcttaaaatttcaagaaaattgatcatcctttagctaaactaac
agaaaaaagaaagaagacataacttatcaaaactaggaatgaaaaaatggatatcatcattaactctaacaaatgaatatgattataagggaatatgatg
aacatttcttcatattttatattttgatatgtcagaaaattaggagagataaaatggcacgtgccttaagagacgcaaattaccaaaattgacttatgaa
gaaatagaacatttgaatatactgataacaagcatagaaagtatgtaataacaaatatccctctctcccaaaaatttcaggctcACCAAAGAAATCTTCT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAACCAAAGAAATCTTCTaatacaataaaatatttaaacaaaaccaatcttttacaagctctttcagatgatagaggtagagaaaacctgt
cccaactcattctaaggactcacgattactctgaaactgaggcctgatgaagacaccacaataaaataaaactgcagaccaggaacccttataaacagaa
acacaggtatcttttaaaaaaattagtgaatgaaatcgagcaacatattaaaaaagcatcatatatcatgacaagtgaggtttactctaggaatcaaagc
ttagtttagcatccaaaaaaattaatgtaatgtaccatattgatagaataacaaacaaaaatagtatccttttaatagattaaggaagcatattacaaag
tttaacacaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr15 98160843 98160844 1001773 0 + 1104685149446 ACTGCCACCACAGACTCAGTT TCACCAGAAGATAGACATCCTGA SINE Alu AluYa5 gctggtcttgaactcctggcctcaagcaatcctcctgccttggcctcccaaagtgccaggattacaggcatgagccaccatgctgggtctatatatacat
tttcttttccatgttatatattctgtatgcatccttctggaatttgtttttctcacaatattatattgctaaagttcttattgttgtttattgctggcgt
tcattctttttgactgcttgtgaaatcaccagaagatagacatcctgagctctcttaagaactgctgctgggagtatacactggtatgaccactttggaa
aacagtttggctccatctcataaggttcaatattcacactcctcccagcccagtaattctactctacatggaagagaaattcttgcctatatCCTGTTTT
GGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAACCTGTTTTgatgtggacaaggaatgttcctaacagctctgttcaaaatagcaaaaacctattgcccatcaactggagagtaggtgactaaattgtgc
tttttattccctttgatttcctgtagtcttacgatgcaagtggctttcccatggctatcttggggagggggagactcttggcaactgagtctgtggtggc
agtcctgcttagccctagggcaatcggtgctgaccaaaacaagagtaaacagaacaaggtgccccattgagccaatgccttgagtccctggaggtacagt
cttgtatctgtaggaaatagccatcatacaaatcagtcttttcaaatgctctgtcactgggctgagtccaaaggacattctcctttaaaacattataaag
ttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 678 368 NA intron:C15orf51:NR:003260:2/5
0 chr16 51741170 51741171 1001774 0 + 1104685694776 NA NA SINE Alu AluY gtctccgactattgtagaactttctacaactatattgtagaattatttgtttttcccatcaattctgtgtatttttacttcataaattttgtgggtctgt
taggtgcatacatgtttataattggtatatcatattggtagattgagtctctttcatcagtgtgtaatatccttctttgtctcttgtaacctttctctct
ctgtctctcgtacccagccatttttttttttttcaggctaaagtgcagtggcacaatcatagttcactgtaacctccaactcctgggctcaggagatcct
ccagcctcagcctcccagttagctaggactataggtgtgcaccatcacactggctaatttaaaaatatatatatatatattttgAGAAATGGGGTCTTGC
CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATGGCGT
GAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGAAATGGGGTCTTGCtgtgtgtcccaggcaggtcttgaactcctggcctcaagcagtactgttacctcagcctcccaaagtgctgggattgtggcag
gtatgagtcaccgtgcaaggccctcttgtaacctttttttacttacagtattttgtttgatactaatatcccagctctcttttggttactatttctgtgg
aatatattttttcatttcttgttttttatcctcctgtgactttgtatttagagggaacctcttgtaaacagtatataagatggattatgtttttattttc
atttttatccattctgctaatcttttccttttaagtagaaaatttcattcatttacatttaaagtaattattgataaagaaaacatacttctgttatttt
gc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CHD9:NM:025134:1/39
0 chr16 58598669 58598670 1001775 0 - 1104685220047 NA NA SINE Alu AluYa5 aatatgacttgaagaaaatacacacacacacacacacataccagttcaaggttatttgataaatttgaatgtatttgtctaattatatatttagggaaaa
atgaatctatgtgttttacttgaaaccatacaaaaatcatttgtgaattcagaaaaaaagtaaaaactctgtgaatacatattttttagttgggaggaaa
ggaggctgatgaacgcaaatcactttggctcctagagtcagacaacctgtgttccaaacatgtcttcatcatttattcaccatgtgacattgctcagcct
cccttgaagagttgctctgaaaattgaagttaatatgtaacaacactaaactcagccttgtccatactgtaggaactgtgtgattGAAAACTTTTCTTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGAAAAAA
AAGGAAAACTTTTCTTCCagaaatttaattttattgtagatttatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagag
agggagagagagaacatgccaccatttgttgctcattttctcaaagattttttcaaagtatataggtcataattatattatctttcctagatgaaatcta
attgaggcattaagtgctcatctgtctctgaaagaaaatgttgtttcctggtgatttcacttgatattttagctgtgtaagatgggaagcaggataagaa
aaagaaggatgaaggtaagttagccgggtgtggtgacacatacctgttagtcccacctacttgggaggctgaggtgagaggatcacttgagcccagaaat
tcg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 23772801 23772802 1001776 0 - 1104685110006 NA NA SINE Alu AluYa5 actttaagccactaagccttgaggttatgtgctatccagcaatagataattgatttgttgggtgtccagtcaaatatctggaagtagaaccaacaaagga
ttcttctatataacaagtcagcttagaagagaactaacccggcctcaaagagatctgcttgggatgtccacaggtgatatggtttggctgtgtccccacc
caaatctcatcttgaattgtagctctcataatccccatgtgtcatgagaaggacctggcggaaggtaatggaatcatgggggtgggttttctaatgctgt
tctcgtgatagtgaataagtctcacgagatctgatggttttataaagggcagttcccctgtgcacgctctcttgcctgctgccatgtAAGAAGTGCCTTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAGTGCCTTGccttcctttgccttctgccatgattgtgaggcctccccagccatgctgaattgtgagtcaattaaacct
ctttcctttataaattacccagtctcagttatgcctttattagcagcgtgagaatggattaatacaacaggcaaccagagaggcaagaattctgactgat
tgaaaaactagaaagtctgacaagagccagattgttctaataactaaaaacaagaaaagtgcttctttatttcacttttaggaacacaaatagaactcac
tctttccctgctatgtttgataagataaagacgtccagagttttgcatcttagttttaccagtcaagtgagagataaaactagatacatcaccgcaaaga
aagacaaaggaaattatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PRKCB:NM:212535:2/17
0 chr16 87809200 87809201 1001777 0 + 1104685078108 NA NA SINE Alu AluY tataccacatataaaaattaattcaaaatgaatcaaaaacctaaatgtaagcgctaatgtataaaactcttagaagaaaacatagagaaaaaacttcatg
gcactggaattggaaatgatttcttggttatgaaatcacccacacaggcaactgaagaaaactagatgaattggactacatcaatattacaaattttgtg
catccaaggacaatcatgagagtgaaaaggaaacccacagaatgggaggaaatatttgcaaatcatgtgtttggttaaggattaatattcagtttattaa
gaactcctataactcaagaataacaacaaaaccaatttaattcagaaaaggacttataataaagaagataacagatggccaataagCATCTTTTCATGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTCGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAACATCTTTTCATGTTtc
aacataactaaacattagggaaatgaaaacaaaagccacagtgagatcacattaccccggtggtgatggctcttagccattaaataggaggtaactgttg
gctggatgtggtaaagttggaaccttgtgcacctgctcatgggaatacaaaatggtgcagcagctctggaaaacaggacagtggtttctcaaaacatcag
acagaattatcatgtgacccagccattccacttttgcatatatatccaaaagtgctgagaacaagggtccaggatatttttgcacacgatgctcaaagca
acattattcacaatagcctgctggtgccaaagtcaaattttaatacattcagttacttaaaacatatccgtgcggtggctcacg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 67953349 67953350 1001778 0 - 1104685222157 NA NA SINE Alu AluYa5 tgtgtgtgttgtggttggtagttagaggaggcttcactgagaaccatggccttgaaagatggatgagatgtcacttagcagggaagggactcccaagcag
aggggctacagagaggcaggaaagtacagagcttatggaaggaagaaagagcagaacagtgtggctgtgctgtttgcacaggtgtgggcatcgtggggcg
gttggttagaaactgacgggccagactggatggtgtggactcccccatacaggcatatagatgccactgttcaggcagagagaagccattagggaataga
agaggcatgtggtaattttagggtgattgtcctaaaatcatctttggctttggaaggggaagagcctagcggcagagactctagttAAGAGGCTAGTGGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAGGCTAGTGGAtactgatgaaaggcgccgtgagcttgaacaagggggaatggaaacggaaaaatcagtccagatataggaagaa
ggcatgtccaaggaagagagggaggggtttgcaggttctaaatcagaaaaatactgagacctttaaaagagtcaaaaccaaacaagcaaaacaggaaaat
gaacagattctttagaggggtggtgatgtgcttgatgtactcagtgctgaatttgaagggtgtcctgcagcctgaggggtgttacgtggagatgcctggc
cagccaggagaaaggacagtggctttgggaggtgcatgcaggcgaacctcgattgtggtcacaacgggacaggaaggagtacagggccaagagtgagcca
agaccagaatctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TERF2:NM:005652:7/10
0 chr16 80721699 80722175 1001779 0 + 1104685107806 NA NA SINE Alu AluY cgccaccacagcagatttcaacctcacttctaatcaacaatgcttctgatttcagtgccaaagattctcaggtgccagggtcacattagataaaagtaat
cttgtaaatttgttaatttctaaaaatctaggtgtcaatttccctgaatcaagggaaaaaagccatactccactgattaacactgttctggatcccagcc
actgatatagtttggatatttgtcccctccaaatctcatgttgacgtgtaatttccagtgtttgagattgggcctggtggggggtgtttgggtcatggag
gtggattctctcacgaatagcttggtgctgtccttgtgataatgagaagttatcactctgtgtatatatgtgtatatatacacatgcgtgtgtatNNNNN
CACACATGTATATATATGTATATATGTGTATATATACACACGTGTGGATATACACGTGTGTATATATATGTGTGCGTATATACACATACACACACACATA
TATGAAATTGTAAATTACCTAGAGCACTCAAAACAATTTTGAAAAGAAAGGACAAAGTTGGATAAATACACTACTGTAGTTCAAGACTTAATATAAAGCT
GCAGTCATCAAGATAGGTAAATATTAGTGTAAGAATGGACACATGTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCA
GGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTA
CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGTCTGGGCGACAGAACAAG
ACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNcacatggataaatggagcagaatagagtgtccagaaataaatccacagcagcgta
atcagtaccaaggataatctgtagggaaaagtgtggtgttttaaccagtagcaccagagcaactgaacatttgtatgaaaacaaaacaaaacaaaagcaa
accaggaatctcagccctttacttacaccataaacataaataaactctaaataaagtatagacataaatgtaaaagttaaacctatacactttttagaag
aaaactgtcataaccttgaggtgggcaaagataagaaacaaaatatacatcataaaaaatcctgacaaatcaggcttcatcaaattaaaactttctgcct
ttggagagatagcactgcaattacaaaaaggcaagctatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 13377572 13377573 1001780 0 - 1104685551306 TTTTCAATGAGTTCCCAGACC TGCAATCAGATTTCTCCTGCT SINE Alu AluYa5 tctgagacatctgtgaaaatgctctcagagaagctcttcagggatttacagtccttcctatgttaagttctttctcttctgatttgttacattaaataag
gcaggaattttaaacaagcaagaaaagaactttatactctagactatgatctttgacgacaataaatgtcactgaagattttgtttggttctgtttcttt
ttgggttattgctctcctatttgatcaaattatagaccctatctaaagctttaggaagttgtttccatgaaagtaacatctttctatcgtgatgcaatca
gatttctcctgctttttgttattttgatttaaattctttgcaatgaatggaaccaatctcaaatgacagatacagagttgccttAAAAATTAGTAACTTC
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCT
TGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAATTAGTAACTTCgt
ttataagtattctttgtatattttcattattatttttcttacctcccctttaaaggtctgggaactcattgaaaacagagtctctgttccagacctttct
ccttccaaacaagacttaggacgatgacatttcctttttctgtttcttcaaggttgctgtgaggataaagtgagataacctacaaagtcaccttaagcag
tgtgtggattgtagcagatatgtattaaatattcgtttctttcctatttcccttattaagcagtttaatttctattcagcagtgcatgccatttacaagg
ttggtatgcaaatgtgaaagcctaacttgactatatatattaaccttatacatgtagatattttacactttacacagttccc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 483 186 NA intron:HS3ST3A1:NM:006042:1/2
0 chr17 42757410 42757411 1001781 0 - 1104685415529 NA NA SINE Alu AluYa5 ttctttctgaaaggatcactctggttactgtgaggagggaaatcaggtaggtctgggttcctgaatgccaagtgaagaaagtacttcaagagtgagcaat
caggctgtgcatggtggcttatgcaggtaatcccaacactttgatgcgggggtgggggtctaagcaggagggctgcttaaggccaggagttcaagaccag
cctgggcaacagtgaaactcccacctctacagaattttttttttaatcagctggacatggcgaccttagtcccagctactccaaagactgagccaggagg
atcttttgagcccaggagtttgaagctgcagtgggctatgattgcaccactgcactccagcctggacgacagagaccttgtctAAAAAAAAAAAAGGGGG
CGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGC
CTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCT
GGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGgggtggggtgggcggttaagatcagtactgaat
ggttcgctaggtttcacaacacggaggacactgacaaacttgaaaggagccatctgggtggggtggtaaggagacaatgtcctcagagtgagtacaagag
agaacggggtaaagaaattgaacccagccagtagggtaggctctttcaaggaattacgttgttaagagaaataaggcagtagctgagaggaaaatggggc
tgtgaggctttaagatgagaaaaacaaaggcgtcttcactgaagcatgactctgtatgacatcctttcacaaaataccttcctctttcctctcatgccac
atttccctcacaagccgcccgactcgctcgcttttctctcgccagaggga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C17orf57:NM:152347:2/25
0 chr17 20402144 20402145 1001782 0 - 1104685503408 NA NA SINE Alu AluYb9 cctggtcagttttttaattgatcttttgtataatttttttgtttaagaaagggatcctttggcagaaagaaaatctgaaactctaaatactgtccatttt
atccatatattgttggtcataccctcaaaatatatcctgattccagccatttgtcatgaccactttaatctgagctcccttcatttttcaccgggattat
tgtaccagcctccccagtggcctccccactgccacctggcccctccccagggctcagcaagatttttctgcaaaggacctggtagtaagcatcttgggct
tcgtggaccctgtggtctttgttgcacctactcagcagttactcagcttcgccactgcagccccaaagcagccccagacAAGAAGCGAACACAGGGGAGG
CTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGAC
TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGCGAACACAGGGGAGGactgtggctccaataaacctttattcacaataggaggggggcttc
atctggattgtgggccatagtttgaccacccctgcctgacttcatggcaacactaaccttcgtatttacgcctcttttttttttaatatttatttttgtt
gtatgtatttatgatgtacaacatgatgtttctttttttttttttttttttttttagtatttattgatcattcttgggtgtttctcggaaagtgggattt
ggcagggtcataggacaatagtggagggaaggtcagcaaataaacacgtgaacaagggtctctggttttcctaggcagaggaccctgcggccttccgcag
tttgtgtccctgggtacttgagattagggagtag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 10828854 10828855 1001783 0 - 1104685550497 NA NA SINE Alu AluYa5 ggagttgggagagcaaggggaggcacagggctgcctcctgactgtcattcgtcacaatggcccatggcactctgagttcactgaagatgtcatccacatt
ctgtccaagggaaagggctgtgaaatgtaaggggattgactctgcactgcttcaaagaatgagtgaggaccagtgagtagaagttacagtgaaggctatt
ttcaatttactgtaggagacagaatagcagacgggctgagtgcatcagcttcggagtcaacagctgcacgatctaaggcatgtaacttgtctttctgaac
atcagttttcacatctatagagtgagaataaagtagagtgcttagcatttgcctaggccatattatctttggtttcattagcattAGAAAGAGCATTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCATAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGAAAGAGCATTCTGcagcagttataggtcagcctctgagactagaaggatttgggtaaatgaccatctgacaaggaaaa
aatatctcagaatggagacaggccctgtccaacccaaggacctgaagtctgggcaatgcctctctaagcagttcaccaactgcaggtcccctctgactta
tgtttccaaaacagagttcttgctttgttttgctttgtttttctttgttttgtttcccagaagaggataaaagagcagaacaatgtactgaaagtaacta
gaagtttttttacatgtatcctcagggcagcagtttctgaggtctctgaataggaaaagagcaggctgcatgtcttcagcaacatgcctgctttgtgctg
aatgaggatagggcttctgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 52302582 52302583 1001784 0 + 1104685418180 NA NA SINE Alu AluYh9 ctagagattgaacccaggccatcctccccactgcctttcatcatcaacacaaccaccaccaacagtattttaaaagtgttaaatattggcagacgtgtca
ttgttctgagcactaggactagggcttatgcggctgtctgaggaattccctgtacaaggaaacatcatataccaaaaagttactcatggaaggagtttgg
agatgatgagctaaaagtattacacatggactattgtaaaagaaaaaaaagcaggcacaataaaattttagaatgtacttaagaagcaattcgtgacttg
ggaaaccccaaacccaatgaggatttagtgtttcaatgacacaacatcagaggcaagtattcatagagtgcatacagaagcaaaatAAGAAATGATTTGA
ACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCGGTGAAACCCCGCCTCTACT
AAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGC
TTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAAATGATTTGAttgg
ttgccttttttggcttactttcttggaaagtccccagtctcatgatcatgttagttggctgcttatgattggctgaggttaagttttgtatctaacataa
gcatttaccaaaaatgacccaagttaagtttcatttatgtttacagtttaagtaggttagggctatttttaaggcctagttggtttgtttgctcaggaat
gtttcaagcctagtttccattttaattttgctttgacagttccccacttttagtcaccccgtccgcaagctgagagtgtgaccaaatggcatagcattac
tctcagttaccactattgacatagtctaggaagaagagtcagatgtttatcaatagctgccctagggctcagagtcaccctc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr17 49312127 49312128 1001785 0 + 1104685417467 NA NA SINE Alu AluYa5 caatcaataaatgtgattcatcacataaacagaactaaaaatgaaaaccacatgattatctcaatagatgcagaaaggactctcaataaaattcaacatc
tgtccatgttaaaaattatcagcaataggcattgaaggaaaatacttcaaaataataaaagtcatctgtgagaaacccacagacaacatcatactgaatg
ggcaaaagcagcaagccactccccttgaaaactggaacaagataaggatgccgtcttgtaccattcctattcaacatagtattggaagtcctggccagag
caatcaggcaagagaaagaagtaaaaagcatccaaacaggaagaaaggaagtcaaactatacctgtttgtagccaatatgattctatactAGAAAACCCC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAA
AAAAAAAAAAAAAGAAAACCCCatagtatctttccaaaagctctttgatctgaaaaataacttcagtgaagtttcaggaaatgaaatcaatgtacaaaaa
tcaatggctttcctatgcaccaacagcatccaagctgagagctaaatcaagaatgcaatcccatttacaattgccaaaataaaatacaataagctaccta
ggaatacagctaaccaaggaggtgaaagatctgttaaatgagaattaaaaaaataagacatcagagatgacacaaacaaatagaaaagcatttcatgcta
atggataggaaggatcaatattgtcacaatggccatactgccgaaaggaattaatggattcaatgcttttcctatcaaactacaaataacatttttcaca
gaattagaaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 22792028 22792029 1001786 0 - 1104685181528 NA NA SINE Alu AluYa5 ctgatgtctagaatcgtgtttcctaggcttcctttcttttttatctgtgccaatcctatgggaattttcattactcctcattcttttaagagtcaaagaa
cgtaaacaactataagcaaatttagtatttatatccctgttatgcaataaagacaaaacaaaagccagggaagtgaagtaatttgccaaatatcatatag
cctggcaaagtcaagactagaaatgtctgagaatcaggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggtaggtggatcacctgag
gtcgggagttcaagaccagcctgactgacatggagaaaccccatctctactGCTGGGATTACAGGCATGCACCACCACACCTGGCTAATTTTGTATTTTT
CACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAT
TAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAAAAAAAAAGCTGGGATTACAGGCATGCACCACCACACC
TGGCTAATTTTGTATTTTTtactcaggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgtagtgagtggagatcgtgccactgcacta
cagcctggatgacaaagagtgaccccatctaaaaaaagaaaacaaaaacaacaaaaaagaaagaaagaaataagtagaatgtaatttttcatgtcataaa
cataaaatgtacctaggcacttttctacctttcttttgcacaggtgtgagtatatgcatacatacctgcctgttcacccaacataacccacacatacaca
cacaatctactcacaccacagctatctttgcaaaataggtaactacaactccagaagaagattctctgat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CHST9:NM:031422:4/6
0 chr18 25785875 25785876 1001787 0 + 1104685180818 NA NA SINE Alu AluYa5 atgttatcaatcactggcatgttgctaaatatggtttatatttctcatctcttattttgcttgcctttctactgtcattacatatatatgtatatgtatg
tatgcgtgtgtatatataggtatatatatatgtgtatgtatatatatatagtgatggaaactaacaatgactttatattgacacagatctgaactatgtc
attttgtcctattattcttagctaaaccaacaagttcaagagtcaacccctggccatggaaatttataccacattctggatagacaggtacaaaggaggg
ataaaaaggtaaaagagtttggtgtactgacagaagagtggctgccacttgggccatgactcctcataaagtgaagaagtatttacTCAACTTAACTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAATCAACTTAACTCTTaattattgaatggtaaatgttgctgtatgtagccatgtttacattcaacaaagtgaggttaataatgttatcaagtgtg
tatgtttcaatctttttttgaaaacaaagttatttaagtaaatttctgaaattattaattaatcttgcactttaactttgtcatctcaatttttttcagt
cctcatgggctaaattcagtcaatatacctgtttttgttgggttgacagaatactttaaaaaaagtattccaagatatttagttccaatgcctcctacca
cattattgcttcaaatagcctctctatctatgaatgaaaactgcctaacccatagtggcatttgggtttaaagctcaaatgaaaacaaacatatacgtaa
aacacga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 26054860 26054861 1001788 0 - 1104685180719 NA NA SINE Alu AluYb8 cattttctccttggactctggtctttgatgcatttctttttctctccacagaatttgtcacctatactacaaagaccattccagctcatccatatgtgtg
ctagataccttttctagttttctcagggttgccgtaaaaaaaggaccacagactaggtggcttaaaaaacatacatttattttctcacagtctggaagct
agaactctgagataaggtgttgaaagggttgtttttttccccaaggctgctccttttggcttctgcctaggcctttacatgttcttccctttgcactaat
atgtgttcaaatttgtgttcaaatttcctggtcatattggattatgtttcattttaatgacctcattttaacttatttacctctttGGAAATAGGGTCTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAGGAAATAGGGTCTTaaatatagttacattctgaggcactggagcttaggacttcaatatataaattttgggggaaacacgattcagcttatgaa
acttggtacttctcctaatttagcacaaatttctagatgtataatatttatttatttgtatcctccagaagactatgtaatttgagaacaagttttgatc
atctttgtcttatcatatcactggagcttgatccaatactcagtacatactgatgaataaatgggtatgagttttttcaaaattaattgacatttgctca
gatctatactgaaatttattgttcctctatattacaaaaagtctaccgggagaggtggaggttgcagtgagctgagatcatgccactgcactccagcctg
ggcgac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 27257623 27257624 1001789 0 + 1104685180479 NA NA SINE Alu AluY tacaacttttaaaaaaatgaaaaaaaaaagagagagggaaacaaaaaaggaccatactttcgttagaaattcacagagctaaggttttctgagactgata
agattaccgagttaaaagtaagagagaggctgaatgtgtgtttgatagggaggcagcaagtttgtgtggtgagtgatggtgaggtgttggcacaaaagtc
accatgcatgcatgtgatcagaataaatattgattgactaggaagtcttgttaaatacacattatgtatttaacaaggaggcactgactgggtgatgact
ttgatatcagtgtggcatgagccaccatatgtagagaacatgaaactagataggaattattaaaaaaaaaaaaaaaagagtTAGTAAATACTTGTTTTTT
CAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT
GAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAATAGTAAATACTTGTTTTTTtatgtgtctagca
ctaggctaattgtttctcaaaatttttcttatttaatgcatcttatgatctttcttttatagttgaagaaaattgaaaagaaaaactataaggaaatcac
cgtgaaccaattccagtgctcattcatttattcattaaatgttttttgagcattttcattatttgcatatgagctaagggctaggtatagaaacgtgaat
tagggtccttaccatcaaggacctcagtcagattcaggaagaagtaaagggttgaaatacagtatgagatacagttatacaagggggtatgaatgagtgc
taagggagaagagaagaggggcctagcattaatgagctgggaaaggcttcccataagaaatgaacttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 6511718 6511719 1001790 0 - 1104685494917 NA NA SINE Alu AluYa5 cttggagcactaaaggaaccaatgatagagttggaagatgcttgaaaagaggcaagctgtacattagagttgcagttccacaggtggacagcaggggaag
caagagatcaaaaaaggtttgagaggtcctagaacctctagctgggctgatgggtgaaagccttccctgcatgaagccagtatgtaaagactgggagatg
tggttgatttttcaaatgcccaaatttcaacagattataaggcataaaaatgaaaaaagaaaacacaacctaatcaacaaaacaaaatgaatctctcaaa
actgatccaaaagaactgcaaatctatgaactccctgacaaagaatttaaaataacagtcataaagatgaccaatgagctttAGAAAAAGAGAACACATA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAAAT
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAGAACACATAacccaattaaaaagaaatcaggaaaactatgcatgagcaaaaggaga
aaatcaacaaagagatggaaactataaaaaaaaaccaatcgagtttttattcttcctttaaaagacagttatttgaaaaaaaaaaaccccaaaaatatct
gactaaaaaattcactaaaggggttcaacagtagacttgatcagatagaagaaaaaaatcagtgaatttgaaggcaggtcatttgaaatcatccagtcaa
aggaacaaaaagaaaaaagaatgaagaaaagtgacataagggacacaatcaagtgggcccaacgtatacattatagaaatccaagcagagagagagagag
agagagagagagagagaaaggagcagagaaattat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 2294407 2294408 1001791 0 - 1104685493662 NA NA SINE Alu AluY agaaattgaaataagatgtagtgcataatttacttatcaagttattattgtacatgcttgctggaaactcccatggcaaaatgtgtaaacaaataaaagc
aactaatttttttcagtttgtcagtctagctgctccagagggattgctctccaactagtcagcccatcaggaaatagacatggagcagaggtagaaagac
ttacacactttctatttatttctacatcagaggaatgtgggctttcctgttatgattcatatttgatatctgcaaactgtggaaatggctggcctcttaa
taccttgttgaagaacggcagcaacaacaaatgcataaagtcattgtcatttgtgtcacaaaactttcctttgattctttgggttAAAAAGCCCAGTAGA
TTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCG
GGCGTGGTGGCGGGCGCCTGTAGTTCCAGCTACACGGGAGGCTGAAGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGTTTGCAGTGAGTCGAGATCGCG
CCACTGCACTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGCCCAGTAGAgcaaaagtttcagaaccttttacacct
cttggaatttacataatttaaccatctacaaattaaattattaaacagtattaaaggcagggttcccagagtaaatgatgcatctttgccattcatttcg
tttgtcccattcagttaaatttaaccaataggaaaacctagactaaaacaataatagaaaattactgcaaattagtcagctggacttgagaggcacactg
taaaaacatgtctaatctattttcctttgtgagtctaaactacttttccaattacttggtgagccctctccaactttacaaggactgttaagagagaatc
taattagagatctgttcactgaagtacctagagggtcattttgccaggagcaaaaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 10901136 10901137 1001792 0 + 1104685755944 NA NA SINE Alu AluY catcatctcaggttttcacttaaggctaataagatctaacatttttaataattgggaagacatcaatagaaatataaacttttctgttctaaaactgtag
aattggttatgacataggaggtgatgaagctaggggagagtcaaccatttcctgggattctctaattctgtaacttactttgtgtactgttttacagttc
aagatgcgttttcacatcaattgccccattctatctttatttccactctgtgtgcaggcaaggctttatgaagtaatgctctacaaagaaactgaggctc
ggaggggcaaaatgacgacttgatcaaggtcatacagttaccaaaagggtggtgacaggactattgatttataatcaataaattacttaAAGAAATTACT
TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCGGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAATTACTtaaaagacaagagtaactaaaatggagacatgccaacccttgcttacctttcaaagccgatctgccggaatgtcttttc
ccatgttgagcctgtaatggaagggagagacataatcagggcacatcaaggactcagatagttttgttcggcttttccacacacgctagatatttggttt
tatgtttaggtaggatgactggtttttcttcaaatgcattactccccacctccagtcccagatggcctttgtagagtacagaaaatttaataaaaagtcc
gcatatacagaagtcgagtccacatagggatttaagtgcatataacctgcaatgtggccagccgcaatggctaacgtctgtaatcccagcactccgggag
gccaaggcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 48185370 48185743 1001793 0 - 1104685128457 NA NA SINE Alu AluYa5 ggatggcattgaatctgtaaattaccttcggcagtatggccattttcacgatattgattcttcctacccataagcatggaatgttcttccatttgtttgt
atcctcttttatttccttgaacagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaa
gcaattgtgaatgggagttcactcacgattcggctctctgtttgtctgttgttggtgtatacaaacaaccccatcaaaaagtgggcgaaggacatgaaca
gacacttctcaaaagaagacatttacacagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaNNNNN
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCGTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACCCCACAATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGT
GGAGAAATAGGAACACTTTGACACTGTTGGTGGGACTGTAAACTAGTTTAACCATTGTGGAAGACAGNNNNNNNNNNNNNNNNNNNNCATANNNNNgatg
agctcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactgtcacaagaacaaaaaaccaaacaccgcatattctcactcat
aggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgttgtcgggtggggggaggggggagggatagcattgg
gagatatacctaatgctagatgacgagttagtgggtgcagcgcaccagcatcgcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccc
taaaacttaaagtataatttaaaaaaaaaaaagaaaacaaaaaagaaaactccattcttaacttcgggctgcaaagtagaaatctgcccat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DCC:NM:005215:1/29
0 chr18 64550155 64550156 1001794 0 + 1104685563731 NA NA SINE Alu AluY gcatattaggttggtcccatctgaggttccattgcctcaaggtcattttagtggccagagggataaacaattttatatatgtatgtatacatatataata
taatataaacaattttgtatatgtatgtatacatatatgatataaacaattttgtctatgtgtgtatataatataatatatgttatatgatctcctatac
aataatgctcattcagttatatatcagttgtcaaattcatttggagcaaaactcttcagacagacaatagtcttgagattttgaaatctctgaacaccat
ttctacttcagtaaaagtacagaaaattgtacgaattagtgcaagcaaagctctttttggaggaaataaatctttatttatttttaAAAACTGAACACAT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCAAAAAAAAAAAAAAAAA
AAAAAAAAACTGAACACATatcaaaggagaatggcttacagttattgagatttaagttatagcatctgctaaatactgactatttttctcacataaaagt
cctttctcagtcctttggctttagtactctaagagcactctgaggaactttattcatgttgatatattttgagttactcaaacattaaagttcagaaaat
ggagaagttaatttcagtaaaatacactgcttcaggggggaatcttcaatctctttcctgtgggccagtttttatggaagcacagggcttttcttctatc
gccctgtgtattttaaattatttctagtatttctatggtggataccataaactgtttggttaataataaccatagcttgaagtcttattccttgaaatgt
gtatc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CCDC102B:NM:001093729:2/10
0 chr18 64723481 64723482 1001795 0 - 1104685563794 NA NA SINE Alu AluYb8 gagttactgcatcacgcttgctttgtttccttatagggtgatgaaagtgctttggaattaaatagacagggcggtcccataacattgtgaatctactaaa
taccactaaatgttcactttaaaatggttaattttatgttatgaaatttcactttaatgaaaaagagaagaaaaaagaatagtgaatggctcagatctat
taatctgagtttacactaatcttatgattttaactcaaacttgcattttagttttaattttaaataatctttgtaacaatagtgttttatgtccttttaa
ataggaaggtaaataattatttatctcattattttgtaataatatagtggattattagtagtatgctagttacatcaaacattaaaaaatatATAATTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAATAAA
TAAATAAAAATAAAAATAAAAAAAAAATAATTTCcagctgacattcgtaaatgtcataatttttgctacggtattttattaaatataagtgatttaaatt
gtcaaattttgcatctttgttttaattggatatgggttaacatatcacctgtttgatacacatgaaggagattttaaagaataatataaacttccaataa
tcttatatttgccttactgatagaataaaagtataagagttgaaaacaaatcaggaaacataattaaattcaaatagtaataacagaagcatcaatactt
aaacttatgcatttaacacacagttatgaggatgtgccaaacactatatttagtagggactgagatttaaaattcatgattttagcaaaacatagcagtg
aatggtataagagaatatgaaagtaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CCDC102B:NM:024781:6/8
0 chr18 65311046 65311047 1001796 0 - 1104685563996 NA NA SINE Alu AluYa5 gtcttttaaaatattttataatcttttaaagtgctactcaaagatgaatatgaatattgtgcttctatgttgatatagagagattataaacttcacctgg
gaggttctggaaagatcttaatattgttggtgactgtcatacaatgacatcatcatgatgtttatatagatgtgatagctaatattttgagggcatttgc
tgtgacaataagtttatattttcatttaagattcttaaatataaggcaggtagtattactattctcatttgaaaaggaaaaagcacaggtagtaaatgac
agagctgggtttgaagctaaatactcaagaaaagaaaacgttccttttgagtatttcttacaccatccttaaaaatccaaagctatAAAAAAGCCCACCA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGCCCACCAtggtggactgggtaaagaaaatttggtacatatacaccatggaatattatgcagccatagaaaaagaatgaaaccatgtcctttgc
agcaacatgaatgcagttggaggtcattagtctaagtgaattaattcatgaacagaaaacaaaattctgcatgttctcagttggagctaaagatcgatta
cacatggacacaaaacagggaacaatggacatcagggcctatgttgaggatggagggtgaggattgaaaaactacctatcgggtactatgcttattatct
gaatgacaaagtaatctgtacatcaaactcccgtgacaggcaatttactcatataacaaacctgcacatctatgccctgaacctaaagtgaaggttagaa
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DOK6:NM:152721:1/8
0 chr18 55301101 55301102 1001797 0 - 1104685561068 NA NA SINE Alu AluYa5 gagtagaaaataatgatcttaaataatttttttcatcacattttaataaaaaataaagtgtaccaaaattcttagaagaccttatataacctacatgaaa
gttctaattatttgacaaagctgaaacttgttttaagacacagataatgtctaatttcccaaatcagtggtttgtgctcctttctccaccatgatgtgta
aatggtgtgttcacacaggtgacatgataggctgtaggtgacatgcagttcccagctggtagaccacgtttaactcagtttctcttcctagaaagcatgc
ccaaacacaaatgagcgagaatgatgttgcagtaggaatgaccttgaatcttatgtctttaatagttacaaaaaaaaatacttcttAAAAACGGTAATTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTTTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAACGGTAATTTacctttatagtcaaaatatcttggggtatattcttgagatttgcagatccactgtaagctggttaattctcagcttctcatatat
gatgatggaagtggtgaaagcaaggaatggggaaagtaatgcgagcaggagacaatgagacaaagggaacattagctccagcagaaatgccagggttgtg
ctattttacataaaatgtagagactttataaccatataggtccatttaaccaactgccattttttcctacagttgtcatatttattgcaactacatgcat
tataaaccttgtaagacaatgtatgttattatttttgctttaagaaattcagagcaagtctttgctattgtgaatagtgctgcaataaacctatgtgtgc
c Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CCBE1:NM:133459:2/11
0 chr18 44777844 44777845 1001798 0 + 1104685127498 NA NA SINE Alu AluYb9 ggcaggccagggccagcaagacctgggagcctctgctgcccacgacacctacagttttagaatctggagagcagatgcctctggcttgctaagcaactca
tgaaacaaacagcttgcttcagggctttcttttttgaagctgactttgttgtttgggtggggagatgtgtgtatagataagcttctcaaagtgatgacat
cacaagaataataaaaatgccacattgcaccctgtgtctttcacctcccaggcacgttttcaaaactaatcataggtcaattccccttcttgccagctcc
agggacctgcagagatgggaggcgctgctgaaaaccctctaaggggggcagcgccgccttacctctcagagctgcatttccctctctAGAAAAGGGACGA
AAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAGAAAAGGGACGAgctaggtggattttaaagttcctgccagttcccaattatttacccagaactgattttaactgagtgtttgaccaaagctttgg
tccatgagccttccattgccggggtgtttattttacataaaatttatctggatactcacacgtagaagtttttcttttggtatggaaaggggtcagaaga
ttctccaggttttgaggggccctgaagcttacacaatttgcaagagtgtctccttcaggaaaataatacagaattactgatcataattcggtgctgggtc
ctggtagaggcccaggctgtaatgtgtccagaggcacaaggctcagctccacactctaccctctttcgttgtgattaaaggtccacaggcgtcctgggca
aata Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 61638267 61638268 1001799 0 + 1104685562705 NA NA SINE Alu AluY gcagatgacccagatcctggttactgtgagaaggtacttcctcagttaacaggatccctgagaaagctggttttgcaatattgagattcctcttgtaatg
gtagtccagtcaaagtgatatccaaaaaagtttatttagttttagtgagaacaatcctaaagggttgagccctcacagcgtgaatctccccagcccctgg
ttattaatccttgggttcatgtggttgtctaggctcctgagggtaattcgaagcctgagtatgcagaacccgtgttcctttgcttccctaaagtgcgaaa
gatttcagaaatggctatcgtctgttacatgaggtacatataccaaatttttaagaagattcaatagtagcagaatatgcttAAAAAAATCATCTGAGGC
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATCATCTGAGGCtgataggatattagatcatcagatttttttcctatacttaaaaacagcttttgaacaatagcaatataagtt
tatattttacatgcacaatgctttttgtgaacatggattataaataaatgaaaagttctgagttatggtatcagatgatatagctatagaaaaattattc
acaaagcctaaaatatgagccagtgtctttttcaaagagcccatagatagattttttttttgctaagcgtaagtgacttaaacaattactgattattatt
aagcatgaaagtctcacggagttataggtatccaattggtcaagactagactttactagttcagtcatatgatattaacaattttctctgtgtgtgtgta
tttatataca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CDH7:NM:033646:4/12
0 chr18 62035151 62035152 1001800 0 - 1104685562880 NA NA SINE Alu AluYa5 attctttatgagtctcataaatggtgtcatttttaagagcacaatttcaaaaggcacatatgagaatatagtgatatgacaaaatctgtctaggatattc
aaacagacacgtaaatctccaaggggctgggtagaggtcaacatttatacaatatttataatgaagagcccaagaaacatcttttcactattacatttca
tgttcatcactgcattacacaccatgaagctgacacttttactggctgaggcattaccacttcaaaatcaaattagaaatcaaaagcttttcttccccac
tttggtttgaaaaaatagtaccctataaagactatcaaatatcaaataagtatatttcaagttgtgtgctgctttttttttttcttAGAAATTATTAAAT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAAATTATTAAATttcagtgacataaattccctgaaaattcagtgataattagctactcttaaacttatacacacaactcttggacaaa
tcatcttgttatcacaaagcaaagaaatgttgttagcctaacaatactgttggtccatcaccactcattgcttaatggcagattcagccatttttactct
tctaagtaatgatgtatagaatgaaggaagaagtgcagaacatagcaggcactcctttttttttttttttggattttgttttaaaaataaagccccctta
aagccagaagacccgattgcatcttagtcagtcaactgattaaatgaatgtacatgaacgttctttgtaaggcttagggtgtaagtggtgtgtagatatg
ttagggggat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr18 47767069 47767070 1001801 0 - 1104685128321 NA NA SINE Alu AluYg6 gcatacaataaaaattgagtgaatgaattccgatgaatcaagaattgcccttggctgcttatggatttaaggtaactcaatgcttctctgccaaaactgg
aaaaccttgaaatgttaatgacttaggctatgatatatccataggagaaatgaatgcaaattccctgtcttggtgaaattgcacccctttaccagaggaa
ggtagcagaaggtgcttttctcttattaaggacaggcagtccttgggggttactgtacggtgagaggtacctgtatggctgctattctcctgctctggtg
tctgctatatttctttctttgtcttttttaatgcctccccaccttggctactccccacttctgagtctgatgaccagatggcatcatAATAAAAGCAAGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGATCATCCTGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTGTAGTCCCAGCTACACAGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAATAAATA
AATAAAAAAATAAAAAAAAATAAAAGCAAGCacagtttatagcagacatcagtcagaacatgggttccaatgcttctggcccaggaagtgagaccagggc
tctggctggaacagacatgtgaaaatttaaggttttctaagcaaatagtaagatattataaaaacacttttccactaacattttcaaaattagtgtgttc
aatatgaagtatattcattaacattttggacattatttttagataaggagaattaaaagaataatgatgttatgtttccaaaaatgttaaatattaagtg
attataagtgaactattgtctgcagagaggcaaaccaatacagtacaattgatatcaaaaggtttctgccagcacagtttgatctctgaatgttcaagta
aattatttttatgtttaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 7710025 7710026 1001802 0 - 1104685064212 NA NA SINE Alu AluYb8 gctcccagggggattggacccaattgcccttttcagctcattggtgcctttgtattgggttccttcctttccctacctgctcctcttcattcatcccatc
ccctgctgatgcttcttggaatctcctcccagataagctacttatatccaaatccttgtctcaagctctttagtaggggaaacccaagccaagcttatat
tttgataactaccaggcatggctccttttatgtgggagacaaggtcttgctctgtcacccaggctgaagtgcagtggtgcaatcatggctcactgcagcc
ttgacctcatgggctccagtgatcctcccacctcagcctcctgagtagctgggaccacacgtgtgcatcaccatatctagctactttCAAAAAATTTTTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAACAAAAAATTTTTTtagagatggggtctcactgtgttgcccatgctgttcttgaactcccgggctcaactcatcctcctgcctcagcctcccaaagt
gctgagtttacaggcctgggccgctgtggcctgcctggtcatggctcttctctatcaaaatgttctcaggtattcttgtgcaatttttggatgatttttg
agtctactctggctttaaaggttttcatttacttgtggaataagtcacgtgtgcacacagaaccaaaacgtatcaatctctacagtgaaaactaaagctc
attccgtccccgttttcccatctcaagaggttactgtccccacttgtagctttgctatttattcccaactaaagagtataacctctttattatattccaa
ataa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 15788952 15788953 1001803 0 + 1104685512540 NA NA SINE Alu AluYa5 accccacccagtccttcaaaaccaccaatttgttttctggctctggctctatggacttgcctattctagacatttcatataaatgggactatatactact
atatataacgatgcattatgattgcccctgtgagtagccacggcactccagccattttgtcaacacaaaaatgtcgacattgccaagactgagaaacctt
ggtctgcataaactcacatagagttcactctaagacgctgagtgaaaaaccaagttacggaaagatatctatgggagaatcagatctgcattttaaaaac
acacaaaatggtttgacagtttatcaaaaagttaacatagaaattatcaaaggactcagcaatttcactcctaggtatacaccAAAAGAATGGAAAAGGA
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
GAATGGAAAAGGAttcaaacaaatccttggacatcaaatgtgcatagcagcactgttcacagtagccaaagggtattttttaatttttctgtagagagta
ggatttcactttgtttctcaggctgctcttggaactcctgggcttaagcgattctcctgccttgacctcccaaagtgcttggattgcaggtgtgagccac
tggacatggcctgatccaaacgtctatcaatggcagatccaaatgtctattaataaataaatggataaacaaagtgtggtataatcatataatggctatt
attcagccacagaaaggaatagcatcccagtccaggccacagtagagatgaacgttgaaaacatgtgctatgtgaaaggagctaggcttttaattt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 15937806 15937807 1001804 0 + 1104685512633 NA NA SINE Alu AluYd8 tgggaagatcgcttgagcctaggagttctagaatggcctgggcaacacagtgggacttcgacgctacaaaaaattaaagaattagccgaggctaggcgca
gtggctcacgcctgtaaccccaacactttgggaggctgaggcgggcagatcacctgagcacaggagttccaggccatcctgggcgacaGGTGAAACCCCA
TCTCTACTAAAATACAAAAAATTAGCCAGGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCACGACAATCGCTTGAGCCCAGGAG
GCAGAGGTTGCAGTGAGCTGAGATCAAGCCACTGCACTCCAGCATGGGCTACAGAGTGAGACTCCGTCTCAAAAAAAAAAACAAGAATTAAGAATTAGCC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCAT
CTCTACTAAAATACAAAAAATTAGCCAGGCGTGATGGTGCATGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCACGACAATCGCTTGAGCCCAGGAGG
CAGAGGTTGCAGTGAGCTGAGATCAAGCCACTGCACTCCAGCATGGGCTACAGAGTGAGACTCCGTCTCAAAAAAAAAAACAAGAATTAAGAATTAGCCa
aacaaacaaacaagaattagcctggtgtggtggtgcatgcctgtagtcccagctactcgggaggctgaggttgggggctcacttgagcccaggagtttga
ggccctgattgtgccacagaactccagcctggagttcagtgacagagtgaggccctgtctcaaaaaataataaaaataaaataaaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 23708906 23709306 1001805 0 - 1104685515907 NA NA SINE Alu AluYb8 cggtggctcacccctataattccagcactttgggaggctgaggcaggcggatcacgaggtcgggagatccagaccatcctggctaacacagtgaaacccc
gtctctactaaaaaaatacaaaaaaattagttgggcgtggtggggggcactgttagtcccagctactcaggaggctgaggcaggagaatggcgtgaaccc
aggaggcggagcttgcagtgagccgagatcacaccactgcactccagcctgggcaacagagggagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaa
ctagcaagctgagttcataagcaaatcaaaaagttattttgccactatcatgtgagctttattttatgaatgcaaaaatgttcatatACAAGTCAATAAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAACAAGTCAATAAGgtgattcaccttgtaaaaatatataagcaaaaaatcataattatcacaagtgcagaaaaagcattcaagaaaatccagtattcat
aaaaatattatcaacaaggctgagtgcagtggctcacgcctgtaatcccaacgctttgggaggccgaggcgggtggatcatgaggtcaagagatcgagac
catcctggccaacatggtgaaactccttctctacaaaaaataccaaaattagctgggcgtggtggtggatgcctgcagtctcagctacttgggaggctga
ggcaggagactcgcttgaacccgggaggttgaagttgcagtgagccactgcactccagcctggtgactgcgagaccccgtctcaaaaaaaaaaaaaaaaa
ag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 1976055 1976056 1001806 0 + 1104685016766 NA NA SINE Alu AluYa5 ttggtgctaaaagacatggagcactggattctgagcacttgcatcctgttgttcctatagaaaggatttctgctgttaggactctaagactgtttaagaa
ttgatttggggtcaggtgcGTGGCTCACGGCTGTAATGCCAGCAGTTTGGGAGGCTGAGGCAGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTGGC
TAACACAGTGAAACCCCATCTCTACTAAAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGG
AGAATTGCTTGAACTTGGGAGGCAGAGGTTGCAATGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTGTCTCAAAAAAAAAAA
AATTGGCCGGGCGCGGTGGCTCACGGCTGTAATGCCAGCAGTTTGGGAGGCTGAGGCAGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAC
ACAGTGAAACCCCATCTCTACTAAAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAA
TTGCTTGAACTTGGGAGGCAGAGGTTGCAATGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTGTCTCAAAAAAAAAAAaaaa
aaaaaaaaaattgatttggggtcaggcacagtggctcatgcctgtaatcccagtgcttgggaggttgagtcgggggatcgcttgagcccagggattccag
accaccctggggaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 2334651 2334652 1001807 0 - 1104685016930 NA NA SINE Alu AluY acaccgcatggagcttgagtttcagacaatcaaacatccttttgtagcctaagtgtgtccctgggatggttcagtctatgcaataccttggccgggcttt
ggttctttggtcaaacattattctagctgttgctgtgaaggtaatttttagatacaattaacatctatttatttatttttattgttttgagatggggggg
tctcactctgtcccccaggctggagtgcagtggtgtgatcatagctcactgcagcctcgacctcctgggctcaagcgatcctcccacctcagcctccaga
gtagctggaatatggatgtgtaccactatgccagcAAAAAATTTCTTTGTAGAGTCAGGGTGCAGTGGCTCACACCTGTAATCCCAGCACCTTGGGAGGC
TGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGGGTGGT
AGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCA
CTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAATTTCTTTGTAGAGTCAGGGTGCAGTGGCTCACACCTGTAATCCC
AGCACCTTGGGAGGCgagataggaggatcactggagtccagagctcaagaccagcctgggtcatgtagggagaccctgcctctaagaaaattttaaaaat
cgtaatttttttttttagagacggggtcttgctatgttgcccaggctggtctggaactactggcttcaagccatcttcctgcctcagcctctcaaagtgc
tgagaaccactgcacccacccagcccaattaacttctccttttttttttttgacggaatctagctgtgtcacccaggctggagtgcagtggtgcaatctt
ggctcactgcaaactctgcctcccaggttcaagcaattcttgtgcctcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 6874865 6874866 1001808 0 - 1104685516359 NA NA SINE Alu AluYb8 aacgtgacaagctaagtccttcttctatgccatttattcataattaattttaaaattaattttaaatgtctctgagtggtttctgtgggttaaagataag
ccaggcaccatcttatgagcacctctctatgatattatcaAAGAAAACTGACCATTGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTATGGG
AGGCTGGGGCGGGTGGATCACCTGAGCTCAGAAGCTTGAAACCAGCCTGGCCAACATGGCGAAATCCTATCTCTACTAAACAAACAAACAAAAAATATTA
GCCAGGCATGGTGGCGGGCACCTGTAATCCCAGCTACATGGGAGGCTGAGGCAGGAGAATTGGTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGAT
TGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAAAACTGACCATTGGCTGGGCG
CAGTGGCTCATGCCTGTAATCCCAGCACTTATGGGAGGCTGGGGCGGGTGGATCACCTGAGCTCAGAAGCTTGAAACCAGCCTGGCCAACATGGCGAAAT
CCTATCTCTACTAAACAAACAAACAAAAAATATTAGCCAGGCATGGTGGCGGGCACCTGTAATCCCAGCTACATGGGAGGCTGAGGCAGGAGAATTGGTT
GAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATacacctctgcactccagcctgggcaacaagagtgaaactcagtctagaaaaaagaaaaagaaaaa
gaaagaaaaaaactggccaatttctagttgtgtgattttgggcaagacacttaactgctctgtgccctcagtttc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:EMR1:NM:001974:14/21
0 chr19 58001662 58001663 1001809 0 - 1104685710526 NA NA SINE Alu AluY aaaagtttaaatcctcacatctctgaaaagatatctttctttgcccccgcttatctctctgctctttctttctattctttctttctctctttttttatga
cagcgtctcactctgttgcccaggctacagtgcactggtacgatcttggctaactgcagcctctgcctcctgggctcaaaggatgcttatgccccagatt
cctgagtagctggaactgcaggcgctcaccaccatgcccagctaatttttgtgtttttagtagagacggtgtttcaccatgttggccaggctggtttcaa
acttctgatctcaagtgacccacttgcctcagattcccaaaacactgggaccgtaggcatgagctgccatgcctaaccattgttattattttaaaNNNNN
TTGTCTTGTAGTTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAG
CTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTA
GTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTG
AGCCACCGCGCCTGGCCCNNNNNtgtagttctttagatatttgggcagaggttattgttgcaggtatgttaaacatattaaagttatagcataataaaga
aacttaaaattaccataacctggacgtgtgcagtggctgacacctgtaatcccagcactttgagaggctgagatgggcatatcacctgaagtcaggagtt
caaaactagcctggttaacatgttgaaacttcgtctctactaaagttacaaaaattagccaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnn Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZNF28:NM:006969:3/5
0 chr19 36382518 36382519 1001810 0 + 1104685393921 NA NA SINE Alu AluYb8 ccagcctgatgacagagcgagactccgccaaaaaaaaaaaaaaaagaaaagaaaaaacatagtccgatggtctttgataaagtaccaaagaccataaaat
agtaataaataatcttttcacaaatgatgccaagacaacagaacatccacatgaccaaaaaataaaataaaataaaataaaatctagacgcagatcttac
attcttcccccaaatgaatttgaaaccactaaactcttagaagataccacaggagaaaatcgaaatgacctagggtttgatggtaaccctttagatataa
tgtcaaagggatgatccatgaaagaactaattgataagctggacttcactaaaattaaaattttctgttttgcgaaagacagtgtcAGAGAATTAAATGA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCTGCAGTCCGGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAGAGAATTAAATGAcaactcacaggctggaagaaaatatttgcaaaagacatatctgatagaggattgttatccaaaataa
acaaagaactcttaaaactcaatgaaagaaaacaatgatccagctgaaaaaaatgcgccaaagaccttaacagacacctcaccaaagaagatatacagat
agcaaacagtctataaaaaggtgctctgttccatatgtcattagggaaatgcaaattggagcagcaattacatacctctatatacctattcgaatggcta
aaatgggtaacactgacaacaccaaatgctggtaagaacatgaagcaacagaaactctcactcattgctggtgggaatgcaaaatgaaacagccaatttg
gaagatagtttgggatttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 26327450 26327451 1001811 0 - 1104685453731 NA NA SINE Alu AluYb8 cctgtaatcccagcactttgggaggccgaggtgggaggatcacttgagcccaggagtttgagaccagcctgggcaacctagtgagaccctgtctttacaa
aaaatacaaaaaactagctgggcatggtggcatgtgcctgtagtcgcagctactcaagaggctgaggtgggaggagcacccgagccaggagttcgaggct
gcagtgagccatgatcacgctactgtactcaagcctgggcaacagagtaagatcctgtctcaaaaaaaaacaaacaaaacactttctagaaagaaccaat
aattaaaacagagcagctttagcacaggaataaacgacactgatcaacaaaacaggatgtagcagttcagaagcagacccatgtatgtAAGAATTTAGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAATTTAGTGataataaatataacacttgagttagctgagagaaagaaattattccatgaattcactgggaaaatggc
taaacatttggaaaaaattttaggttcgcagctcacagcgaaagcacaaataaatgccagacagattaaatatttaaatgtatatattttaaatatatat
attctaactataaaagtactagaggaaaacatcggagaatataatatatacatacacacacgtgtatgtattttttagagacagggtctcgctctgttgc
ccaagctgtagtgcagtggtatgatcataggtcactgcaatctggaactcctgggctcaagggatcctcctgcttcagcctcctgagtagcttagactac
aggcacatgccaccatgcct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:HADHB:NM:000183:1/16
0 chr2 26477187 26477188 1001812 0 - 1104685453789 NA NA SINE Alu AluYb8 agctactcgggaagctgaggcaggagaatcgcttgaatctgggaggtggatgttgcagtgagccgagatcgagccactgcactccatcctgagcaataga
gcaagactctgtctcaaaaaaacccaaccaaccaaccaaacaaaaactggataccatttaacagggttctgtcccattagcccgtggggaattaagggca
ctggatgagcagtgagaaagggtgagtactagtcctagccctgccctgccaccttgggcaagtcacaacttcttgaggagcattttctcagctgttaaat
gatgcaacccacagacaactgtgcggccaagacgacccgtcctttgtgagtaagaactgcccagaggcaaatggagtgggtttttAAAATCAGTTCTTCC
TTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGA
ATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGTTCTTCCcgtttgcaagcagtagagaggtttaggaatgccaaaaccatccaacagctatagagtcta
acagcagctgcctggatccttgtctcacacctgcctaggtggtggtggtaggagcgggggtacttgcttctaggcttcagggccttctgccagatctctg
tctcctttggttgaaacctaaagtattaaactctcctaggagccatgatacagctctgaccaaaaactcgtccaggtcctggttcatgtttccactatcc
gtaaggacagaaacaagcatgtgtgcatgcgcatgtctatgcctgggagtgggataccatgagaaagtcagggggaatcagctgttgcacaagaggtaag
tgagagcaaaggtaccatacaaacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 36857754 36857755 1001813 0 + 1104685770234 NA NA SINE Alu AluYa5 atcacttaaacctgggaggccgagggtgcagtaagctgagatggcgccactgcactccaacctaggtcacagagtgagactccatctcaaaaaaaataaa
atggccgggcgcagtggctcacacctgtatcccagcactttgggaggccaaggagggcagatcacgaggtcaggagatcgagaccatcctggctaacacg
gtgaaactccgtctctactaaaaacacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggca
tgaacccaggaggcggagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaattaaaaNNNNN
TTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCT
ACTAAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATTA
AAATTAAATNNNNNaataaaataagtaaaaataaagtaaattaatagttaaacaaattgtcagtattctgtttcaaatgagaaagtgcacagttgtaatt
tctaaatgataaaaattaatagatataactcgtacaaactaaaggtctttggggtctttgacaatttctgagagcataagaaggctgagaacctttgaga
gtgccttaaatttgagagcctttcaaatacatgaagctagacttcatgtctttttttatatctcatcttttccaggatatctctttaatccctccaatag
gtctttgctggacttggcagtacaccctctaactatgctgtagactattaataattcatacaccagggcaccccgagcagaacacagtgctgccagggta
gtgtgccag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:VIT:NM:053276:9/16
0 chr2 34108896 34108897 1001814 0 - 1104685769554 NA NA SINE Alu AluYa5 ggtgcatggaagcaccccatgtttattaactaaactgattacaattatgtatttcagggtctgtctccagctgccttggcatctgttccaactctctgcc
ttctcctctccctcaaatctttgagttctttgggtagaggtaagtctcagcaatgccaaatcctgtattcacttttagaaactataacagcagaagcctg
ctgaatttcaccttgagagtgtcatagatgtttgcggcttctcaggtctgttcagcatctcttctgaagtgtcctcacttagactgcctgctaaggcttg
agaaagtcagcatttaatctcagcataccaccaaagggatgaaagctactccctatcattttttaaacagctaaatgattcaaattAGAACTGTGAATGG
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGAACTGTGAATGGccagccatattaacaggtgttgcagtatattaatttcaaaaaggacaaaaaggattttaaaggaacaaccttctgcaaat
caagtctaaaactgggtgcaatatgaagtagcctaatgcagtggttttttgtgtgttttgaagactttacatcttttttgtgggcaagagttcaaaattc
aggtcagaaggaatcaaggcagaaatgtcatgttaaatgaaaagagaaagaagagaaaaagaacacatttgtataaaggctggggacatgtgtccttgcc
tcctcaatgtagatgcccttgcaatgaacgcaaccgcatgactgttcaaagggccactgccctgttaaaatgccctgcctttgaaattctgtataattgt
cctaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 31413200 31413201 1001815 0 + 1104685768789 GGTAGACCCAAGGAAGACCTG GGAGTTAGCAGGACTGGGTTC SINE Alu AluYa5 gactgttggcaaagagctcgccttgcaaactgtggcagcttattgggagccatgccacccactcctctcagggaaatgggtttgggtgattgtcagcatt
gggagccatagtgggaaggttctgggctgtgggtaggttgctgcacagatgtgggcatctttactgcctgggagtgccacacggtctgtgtagttctcac
tccatagctaaagctcttggtagacccaaggaagacctgaatggggacccatatgcctccttcacccactgtgttgaggtctgcggatggtggatttgtc
tgcccctggggttcctctgtgccctccccacttgggaccacatgtacccactttacctataaatccaaaaagcatatcgaatttAAAAAGAGAAAGCCCC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTTTTTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGAGAAAGCCCCacctgagtatcaggaagaacccagtcctgctaactccacacaggttgcagttgcaaaggcaattaaagccactgtacag
agcccacttcagcaccactcagaggctgggctggttctgagatccccaaagcggaagcaaccgtcctagcaaagtcttcttttgttaggcattgccaact
acaagtatcacataggtgcttcttaaagtgattccaatgactacggaattcttctactactttctgccacatacatctccaaggcagtaatcaatcaccc
tataatggaatcatctggtttcccaaggttgcaaagtcctcaaggacatctatgtgtccccagtatcagaatggcacatgatcatcacaggacaaatgtg
gttga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 540 220 NA intron:XDH:NM:000379:35/36
0 chr2 11271158 11271159 1001816 0 + 1104685092182 NA NA SINE Alu AluYa5 aaaaagtctactgaccagtctctctacctctagtcttgtcctcctcaaatcttttctccacacagtacacagcgatctatctttaatgtacctctaataa
gatcatccaatttaaagcccttaagtggctagcccattactacattcaaaatttcttaatagagtattcgctatcttgcatgatctacctcatgccgagc
tctgtagcctcattctgaccactgaattcctcatgtccttacataacaaccacattgtgatcttcaggccaatctaacctgatgcctttttcttttttaa
gtttcactggaacgtagccacatccattccttcatgaatcacagcagggctgaacagttgcaagaccatataacccacagaagaAAAATATTTATTACCA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
ATATTTATTACCAtgcctttaaacgattaaaatttgctgactcccactctatactccagaaaacaaacaatgccttttttattttccatcttctatgtct
ttgctcatgctgttctccctaacttagaatgtgcctttgccctacggacctatcctgctgtcaggttagggatgcatcccatacacccaatacatatacc
ctgtccataagtcttatcattctatttgccatgctgtcattagaattatctttgtgctttattattacttttaaacttaactattcaactgtgacattat
tcaaggcaaggactgcatcctgatatttctaccacatataacacactgaatatttagctgagtaaataaataagtgaatgaaaataaaatgctaact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ROCK2:NM:004850:17/33
0 chr2 2518957 2518958 1001817 0 - 1104685073984 NA NA SINE Alu AluY caccagaggaaagacgcgcttcagatgaaagagcaaaagtccgccaagtcagggacgacagaggctggctctaaaacgtcggtgcttctaaggctctggt
ttgattaggaatcacctgggggaggaaccaatgtaataatttctatgttaggaagtcaggcagaggcggcaaggagagcaatggagtggggctcagtggc
attagtctgggcaggctggaagcccgtctagtggaactagcacagcacacagacccagcccctgtctttgggcttgtcccttgctgaccagaggattttt
ggtcaccttgtccttgagcctgaaatttaaaagaaagatgaagtcttcccacgtgcccctcccaaactcgctcctcatcccattAAAAAATACCCGCTGA
GACCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATACCCGCTGAagggctgcgggcattccagggtgctgtgatgtgtggcagctccagagcaaggggagacagtggctcttctcttctcggaa
tggatggggccacccctcggtcattagcccccattctgggtaccacactcaggagatgaacatacctgagctggtgcaaggactgctctgagaggtctcc
acaccctgccatgagaggagagatccagggaactgagcatcctgttcctggaataaagacttctttttttggaagggtggtggggtgaaactcattgcat
ttaagataccaggtgggagaagaacaaaagtttttttagttcactgccctgaacccattttccagaccggaggactcttgatgctgtctgccctgcttgc
ttcg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 9806252 9806253 1001818 0 - 1104685091647 NA NA SINE Alu AluYb8 tgcaaacagctttacctggagtgagtcttgaaatacctcctgtaacatttcctcttctgttaagtaggaatagaaaactacttcccacgctctacgagaa
ttaaatgggggcaatgcatgtaaatgctcaacaaatgactaggaggagaagggaaggcccaaggcagataacctcccctctgttctttcacattcgcatc
tatagtttcacagggtttttttcctcctagtaaaattagatcctgacacatattcaaggaacactctgcagctgtttctccaagaacagagagcctgggg
atgccccaacttcagcccatcaagccccaagtgcttagtcacctgcttagcccagacatgagggatgccataaagaaaagcaaacaatAACACACCCGTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
AAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTTCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAACACACCCGTGcaaagccatttactaaattagtaggggcagggagcatacaaccctgaaagagcgattaaaccttgcatttg
ctccaagcctattccttttccacatctgcatttgccaggtcatctcttcctgacagtcttatcctttttgtgccatggacccctttggtagtttggtggc
tgccaataatgaatcaaataaaataatacatagaattactgtcttaatctgtattctgttgctacaacagaatatcacagactgggtaatttgttttttt
aaagaaaggttatttagctcaccgttctggaggctgggaagtccaagaacatggcaccagcccttggcgagggcctttgtgctgcatgatgatgcatccc
agcaaaggacatggtga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 3696337 3696338 1001819 0 + 1104685041235 GGCAGTGACAGAACTGGATGT ATTTTGCATTTTGTGGCGATA SINE Alu AluYb8 ctcaacctcaacatgagggtgctggggagttgggctaagtcccgtgttaggacccgccatggccgcatggccccgaatctccctcgctggccccgtctct
gtggctcagtctctgctggctccagagcgtggcctggcctgcgcgtcagtggacgtctgttcccgcgtgggggtgttcttgtgggcgggtgggctctgct
gtttcccacgtctagccagggcctgccacccagggtctcaatacatgtgttttgaatggcttcaaagactattaaaagcaagttattattttcaaaatta
aaataatctctttcttttaaacaataaaatacaattttgcattttgtggcgatagggtttttatagctagtgatattttatttttaaatacattCCTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAA
AAAAAAAAAAACCTTCTagccatgttctaattccttccccgtttcagcgtgtttaagcaaagtctcttttttagttcaacctcattgagcagagggcacc
tgtcaggtacagttgacagtacatccagttctgtcactgcctgacttttgaaagtctcaaatcttagcgtcaggagcctagacggggcctcactcactcc
cgcagcccccaaggttgaccgagctgccctctcccttccaggaagcacggctgatgctccgaaggagggaagactgacccggtttctggacttcacccag
ctgatggacatggcatctgaatccgtaggaggaaaagtaagtgggtctctcatggccaaacaagggttgaaggcatccgtgctaagggcacaactcacca
gtgcagagaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 508 191 NA intron:ALLC:NM:018436:1/12
0 chr2 15437005 15437006 1001820 0 + 1104685093183 NA NA SINE Alu AluY acgagaactcaggtcatgaacacacctttctagtgttaaataagaggggtgagctaaaataggagtacaatggggacaagagaggaattgaactcatagt
ctagaaatttcagccaggaagtgacttcggaggtttatcatctaatcaggtcccttgtctctctctcttttttttttttcaaaagacttatgccctggca
tttaggtcccttgtctctaaacaaagtgaaagctacatgaacgagacaggcattacctacgcatgctgaaaattttcagaacttgaatttataggctatc
acatgaatctcttccaacagaagagaaatacacagccttataatcagcaaaaatgaccatgggaaagcgcgctggagaaaaatgttAAGAAGCTGATGGA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGGGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGA
AGAAGCTGATGGAcattcataacatagtttttctttttatattcaagcaaaaaataactgtgccccatatagtgtagtcaatctgtacctgtgataatat
atttggtaaagaaaagaataacaatgcagtttgtacattctgactttccccctccatcttagggaagaatatagagttattctacctggctagatccatg
cagctatcagtgaggttggtagaagaattgaagtactctctgctggcagccaaaaccaagtcaatactcttttcgtagctgaccctgtagtggggtttcc
ctttatgggctataccagctggaggattttctgaacaagcactgcagtgcatcatctgtccagccaggtggatgttttcaaggcgactagagcacagaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NBAS:NM:015909:30/52
0 chr2 49586998 49586999 1001821 0 - 1104685773815 NA NA SINE Alu AluYb8 agaacagaagaatttgctttatagtaaatcttataaacctgttttaatgaagaaagtgagtatctgtatgggagcagattaacaaagaaatagaatagaa
agccaacaaagatacacacacatatgtggaaactggatctatgaaataagtggcatggcaggtaagtaggaaaaggattttggaaataattatggaccaa
tataatgcatagtgggaaataaaacctgatctccatttcacataatagccagaatcaatttaaagtaactggttaacctaaatatgagtcttacaatata
aagaaatatctttgttatttaaggcttgggaagaactttttaaattagacatgaaatacaaaacataaataaaaagtggtaagaatAAAAGAATATTAAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAATATTAAAttttttttccatacaaatacatcatttaataagtgggagtggaggagccaaagtagtaaggaggtatttacaaaa
cctaattacaaactgactagaattctgagtatagaaagtcttcctaaattcataagaaaaaggttagaaaaccaatttaatggtacaaaaaaagatgctg
tatcagcagctcacagaaaagtaaaccctactggccagtaattttatgaaaagatgacaaaatttactcatcatttttatgaaaatgaaaaccaaaatga
gattattattttacaaacttcaatgaaaaatgtttaatgtcccacaatagcaattactggtgaatatagagtaactaggacacttacttgcagtaggagt
gtaaattggta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 66512493 66512494 1001822 0 + 1104685777770 NA NA SINE Alu AluY gctaattgtaaaatccttatccagaatgaggtttgggcaaacaatttgtactactgtaattacattgtaaaagtgtttagtcccttgattgttcagaatt
aattgtataaaggcctagaagttatattaggttcacagtttaaaatggaaagactgtggggggggaggggcacttttcaaaactactgagttgattttaa
gtccgcaaactcaaactatctcattctttaaggaaaatttgtgtgtaggtaatttaaagtacatttttatggtaatctggcacatcatggttaaagcatg
cagtcgtctagtcttcctcctgctttgaagattttggttatgtttgcaaagggtgacttacctgaaccttcttttctcatctgtgcAGAAAACAAAAGAA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCAAAGTGGCGGGCGCCTGTAGTTCCCAGCTTTCTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCCAGGGGGCGGGAGCCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGAAAACAAAAGAAaaagattaccggaaagcaacaatacaaaataaatcctgttgtcaaatatatatatatatatata
ctgaccttttccaaatttgaaaacgtggccgcagagttgtggtaaatccaagccccgttacctctttgccgaagaacccctgaggctgttaaagaccaca
gtcctctaagcgtatttcgcaataaatttctctcagttaaattatacttacacaatttccctcgcagttcatttaaggatcataaacgtaggtgtgccct
gtcggtgtttggtttgacccccacctcccacccacgcatctccctcctacccccgagtcgcgcagatgcctggcgggcctgatgcggggacgatgatcac
acccccgcgagcagccgtcgga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 70651223 70651224 1001823 0 - 1104685778816 NA NA SINE Alu AluYa5 tccacatccttctggggatccttccactgaccaccccaagatgcctgcaaggccaagagaatccagtgagaggtatattggggtggacgggcatccatac
ctgcattgtgggatcagacaaaacacgctgagatggggacaaaggaagtgctatgagtgccactgagaggtctatagggcagtatcagagtccatgggtg
gccctgaccatgtttgaggaatcaagggggcccctgaaaaggtgaggttttggctgagcccttaaaggcaactaggagttaacaggagtcatttaaactt
ggaagcatggaaggttgtttgtgtgtgtgtgtgtgcgtgcttctgagaatatgagaatgcagtaagtgtgggaataattctaatAGAATTAGAAGGAGGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAATTAGAAGGAGGGattttgattgggagcatagctggtgagtagggttgcctcaaccaagtctcatgtctagatatctcttatctt
cctgggacttccagagacatacccgagggcacagtactggttctgactgcccagctgaattctgcaagagccagggaactcagagatgtctcccaaattt
tacattgtttattatgatctcctggggtaaatcattaaacatgttccaggttcttccttatactaactacaaattccttcaaatcattcacaccaccatg
catgtgagaacatgtttggtgtcaagattcccgtacgtgaaagcggcaagggtagagccccgcccacaggatgcgtactcggcattcctcattctcttag
tcactaggttct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 75241408 75241409 1001824 0 + 1104685779790 NA NA SINE Alu AluY tttatttgttatgcaaataaatccaaaataaattagaaaatatggtagttttggactttaaaagctattcataacatggacactgtggaacagttctgac
tggaaatcaaaggaatagaagctgaaataaaaaggaacttgctggggacaaaaaggcaggaataaagaatgattgagatgagaaacaattctgaaagagt
taaaaatacagttacaaaatcggattcagcatcagaacaggtaaattgcaaaaaagcaaattagaaatgaaagaaccagctttagaagttgctccacaat
gaaaaggaaaagaacaataagataaaaaataatgaggaaatagggattcctggacaggagaactaaccaatttgaacagaagtaatgattAAGACATAAC
CAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAC
ACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAGACATAACagaaaaaaaagttccttaatgaataaaagttgggatctgcttacactaagcaaaatcaatatacgtgagagaggggatacat
atccagagatattctgatatattttcttatttcaatggtaaggaaagaattctaccagccatccaagaagctaaacattttgcctataaaggaaaaatat
caggctgggctctaatcttctattataatgccagaaaataacggagccacatttacaaaattatgacatgagaaatcttatagagtgataattgtctacc
taagttgtgctaaggtaacagaaagaacttctcatgaatataagagatcaggaagtatattcacaataccattcctggaaaaataaacaaaaaccaaacc
ccccaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TACR1:NM:001058:1/5
0 chr2 95852180 95852181 1001825 0 + 1104685779199 NA NA SINE Alu AluYg6 attgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgcagcgttatttctgagggctctgttctgttccattgatgtatatctctgtt
ttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggatt
gccttggcgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaaggcattggtagcttgatggggatggcat
tgaatctgtaaattaccttgggcattatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatccNNNNN
TTTTTTTTTTTTTTTTTTTTTTTTTTGAGGCGGAGTTTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGACTCACTGCAAGCTCCGCCTCC
CGGGTTTACGCCATTCTCCTGCCTCAGCCTCCCGTGTAGCTGGGACTACAGGCGCGCGCCACCATGCCCGGCTAATTTTTGTATTTTTTTTTTAGTAGAG
ACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC
CGCGCCTGGCCTGTATCCTCTTTTNNNNNattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtatt
ttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttgttggtgtataggaatgcttgtgatttttgcacatt
gattttgtatcctgggactttgctgaagttgcttatcagcttaaggagattttgggctgagacaacggggttttctagatatacaatcacgtcatctgca
aacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactgtgttgaata
ggagtggtgagagagggcatccct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 46782457 46782458 1001826 0 - 1104685773117 NA NA SINE Alu AluYa5 cttacatctaacgaaccacagagaataatgtctaatatttgctgtaccctttctatgtagtaggtaggcacagttaaacctcaccactatgctgtgaggt
aggtacttttaacaccctccctttacaaacgagtaaactcaggtacacagtggttaaatcacttgcctaagatcatgtgaaggggctgggatacaaatcc
tgtctttctctattataactatgataggaatgatgtattcataatgatcatgtaattctactctctttttaaaggtactaaacccattttaacaaaaccg
ccacactaactgaaaataataatgttcacataatttactttcaaaatacagaagccttctgaattttgaaaatcttttaagcaattaattttagcatAAA
GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGC
GGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAattat
agaatgctaaactactctagggcattcatttaatattttcacctaaatgacagtttgtctctttccaatgacagggaactatcagcactaacgctaacaa
tgcagcatattgttttaaacttttaaataaaagctcacccagttttacaaaatttcatggataaaagtagtcaactcaaacttcttcatccttagaaggg
aacaaatcacaaataatccaaaaaccattaacagttggcacgagaatgctttagaaataaacagtgtgaaagtgataaagcaatctctggactggagtcc
acagacctgcccaccaatcctggccccaccattaaatagcaatttaatcccttcaactgctctgggccttggtttcctaatctgcaaaatat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SOCS5:NM:144949:1/2
0 chr2 42877580 42877581 1001827 0 - 1104685772179 NA NA SINE Alu AluY agatcttgatacttggcatgttggtgttaagatctcatgggatgtaaagacacctggtttggcaacaccccaaggagactgctatttcatgcttggtaat
ctttggagaaccaaaattatattgctactctagcatctaaatttagattattgggtatatattttgaatatgtcttataaagtaaacttctggagcattt
gatattaatagtgaaacttctttacaagaacatgtaactaggtttttcttttttgagatactactaaattttaaaaagttgcttttctttttattctaag
tagttgtggagttcctcaaatatgctaaacaattttcagaattattcatgaaagctattaaagcatccaagtcaacttattagtataacttGAAAAAATG
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAAGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAGTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAG
GCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGAAAA
AATGttccctgtctatatgcgtttttagtagtgagagagttttgtctagttttgaatttagttcttctcaggaacagctgacctgacaatggggcctttc
tctcaacttgtcatttagttctttcggaagaaatatctcagctgtggttaggctaacttaagctgtagagtttgtggggctttttttttttttcttcctg
ctgtaagtttttattttgtttttggactttctacttgttttccaatacgcaatgtgcaaacagtatccttttttactcaaagcttctcggggcttattct
ttacttggctctagttcctgattcttgggggtttacctcactcttgtctacctggagaaatctactcatatgttagttttggagcccggaagaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 83685236 83685237 1001828 0 - 1104685781445 NA NA SINE Alu AluYa5 gaattgttacatattcttgttgaaataatcactttatcattaaataattacagtctttgcaagattttttttactgtttttgatttaatgttcattttat
gagatgtaagtataggtactcctgctcacttttggttcccgtttgcatggagtatattttcccatcccgttattttgaggccgtaaatgcctttaccagt
tagataagtttcttttatgcagtatatgcctgtgtcttgctattttaatttaatttgccagtctatatcttttaagtggaacctttcatacatttacatt
aaaggttaatatttatatgcgaaattttgttcctgtcataatgttaattgttacatagctgatttgcaggctcaattttataaatgtattgaaaGTCATG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGGGTCATGgagttttatactttcatgtttttttatgatagcatcaatcttttctatgttaggaaattttt
gaacatttcttgtaagttttgtctagtgatgatgaattcccttagtgtttgtctggaaaaaattttggttctacttcatttatgaaatttagtttagcag
gatttaaaattcttggctgaaatgtgtttttaagaagactgaaaataggaccccaatctctcttgcttgtaagatttcttttgaaaagttcatgttttgt
ctgatgggatttcctttataaatggatgcttctctttggctgcttttagtactttttccttcatgttgactttagatagtctgatgactatatgccatgg
tgacattcattttgcaatatatgttccagaag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 84443657 84443658 1001829 0 - 1104685781605 NA NA SINE Alu AluYa5 ttggctataggtatttgactttatttctggattctctattctgttctattggtctacatgactatttttatactagtaccatgctgttttggaaactata
accttgtagtataaagttggttaattgatgccttcagatttgttctttttgcttagtattgctttggctatgggtgcatatatgtttaggatagttaggt
ggtcttgttgagttgaagacattaccattatgtaatgcccttctttgtcttttttgatctttgttggtttgaagtctgttttgtctgaaattaggattgg
aacccctgcttttattctgatttctatttgcttggtagattttcctccatccctttattttgagcttgtgactgtcattgtgtgtGAGATGGGTCTATTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGGAGATGGGTCTATTGagaccattaggtcttgctattttatccagcttgccactctgtgcctttcaaatggggc
atttagcctgtttacattgaagattagtatttatatatgtagattcgaccctgtcattgtgttattagctagctattatgcaggtttgtttgtgtggttg
ctttatagtgtcactggtctgtgtaactaagtgtgtttgtgtattggctgataatgatttttcctttccatatttggtgctcttttcaagatctcttgta
aggcaggtctgctagtaacaaattccttcagcatttgtttatctgagaagaatcttatttctcccctctgaggaagcttagattgactggatataaaatt
cttgattgaagatttttttccttaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 112163907 112163908 1001830 0 - 1104685404900 NA NA SINE Alu AluY ccaagaagccccttgacagtgtgcccggctggtgagaggattctttgaatgatgtctgcacactgactttctcctaagcgtagaatcactgtcactgaca
aatgcagactggagctggggtgtggtgctggcaactgaaatacttggaaagcaatgctgtttgtaatcagattgtccagcctggagaacggctcgtagaa
aagttccaaaccaatcaaaatacagacttctcttgatgggtacaatggttgcattcctgggaaattcagtgtattttaagccatgtaaaaaacaccccgt
acaatgtttacatataaaatggaattaggttccaggctcaggtaattaatagatttttacccatgaggctgtcaacaaggatgtttGAAAATCATTTGGG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGATGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAGAAAAAGGAAAATCATTTGGGtgtgggatgattctttgttgtcagggattgttctggatttcttactgcatctgccaaattctgtcagtgtc
ccttccctgtcatggtgatgacagaaaaggccctactgattttcgaagtttctctgagggggcctcctcccacccctgccctgagaaaacccacttgcat
gaatgaaacattttgtagagcatcagaaagcagactgtacctgccatcatctctgtttgctaaagaggtgcttctctctttcccactgagaacacctgac
cattgtaaaagtccagaaacttctgagggtcatccaaaattagccctttgaatcacaacatgttacaatggtttttctggacaggtaatttttttcccct
atattgcttgaaatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 97948590 97948591 1001831 0 + 1104685755767 NA NA SINE Alu AluYa5 atcgcttcgtacccctcccatctaccctaagaacaaagagcttgtaaaccaataaattgggtggaggctgagagttccgggctgtgagcaagcctctgac
actctggtcccctggacccaccttttaaactcttattctgtctctttctaactcctttgtctccgctggactcggggtacccgccaggtggtgtggggct
ggtttctccaacatttttaaaacaggcactactgcatagattacctggcacataatagctaccacttactaccaagggccacgctgctaagcaccaagtg
gacaccaggaatgatgaatctggatggctgtgacaagccccatggctgggcaccaattcatctaatctcacaaacagcacagattacttAGGAAATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
ATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGGAAA
TTTTTatgaaattagggaatgtgtaatgaaaattactgctcctaaaaatctgaagaaattctcctgtgaatttagattgtgtaaaattacctactcctag
acaggctaacttcaaaagctattttctacctttcttttgcctgcccatggagaagtgatttaaatgtaaccctgaaattcacataaaggtagaactagat
ggcattagtcaattttcctagggtggcttttcctgctagagctaaaaatttgagtagaaaaagaacagtaatgcaaggataattcagtaaaagagaaagt
aagcaaagcctagaaacaaaaaaattgaacaaaagcaattttttaaaaaaaaacttaaattgcaaaattatcaaatttatttgctatcattttg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TMEM131:NM:015348:1/41
0 chr2 105468002 105468003 1001832 0 - 1104685754240 NA NA SINE Alu AluYa5/8 tattaacaatatttaatcattaagacacaacataaactcagtaaaaaagggcaccagccttacgtggacatttgataaatttccacatcaaggccagatg
tgatggcctcatgcctgtaaagcattttgggaggctgaggtcggagggtcactttagcctaggagtttgagaccagcctgagcaatatagtaacaccctg
tctctataaaaagaatttttaaaattcaccaagcatgattttgtgtacctgtagtcgcagctacttgggaggctgaggtggggggatcacttgaggctgc
agtgagcagaaactcagcactgcactccagcctgggcaacacagtgagaccctgtctcaaaaataagagaaaaaactccagatCCAAAGACCTGCATCTT
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACT
CCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAGACCTGCATCTTcccctacacaatcaaatcccccctcaacataggcaca
atgctgacttccatcaccataaagtaattttgcctgttctcaaaatttatgtagagggtatctttcatgccaaacccctatgaacctcagtagggaaggc
tacaggttcaagaggctgacgaagagacccagagccaggaaatgagacatggggttttatcaggggcttaaacacaggggagagtccagtggcggggggc
caaggcaggaaaactgcaagcatctgcaaacatgtagtttataccgcattttcacttagcaccctcctcccactgacctccacctgtcaaccaccttcat
ttaacccaaaactcagggcctcagtcccctgtaggccaagacagga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 173230418 173230419 1001833 0 - 1104685153244 NA NA SINE Alu AluYa5/8 caggcattcctttatagcaactcagaatgcgctaagactgtacagatttccttcagcctcaacttcttatccttgaaggtaagaataatgctttccttct
ggcatagggagagcatctttcacatgggaatttcatctcctgcttttaagaaactgaagaaaggtcagagtgatcttcttgcacctgctattgttcaagt
gcctttaacttaaaatagtcaatatgccagagcaagatattttggggtatcatgcttttaactccttcagtaattgtaagaaatctatgagtccataagt
gtatcagattttatctgtaaattaatattaaataatacaacctgcacataataaaaaccacaaattaaaaaatataagcatcatttAAAAGCAGTATCGA
TTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGA
CTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTATCGAacacttctggtttctggttcaatatgaaaagagcttggaagtcatcattc
tcatcctcacaacaagaaataagctgaacaaaccaaaaatcaacaattcttctgaccaggcacgggtggctcatgcctgtaattccagcactttgggagg
ctaaggtgtggaggtcacttgagcccaggagtttaagatcagcctaggcaacatagtgagaccccatctccatttaacaataataataaataataaaaat
aacaaaacaaaacaattcttcttagatccatcagagaattgaggtcacagggcaaaccacctcccagaaaatttgcaagacaggaggatgtagagaatca
caacttaccaagaacagaagcccagtaataaaaggc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 148366543 148366544 1001834 0 - 1104685264598 NA NA SINE Alu AluYb9 aaaaaaacaatagaaaagaaactaccatatcttgagttatggtatgatatcaaagaaaaacagtcacaccaaaaaaaaaaattattaaaatactattcct
ttttttctaactatgtatctgtgtatgaccagatttccttcatatgcttcaatcaaaataacatatcacaaaaactgaacggagaaacagatacaataat
ccagttttcttctactacaacaatcattaagagactgtaattttactaattttttgttttggaaaatatttttcataaaaacttgttctttactaacaca
taatggattattattgctattttaaataagttaatatttaaacattttctttaatttttgatatggtaaatattgatatatattactatttAACTTTTTT
TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCT
TGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
TTTTTTttggggtctttaatttttaagagctctaaagaagtcctgagactaaaaagtttgagaacagtggttctacaatatactagcacagagatgtagt
tataagttgccagtatttgtgggcagtaatggtgccatggacttcctctcaactgtggaagaaattatagcatgaactgacagtgcaaactatgttctgg
taactccatctcaaccgtgtataaaagaatgggcccagcacggtggctcacatctgtaatgccagcactttgggaagccgaggcaggcggatcatgaggt
caggagtttgagaccagcctggccaacatggtgaaaccccttctctgttaaaaatacaaaaattagctgggcatagtggcgcgcacctgtaatccca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ACVR2A:NM:001616:1/11
0 chr2 153868931 153868932 1001835 0 - 1104685030615 NA NA SINE Alu AluYa5 attggtggttctagtccccatgaggctgctgtgagggagtcctatttatacccacccagtggggtctcagtttaagcatcaattttcaatgaattggaga
atacttgagtaacttcttccttctcttatttgtcctagcacctcaggctcaaattttatcctgttccttgatggtcaatcaattttatttctttgttgcc
tcaatccaattaagttcatctataggtggaatctgcaggctcagcagagaagcagcatccaatccttactaatttctacaaattgccctcatgtgaagct
gacttaggcatttttgaatatctacttcccattctattgacccttggtaaatggtgtgccatagttatttgtctagtctggactcAAAAACAGAACAGTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAACAGAACAGTGtctcttgctcacatttactaatggtggtggcatctgataatgagtaatggtccagtctaccttaccaaccatataga
cagtgagccagtcccccaccaccccagtgcatgcccagagaccccagtctccaacttgaatccacacaaatcttatgttggacctggcaggttcttctga
gaatagtagtttctgaaatggctgctggcattgtactcaccggcaatgtctgaagattctggcctttataagcaatttcaaactgtcttgatcacaattc
ctacaaaagcagcaaatctcttggggtatctagtctcaggggtgttagaaagaggctgtgaattcctctatctatccccacccctgccaaaaaaaatctt
gacaaaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 154460841 154460842 1001836 0 - 1104685030717 NA NA SINE Alu AluYa5 tatgtatatacaatttacatcttcatatatatttaatatttatatattcagattaaatgaaagatatatttattcataatttacatattgatatatacct
attaaatatataaaatacaggagaatgagaacaaatgtaaaatcaactttagagttttaaaataaatcacacaaacaacattatattatagtcagaaaat
taagcaatgtaaagttaaataataaaatggtaatcaaaaaataagtgaaagtagtcaggacttaaagaaaaaagacaaaaggttatcagtctttaaagat
tagcaatataagtggtttttccttatacaattagttttctaaatcgaaagtggcaagttttttttaatttaggaaaaaacataaaaATATAAAATCATCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCAT
TAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATATATATATAATATAAAATCATCCtaattccagaaacaactatcctgttcttactcgcagactattatttaaataattatatcataca
aactattttatgattatattctctttttacttaattgtgaatttcttgtgtgacaatatctttttttatcattacactgcaagatcactgattaatatcc
tgttgctatggcatgccatcatttacttattttctgaatataaattatcatcaaatatttgtggcaaaaagaagttactgtgaaggtccttgtgcatata
tcttctgccacagcatgattgtttccttaggataaaatgcccagaactgggatttctgggtcaagtagcatgagactgttaaaacttgttaaaccatatt
ttatgaaactgatgtacccaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GALNT13:NM:052917:1/13
0 chr2 137893418 137893471 1001837 0 - 1104685267320 GACTGCTGGAGTTCAGAGTGG AATGGGATACAAGCCCTTCAT SINE Alu AluYb8 gacaggaggcagacaaatcttaggcagacagggacaggtccccagtgaaatctgaccttcaagctgaagacagtcctgggtaaattctcggaccagattg
agaacctctctgactgtgtgctgtgctttccaccgatcgatccccacccttcacctattttacatatacctaccctttcctaattggttttctacactgt
tgtgcccacctttgagtggtgcctttgttttagcctctttttgcatactcaaaccaatcagtacacacgccccattctgaacacataaaagccctggacc
cagccacactgagggagagatgacctgacttcaggtggggggcaccttggcatcccatctctgcagagagctatttcatcactcagtaacattatNNNNN
GGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTC
CGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNctcaggacccaccaaaagtgggggctgaga
gctcaattgcagtggctacaggataagcaccagagtacaagccaggcacagcctggcagactgagtagatggggtatctcctgcagcaaagctggcaaag
gggccaagaaaaatcctgcatcaaaaatgtggtatagctgggcatggtggttcatgcctataaacccagcactttgggaagccaacaggggtgaatcacc
tgaggtcaggagttcaagaccagccagggcaacatggtgaaaacccatctccagtaaaaatataaaaattagctaggtgtggtggcaggtgcttctaatc
ccagctacttggaaggctgaggcatgataatcacttgaacccaggagacagtggttgcagtgagc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1963 1850 NA intron:THSD7B:NM:001080427:13/27
0 chr2 185710025 185710026 1001838 0 - 1104685650594 NA NA SINE Alu AluYa5 tgaatacctgaagaatgttgggagctaagtcagtattcgtccacatctgaagactgacaaatcatttcaagcaaaaagaagtatgtaatgtagaatgaca
tcatattttatgactcttttatcattatgctttctctcagggaacttctttagaaaaaccgtttccccagagtaagtatatttccatcaaacagaaccca
ctgaaacatgatgaggacaaaggctacacctcaatttaataaagatgcctaaatatacaagtcagacctggatattacttatgaagctgcatatatatta
aaacattttaagctgtggcatttaatacagctaacataaaaagtgataataaactggtttcattgataatgctaatcattttatagttAAAAGATTAATG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTAATGgtaaaatgttaaaaatgataaaagcttcaataaataaagagtaaaagaggttaat
gtagtggtatagctgaaaattcaagaaaagaaggccgtaaagtggaggtttaaaatgtcttttgttttctataaaaaaaaaccacgccattaatatcaag
gatatatcaatctacaaggaacaaaagtgcctattattggcttttcagacaagatagagtgcttaaagaacagaattacataaaaataaactttcaattt
taataaatgtaaatatttttatttattttttggaaaaggaagcacagtgatctcttagaggaaacaagatggactaagtaaagtgtatattttaggaaga
tactgtagtgtggactgtcaatatccagtgagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 181130171 181130172 1001839 0 + 1104685649600 NA NA SINE Alu AluYa5 atgaacaaaacctccaagaactatgggattatgtaaaaagactgaagttacgactgattggggtaccagaaagagatggagagaatgaaaccaagttgta
aagcacacttcaggacatcatccaggagaacttccccaacctagcaagacaggccaacattcaaattcaggaaatccagagaatcccagtaagatactcc
acgggaagatcaaccccaatcacataatcatcagattctcaaaggtcaaaatgaaggaaaaaaaaaatgttaaggcagccagagagaaaggacaggtcac
ctacaaagagaagctcattagactaacagcagatctcccagcagaaaccctacaagccagaagaaatttggggccaatatttaacattctAAAGAAAATA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATAatttccaacccagaattttatatctagccaagcaaatttcatatctagtttcata
accaaagaagaaataaaatcattttcagacaagcaaatgctgagggaatttttcaccaccaggcccgccttgcaagagctcctgaatgaagcactaaata
tggaaaggaaaaaactggtaccagccagccactgcaaaaacacactgaaatacaaagaccaatgacactgtaaagaaattgcatcaactagtatgcaaaa
taaccaatcagcatcatgataacaggatcaaattcacacataacaatattaaccttaaataaaaatgagctaaatgcaccaagtaaaagacagagactgg
cagattggatagagtcaaagctcatcagtgtgctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 192690942 192690943 1001840 0 - 1104685652397 NA NA SINE Alu AluYa5 ctgcaaagtggttgcctgttagaaacacaatccttacagaactctcaaaaactggcagttgctgtaggtagtcaattgaagaggatcaaacacatctgtt
ggcatatccatctgttaccaaaaaatctctagtctaaaattcttgctaaaaaaacttccattttgattagaacatcactgagaagcttacaaaattgaga
ctgaaagtcattacctttatggagtaaatcataaggaaataaaaacaaatgtctctcaagtagattaattttattccaaatctattttttttttaaatta
atggaactgttaccagtggagggtatccagattcttggcatttggaacaaagaattaggtaaagcccacaaacaaagcaatgAAAGAAAAGCACCGATTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAAAGCACCGATTTttgaaacaaaagtacactccacagagtgggagtgggcttgagcaagtggttcaagagcactggttatagaatt
ttctggggtttaaacaccctctagaggtttcccattggttacttagtgtacaccctatgtaaatgaaatagtgatcagcaatcagaggctgaagtgatgt
tacaaagttatacttctatgcaaatgaagacttggcctgggaccagtctgattggttgtgagatagaaaccaatcagaggtcctttcatctgccatgcag
aaaagtggggggtggggaggtggaaaaagagtcacgtatggtccttttgttacttgggcatggaaagttggagttttcattttggagtttggagttctag
gaagctagc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TMEFF2:NM:016192:4/10
0 chr2 235211498 235211499 1001841 0 - 1104685077174 NA NA SINE Alu AluYb8 ttggaacagggaaaatgtaatttaatgtattgctaattacagaaagtggttaattacctaaaaaataagaaaggactgtaagaggtcaagaagcaggtac
aaaggagcagctacttattgcaggacaaagaaagtggataacagaggaacaaaagaccaagacagccccaccccacaccaaggctgagattcagacctca
ctgaagagagcatggctacagcaggaacacacagcctgacatatgcaagaaacttggcagaggatggccgggcacagtggctcacgcctgtaatcccagc
actatgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacAAAAAAATA
CTGAGGCAGGAAAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGAC
TCCGTCTCAAAAAAAAAAAAAAAAAATAccgggtgtggtggcgggcgcctgtagtcccagctactcagaaggctgaggcaggagaatggtgtgaacctgg
gaggcggagcttgcagtgagttgagactgcgccactgcactccagccgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaag
taaaaaacttcgcagaggacacaggctggtgctggtctttagaagctttagaagcagctgccattgacagaggttgtgggcaggtgggagtggctcagaa
gtggccactggtggagagtatggctagagagagttcctctgcaaaggtgctgggctcctgtgttagtctgttttcatgctgctaataaagacatacccaa
aactgggtaatttataaag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 4969132 4969133 1001842 0 + 1104685538953 NA NA SINE Alu AluYb9 ttgggaggctgaggcaggaggatcacttaagtccaggagtttgagagcagcctgggcaacaaagtgagaccttgtctctacaaaaaataaacaaaattag
ctggtggtggcacctgcctgttgtcccagctactcagggggctgaggtgggaggatggcttgagcctgggagattgaagcttcagttagccatgatcatg
ccactgcgctccagcctgggtgacagagagagatcctgcctcaaaaaaaaaataaaaataaaaaagaggggccgggtgtggtggctcaggcctgtaatct
tagcactctttgggaggctgagactggaggatcttttgagcccaggggtttgagaccagcctgggcaacatagggagaacttgtctctattAAAAAAAAA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAG
TGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAaatgctcatacgtg
gttggcaggagtgtaaatagcctcaaccaatttggaaagcaatttgccaatactagttaatataacgatctagatagtgggcaacccggattagcctttt
ccagatatttgcagctgggaagctctcatacatgttcacagagatacctgcaaatgttcatttcagctttttttttctcaatggcaaaaaactggaaata
gcctatttgtccctcaataagagaactaataaatacatctcacaatatacaatcaaaggaatactatgcagctattaaaatgagtgaacttatcaacatg
cataaacctttaagacataatgctgagttaaagaggcaagttgcagaaaggtacgtaaggtatgggactatttatgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 212874682 212874683 1001843 0 - 1104685657739 NA NA SINE Alu AluYa5 aatcagcccaaatttaaatcagatgatattccaactaccccacattagctaatggttataatgagagtgtatcaaaagcaacaaggcacagtattggtca
agtatgtcttatatccttagtgacataggatacccctgccaatgttacccttctcaatagcgttgcatttcttgaaagtcttttatcttaaaagttgtat
gtggattttcaactttatgtttttattttaaaaaataagatgtgatgttatttttcaaagctcaaaactatgtttaccctataagttacatgcctcctgg
gccacatattcatttttaagaagcagagaattatgatgacatatggatttcaggacctctgagggaacttgcatggggggaccattAATATTGTATGTGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAATATTGTATGTGCaacggtaatgcctagaagtgtgtggtgtgtaatctatgaatccatatgcatcagtactgacaatattaggacctgttacaa
aagttactacactggagagagttccaaatttgtcatgtttaccaagatatgtccaacacctagcaggatgactggtcaaattaaatgcttaattaatatc
agttgattgaataaactatttcagagtcacatgatataacacagattaagacaaatttgtgagatgtattacagtgctcgtattttgttcagtgagatat
attggtctctaatctttaattcaattcattttaccctatttaaaattttcaggttatacattacagggaattgggatatgcctaatgaatacatgtgatg
cttaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ERBB4:NM:005235:1/28
0 chr2 217889017 217889018 1001844 0 + 1104685659192 NA NA SINE Alu AluYb8 tacgcacaaaaagtccaagctccactggcagaggaacagagtggcatgacagagaaggagagaaaagaagaagcatctgaatgtcgagagaagttcagcc
agggacagttggagaggagttcagctggggatggttgaactccagggaaagattaccttcccactgcatcccctttccagctccccatcctgctgaagcc
actcccatcactcagtaaaatcctctgcatacaccacccttcaatcctttcatgtgacctgattcttcctgggcacaggacaagaaaagaattcaagatg
cactgggtgcaggaacccagaaaggctgtcacactgactcttcagtgagttgtttaacactgaagccatccaggaatggcaaagcAAAAGAAAGAGCCTT
TTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCT
ACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGG
AGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAGAGCCTTgtttgtaacatatgctttctggggctccagaggtctcaggcaaaccctagatgctgccacaggctggtacgggg
tttgtttatgccaaatgcccaaaggtactcaccccagctgctgcacccactcacgtgtgtactcctgctcccacaaggggttggagggtggcagccgagt
aaacgagccacacccttgtcacaagtcccaccgaggggtcaaggaactctcctgtctcagcaggggatcagagattctgggagatactgaagaaaatgga
gctcactttccagacattaaggttttaatgacacttttagacatgagaaagcaggaaggacttggtgggcaagaaagtcaaaacagagatttgacaaaga
cccatcttttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DIRC3:NR:026597:12/13
0 chr2 223591129 223591130 1001845 0 + 1104685197127 NA NA SINE Alu AluYd8 caccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacaccacacactggggcctgttgtggggtgggggga
agggagagagatagcattaggagatatacctaatgtaaatgacaagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgc
acagtgtgcacatgtaccctagaacttaaattataataataaaaaaaattacttgtaaaaagaaaagaaatccctctaatatctaaacagtggttttaaa
acatgttgttaagaaattgatgtctgggttccactttgagaaattctactttagttggggcatgacttgggcatcaggatgtgtCACCTGAGGAACTCTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCT
CTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGGC
GGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACACCTGAGG
AACTCTTctgatgcataggctgggttgaaaaccgctctggtgagttgaaaacatgactgcaaattatttgatacttcttccatcaaaaggtggatctaat
tccccttgaattaggatattaagtttggcttaatgactcctttctaatcaatagaatgcagttgaattgtccctttgagactttcaaggctggattgtaa
aaggcaggcaatagagcattcactcttcctgtcttgctttgtgtttctgtatctctgactctttccccatgcctttgaagctctgagcaaccacataaga
acaacctatgcaaaagccgccatgtgaagggattgcatagagagacagcctagaggtagagagagatgtccaaagactgccaggtattcca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 228937988 228937989 1001846 0 + 1104685497715 NA NA SINE Alu AluYa5 ttaattttaatgaagtccaatttatcaaattttttaatggatcatgcttttggtttcaaatctaaaaacacttttctaaatgtaaagtcacagagatttt
ctgctatgtattcttctggaacttttattgatttacattttagatttaggccaacagctatttttagttcatacttcatacaaaaattaactctaagtgc
attgcagtcttaaatgtaaaatataaatctgtgaaaccaaaaaagaaaaaaacataggaaaaagtgttgagtatatagagctaggcttagagttcttaga
gttaatgccaaaaggcatgatccgtaaaattaaaattaatgaactggatcccatcaaatttaaaactttgctctgtgaaagactctgttTTCATCCTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAATTCATCCTCTTagacaagttacaaacttgaagaaaatatttgcaaatgacatccaacaaaggactagtgtatagaatatataaaatttcaatagaa
aaatgtccagttaataaatggtcaaatgacataaacagacatttcactaaagaggagagacagatggcaaataagcccatgaaaagaagtttcggcatca
ttagccatcagggaaatgcaaattaatatcacaataagatattactacacctctgtcagaatgtctaaagtaaaaaataatagatataccaaatgttggc
tggaattcaaagaaactggatcattcattcattgtggttgggaatgttaagatgatatagccagtctggagaacagtttatcacttttttaaaaaactaa
acat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 223884295 223884296 1001847 0 - 1104685197029 NA NA SINE Alu AluY tagcctgggagacagaatgagaccctgtctcaataaatgaataaataaaatgaaatacaatagaataaaagtgttcagaagcagcttttaatattctcct
tagatatagccattgggattcatttatatgaatgcatatcagaaaccaggcagttggagaccaggcgtgtgctcataccttgcctattacacatgtctag
tgaatgaaagtttataataaaagatggatggtttaattttcctacttttagcgtatttgcaaatgtagaaaatcaaacttatttttggcaaatgcaccca
agggtcacattgaataataacatctaatatagactttcaagttagtgtaggtttttttttaaaatgatttcttcaaatagcagatTGGTTTTATTTTCTT
AGGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAATGGTTTTATTTTCTTttacagagttaaactgatatgtgatttccccctttcacaccgctgacatcttgcatccacaaaacaaaaacaatctt
cctttagatgtaccagtgaatttggaaaacattttttatactcacaagagggtcacgtatagcaagactaattgataaagcataacttagatgttaactc
attagggaacatttgcagcacatccgctgccaaggggatgcctttaggatgttggatcagagaaactattgaactctccaatttaaccaggaggcgtaat
agctctgggacaattcctgctttgcaaacaagatggtaacaaagaatgtattgaattttgtgaaatctgtaagaaatatccattcaagtaagcaatgttt
ggcaaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 214909886 214909887 1001848 0 + 1104685658240 NA NA SINE Alu AluYb8 ttagaaccaggataactgatgcaaattttcaaacatgtatataaatataatagccagtattacaacttaaggcatttttgaatactttggagaaggctca
ttaaagatgatataaatgtaggaaactacactgtacacaagactattcaatattagaaatattgagccggataaaggctgaggtgagagttacagtttga
gttagatagctgtacagtttgggttacataaaggaatatcaaatgcatagaaatagagtgtttttattgtaagcttttacttaaagaaagtaatgtaatg
atatatctctacaagtaagatttaaggtaggagaaagtttttataaatattcagaaaggattaatgttagatattaattttctaacagtaAAAGACTAAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAGTACAAAAAATTAGCCGGGCGGGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGACTAAGagctaggagttctctgctgttgaatgaggcttctagactacctcacttcttccaatataactgatcaaa
gacaagtttacagagacagaaaattgaagcaaaacagtcacttgcctgcaggtacttgacgccagtcccccatttctgaaagaacaaccttatcatactg
ggactccattggaacttctaagaaatcatggtgccaatcctttctgtatgaataattgctaaggttattgctgtgtccaaactaattttttctctttcgt
agtaaagttctctcactggaaatgggtaaaagagactacaccatttaaagaaaaaaagagaaggtttaggaagcttgttgtaaaaatactgaagtcacaa
acttattaagaaatccactcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SPAG16:NM:024532:15/16
0 chr2 220644640 220644641 1001849 0 - 1104685198018 NA NA SINE Alu AluYa5/8 gcctaactcggttctaggcttggctttctgtaaggttggttccatttcctgtgtaagctttcttagctgccactgctgcacactccacctctcccttccc
tcgatccctgtagcacttacagtcacagcttagcattgagttattatgtggtaacacaggctagaaactgccagaggcaagagaccatggcttattccct
tctcacatccgcccagtgcactcagaataaacactcagcaaatgctcctccattcccagacagaaaggctcaagactcattcacgtataccttgttgaaa
atcaccttttaggcccctttcacatatctgttgcaaagagcaaaaaagaattactttccgggtttcctttctcctatttcctctCCAAGGCCATTCTTTT
GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CCAAGGCCATTCTTTTgtttatgtgaatttgatgtaaatttgatgcccagtaaattgatgcccagagtacctaacatttcaagagatcagcatgacatat
gcatagatattatgcgtcttttgtgtgttgtcattcagcaaatgtcaatggcttttcagaataatagacaatcctgagctattgccacacctgcacatgt
actgccaaaaaccactcagttctagaaatatgcagaaaatctccctaatgcctcaggaaatgaagggacatacaaatatggcagctctcatcatttacct
catcagcacttagctcaattaccatcttcaaatcaaaaagcactgaagcttccaaacctggagttcgactttaaggttcctcatcaagaaaattctccag
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr2 226461935 226461936 1001850 0 - 1104685498487 TGTTTCATTAAAACCAAAGGCATA TGAACATCTACAGTTCCATGAGTTT SINE Alu AluYb8 ttagtagttttttttaatttacaatgatttgatagaatgatttgcatagattttaaactatcaacaccaaagcatatttccaattcaaggaaaatgtata
catatagaatacatattatgtgttatgtctagacatgcacacagacatttgagcttggacaaaagcaaggtcatgcctgtttaaagcgattaatctagat
gatgtttcattaaaaccaaaggcatatgtaacatttgtaataaaagccaaacaaacaaataaaaactttatttgcctaattacatctgagacattctact
ggatactgagctaatagtggtaaaaaaggcagagatggtctctgccctcatggagtttataatctagtatgaagagagagagacttTATTGTTGCTTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGA
AAAAAAAATATTGTTGCTTTTTacaggacggattattacaaattacaggaattgctatgaaggaaagcagaatataaactcatggaactgtagatgttca
ttgacagagtggctttagacatcatctagtgatcaaatgtgatatttcacaaataaataatatattatttgtgatataattgtgatatagtctaaggtga
ttatgggatctgtccaaggtcacataactatagggggcatacatcaaataagacatagagaaaattgacagttgattatttttattgcaagaagagtttg
aaaatttttaattaaatttttattgacataatagatgtacataattctggggtatatggggtaatatcatactttcatataatttataaagatcaaatca
gtgtatat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 598 277 NA intergenic
0 chr2 231988058 231988059 1001851 0 + 1104685015516 NA NA SINE Alu AluYb8 gcccagcatggtggcacatccctgtaatcccagttactcgggaggctgaggcatgagaattgcttgaatccgggaggtggaggttgcagtgagccggcat
cacgccactgcactccagcctgggccacagagtgagactccatctcaaaaacaaaaaaaaaaaaaaaaaagaaaaagaaaatagagggtgtctgataaaa
atgtaccttctctagtgtgcagcacagtaaatccagcaccccagagatgtcctgcctggctccctggaacccatctgtgcacatgatgagatgtcacctc
tgtaattagcttaggttacatggcacaattagccttaaaatagggaaatattctgggtgagcctcatctaatcccatgagaccttAAGCTCTCTGCTTTT
CACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTAC
TAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAG
CTTGCGGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AGCTCTCTGCTTTTctcccactggtggcagaaggagaagtcagactagaagcagaattcacatgccattgttgacctgaagactgagggacaaggtggca
aggaatgatagcaaattctagaagctaacagcagcccctggctggcagccagcaaggaaatgggaacttcataatgaattctgccagtaatagaaatgag
cttggaagaggaccctaaattccaggggagggatgcagctggacagagaacgtagccatgctgtactggtctcctgacctgtgggactgtggcaaaataa
atggatgttgtgttaaaaagaaaaaacctaaacactcagaaaaaaagaaaaatgttggcagtacaaagagatattgccagaaacacaaatatagtgagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 22654130 22654131 1001852 0 - 1104685099282 NA NA SINE Alu AluYb8 actcattttaactgcttcttagtagggtagagtataactagcccacaactgattcagctcttctattgctgagcattgagtgttcctagcttcactgtaa
ctgctgcagggaatgccctagagcacaccccaatcctaatatgatgcttggtttgatgatctccttcacatgaacacaagctccttgattttagggacct
gcatgttgtgagtccacagttctaagcccagcacatgggccatgggagtattcagtaaggattgtgggataaaacaatgatgagcaatgaaataaaggaa
tggtcattaaactaattcaggtaagcaataaaaaggtgtgaatgctgttttcttatttacatagtccctggaacaggaaaaagagtaagataaaaNNNNN
GGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAG
CGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGATACAAGAAAAGATGGTAAACTTATGAGTATAGCTCTAACACATCATGGAGGAAAAATTACCAAA
TAGCCCCACCAGCTGGATTGCCAAATGAATTTAGTGATGACACAGATGTTTTAAAAATCAAATTTAAAATGACCCGGTGCAATGACTCATGCCTGTAATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNttccagaacttttatctgtgct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 33265570 33265571 1001853 0 - 1104685130910 CTGGAGGAAGGAAAAGGTCTG GCTCAGCTTGTTCATTTGGAG SINE Alu AluYa5 ggtaaaaaaaaggcaaaggtgcagaatcctggatattgtaggctactatttgtgtaataatcggaaaaaagaatacatgtgtgtgcatgcacttgctcat
ttacacataaaatagggacagatacccaaggaactgataatagtgcttacttcctggagggaagcttaagtggtttgaggacagggtgggaaggcaattt
ttatttttattttttaAAAAAATAGCTGGGCTTTGTGGTGTTTGCCTGTAGTTCTAGCTACTTCGGAGGCTGAGGCAAGAGAATTGCTCCAACCCAGGAG
GCAGAGGTTTCGGTGAGCCGAGACTGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGTGACTCCATCTCAAAAAAATAAAATAAAATAATTAAAAAAAA
TTTTAAAAAATAGCTGGGCTTTGTGGTGTTTGCCTGTAGTTCTAGCTACTTCGGAGGCTGAGGCAAGAGAATTGCTCCAACCCAGGAGGCAGAGGTTTCG
GTGAGCCGAGACTGTGCCACTGCACTCCAGCCTGGGTAACAGAGCGTGACTCCATCTCAAAAAAATAAAATAAAATAATTAAAAAAAAtgtatttttagt
agagacagtgtttcaccatgttgggcaggctggtctcgaactcctggcctcatgtgatccgcctgccttggcctcccaaaagtgctgggattacaggtgg
gagccaccatgcctggctggaaggagatttttctcactgtatacctttttgtatcttttgactttttaatcatgtggatatattatctcttcaaaaaata
agta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1422 1234 NA intergenic
0 chr20 13652161 13652162 1001854 0 - 1104685541024 NA NA SINE Alu AluY tttagtacctggtggaagtaaaatatagtcattatctaaggatatagaccttgcttttcaaaaatatttaagatataatgaatttggcacactagtgttt
tcagtgtacagttcaagttctgtagttaaacaggacaaaaacattgtaaaccagatgacttgggtacatttataacatttttgctctaggcaatcccata
gagctaaacttatgtgccttcaaaatgtggaggaaatgagttcattgatgccagacctggcgtttggctcagattaggtgccagggtgaatgttagagat
cttttataattttttcttctatcttttataattttttctttgatttccttctaaattgcaaacttggtgtcaaatgagagttttAAAAATATCATCTAGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGTTCAGGAGATCGAGACCATCCTGGATAACACAG
TGAAACTCCGTCTCTACTAAAAATACAAAAAAATAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAT
ATCATCTAGGtgagcacattaatgagctgaaaatgaaatgaaatattagaaaaatctgctaattttccagtggtagctggtagaatctgagtcctagtgg
gcttccctttattttttgtaattttacaacattgtaaagcagcaccagaatgtggtagcctagagggagattaaccctagagggagattatccttaacag
actgcatttgattatgggcaagtgatgcaggaacttggtacaaaagagtaaatcactagggcgcttaccactcccatctggtcagtactgagaccacatc
catctgccctccagtgaactttcttagcttctctcatatgaattgctcaactaaaccctctggaggaagtttattatgggaacaagtctctgac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ESF1:NM:016649:11/14
0 chr20 15035673 15035674 1001855 0 - 1104685541458 NA NA SINE Alu AluYb8 ttttagcaaaattaaaagagcttgacaacaaatggtagttttttttttcaactattaattggttatgtgtcagctcagcttcctagaactaaattacttt
ctgaaaaatagaattatatatttttgttgcttgctaagaaaatgttgcccagaaatttaaacataattcatttcatatgtgtgtttgttttcagtgtcat
aaagcagggagaagtttagaaaaggtagaagaggtaaactggtcatattttatggttccataaaatgctggaatgagaattcaaaccccaggaaatgttt
taagctgtaatacttgtttaaaaacaaaatcccaaaagccttaaatgttatgaattacagaacaatctatatacataaaggtatatAAAGGATTGTGTGT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAGGATTGTGTGTtctgtgatgtcaaatattatatacatataaatcatacattaggggatacataatatgtgtttgtatgtgtggtgtgat
atttaatgcatatatactttctaaaatacaatgtgtttcatattaattttaccagtggttaaatgttcaatgctgttgctataccaaatatctatggcag
atcactgtaatagggcacttaatgtaattcaagagatatatttgtgcacctaacatgtatctgggcagtgctctgtcctggaaatgtgaatgggaacaaa
acaagatgggttctctgtagggcagcactatccagaagacatatcaacaatgcaaactcaagaaccactatctggggtgatggctgcagataccacgctg
ttccacgc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MACROD2:NM:080676:5/17
0 chr20 16176651 16176652 1001856 0 + 1104685541753 NA NA SINE Alu AluYa5 attggtaagcgtcctaacctttagttaggaggctctcttcagccgagggcaattcttaggagagggactcaactgaggaccatcactagacagcattcct
agcacttagggaaaggagtgcctcgtcctgaaggggagatctgggaggagctcctgaatgaagagggtcctagtagggggcagtgtagtgagggagtcaa
agtaacattcccaaatgtgaggcttcaaactctatttacctggtaccagcagccagtgcagcctgaacactctgacctcgggagaggaactatgagctag
ttccatgccagctcctgaatctctcacatgggattctaagagtatcagagggtgagaataaagagtctctggaattaatactctgttgtttctAAAAGCC
CCTGGGGCCCGGGCGCGGTGGCTCACCCCTGTAATCCCACCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGCCCATCCCGGCTA
AAACGGTGAAACCCCGTCTTTACTAAAAATACAAAAAAATTACCCGGGCGTAGTGGCGGGCCCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAAA
ATGGCATGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCCCCCCTCCCCTCCAGCCTGGGCGACAGAGCGAGACTCCTTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCtggggaacttaaatgctggttgttggggtttcggttcaagaaaattctattcagatttgggttacagaa
actacattaatagccaagaaaagagggacatggacctcacactaaatcagttcaaggacaggaaaaaaagcagttgtttaaatgggaacactcaggggcc
aacaagagtgtgtttcttaaagtgtgtcaggggaaaatcaattcccaaaaagtggtaggaaattaaaagaaagtcttttaaaaaactgtaatcagagaat
tagtctaaggcttcttattaaagaagtcttctttttaaaggagaatcacacagaaatccagaaaatttggtacaaagaaggtgggggattctgaaacaaa
gaacaatgagataaatatagtagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr21 22739222 22739223 1001857 0 + 1104685577526 TCCCCCAGCATATACATTTCA CGCAAAAGCTTTGTTAACCTG SINE Alu AluYb8 tttttgtatttttagtagagagggggtttcaccatgttggctaggctggtcttgaactcctgacctcaggtgatccgcccaccttggcctcccaaagtgc
tgggattataggcatgagccaccacatctggccaacaataataatattaataactattcttggtattattattattaatagtgatattcccattactttt
atctttctctcaaaatcgagataaaatgtgatataatggacatgcaatcacaagttttattttatttttaattataattcccccagcatatacatttcac
aaaactaactaaaattaattttgcctcaatatctttattttttaaataaaatgtagatgtagcctaacagatcaatgagactctgtagtctgttAAATAA
AATAGGAGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGG
CTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATAAATAAATAAATAAataaataggagctaactgacagaaaaagattctaattatttaatgtgcattaa
aaatatcaggttaacaaagcttttgcgtaatcttatgcaatacaaatgttagttttaatctttttgcatggctgtatcttgtatctgcagcatctctatt
tcacaatcatttccagctgtatgacagaggctggaattaaatcttctacaagtgattttcaggagtaaggatccatgagtatagctactttctgaaattc
gtgcgtgtatgcgagagagagagggccacaaattagttataatatcactctggtcaattatacccagcaattgtagaagaaaagatattagatttttaat
ttaaaagctatagacaaaataactctccacttcttattaga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 549 199 NA intergenic
0 chr21 27143225 27143226 1001858 0 - 1104685579054 NA NA SINE Alu AluY tctaagcccccagtttgactctcgctatgacatcttgggaaaactacttaacccttttgagtctcatttctgcatcagttacacaaagggagtcgatctg
gcagatcatactcctctgagttctgtgagggcatgatgtggagggaatatcaattttgagtctaaatgcaagctacaataatttttctgtctccaatatt
tgcaatacttctgggtatataacctgtttaaactagaagttttctaactactttctcatttgtgatcaattaaaatatccatttgtccaatattacttta
gaccatatgttcccaaaagtaggactaataccaaacagcttccctatttctaattagtcaatcttatggtactaaaatgtgaataaAAAGCATTTCCCGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAACAAAAGCATTTCCCGGtatgaaatatgcacattagttgtttctctagacaatgtttacattaaaacaattctaatagctcatgtatattacca
gatttcctcatttcatggctacttgttgaatacttactttggtatagacgtcgtgaaaattgtgaatagaatattgtgtctataacatatgaatcagtga
aacaaataagaacacataaggtgtaaatagaaattgacaccttgatgcttatctctcactttaaaatgcagacaacttgttctttttttcagacagtccc
tctgttcatagaggacaataatgtgtttaataggtcaaactgttaattgttccaataattttatgtcaaatgttttgagttttgttctgttatctctaga
aataaaaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr21 37979708 37979709 1001859 0 + 1104685007383 NA NA SINE Alu AluYa5 aacaccagtaaatatattgaaagatgcccaactacatgctagaaaacacgaatgacacccgttttcacttatcctactggcaaagatcaatgagttgttt
ctacccagtgtggatgaaaataggtagacaaaggcgtgcctgtctctggaggtaggattggaaatcaaatgatcctttgtaggagggcaatttggcaata
tctttaaaagcaaaatatgcatatcctcttttatcccatcaatctcacttctaagaatctatcctggccgggtgctgtggctcacgcctgtaatcccagc
actttgggaggccaaggcgggcggatcacaagttcaggagattgagaacatcctggctaacatggtgaaaccccgcctctacAAAAATACAAAAAATTAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGCCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAATACAAAAAATTAGccaggcgtggcgcgtgtgcctgtagtcccagctgctggggaggctgaggcaggagaatggtgtgaacccaggatacgg
agcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaat
ctatcctatggatatcagaggtttactgcactgttatttgtaacaaaaaaagtagaaagctgtctataatattctctagagcactagttatagaaatgat
cgtatgtccatcaaataaagtattattttgcaatttaaaaagaacaagttaatgtgttaataaagatttgtggtatatgttaaattaataaagagcagtt
gacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KCNJ6:NM:002240:3/4
0 chr22 25283732 25283748 1001860 0 + 1104685553540 NA NA SINE Alu AluY ctgtaaaatgggcccaataattcttactagcgatgctgctgtgaggattaagtgagataggggcttaataagggaaagaccagaggggtgtggctaatgc
cttgcagctcttcaataactgtgagtcccatctgaatctaccgatgagaaatcagcagtggtgagcaggaaaagtggggaaaggagattggcaagctcta
gactgtgccaggctttgaatgccaggtaaggagcttggagttatcctggggacggtgggaaattgtgagcattggtctggttgtgacctgggaggggaca
caggctctctctggtgtaggatgcctgaaaagacaagggctggaggccaagtgatagctgctgggggacccagggagccatctcaaagaagagagNNNNN
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTACCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTTTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAGAGAGATGGGGNNNNNcgtggtggcccatgtctgtaatctcagcacttcaggaggccgaggagggaggattgcttgagctctggagtt
caagaccagcctgggcaatgtagtaaagctccatctctacaaaaaaattaaaaattagccgggtgtggtggcatgctcctgtagtcccaactacttggga
ggctgaggccagaggatcacttgagcccaggaggtcaagactgcagtgagctgtgatcacaccactgtactctggcctggttgacagagggagactccgt
ctcaaaaaaatatatattttatataaaatttatatatatatattatataaaaattattatataaaaatatatataatacacacacacacacacacacaca
cacacatatatatatgtcgccca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TPST2:NM:001008566:1/7
0 chr22 31858513 31858514 1001861 0 + 1104685555475 NA NA SINE Alu AluYg6 ggagacacagccaaaccatatcaaccttcataactatttatttgtgtatttacttatttatttatttatttttttgagacaggatctcactctgtcaccc
aggctggattgcagtggcacaatcacagcttattgcagcctcgacctttctggcgcaagggatcctcccccctcagcctcccaagtggctggggctacag
gcgtgcaccaccatgcctcgctaatttttgtgttttttgtagagacggggtttcaccatgttgccaggctggtctggaactcctgggctcaagaaattct
cccacctaggcttcccaaagtgctggaattacaggcatgagccactgcttctggcctccataactatttaaatataatgttgaatAAAAGTCATTATTAG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCTGGCTGACAGG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCGCTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGTCATTATTAGtatttttgtacttaaaaatttaatttggaagctcaagtttttatgaagcaaaagagtttttacttttgatttatcagcct
aataactcctcatgtatgatagaacacacagcacttgaattaaaatttattacagggagtctggttgtctaagattttttctggcctttcagcaaccaca
gattctttggtccttccttgatgtgtccaccctcctcaagtagcaaatcatttgcttcttttattcctccttgattctcaccacatcacttccagactgc
cctgggaaaatgaaattcttcatctattatcgtgcatgtaacatacacttttaagacgataatttattgtttcccgtcttatactttcttttttaggctc
tggtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr21 43259111 43259112 1001862 0 + 1104685027451 NA NA SINE Alu AluYb8 aggagttcaagaccaacctgggcaacatgatgaaatcgtgtctctacaaaaaaatacaaaaattagctgggcatggtggcacacatctgcagtcccagct
actcttgaggctaaggtgggagggtcacctgaatgcagggaggatgaggctgcagtgagcagagatcctgccactgcactgcagtctgggcaacaaagtg
agaccctgtctcaaaaaagaaaaaaaaatctaatttcaattaaaataaaattaaaaagaTTTTTGCATTTTTTGTAGAGATGGGGTTTCACCATGTTGAC
CAGGCTGGTCTTGAACTCCTGACCTCAAATAATCCACCTGCCTCAGCTTCCCAAACTGCTGGGATTACAGGCATGAGCCATCGAAACTGGCCTTCTTTTT
ATTTGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGTTTGCAGTGAGCCG
AGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATTTTTGCATTTTTTGTAGAGATGGGGT
TTCACCATGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAAATAATCCACCTGCCTCAGCTTCCCAAACTGCTGGGATTACAGGCATGAGCCATCGAAA
CTGGCCTTCTTTTTtagcccattggtagtggcatatgcctgtaatcccaggtactcgggaggctgaggcaggagaatcatttgagcttgggaggcagagg
ttgcagtgagctgagatcatgccactgcactccattctgggtgacagagtgagaccctgtttcaaaaaaaaaaagaaaattatagctttgaagaattggc
ttttcttccccccgagacggagtcttgctttgtcgcccaggctggagggcagtggtgcgatctcggctcactg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr21 43322922 43322923 1001863 0 - 1104685027393 NA NA SINE Alu AluYa5 ttactcaattgggtgctgtttgcttgtttgacctaaagttaaaataaaacacctatatatgtttagggaatgttcaacagggTTTTTTTTTTTTTTTTTT
TTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGAAACCTCTGCCTACCAGGTTCCCGCCATTCTCCTGCC
TCAGCCTCCCGAGTAGCTCGGAGTAGCTACAGGTGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTCACCA
GGATGGTCTTGATCTCCTGACCTCGTTATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTACCGCGCCCGGCCCAGAAACAGTTT
AAAAAAAAATTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCACTGAAACCTCTGC
CTACCAGGTTCCCGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTCGGAGTAGCTACAGGTGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGT
AGAGACGGGGTTTCACCGTGTTCACCAGGATGGTCTTGATCTCCTGACCTCGTTATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAG
CTACCGCGCCCGGCCCAGAAACAGTTTaaaaaaacaaagcaaacaaataaaaaaaaataaaaacacatgcacacaaaaccatccaaaatatgaagacctc
atgcgaaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PKNOX1:NM:004571:10/11
0 chr22 16085309 16085310 1001864 0 - 1104685013467 NA NA SINE Alu AluYb8 tccctcttcttgactgtggatataagttgctgatgtttgggagactaataggggagaaaggcttggaagactcagtgttcaatatgcaaaatttaaaaaa
agtcttcatttttagtatgataaccccatccttaactaggccagaaactctgttttacctttccctgaaaacaaatcttcactgctctgctgaagaggga
gtgggaggaatgtctgtggctctaggtttttgttaaaaaggctttccagccattcctccatttctcctgctttggacttaccttcagcctcactttcaca
ggtatccgaggtttctttcgtcactgctggtttcagattcagtgtttgttttttttgtttgtttgtttgtttttttgtcttcAACAAGTGCTAATAATTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGCGGTGGCCGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAACAAGTGCTAATAATTTtatgtaccttccatcttccaagtttttttttgctattttctcctttcttgctttcttcaaccttgtg
aatatatgcttaatttttttccccactgtcattttagtgcaggttttggagaggaactaaggttaattcatgtgttcagcctgcaatctctaattgagaa
tccatccatgcacttgtgaatatgccccaactcatagagcaattgaaggggctctcactggtactgttggagtatcttgttcttcagtccctagaccaca
agaagtaaagcattagagggagaggattgctggaatttagacctacccagaatgacaagtgaactgcataggaagggacagaaaaattatataaaaatac
atacaagcagagcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr22 17741461 17741462 1001865 0 - 1104685036367 NA NA SINE Alu AluYa5/8 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
tggtctcaaactcctggacctcaggtgatccacccgcctcagcctcctaaagtgctgggattacaggcgtgagccaccgcgcgcggtctccatgcttcta
aatactttgaaatgctggattaaatgcaaccctcgtccctaaaatgaataactagttcacaggaaagagcagtacccagagtctaaaatctaagaNNNNN
CAAAAAAGCCAGAGCACAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGA
GACTCCGTCTCAAAAAAAAAAAAAAAANNNNNagccagagcagtgagcagaactgcaccatgggtgcaaggctaggggtcttgactgaggaccttgagtt
ttaatgaccacatcgacttgagacaaggcctggggtctaagccatgtaggagttggaattaagtcaccagcataaagtcaagctgcttaaaaaaggactg
aggcagacctgggaaaacccaactgacagcacaagaactagcagagaagttggaatgtctcagcctgtttttgggttgggataacagtcttcccttgaga
ctgtgtaaccacaggtctgccctcatgtggattcagggccagtttaatactacttgtgttgtatagaaatcgccaagccgagaaatgaacacaaacgaaa
tcctggtctaattgacgttcagaggca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:HIRA:NM:003325:15/25
0 chr3 6370834 6370835 1001866 0 - 1104685146931 NA NA SINE Alu AluYb8 gcctgtgctcctgatgcaaagacagtaaaaatgttgttttaagccactaaatgatcaaatacagactacagataatatatataatcacattaatactttc
ataggaatataatttgtatataattatttagcggactacatttaaaaaaaatttgaaggcctctttgttgttagatcgaggggatgttggggcatcttta
gaaccataagacagagtgcctgacacataccagctgcttatcatgtttaaggagatagtttcttaaaacttttttcccgaagcttgaaacttcactaaat
gtgtaagatacattctcaaagaattagctgtatatacaactaaacttgccggagcattatcagctttaagaagatagaatagtagaGATCTCAAACTCTT
CCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA
GCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCCTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT
TGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAGATCTCAAACTCTTaagtcagacggataggagtctcagttactctttttttgaatctgcttccacatctgctaaatgatagtattttaataattacc
tcattgggttttggggaggattaagtgagatgaagaataacattgtgtcttgcacaaaagaaatatctaaatgctaacaattattactgagattttaaag
aagtttaatatacatgatctcagttattaaaaaaatcatttgacattgttttatctgattttattttataaacaaagagcaattaggttgctcatccact
ggcacaaggctagccatagccatgttgcctgagaatcactttagagttgaactggtttagttaaatgagataatgaataaatagggcttacctggcccct
ggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 7105383 7105384 1001867 0 - 1104685146832 NA NA SINE Alu AluYb8 cagagagattaaaacaaaagtaatgggaagtgtccagaccttttgttgttgctgtttggtaatcgacatttgctttttgttggaggaaactgggcttttc
tcttctcagcttgagcaataacaaattgggaactgaagagagctctgtttttaagaggacagctgtatgtataccctcacaggatgtcctctttgccaga
gtagtcagtttagactatttagaaaagttctaactaaattcttcttacaaattcctgtgtcatgctttatgcgttcctccacatagtagttgtgaatcct
taaatctttgggtcaagaggtggagggcactgtcacacaagcctcttacccctgccgttccaactcgcgccactggtgcttcgatgaaCACTGATTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGTTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAACACTGATTTCTTaacctccaatgtccttgtggcttcagataattttagaggtagaaagaatgaacaaaaggattcattcaacgatccatgtttg
tttttaaagtggagaggttgtaaccaagtgtttcctgaggccacacatttagatgatctctggcccctatctctcaaccctggcactgcaaatgtagcca
ttttaaaagaaaaaaaaaatttagataatatcccatctagagtcaatacactatttttgtcatttaaaaattccacttacaacccaaattcttcacttca
taagctattttagattcttgcttacagatgttttgattggaagattctcttagttcctccttcaaggcatatttgagttcattgcccctttttacaatca
gtttca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GRM7:NM:181874:1/11
0 chr3 7589534 7589587 1001868 0 + 1104685146708 NA NA SINE Alu AluY ggatcccctggggctttgcagtgaaatacagttctggatccttctatggatgcccagggtctactgcagttaaaaaaattctaataatgctggctgggca
cagtggctcacgcctgtaatcccagcgctttgggaggctgaagcgggcggatcacaaggtcaggagatcgagattatcctggctaacaccgtgaaacccc
atctctacaaaaaaaatacaaaaaaattagccaggcatgggggcgggtgcctgtagtcctagctactcaggaggctgaggcaggagaatggtgtgaacct
ggaaggcggagcttgcagtgagccgagattgtgccactgcaccccagcctgggtgacagagtgagactctatctcaaaaaaaaatatatatatatNNNNN
AATAATCTTTCTACCTATAATAATTCTTTCTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGG
TCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAG
CTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCAAAAGAGC
GAGGCTCTGTCTCGTCTGCCATGAATGTAAGAAAATAAACAAAAAAAAAAAAANNNNNtctttctatctggagtacatttaaaaaaggttgacttttata
agttttgaataagtggaatctgaattggcaatgttttttattgtaatatagtccctaaattctgttcgctgtctagtcatgctacttaatgttcagaaat
agaggctgagtttaaaaatgtcttgaggtgttgcagaattccttaccaagcactcgctagctcctctacctcacccctcctcatcagaaccaaaacctgg
cgctttcctagtattgaaaattcaacatacctatgaattcttcctaaaaagccttttttttctatcaattagataggacaaatgtattttaatgaacaaa
tggcattttaataaaaaagttcttttttttaaattagctgattctattaaggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GRM7:NM:181874:7/11
0 chr3 12112072 12112073 1001869 0 - 1104685218246 NA NA SINE Alu AluY agtagggggaaagaagaaggaatggtcaactttgttgaatgatggcgacagaacaagttcaatgaagatagagaaatacccaccaaatctgtccaactgg
gggatgatggtccttGTAATCCTAGCACATTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCATCGAGACCATCCTGGCTAACACAGTGAAAC
CTCGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCTAGCTACTCGGGAGACTGAGGCAGGAGAATGGTGTGAACC
CGGGAGTCAGAGCTTTCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
CAGGCGTAAGCCACCGTGCCCGGCCAATGGTAATCCTAGCACATTGGGAGGCCGAGGCAGGTGGATCACAAGGTCAGGAGATCATCGAGACCATCCTGGC
TAACACAGTGAAACCTCGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGGCGGGCACCTGTAGTCCTAGCTACTCGGGAGACTGAGGCAGGA
GAATGGTGTGAACCCGGGAGTCAGAGCTTTCAGTGAGCCGAGATGGCGCCACTGCACTCCAGCCTGGGCGACAAAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAaggctttagtcactgctcccagcctgacggtcctttaaaaaagagctattttagtgtaattgaggggaatggtacggaagccagac
tgtagtgagctgaagagtaagtggaaggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SYN2:NM:133625:2/14
0 chr22 48659385 48659461 1001870 0 - 1104685299623 NA NA SINE Alu AluYb8 cggactgaacagtgggcttcacaacaacggccgctcttttaagccgtgttaggagccacccgaacacagcttaaaacgccagcctcaagaggaggaaacg
gtctatgattaactttactacaacctaaaacaagtctcaacagcatttaaaggaatataacaaaatcctgcacccaataaagtaaaatacaaaatggctg
acaaaaacaaccagacctgcgatgaagcgggagaaaaccacctctgaccaggagaaaaaccaaccaatagaaacaggcccagacactgaccaggagaaaa
accaaccaatagaaacaggcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaaccaataNNNNN
AGGCCCAGACCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACA
AGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAANNNNNcaggcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaacca
atagaaacacgcccagacactgaccaggagaaaaaccaaccaatagaaacacgcccagacactgaccaggagaaaaaccaaccaataaaaacaggcccgg
acataagacaaataataaaattagcggacaaggacatgaaaacagctattgtaagagcggatatagtggtgtgtgcctgggcaacatggcaaaacatcgt
ctctgcaaaaaaatacaaaaattaggctgggtttggtggctcacacctgtaatcgcagcacttcgggaggctgaggcagacggatcaaccgagctcagga
ggttgagaccagcttggc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZBED4:NM:014838:1/2
0 chr3 4180092 4180151 1001871 0 + 1104685147608 NA NA SINE Alu AluYa5 aaaatgtaaagttcttatttagcccaactgaaggaagaaaaatgcccagtatggatcaaaaatgtacaaatgtctgatgtaaagtcattgggtgttgaac
taagcagcagcctgaaaaaaaaaatcactgtctactgctacacctaggaaatgtagcctccactcttctcccggtagactgctagggtttccgggtcact
gcactttgcctattgaagagaagagaaacaaaaacactccaacaaccaattatctctccttgtttttattgtaccaaagcagacttaatctccttgcccc
tttttaaccttccttttcatgcagatgagagagagagagagacagagagagagagaaaggaaggaaggaaggaagggagggagggagggagggagNNNNN
ATGGGAATTTATAAAGACTTTATAAAGATGTAAGAAAATCTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCG
GATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCT
GTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGG
GCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNatctctccaatgtatctctcaaagacctattacaggatctttcttc
tatctctttgttgatattctggttttcttgtactgacatccaggatactgtccttggacccactttctcagacatttctgtaaaggaacagtcttccagc
tcctttgtatgagaggaaattgaagcctatgaaaggtaagtgccatgctcaaggtctagagtgagtggggcagagttaaaacaacatctgggtttcctaa
ctgccactccctgttctttcaattttaccagtccacatcataaagggagatcaagatgtattgttaggtttgaacctgtttcttaatttccaacatcagt
cttctaatagacagccatcatcttatatttttctatgaattaccttgga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 100209466 100209467 1001872 0 + 1104685642356 NA NA SINE Alu AluY agaggtgtgcctaggcatggagctgggaaacctcctccctggccccaagttatctgcatggggaggggagtcagcctaaactcctaatgtaagagagtgg
agctccagatgcctggagatttgcctgagcatggagcaaagaggaccccacttcaccacagtcctgtataggaaggactggctgggtcaggctgcttatt
caggtgatcaggtgctccaaatgtctagtgatctgcctgggtgtagacaggagagaacccaccctacaccaggatctttttattagccagatgctgtcac
aggggctgtttgcccatgttctcatgcccaggattttggatgtccttcacaattctggtggattccaattttccttcttgaattaaaaCATCTCTGTGAG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTC
TCTACTAAAAATAAAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGG
GAGGCGGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAACAAAACAAAACAAAAAAAAAC
CCATCTCTGTGAGtctttatgtactgtcttgctatttacaagtgtctgaggcatgctaaaagcttctaatctgtcatctttgaaaaaaactttatttaca
aaacttggtgccaacctgcaggctgcagtttgtcaactcctgatatatgctataatgttctggcagtaatccaccttggaaacctctaggagaatgagaa
ggaagatttttctattagtatccctctcttctctgttcccctactcacccttcaaaaggcacttgactttttcttgccatcctctagcataatcttcagt
aagtctagtgtttgaaaatgagatacaggagggaagttgttatgaaattttgctttggtcctataaatgtccctgaataaaagaacaagaagactaatga
c Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 101138089 101138090 1001873 0 - 1104685642147 NA NA SINE Alu AluYa5 atagtagggcttcatttcataaatgtttgttgaataaattaatgttaaaccaggatttttcctttactatgtatatctttttataaaagctaagtagata
cagcatagtgatttagtaggctctggagccagactgcctaaattagggcctgactctgactctgccactttttagcagtgtgacctttggcaagtgattt
aaaaaggcttcaagcgggctgggcgcaggtggctcatgcctgtaatccctgcattttgggaggccgaggcaggcagatcacaaggtcaagatcaagacca
tcctggccaacactgtgaaattccacctctagGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGCACCACCACACCCAGCTAATTTTTGTATTTTT
CGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGG
GCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA
GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGCACCA
CCACACCCAGCTAATTTTTGTATTTTTaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagatcgtgccactgcactctagcctgggc
gacagtgtgagatgctgtcacaaaaaaaaaaaaaaaaaaaaaaaggcttcaagcttcagttccttcctctgcaaaataaatgagttaatcaaaggaaggc
atttagaatgggcttgtatatgataagtaatgaatacatgttagctaccattattactattattttctttctctaaattggagtagttttgcttggctac
ctcgataccatattaaatgaccaagaccaaaaatgatttcttttttgaggcttttcact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FILIP1L:NM:182909:1/6
0 chr3 107771892 107771893 1001874 0 + 1104685640516 NA NA SINE Alu AluYb8 taaagagacaatactggctagtctgtaaaaggtagactggtggaggtaaaaataaaggcaagaagatagggtgctcctaccacaggttggagagaggtaa
tagtgattcgatgaacagtgtttaatgtttgtgacatatctttggagataaataaggtttattcatggattatacacgaagtgtgaacaaaagtggggaa
acactggagactccacacagcagggtgatggtagtgatttcaacagctctgtgacagacagtggtggagatttttccttgaagcagaaatccagagttct
cttttgtgcatcttcagtttgagatgcccattagaaactcacatgcagatcctatatgtggaatttgacatatgaatttgtagttctTGAACCCTTTTTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAACCCTTTTTTctgctgaaacatatctgataatcatcagaatgcaggtaatacttaaagccag
aagagcctcatcttaaaaaaagagggtctataataaaaatagcaaattttattttgtggttatgatatgcctaacactcacctaaaggctttttccatgt
tatgtttggaggtcccaagaccacctctgggtttgatgatttgctagggctgaaataactcagtacgtaatcactttcatggctatgattcattacagga
aaagtatggaaagcaaaatcaacaaagggaaatggcacatggggcattttctgagggaaaccagacacagcatcctttcccagtggagtgatgtagaata
tgcttaaacccccagcaattagatgggataacaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 112709066 112709067 1001875 0 + 1104685639204 NA NA SINE Alu AluYb9 ggtagcagggtgcaaggatggataaattacagaaaggcatgaagacattttgcggggtaatggaattgttttatattttgaatctggtcttagtttacag
gtctgtacatgtcaaaactgttcaagttgtgcatttaaataggcatagtttattgtattccaattatacctctataaagttatagaaaagaaataagcaa
aaattataaaaggtaaacctgaaaagatccttgagagatccaaaatggatttgaacaaatggaaaaacacttcttgttttttaacaagatgattcaccat
cataaaaatgttaccatcaatttaatcttacatcaataacaatagttgtcttctggagctagacagttcatttaaaagtttatatgcTGATTTTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAATGATTTTATTTTTggaataacaaataggaaaacactaaacaaagcagtaaggcaggactagctctaccagaaattaaaatatacacaaaatc
ctctgtaattaaaacagatggtactcacatatgactaggcaggtggactaatgaaacagaacacaaaatccagaaatagacccaagcacatctggaaact
ttagtataggaatagactgaatctcaattcactcagttaaagatggactacttaataatttgtattaaaacaacagaatagtcattttggaaaagataaa
aattaattccatgcctcaaatcacacactaggataaaccccaaatgaatcacatctctgaagataaaataaaacaattcatatttctaatatagaatatt
gatcgatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 113936196 113936197 1001876 0 + 1104685638840 NA NA SINE Alu AluYa5 ccaggtcctgggctgaacacggtgcataaactcatttaatatctaaactagtgatatttccatcttactaaagaagaagctgagccttctagccagtgag
tcacttgttgaaagtcacatggcacaggttgagctgtgattgaggcccacacagtagtgagcattataatacccaggcctatagtcctttggctgattgg
ggccagatgtagttcagatttctgaatttttaagatttgagagaagtaaacagttcatatactgtacattaaaacacccctagtgggtactctacctttt
aacgttcctactaggaatatgggcagcctctcatgattaaacacattaattaatatatctgtcataaaagataaaaatactcacattTCTTTATTATCTT
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTT
GCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTTATTA
TCTTtatgtcctcatattgcaggtaaacgttgttgccaaataggtctcaaaagagtttccattttcaaagttttttgagttttagaacttcacataaagg
attccggacctgcactgttcactaggtttagtatctctcccttcccggggtagtgccgacaatactgctgattcttactcttactttaggtttgatgagc
caagcttccagctccaggttttcttgagtcagggtaaaatacatttggcctctagggggagctccaggcctccagtttcactccacttcaccacttcccc
agaccccaatctacaccctggaaagcaaagcgctccaaccccaaagaggagctgtacaactggacatgtcaagaagtacttacattgagcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 37336606 37336607 1001877 0 + 1104685212316 CAAATTACATTTTTGTCACTAACACTT TGCATAATTCAAGAAGAATGTCG SINE Alu AluYa5 cttggccacactttctttttaaaacatttaaaaaattttaacaatttctttcaatatttatatttctctttcattgttgatgttcagtataaccaacaca
ctttcattaagcagtttgtttatccatccctcccacctggcagtaggctatgattagggacaaaaaaaggaaaagatagattaattgaagcagtgactgc
ataattcaagaagagagtgcataattcaagaagaatgtcgaaaatctcatcagactgagtgtacccagagctcaaggctgagaaaattttggctgacttg
cattttacagaagaagaaataaaaatggccaagtaatttttattttaagtggaataatttcagtactaattttcagtccatacgatggcttaaaaNNNNN
CCCAGCTTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGTGATCCCGCCACTGCACTCCAGCCTGGGCGA
CAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNcttcctgagctaacaaaaacaaccagaaagcagattgagatttttg
ttgaaagattttttaaaatagcataatttgaaagtttaaaacaaaaaatattttcttcacttatgaaagccttttatataagttgccataaaaaagtgtt
agtgacaaaaatgtaatttgtttttgtatgaaattattatccgtaagataatatgtgtaactcaaaaatgctttccgtgtaaaaggataataaatagtat
tttagattttaatcttctttcttacgtgtattgttgttttcactcttagttgcatctggggccccgagaatttctagcagcagtgattcttgaaatgagt
taacaagttctctacccagctctgtgggggcacatggatttacagtatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 503 363 NA intron:GOLGA4:NM:002078:12/24
0 chr3 50038044 50038045 1001878 0 - 1104685208878 NA NA SINE Alu AluYa5 gcctcctgagtagctgggattacaggcgtctgccaccacacccagctaatttttgtatttctagtagagatggggtttcaccatgttggtcaaagttcta
tacttaatttatcaattagtcttatatatttaaatgataaaatgaaataatgtggtcttaattactgctgtaaccctgatacctacactaggagacatat
atacagagcagggggaatcaatagctgttgaacaactatatgtaggcagcaatcaatgaaaacttgaacagtggggcacagtggctcacgcctatattcc
caacactttgggagactgaagcaggaggacggcttaaggccaggagttcccaaccagcctgggcaacatagtgacaccctgtctctTTTTTTTTTTTTTT
ACACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTTTCTACTAAAAATACAAAAAAT
TAGCCGGGGGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG
ATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATTTTTTTTTTTTTTaaaaattaaagttgtatatatataaaagg
ttaaatttctaggtggcagacagaagatacatagaaaatccaacaagcacattcacaggtaggtatatattaacaggaataagtgcatctacctattcgc
caagagaaataacaattccgtggtgttttgttttcttttttgagatagagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcact
gcaacctctacctcctgggttcaagtgattatcctgcctcagcctcctgtgtagctgggattacaggtgcccatcaccacacctggctaatttttgtatt
tttagaaaagacggggtttcgccatgttagccaggctggtcttgcttctgacctcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RBM6:NM:005777:6/21
0 chr3 51738985 51738986 1001879 0 - 1104685208505 NA NA SINE Alu AluYb8 aatcaataatctaagcttctatcttgggaaactagaaaaagaagagcacattaaatcctaagtaaatgaaaaaaaaaaaaaaaaaaaaagaacccagccc
cacccagcagacctagttccaggtttgccccagtggatttaggctccaggtccaaccccacagagctaggcatcaagcccacccacctgttgacccaggc
agcaggccagcctgacagagaaatccagcagcaagtccaattgcctgcccagcatctctggacaggctaactggtgaagggctttctctgctaaagccaa
tctattaagactgaaagaagtgcctgcttcttcagatgcacagaaaccaatgcaaggtcacaaagatcatgaataatcagggaaaCTTTGGTGGTATCTT
GAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACTTTGGTGGTATCTTgaacaaaataaagcaccactaaccaactctaaagaaatgaagatctgtaaaatgcctgacaaagc
atccaaaataatcatattaaataatcagcagcagagttgggcatggtggctcatacctgtaatcccagctacttgggaagctaaggtaggaggatctctt
gagtccaggaagttgaaactaatcacagcaacatagtaagaccccatctcttaaaaattttttttaattagctgggcatgatggtgtgtgcctatagtcc
cagctgcttaggaggctgaagagggaagattgcttcagcccaagagtttaaggctgcagtgagcttatgtagctgtgtcttaagttcattttgtttcact
ctgtcatctagacagagtga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 45517667 45517668 1001880 0 - 1104685210413 NA NA SINE Alu AluYa5 tctattttggaagtttcattccatataatggaatatcacgcagcagtgaaacaggaatgaaatataacttcatccgtcagcactgctgaatctcaaaaaa
ctgttgagtgaggaaagcaagacagaatacctgaaatataattctacctatgtaaacttcaaacacaggaaaaccagacaatatatagtttaaaaataca
tgcagaaacgatacatttataaagaaaagcaagaaagtgaggaattaaaaatctgggatcggtattagctaggggcgaggtggtgggcgtagaagagcga
tacacaattggagggggcaccttggggattctaaggtacctgaaatactctgtttcttaaactgaggagtggggcatgtatgttcatataTGGAATTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA
GAATGGCGTGAACCCGGGAGGCGGAGCATGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAATGGAATTTTTtatttaatgtgttgtaccattctttaaatacattaaatatgtaatttttatacatgatacgtttcatggggaaaagtaca
cacacatttttctgaacattatgaggaaagggttacaataggccaacaggaaaagaatttactgatgtttttacaatgtgattctctatttcaaatccac
tctatacattttttagagggatgcatcaaggtgggattcagccaagcttaggaacaagagctgacatggaaggactgggtgataagcatgacctcacatg
agatgctataaaacactatgggccactcctctctgcctcacaggtacaattcttaattacttaactcagttaaacagagaagcactgaaggctaggttct
atgcaagcat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LARS2:NM:015340:15/22
0 chr3 28682063 28682064 1001881 0 + 1104685214322 NA NA SINE Alu AluYa5 aactgcagcccatgggccacatctggcctgtggactgtttttgtaagtaaaagcttattagaatacagccacattactttatttatgtatgtctatgact
gctttcagcactacagtagcagagttgagtagctgtggcagacactgtatggcctgaaaggcttaaaatatttactgtcttgccctttacaggaaaagtt
tactgacccctgaattgaatgagccacattcttcactttaaaaactgtgaaagattttacagctggatattactcttcccaagcctttctggttaggatt
tgtctttcaaagtgatcaaagaatgttggagatacaaataatctgagaagattcatctagtctggaatgtcttccattccacagatTCTCTGGGGCTTTT
CGGATCACGAGGTCAGGAGATGGAGACCATCCCGGCTAAAACGGTGAAACCCCGTTTTTACTAAAAATACAAAAAAAAATTAGCCGGGGGTAGGGGCGGG
CGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAG
CCTGGGGGACAGAGGGAGATTCCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTCTGGGGCTTTTatcacgtggcttatacaagcttccac
agaatattagagatagactagagtgccctttatttcctacacaggtttgtgtattggaagagtacctaaacatactgtcaccaaaacaggatcatttccc
tcatccctcctcaaggaccttattctgtcagttacctcgtcttttctgtatcttctattgcttcctctccactgtcctttcaaattattattaatagaat
actcaggacttaaatattgtaataaggacattgccatcacctatttcatctagacataatgtcatgcttcttcccttcccttcattgcccacagtggcac
acgactcactattttactccctcaagttccattctaaattcagctcttctaaaactgttc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 171433674 171433703 1001882 0 - 1104685600204 NA NA SINE Alu AluYa5 cacttagctctcagtaattgcgaaaccactatgttcataacattccacaatcaccagatccttgttacagtaccaaagctaaaaatgaactgcaaaataa
agatattacattctaaaggtataaaacaaattatgcacgtatgatgttttttccagtttaacttcagcactagcataaattattttaccactgatcctca
acagaatataatctgctttatcacaaagattcccaaaatggcaaatttagatatggttttagctgaatttttttaagcattttttattttgctattgagc
ttcagaagacaaactgctttcaatgtgcctatattctaaaatatagaatctattataaagtttttccttaggactaattgctttTTGGGGGTTTATTTTT
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATTGGGGGTTTATTTTTaagaatcacattcagtccttctgctacctcagtgtaagcttttcttctaaattaggctattcgaaaaaata
cttttatttgcaataaccattataataattggtttaggcaggattatccatgaatggtaagaccattgggcaaaatgttttgggggactagagtattcat
ataatctcaaagtatcaccccccaaattattaattataaaaaaggtcataaagcaatttccaccttttaataatgaagaagatagtgaattcaaaaataa
caattgtgaaatatgaatgtaacaataaagtaaaaaagcaatgttataaagccctgtcaatgtagtaaggggaaaagagaaatctctttgagttcaaggt
ccagtttttgctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PRKCI:NM:002740:1/18
0 chr3 167872925 167872926 1001883 0 + 1104685600949 NA NA SINE Alu AluY gtatttttaatggagtcggggtttaaccatgttggccaaactggtcccaaactcctgatctcaggtggtctgcctgcctcggcctcccaaagtgctggga
ttacagttgtgagccaccatagaggtggaggcaggagaatcacttgaacctgggaggcagaggttgcactgagctgagatcatgccactgcactccagcc
tgggcaacagagcgagactccatctcaaaaaaaaaaaaaaaaaatgctgactctcacatcactggtgatcttcctttgctaaaccccaggtctaatgtgc
ttaggtattcatacaaacctactagtcatcaaataaatatggaaaacatcccacataaaatatcccttttatggagttttataacatacattCTGATTCT
GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACTGATTCTaatcctctaaacaaacctgtggtaaagaaatctgcttaactttgtttcgcactctctctcaaagttattttaccctagcatt
tttttgttttctaaataatagctcataaaactatgattctatagaacaaattctaagaaataccgcattcactagtaaatcgagaggtttaatttagggg
aaagaaaaatttggaacagacaatggaataatgaagactatagaagagtagtgtgatcagctaaaaaaaactcacacattcaactcttccatccttttca
tttctttgcaagtctcaccctgctgctgcccagcagatgtcaaaatgagcaggaaaaccacattgctatacagagattccttaatggcaagctcttgctt
ccctaagact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 168027298 168027299 1001884 0 - 1104685600908 NA NA SINE Alu AluYb8 gggtattgacggccaggcttctaaacccctgaaaactcccccactcttgtgccaacttggacaacactcttttatgcactcttttttagttatccccacc
tgcccagttcacttattaggccaaaatattttaaccaaatcatctgcttccctgactattcctggactacagccgcatctcattgctgcacttcttccca
acccaaagcctcctttgcgtcttcctctcctatccccccaccttaacccacaagtatgggacatctctactccttcccttgcaaccgatgacatgcccat
taccatcacatgtccattaccatctcattaaaacctaatcactcttacctggctcaacgccaatatcccatcccacagcatgcttGGCTTTAATCCTTTT
CAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGCCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTTTAATCCTTTTtgttaccacccgcctgctacagcatgggcttctaaaacctataaactctccttacaa
tttccccattttacctgtccaaaaaccggacaagtcttacagattagttcaggatctgcaccttatcaaccaaattgttttgcctatccaccctgtagtg
cccaacccgtacactcttctgtcctcaataccttcctccacaactcactattccgttctcgatcttaaagatgctttttttactattcccctgcacgcct
catcccagactctctttgctttcacttagactgaccctgacacccattaggttcagcaaattacctgggctgtactgccgcaagtcttcatagacagccc
ccattacttcagtcaagctcaaatttca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 175893445 175893446 1001885 0 - 1104685599086 NA NA SINE Alu AluYb8 atgcaacaccctatggtccacttctaccaagtaaaacatttgaaagtttgacatgaattaagaaaagtgaatgcagtaaactctccatgtcataaaacag
gttttcatacactcaagctgcatggactttagcattcagttctaaatgaaccaaagttaagcaataataattaaaaccaagaacatcctggtgaatagtg
attggatgttaactcctgatggccctaagagcagtactggaagaacagtgcctactgggtcttaatccacaagagatatcatgaacttagacttctactt
tgatcacagacttaaagtgatacagaggaattaattatcatttattattttactggttggtatttatattctgtatgttgaatctcACTCATACCTTTCT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAGACTCATACCTTTCTtcatatgggtccctacaaatagaaccttttataccaataattttattatcaagttgagttcaggaacaaaatgaagt
aaaatatgaaaacttgtttaaaagagacaataatgattgcagtattttacaaagcatttttacatatatacttcctcctaacaagcatatgaaatataaa
caacacatagccaagtttgttattggtttcttatgtgtcaggatatacttcatctattttaaagatgtaaattctgaaacatgaatgggcttagtaattt
gtcctagtatagaggtttccgaacattcttttttggtggtacccttagtatctcagaaatatatccatagtggccctaagccaaaagacttaaaatacag
cttccagaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 139048087 139048088 1001886 0 - 1104685607795 NA NA SINE Alu AluYb9 atacattgattgatagtgtgcagggtgaaagctgggcctgcagggccttggccattggatgccagggcttgtgaggaaggagaagctgcttgacatgaca
gtgggaacgaatctggatgccagtctccccagaactatgagctgaaggggtggtgacaaaggagggcagaaatactcagtccagggtgggagtcagaaaa
gacttatagtggaggcaacacctggatgttcattagctgggccagctagcaggaaaatcttccaggtagaggaaatagaattttgacaagtaaaggtctg
gctaaataaaatgtgaagtgttgtcatataatggaattccacagaataatgaaaagcaaacctctaaatctacatgtatcaacatagatGCATTTTTTTT
CGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCT
CTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAG
CGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGCAT
TTTTTTTtgtgttaaaggcaagttgcagaattgtatatgtttatatgtaattatatgtgtatatagacatagatctaaacccagaaaaaaacacagcaaa
ctcatcagagtggttatctctgtctggagagcagagaagagcttgagggtggagatgaaggggtcttaagttttatatgtagtgttccagtttctcaaaa
ggtgaaaaggtaaattattgacacattatttaaggaatgaaaaaatgcataaaacaaggagaaaattggtcagtgccacagacagagagagatggaatct
atggaacacgaggtggaagagagcacttccagctggaggagtggaggaaaattcctgaaggaggcagcctctgattgaaagatgggccagacctgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 146170575 146170576 1001887 0 - 1104685606127 NA NA SINE Alu AluY tgtttatgctgtctccatagttatgcattataatctatattaatggttatctacaaatttatgtgttatatatatgtgtatgtatataacataagtttcc
attagatcttttagaacattgaaaatactgaaatctttgttcagataatttcaaggttacatgcatgtgtttggatgagagagacactgagagatggcga
ggacttggcagaactggaaccactatgtaaaccatcatgcatattttacacctctgaaggctatgactgagaagcaagtggcaaacccagccaaggctgc
ataactcaggcctgagagaatatcaacagaaggctacaaaatgccttgatccatctatggctcatcctcatgtttaattgttgaTGGTTTGTAATTTATT
ATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACA
AAATATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGA
GCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAAAATAAATAAATAAATAAATAAATAAATAAA
TATGGTTTGTAATTTATTatggcaaaatgtcaaaaaagaccatataaataactttcaagaaacatattaatgggctgtccagtgtgtgaggcagatggct
caccaatatattcagttcaataaaaaatggtttttacattgttgtcttagtcacagagaaatcatgtaatatgcccatagtcacttagtaagttataaaa
caaaaaacattacaatttgaacccaagtgtttgacctccagagatgatctgtgcttagtctctcttctgaaatacacattgggattttttattccaagca
cagtggttttatgtatgcacattatgagctgggatagaactaggtagatatgcagacagaaggccaacaaatatcagttcctaggagaaatgtctgtgtt
ac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 153231541 153231542 1001888 0 + 1104685604346 NA NA SINE Alu AluY aatataaagtgagtcacaaatagaattttaaatttcctactagcctaattaagaaaaaaagtaaatataaataggtaaaaatatgttttcaaatataatt
tatttgcccaatatatccaaaatatattttcattgatttcaacctgcaatcactataacattttttgaatgaaatatacacattattttttatcatacta
ttttctaaatccagtgtgtattttacacttacacctcatctcaattcagactagtcatatcccgagtgctcagtgtcccctgtgggtagtggcgagagta
ttagacagtgcagttcaacattgctactcttccacttacctacacaacctctaaaaagaaatgattaaataattataaacattCATGTTAAGCTATTCTT
GCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAGCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGAAAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAACATGTTAAGCTATTCTTtaaatacaaataagctgatggccagtttttatattagatcaccagggtgtagtattaatagttaagcgtgtactcat
taattacacgaccttgggcatattgcttaacctccttgtgcttcagtttcctcatctacaatataatagaaatagaatattacctacttcttagggttgt
tggaggattaagtaaatcaatatgcttaaagcacatacagtaatgctgggaaaggcaagttctgttggaggattatgtaaatcaatatgtttaaagcacg
tagaacaatctcgagagaggaaagtgctctgtaattgatggcagttattattagtagtagtattacttctatagaacagtgattctcaaaatatgtttta
aaatac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 157722576 157722577 1001889 0 - 1104685603246 NA NA SINE Alu AluYa5 aaaaagaagagtggcctggagcatctctccagagatgacatttggtgccagtggtgatgaggtgggcattgtgaacaatggacactgccttggggccggg
gcagacttcctgggccagagtgctgtctatgtcagagagtccctgaacttacttttggtgtcctcagtgggaaaaacatcaccaatcctcactaaagttt
cataacatctttcagaggaccaatatctctgaatgttattcaaaccgactaacaaagattgaaaactaatagccaactgctttttgaacaattgcttctt
attagtattagaatttctgagtttcagtatataccatgcatgtaaagagtggttggtttatcaatcaatcttttgtaacttttccgtttttACAAGATTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AACAAGATTTatgcagtgcattctctttcttaggattgggttacaagttctatttatgtgtgtgtgtatatgtgtatgtgtgtgacacacacatacacac
cattttcagagacagacttccaaaagttaaaaaaaattaaaaagaaaaaagcaattatttattgagtccctatccatgttcaacaccataaatctcattg
ttgctttaacctatggaaatacaagcagattagggtttttaaaaagtagatgcatagtttttatactgctttcctcataccaaaggaaacaaaagtgtgt
tggaaataaacagctttaactgctttacaaatgagaaaatgttagcagagataggagatgaggcttaattaaaatgttaattaaatatggaagcaaacaa
g Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KCNAB1:NM:172159:11/14
0 chr3 134060414 134060415 1001890 0 - 1104685608995 NA NA SINE Alu AluY aaacttatttctcctatctaatcagtatttgaagtgatgtatgttaattagcttgatgtaattattccatattgtattcataagtcataacttcactttg
tgccccataaacatgtacaacaataatttatgaatttacagttagaaaaagaacactttttaaaagatttccttggatgacatttgacagttgttttgta
ctcataagatgttatcgtttttttgccctatatctttactcaccatcattatcatactgattagagagaaaaatgtgtttttttggtcagtggaaggtga
tttattagcaaatttagaagcatgtagcagcacgacaggtagatctttgcactgttaccccctagacccagggcttacatgccatataagaagagNNNNN
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTTTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCCAGACTCCGTTTCAAAGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAGAGCATATGNNNNNcagaagtaatgtgtaggatcactgaaattaacccctcagggaaaggcaagaacgctatgtgcctcatagc
ccataatttgccaaaagacaggacttaggtaagtacatatttatgataacatcaaggttgtcttggcttacacaagcaacagtaaataaagtcaaaatct
tagagacattcctgggcctggggttagtcagaagtcaacatggcagattagcatccaacatgaagtggcattatcctgtgtagtgtccagtgatgtacat
ttgtttagaagggagtaaatgagattgagcactgggagcaatagtagaaggacacccaatagcccaaagttggaaggagcacaagtgttcattgatggaa
gaatggataaacagaatgtggtcta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:NCRNA00119:NR:002811:9/11
0 chr3 128498237 128498238 1001891 0 - 1104685154840 NA NA SINE Alu AluYb8 tagaacctccctcatgtttgtctcctaacctctctttcatatattccatctctgtgtctatccatttgcactacgtttgaattctttacctttaagctat
gtcatattaatttaatttaatttaaatatttttaaggcagggtcttgttgttacccaggctggagtgcaatggcgcaatcatagctcactgcagcctcga
acttctgggctcaagcctctcatgttgctgagactacaggcatgtgccaccatgtccaactaattttttttattcttttaaatttttaaaatagagatgg
gatctcactatgtttcccaagctagtctcacacttctggactcaaatgattctcccaccttggccttccaaagtgctaggccacttAAAATTTAAATTTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTTAAATTTTatgtttatatttacttcaagaagttgtatttgcttcatttcaaaatctacatgttttgtttgttttcatat
tttcctgttcatgcttatgcattttattccttattttatcttgttaataattttaagcatattggctttatacttgttatttaaatttcttgatatgcta
atccttctcttcctttttttagcctactcttccactcagagactcacttcgttatcgttcatatgggagtccttatcttctggagatgtgtattgaaata
tttattattgaaatggcatgatgcctagggtttgcttccaaggatcgggtgttgagggagtgggtggggtatagataaagcaatattgggtctgggattt
gtagtttttacttat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 131421122 131421123 1001892 0 + 1104685609526 NA NA SINE Alu AluY tactccaaaggtgcacaattagtgatgtggattgaattcctgataggtgaaacagggagagtcagaagacatggctctttattgaggtttaatttctaac
ttgaagtttatggatcagactttggagaaggtgggagataccatactttcttaacactggagagccttcagtttcagctaaatttagttaaattcaataa
acacctgtcaagtgtttattgtccctacatgtgggacatttgctagatacaaaaaagggttccaagatacataagccatggctctgaccaacaaagagct
tattgagtgtgcaggagatacaactggtacaggaaaaactataatatgagataggataagctacaggatgtaacaatgctgcaaatCCCATTCATTCTTT
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTTTACTAAAAATACAAAAAATTACCCGGGGGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAACCCATTCATTCTTTgcacagtgacttggagaggaaacgaaaatagattcccttttcttcacttgatcaatcatcaaaatttattgagcatct
attgcaatcaaggcatgattctagaatggggaacaaaagagacatgggctctatctcttaggattggcctctatggaaaaagatagacatgaatgaaata
atcacagaaatagatataatattactgcagagataaaggtatggaaaggaatacgacaggggatttgacccagcctgtgtagtcagaaaggcttcattga
ggaggagatgggatgaaatttaaaagataggtaacaattaaggaagagagaggggggcaagagaacaacttctatatgagcaggtgctgaagggtggaga
ggactccg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 54110411 54110412 1001893 0 + 1104685020781 NA NA SINE Alu AluYb8 gatgaaataatatgtgcaaacccccatgacatgtatttacctatgtaacaaaccttgacatgtaccccccaaatctaaaataaaagtaaaaaaaataagt
tctccccttaaagcttctgggcaacaaggtcataaaagacactcatcttgggtaaaattgtagttacattcatagacttcaatgctcaatgttttggacc
tttgctttcttacatttctttcaacttggacagtaaattaaaaccattgttctatttttctctttttcagttactagcccagtatttggaatttgccaaa
gctatattcctcagaatttacttcaagagctcctttgtatcggcggagaatgaagaacggagaagaggaggaggaggttgaaagaaactAAGAGATGTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAGAGATGTGGcaactaattgcaacgtgtagattgtatttagctcatgattcacacaaactagatatttgttattaaagaattatggtt
gtttttggtgtgatattagtattgtgctcacatttcttaagaatctatctttagagataggtgctgaaattcttgcagatgaaatgacattatcatctga
gatgtgcttcaaaaacagttaaaggagatatcgataagatggccttgaattcacaattgctgaagatgggtataggccacatggagttttattataatct
tttctctccttttatattgtttgtagttttccattataagttaaaatgaagaaaataagtcaaccaacatgaagcggtcagtgagattcttacggacatc
ccagctttgcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LNX1:NM:032622:1/10
0 chr4 64899341 64899342 1001894 0 + 1104685185727 NA NA SINE Alu AluY gtggagccatatccaattaattgaaagcctcacttgataaagactgatctcctttgaagaagaagaaaatttgccagcggactgccttttaactcgaaca
gcaatttttccctgagtctccagtctgcccgcctatcccatcaggacgtgccaagcctccacaatcacatgagccaccctccacattcttttggttctgt
ttctctagaaactccaactaatttaataaatatggtaatatagtcaagttgtgtgaaaagttttatagaaatcagtgattttaattaatcagtttcaata
gttaaccttttaagctgataatttatgtaagtacccccaagtaaaatatgggttatggtggataacaccaaaggaggaactggagatcattataaNNNNN
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAANNNNNagc
cagacacagaggatgactttcacggttctcactcatatttagaaactaaaaaagttgatctcatgcaagtagagagtagaaagataccagaggttgagaa
gggtgattggatgggaaaggggcatgaagagagattggttaatggatatgaatatacaattagacatcaggtataagttctaatgtttgattgcagaata
gagtgactgtagtcaaaaactgtgtgttgtatatttcaaagtagctagaaaagggaacttttttttttggcagagtctcactttgtcactgagtctggtg
tgcagtggcatgaggatggctcacttcagccttgagctcaagcaatcctcctgtctcagcctctgaagtagctgggaaggagacacatacca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SRD5A2L2:NM:001010874:2/12
0 chr4 66420977 66420978 1001895 0 + 1104685186247 NA NA SINE Alu AluYa5 cagtgagctgagattgtgccactgcattgcagcctgggggacagagtgaaaccctgtctcaaaataataataataataatggcattcaagaactaagtaa
aaataaagtgattcttaccactcgggccccactaccatagagaaaccccagcacataggaaaaatgagaatgctaagaatatttattgacaaaaaaaagt
tcatcacaataagaaagtatcaactgaaatatatgtaaaaaaataagtacataaatagtggcacatttatatgatggattatataaagttctcaaagtga
acaggtagatataacataaaggagtgaatctcaaaaacaaaatatagaaccaaaataagaaagactacatgttcacaaaatgtgataaAAGAAACATGTC
CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAACATGTCaaataacactatgtttttcctatagatgtgtatacagataaaaaattagaaattctcaccgtattccaca
tattccagatagtgtttatcatgtctggggtatgttacaaagaaaaatggcaatggaaacaacccatagagtttcaaatctacctaaaatatttttagtt
ctttaaatatatctgaagcaaatatggcgaattattaatactttatgaagatgtacaatatttaaaattttaagtttatatactttatattaaattatag
tttatttctacataattatatttggacaactttattcacttttaaaattgattaaataagataactaaaaattatctgtatggacaatagccacaaatag
agcatatactccatgaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 67646487 67646488 1001896 0 - 1104685186534 NA NA SINE Alu AluY aatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagatt
ctggatattagccctttgtcagatgagtaggttgcgaaaagtttctcccattttgcaggttgcctgttcactctgatggtagtttttttgctgtgcagaa
gctctttagtttaattagattccatttgtcaattttgtcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgacctga
atggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatctcgaattaatttttgtAAAAGTTGTAAGGA
CGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGC
CTGCAGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTT
GTAAGGAgggatccagtttcagctttctacatatggctagccagttttcccagcaccatttatgaaatagggaatcctttccccattgcttgtttttgtc
aggtttgtcgaagatcagatagttgtagatatgcggcattatttctgagggctctgttctgttccattggtacataacgaaatgaaggcagaaataaaga
tgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgccca
caagagaaagcaggaaggatccaaaattgacactctaatgtcacaattaaaagaactagaaaagcaagagcaaacacattcaaaagctagcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 61507704 61507705 1001897 0 + 1104685184761 NA NA SINE Alu AluYb8 gaaggaacacttttaataagatgtgtctctctttgggctacaaaacaggatgataattggtagatatgagtttaattcatgaattttaaaagcccaatat
ttgtattgggcttttaaataaccagtcgtttaacctggattactgtggacaagttacttaagctttcagtacctccatttcccatgagtaaaatgagaat
agtaatggtatctgtctactaagactatattcacaactaaataaggtcatctatataaagccttaacaatggtatctggaatagagcaaatggaaaatct
tactattatcattagtaagattagaatttatatgatggagccagtggtgcaatggacagcacgtctgactatggaacagaagattaAAAATTTATATATC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTTATATATCtacccatatcatattattagtaatattgttatatattgaggtatgtaaaaggtacagtttcctcatgaatg
ttagtttaataaaagaaagagacaaaacttctcttgacttccttctcaatctggcagaacctcacctatacagaaattatcgctgacatctataggccca
atggtactaaagggcaaggagaaggctacactaaattgtgtcatctatgtctactgtatcttgctcctgttcattcttagaacgctggctaaatagatca
aacagtaatagctgatcagtgggttgccccttctcaccattccatactccaccagatacataaactttcaaccatatcattttaaagatatgtggtttat
ttccttagtttgtaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 35397256 35397257 1001898 0 - 1104685759521 NA NA SINE Alu AluYa5 tatgtatataccaaattttctgtatcagttcatctgttgatgaacatttagattgacttcatatctttgctattgtaaataatgctgcaatagtccaggc
ccagtggctcatgcctataatcccagcattctcgggggcctaggcgaacagacagctttgagctcaggagtttgagaccagcctaggcgaaatggtgaaa
ccctgtctctacaaaaatacaaaaattagccaggcattggtggctcgtacctgtagtctcagctattcaggaggctgagaatcccctcgagcccaggaaa
gtggaagTTGCAGTGTGCTGAAATCGCACCACTGCATTCCAGCCTGGGCAACAGTGTGAGGCCCTGTCTCAAAAAAATAAAAAATAAATAAAAATAATGC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGACGCCTGTAGTCCCAGCTACTCGGGAGGCTGATGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTTGCAGTGTGCTGAAATCGCACCACTGCATTCCAGCCTGGGCAACAGTGTGAGGCCCTGTCTCAAAAAAATAAAAAATAAA
TAAAAATAATGCatgaacatgggaatacatatatctctttgatataatgatttgttttcctttggataattatccagtagtgggattgttggatcatatg
gtagttcaatttttagttttttgagaaatcttgctgttttccgtggtgactgtgctaataatttacgtggccgccaacagtgtttgagttttgtcttctc
catatcctcacatacgtctgttattttttgtctttttaattgtagccattctaaatggggtaagatgatattgtggttttgatttgcctttgcttgatga
ttagtgatgctgagcattt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 36001600 36001601 1001899 0 - 1104685759676 NA NA SINE Alu AluYb8 aggaaagtggaactgcagacatgaggataacatgtaagggagacgcatggagtgccagagttctcccttctccatccatccttctcattggaaagagtga
gaagattttggaaacttttagaggttaaaaaattaacataacatttctacttaccaagaacctagtggctttcttctgtaattgataggggaagggacat
gatgcaccaaacatgttactggaattaactctagtatagaaagcatgacactaagttatggaaaacttaacaatcacaatgtgggcactgttccctcaaa
aaccacagcaagaacaaagcaaaacaaaacaaaatcctgatttttcttataggaatttcttctaatgtgctctttcaatctgcttttTAAAATACCTAGC
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAA
ATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGC
AGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAATTAAAATACCTAGCataacataataagttccatttgatccttcaaccctaatataattttgtaaaattactgcaactgagaagtctgagtaga
attaaaatgcttttggatgtaaacattttttaatggttcagaatcatctcatttatctagtcaaaattgctttggtatttcatattggtggaaaaaataa
tataggaacaacattatccctagcagagcagtgagatggtaatgaaatccaaagtggtgaaagtggcgattctgacgaactgattcttgcactgccatct
gcctgcttcctccctttgacacagcaagttatttaatgtggtgagaaagaaagtgttgaagcagtatcattatttactagaaatcacatgtcaggagttc
agtttaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FLJ16686:NM:001136536:7/9
0 chr4 11848393 11848394 1001900 0 + 1104685313240 NA NA SINE Alu AluYb9 aattcgccctccccaacacttccaagttttctactattatggaatcagatggaagtttaagatttcattatcaaaaccaggtccatgttcagatgaagcc
ccttttgtacgacaactctagtgcagtttctatcaatttaaaaatctgtaaactaaagagacaggagactatatacctcccaactctctctctctctctc
tctctctctctctcacacacacacacacacacacacacacacacacacacaattcaatagtgggacaggcacgtgacaaccactgtagtcattttcattc
aaaggcacacaaaatagaagacaccagataataacaatttctaaaatgcaagcaagcacacatcatcagttcttgattagaattccatgctactcNNNNN
TTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCG
CTTCCCGGGTTCACGCCATTCTCCTGCGCTACTCCTTTTTNNNNNttacccttgactcttggctctgcactctgtggtcgtgccccaaccttccaaatca
atcagttttctacatttttagataggatgcatgtttgtaactaagtgtccctctcagccaactttctgcctattaaaatctggtttctcaaaagtctatt
ttctctttatactatctgttcctttcagtccttttctcttaaaaactttctagagccaggtgtggcagctcatgcctgtaatctcactactttgggaggt
caaggcagaaggatcacttaaagcctagcttgggcaacataatgagatggagatcatgtctccacaatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatgtgtgtgtgtgtgtgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 1291833 1291834 1001901 0 + 1104685132462 NA NA SINE Alu AluY cccagagaccctgggaagctggtgcgtggctcagtccaaagccaaaggcctgagaaccctggggggatgctggtgtaagtcccaacatccaaaggccaga
gaccctggagttctgatgccaaagggcaggatcccagctccaggagggacaggaaattgcttatcctctgactttcttgttctgtctgggccccagcgga
ctggatggcaccacctacctggaggacatcttcccactcacccaccagtctcctctggaaacacccgcacaggcacacccagaagtaatgcttcacaggt
tctctaggtatcccaaatcccatcaagttgatgcctgaaatgaaccattacctgtgcagatacggtcatgtgtcacttacatgAAAAACTCTCAGAAATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAACTCTCAGAAATGcatcgttaggcgactttgcggtgtgaacatcgtggaatgaactaacaggagccagatggtgtggctgctgcacgcccgca
ccgtggtacagcctgtggctcctgggctgcaaacctgtacagcatgtcactgcactgaatactgcaggcagctgttccacggtggtgttttgcatggaac
acatcgaaacatagaaaaggtgcagtgagaatgcagtatcctaatcttaatgggaccactatcacctgcacggtctgttgttgaccaaaatgtcgttatg
tggtgtgtgactgccacgttttctttcttcattcccctggtgatggacatgtgggtggcttctgcctcgtggctgccatgaacacaggtgtgcagatacc
tcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MAEA:NM:001017405:1/9
0 chr4 10331391 10331392 1001902 0 + 1104685312839 NA NA SINE Alu AluY aaaagatcaataaaatttacaagtttctctgaaaaggctgacaaaaaacgaacacaaattaccatgactaggaatgaaagattactaggaacatcactac
aaattatttaaagacttctcaaaacccgatgaaaaaaattaaattagaaagtaggctagagatacgaacagatatttcggaagaagatacgcagatgaca
aatgagcgcatgaaatgttcaacatcattaggtattaagataatgaaaattaaaaaactgcaatgagttatccctacatacctattagaatgactttaaa
aacctccgcaaaacgtgtaccatttactttctactgtactatgaaaacgtaatgaggtacagaaaaaccacaagagagatAAAATAAAGAACTGAACAAA
ACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACC
CGGGAGGCGGAGCTTGCAGTGAGCCGAAATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATAAAGAACTGAACAAAaatgcatacaaaaaaaaatagtgacaccaccaaatgctgacaaggatatgttgaaaatggatcacacataca
ttgctgatgggaatgtaaaattgtacggggacgctggaaaacagcttgacagtttcttaaaaaaataacaactaacaattgcactcctgggcatttatcc
cagagaaatgaaagcttatgttcacacaaaaattggtacacaaattaattataatattaaaaactggaaacaatgcaagtgtccttcagtggctgaatga
ttaaataaactggtacatttgtatcatcacatactactaaacaatacaaaggaatgaattgttaatacatacacaacttgggggactttccagagaatta
tgttgagt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 148273400 148273401 1001903 0 + 1104685730743 NA NA SINE Alu AluYa5 gaggatgcagctgaatactggtgaataccctttgcattgtcctctgcttcccaggcctcagaaacatgactttctttcttttccctaggagaagggagat
gggagaatgaagaaatagagacttactatggcttaactcattgcattcatctctgatttaaaagcttggagtcagccaagatgctgaatcctgaacatac
ctgccctcataatggacttatgatatcctctaagggtactttgttttctaggactcaattttactatctgtaaggtaagcagataagattaaacaggtgt
tttttcatctgtgctctgagaaactttaaggactcagataatttgcctaaggagagggacttggttttatgtcgcttgcatttggtcttaGAGTAAAGCT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAG
AATAGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGGAGTAAAGCTtccatttaataggacaaatacacatttaaaaatgcagtgtttgaaaaccactggctagatgat
ctaagtgatctgtaatgaggcctctccagctctgacactttgtaattacaaaatttcttcaacttgcatgtacttttcaataccattctcacaaagcaaa
atgcacagacatttaactccagttttaccgaaaatatgagtcaacatgaaaattctgggaaggctgagtatgaaaaggtataaatggctttgatttcttt
tcttccaaatgaagctttcttttttcagattttttaagagatgacaggcaaagagtatgagtctgggaaagtagcttacactagaaaaaaggagacctca
tgtctattcactgtcaaacacgtactc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 126197214 126197215 1001904 0 + 1104685448566 NA NA SINE Alu AluY atgaaagacactaaactggttgagatgttctcattatacattagaggtcaattatttctctgagaagaaaggcatatatcattatgtatgtaaaatatat
aataaggaaatatatattgagattaggaaaatgtataatatattgagaagttggataagaaagtagaaatgaagcatgttgtcctcaaaatgaagctcag
caattgtattacactaaacactattaatgactaagtctgtacatagtgaaagcaattcaattctattttctttttctgaaacagttataattcctctatt
gtacctccatgttacttatcagcataataaactttctcaaagtaaaacattttcagaaaaaatatgagtaatatatatgagcttAAAAATGTCAAATGAG
GGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACA
CGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAATGTCAAATGAGcctttctgttatggccaattaacttgtatattcctttttttccccctcaaaaaagagattccacttgaactaaggaa
aaattttcaggatatgagacacaactacacatttgaatatttttttcttgtataagaaattgactttacaaagctataaactactctgagtttatgggct
tttggaaataatgacctccattagagtttgtaatgcattctgggcaatatcataaaaaatatgtcagtagagtaatttcatcctcaaaatgatcatcttc
tgtgagtaataaattgcgtgcatatattcataaaagactctctgtggaatattccaaattcatatgcacataccttcactttgaaattttacaagaaatg
aatgaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 138025974 138025975 1001905 0 + 1104685451403 NA NA SINE Alu AluYa5/8 gaaaatacagaaaaaaatcaatctgtatatgtatctctctctctatctaatctacctcatctatctacctacccattctctaaaagccatgctataagcc
agagaaattaactgttaaagttttgctatatttcattcatatatttttatttaaaaaataattggaagcatattaatacaatatcctgcaagcttctttc
tttcctaacaataaatcctatatacgctcccaaaaacattaaatatccttaggaaacatgattttttaatgaatagaaagtttccattaaataagcatac
tggacttattgaatcaaattttattaataaatatagattattttcaccttttacttactagaattaaaaaaatatatatttacattatctaAAAAATGAT
TGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCG
TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGATaaagtagtacctaaaagttttacaaacactgcaagctgaagttttacaaaatat
tattttaaaatgtctataatattaaataatgaaataaatgcaaattaataagcagtacagtttttttgtgtgaaccagaattttttattgatttccattc
aattttacaattgtaaacataaatatgtattataaagtgcctttatataatactttaatgaagttactgtacatcattttgtccacttacacaggataat
ttgttggactcttttttatcaattagagatgttaacatttggaatgaaatatatagtttgtgtatctttttctcagctgataatattaatttaaatttaa
tttagttttaacacaattctcattgaacctaacatca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 133337291 133337292 1001906 0 + 1104685450275 NA NA SINE Alu AluYg6 ttctagccctttcaattttttaaaatattatatattctgccaagagataaatcagaataaaattaagtattgactatgccaacttctttctttcaaaatt
ttactggctttccaccaaactacaaaacaattattttgacatacatttcagacactctgcagtctaattatatattcagccttattaccccttttttatc
tagatgacttattggttctagccatatttaaaagtagttgagctatttgttggttgattaagttgttggttgcataccaatagaattagaataattccct
caaaatgtcaatattttatcctttattacaaaagagttggctacataataaaattcttattaattaaaagtcaattccaaaggcatgAAAACATAAGGAA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTATAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACATAAGGAAagtgcattaaaaccaactggcttctattcaggtaaagtatttattataattttgacacaatttaagcaatattggaacta
tcagttgtatactttgcaaatatcaagttaattacatagcatgcaatataatgtaatattagattttctgcttataataatccatatataaaaaacatac
aaaacagcaataaatcaaagataattaatcctctaatacctatcaagtggtttaagatatgttcattaaattaatgtattttggaagaatgcataagaaa
aaaagttatgaaaatcatagcatatgctaaaattaacaaaagtaagttgggggaaaaatctctaacaacaaaatgtaaacactagaattgataatcagtt
gcttgaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 139444665 139444666 1001907 0 - 1104685451729 NA NA SINE Alu AluY gtgacatatatggaatataagccttatttttacaagcattcacatagtcactatttacatagtcacagagacatagaatgtggtcatattttacataagc
ttgagataatgtgacatagcacgttagtaaaaatctcactttatgggcatgaactaatgctttaaaataaatctaagcttttttcccccgaatttttaag
aattgcattatgtgagagccatggaatcagtctgaaggaattataaaacaagtcgttgctcttgtcacaggataatgctgccttgtcctttacacagacc
cccagaccgttagtgacacatctccgaatgatttgcttaactcttgtccttttttttttttttaacatatactgttatctttAAGAGTTTTTAAACATCT
AGGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTTTTAAACATCTatagcaatgtcatacaagtatttactgggaaataaagcatatgctaatactaaaaa
acactcgactctcaggaatgttggaaaggaagttaggtgtagtatacagtatgcagaagtcagccataggtagccttttaagatggcctccaatgatcac
ctccgccttctggtatttatagccttgtgtaatctccttcccttgagtgtgagctggagctagcaactcacttctatcaatagactatggcaaatgggat
gggatgtcgcctctgatattaatttacaagagattgacttcagccttgttggcatattccatctctctctctctcttcagcactttttgcttgtgtgttt
tggtaagatgagttgctacgttatgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 144640304 144640305 1001908 0 - 1104685729963 NA NA SINE Alu AluYa5 tgccacataattagaaagaatatgaagtaaaagctgtgtttccaggttttggtgagagaaaaattcaagcaccagaatgagaagggtaaaaatacaggct
cagaagagaaattgctgaaaaccaagcacattcacaagggcttatcaactctgttccaatgcagagtgaagaggggacccaggaacctgattgcaccctg
ggaaatgtgaagctctttgtgaaatgactattaaaatggcctgaagaggttgggtgtggtggctcaagcctgtaatcccaggactttgacaggccgagga
gagtggatcccttgagtccaggagttctagactagcctgcgcaacatagggagatccccatctctacaacaacaacaacaaaaattAAAAATTAACTGGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAAAAAATACAAAAAAACTTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAATTAACTGGGatggtggcgtgcacctttagtaccagctttttgggaggttgaggctggaggattgcttgagcccaggagttcaacgttgcagtga
gctatgatccccagtgcactccagcctgggtgacggagcaagacactgtctcaagaaagaaagagagagagaaagagaagggaagaggagaaggagagaa
gaaaaggaaaattaattgtaagggtattggggcctaactaaatgtagtgtaaatattaaattgcaactgaaatatcccataatgagtatgtatggttaat
gtatcttatgttagtccttatgtaaactaagcagcgttccaaaaatagactcaccaaatttgttctacttaatttttttgaaaagtctttgatagctctt
a Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 134707596 134707597 1001909 0 - 1104685450650 NA NA SINE Alu AluYa5 aaaattttatgctttttttgtgatgtttatgtgtcctttgtttactgtctttgtgctttacagtccataaaagtaatcaatctttattctgtcactcagt
taatgtttcttaagttaacatttatatcagaacagttttagattcacaaaaatattacaaagatgctacaagacagttcccatataccacacacccagtt
caccctatttattaacatcttacattaatattgacatttgttagaattaatgaaccaatattaactcattgttattaatccaagtcttaatttatttaga
ttttcccagtttttaacaaaagttatttttctatctcagcatcccattcagatcactacgttatattcaattgtcatgtctccttAAGATATTCTTTGCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAT
ATTCTTTGCCtgatagtttctaagtctggccttgtttctgatggccttgacagttttgcagagtatttgtcatttgttttgtagaatttcccttaattgt
tttttgtccaatgttcctcataagattaaactggggttatgtggttttaggggaaagactacagaggtaaagtgtcatttttatcacatgatattaaggg
tatatactataaatctgatttatctccattgatgttgaccttgatcacctagctgatgtagtgttgactcccattactcttttaaacataaagaaaagta
ggtgccaattgcataaacttaccttaagtacgcaaataaaaactaaatgtcaagataatttgaaggtacaatgattttttcaaatggtatattat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 86803526 86803527 1001910 0 + 1104685669338 NA NA SINE Alu AluYh9 cgtgatgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattct
ctaaagaaagtcattggtagcttgatggggatggcattgaatctataaattacctcgggcagtgtggccattttcacgatattgattcttcctacccatg
agcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacgtcccttgtaagttg
gactcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtttgttattggtgtaAAGAATGCTTGTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCG
GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAGAATGCTTGTGatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattgtgggctgagacaa
tggggtttcctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcatttcctaattgaatacccttgatttccttctcctgcctaat
tgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgc
acattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatatgtcccatcaatatctaatttattgagagtttttagcatga
agggttgtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ARHGAP24:NM:001025616:2/10
0 chr4 110141449 110141450 1001911 0 + 1104685674262 NA NA SINE Alu AluY gtaaagtgttatataaaaagtgccagacttggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggaggatcacctgaggtcaggagttt
gagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatgatggcacaaacctgtaatcccagctactcaggag
gctgaggcaggagaataattttaaccccggaggcaaaggttgcagtgagctgatattgtgccactgcactccagcctgggcaacagagtgagactctgtc
aaaaaaaaaaaaaaaaaaaaaaaaaactatacacataacactttgtcaggattcagaaaaagggagaaattacacttagttaagggagagAAAGACTTCT
TCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAGACTTCTtaatagaagaagcagcattcaaatacaaaggggtatcctatttggatgtgtggaaactgagtgtgtctaaggattcggaggaaaggc
tactggaagaaaaggcaaaaagaaaaagaagatttgaagagaaaagaagtaaatggtttgatttggtttggtgaagcatagtctagaaagggcattaatg
aaaaattaatggtagattaggctagaaaacaggccagataagaggatctgaatgtcaagcaagaatctagattctattgtattctaaatgaaaaccatta
agactcaaggttttgaggtcagaagagtgacataatcagaactatgatatataattgtattaggatactactggttgatagtacactcaatcctaaatgc
ctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:COL25A1:NM:032518:5/34
0 chr4 119994184 119994185 1001912 0 - 1104685446812 NA NA SINE Alu AluYa5 ttacaccataggatagtcacaaaatggctattgcaatagcgtcagaccactctctgtacaaagtatggtatccagcctctttcctgcacatattccatgt
acacctaatctgtaatttcccacatttccccatgacactgctaattggcagcctggtagcctggcagcttcttacatattgagtcttgcagcacaggcca
tggcataattggctacaatgccaagactgtaggaggcaatgatgttgaatacttctcccgctacccctaagaccagaaggatttaactcaccctagccac
ttgagtccaaatgtacattgttttaccagttatgactctgcatactgtcctgaacaggaggcattaattattctgcagttAGAAAAGTTCTAAACTAGAG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAG
AAAAGTTCTAAACTAGAGgataggcttatctctgtctttatatgggttaagatgagagttctgttttctgaaccatagtctcacacttctgggtgaacct
agaatagaaattgcaattgccaagtttaggtccatcaaattcatgccgacattttgttgcaatgcttaatactacttatttaaatcaggagggggggaaa
tatcctaaatttgatggtatatgaagagaataaacataagtggggatcatcttgggcaaactgggtcataatgaaacacttacagcagtttaaattcaca
atggaaataaattcaattcaaatctacaaacatctgttgagaacctactaagccccagaacttttgctatgagctgaaaggaaaatacaaataggaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 7204639 7204640 1001913 0 - 1104685099028 NA NA SINE Alu AluY ctgcagtctcagctacttgggaggctgaggtaggagaattgattgaacccgggaggttgaggctgcagtgagctatgattgcaccactgcactccagcct
gggcagcagagtgagaccctgtctcaaaaaataataatcataattgtctttaccttgatggagcttatgttgaataataaagtttatattttttattttt
atcttttaattatattttccattaactttttaaaatcccctcatttaagagggttcttttgagaattaaatgaattaattaatgtaaatgcttataagaa
tgccaggcatttattaaacactgtataaacctcagctattattattaagatcatatatacttgtaagacaggtgattaacttgttAAAAGTAACTTGTGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGGGATTGAGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAGTAACTTGTGGagttccagattgctgataaattagcactgggaattaccgtattttatatacgtgccttgctatttttcagatctgggagaaagtaca
aaattcgtccaagaacaactttctaataacttattatgattgatagaatcttcttggaataatccagtggctgactagtcatctgaccaactgataaatg
caatttgtaatcaataacaagcatcctccagttgatgtaatttacaatgttatttgttagctggatgagtttggaaaagttacctaacctctctgaacat
ctgtaaaattgagatgtggtatgtggcatcacagatggacaattatatgaaaactgtagagtctggatgtggttgttcacacctgtagtcccagccac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 17745307 17745308 1001914 0 + 1104685545897 NA NA SINE Alu AluYa5 tttgaatggataaagtggccaatttcttactatttcttttgtacaacctttgcttgtttttaacctagactctttgctttgtgttgcttgctttgttagg
catggcaagtaatagaagatgtgggttctaattttagaagaaaattatccttggcaggcataaggaactagaaatttggtgctcagggagccaattttta
atcaaataggaaaatcaaaacatttgaatttaaaagtgtctgaattttctgcctcattgatttaagtttaagaagttggatgagctgaagatagtacatg
catagttcattggatttgggttgaactacttttacttagtatctgagacaatttatttttcatttaaattgtttttatctcttCTTGTGTATATTTTTCT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAAAACTTGTGTATATTTTTCTaataaagaggttggatatggagcatcattaaaactaatctgcaaattaacacctgtatctctc
atggtgttcactgcaaataataatttccactctagctgtttacagcctaaagggatttattatgggatataaggttgcttatgtaatttcctggagtgtc
agataaccaagcgtgtatactgtgctatgacatgggactcttccagtggaatccactgttgccgctgtacctgcttcttggcaaccagaaaactagggac
tgaaccttaagaaaacctcttctgccaccaccatcacaggagaccacagaagagcttgaagcccatggtgccgacttccatcttccaagtctcagcggct
atatctgcttagtagatgtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 34149027 34149028 1001915 0 + 1104685699835 NA NA SINE Alu AluYa5 cattaatttttaataataactaggcaatcacaataaataatcaaattcaagtcattaaatttgagttaactggttattcagcagtccatgaagtttggtc
ttttggcccttttctttcagtaatgcgggcataacacatggtgacagaggagcagcttggtaaccatgagacagcatgaatgaggacgaaagtcaactgc
tggaaattagagagggaaagacaaagataatctaattcaatgaggttatcatggagaccctccctcagtttcatgctttcttcccctagacttctgttat
ataagagataatccttcatgtttaagccattttcagttgatttttcaggatatcccatattttcccaataaaaagtacctaAAAATATTTAAAGTTTCTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAATATTTAAAGTTTCTGctattggtaaccattaagtgatgccttgcttttgcttgtgaatataacctgcaagacctatttcaaaagcaagaatt
ctagaagcaggataataaaacaggaattatatcattcagtggatgagtctttgttttgaaacattagccagataccatgtggtcaccaggcagattcggt
gaacaagcatatcaaaatgacacattcaggcctataaagggctagtagaagattttgatactaaccactcctttctgtacatgaagatcaagtcagaata
tgttttgtttttctctttgtctcatttttaaccttctattgtcactctactgcagatagcaacaatatatatatcagagaattatcagttaatgaaccag
tacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 14738944 14738945 1001916 0 - 1104685151889 NA NA SINE Alu AluYa5 ctggaatgtaagactaaaagaccctttcataaatagtaattctggtggtaccttctcaacctagagcaatcgtgtgaactaaggtggtttctacaaaaca
cagaaccacgattgggatgtaaattacttttcactgtgaccacagtgatggcgaactacatcactcactaagggtggagagggacttctcctcctcatct
tattagaataacaaatgaccacccacctaaaggctgcaccagcccactccgtgcccacactgccctgcgtttcggcaacatgtggcagttctgcagcaaa
accttcaattcagtctctcagatttatcacaagaacctcacatgccctcaagtggcaacaagctaaaattacaattgggcacAAAGAACTACAAATGTGC
TAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAGAACTACAAATGTGCgaaaatactggctacacagatgtgagctgggaaatgaggtgaagggaagcccagaagaccggctgagcatctgggga
catgatacagttatctaaaaagtaggtacagtactcaactgaattactcaggagaccctgaagacctaactacacagagagaaacaattgtttctgattc
ccttcacacactggtcaaacagttcagggttgtagacttccaggaaatgcagaaatccttaagacaattttaaaaaatgaagcatgaaaaaagccatcag
aaaagaatgaagtcaaatttattcagaagaaaaaagtgaatacaacttcaaacgctttcagaggtcacagcacatggaacacacgtaaataacctttgtt
ttcca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FAM105B:NM:138348:4/7
0 chr5 5648247 5648248 1001917 0 - 1104685098632 NA NA SINE Alu AluY ccctctttaagggtatttattgtaaatttcattaacctcttatcttgttattgttttatttcttccatttagtatgttccactaatttttttctaattca
gactcaaggcttggttcattaatttgtcatctttcttcactatggatttgagacaataaagtttcctataggaatatgttaaactgagtcataagtgttt
tagtatgtaacatttatattataatttggttccaaagttcttaagttttattataatttattttttgacctatgaggtaaataaaagtgtgttaacagct
atttccaatccatgactgtttttatctgcatgttgtttactgattttcagtttttatattacagaggcaaagaatgtgttttctataatattAAAAAGTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCGCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGTC
tctatattcagaaaagaataggactaaaaataatcacgtcatatcttcacagaccttgaagagtgcagggcaacatcagaatttggtaaagggtcaatgg
aactaacagaacaagccatgtcaggtggtgctctgagccagtcccaggacaagaccaggtaatcccatcatcactggaagcactaggaggatgccatctt
ataggcaaacattttaaataattattctccatgttgttctttttttttttttagttaacatattcaacacctcacacagttaccgttttttgtgtgtggt
gaaaacacttgaaatctactctctccgcaaatgtcaatatacagtacattttattaactatgtcaccatgctgtacattaggtcttcagtac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 186598918 186598919 1001918 0 + 1104685742035 NA NA SINE Alu AluYa5 tatcttttgtatcataaaaatagaacatagtaaattaatgttttaaaaaagtacacccagcaggatagatttaagaatcatatttatattaaaatgtaaa
agatttaactctgggttattttcaatttgtgaaatttgtgctatgtaatttcaaactctttaattcacagaaagcgaatgaagagcaccatcgtttactt
aaaggagcaccatttaagttaaatcttcacccaagggactattttgacgctaatccttatttttctgaggaatctttaccaccaattaaaaaagaagaga
agaagaaaacaatttcaaatacttttaaaccgtcttctcctggtaaaaaggtgagtttacaattttaggatgaaaaaattaagtattaAAAGAAATACTG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACTG
TGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAT
ACTGtctcttgctatcaaatgattttttttcccatgtaaataataaacttttgttcgtatggataccaagaatcattggacccatttttacaaaattaca
tgaaatcaccaagtatgaatagtgtaggggataatgaagcccttgtcatgaagtaattattagtctcttcaaatgtatttgaatttataatttttttttt
tgagatggagtctcactctttgcccgggctggcagtgcagtggcatgatctaggctcactgcaagctccgcctcttgagttcaagcaatactcctgcatc
agcctccagagtagctgagattacaggcatgtgctaccatgcctggtgaattcataatgaatttttgaagtgcttctctagaccctaggtct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:C4orf47:NM:001114357:5/7
0 chr4 189552035 189552036 1001919 0 + 1104685743155 NA NA SINE Alu AluY ctacacgttgtatggtctccccatatattaaatgttagtattttattttattttataaaacgaaataaaaatagataaagttggccaggcgcggtggctc
acgactgtaatcccagcacttctggaggccgaggcgggtggatcacgaggtcaggagatggagaccatcctggcgaacacggtgaaaccccgtctccact
gaaaatacaaacaaaaaaaaaagaaaaaaggaaaAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG
AATGGCGTGAACCCAGGAGGCAGAGCCGCAGTGAGCCGAGATTGTGCCCCTGCACTACAGCTTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
ATAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAA
CACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCAGGAGGCAGAGCCGCAGTGAGCCGAGATTGTGCCCCTGCACTACAGCTTGGGCGAAAGAGCAAGACTCCGTCTCAAAAAAAAAAAAaaa
aaaaaaaacaaaaaaaaaatagataaagtttctcatattttcttctacacctcaactgattgtctttctcactctccttgagggccacatttagtctgct
tgcaggtgctaacacggggaatgatgatttggtcagatgcatgttttcaatcactcctcacagtggaagataagagttgagggatgcaggattcaaggag
ggaagtgtaggaaccaagatattatgatgga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 1638518 1638519 1001920 0 + 1104685336157 NA NA SINE Alu AluY tactcggtgtcctccagcttagttccaagttttctgtcgctccggtgacccttcgacctggattcgagcccccatgtgtgggcgccacttgctgagacca
gctcggttgtggagaccctaacccagcggcactagaggaattaaagacacacgcacagaaatataggatgtagagtgggaaatcaggggtctcacagcct
tcagagttgagagccttgaacagagatttacccacatatttattgagagcaagccagtcataagatttactaaaagtattccttacgggaaacaaaggga
tgggctctggctagttatctgcagcaagagcatgtccttaaggcacagatcgctcatgctattgtttgtggtttaagaatgccttTAGAGAGGGTCTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACCCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCCCCAAAAAAAGATATCTAA
CTAAAAAAAATAGAGAGGGTCTCTTaacaaacaaacagctctcccctctcccctctttccacggtctccctctgatgccgagccaaagctggactgtact
gctgccatctcggctcactgcagcctccctgcctgattctcctgcctcagcctgccgagtgcctgcgatggcgggcacacgccgccacgcctgactggtt
ttcgtgttttttgggtggagacggggtttcgctgtgttggccgggctggtctccagctcctagccgcgagtgatctgccagccttggcctcccgaggtgc
cgggattgcagatggagtctccttcactcggtgctcaatggtgcccaggctggagtgcagtggcgtgatctcggctcgctgcaacatccacctcccagcg
gcctgccttg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SDHAP3:NR:003263:3/7
0 chr4 179435323 179435324 1001921 0 - 1104685739558 NA NA SINE Alu AluYa5 agatgaaactaaaagagttcctgatgctctattaaggttatcaaagagacctggcaatacccatagaataaaagtacttggatttgagggtattatactg
agtaaaactaaccattacccccatctgccaactctgatagttaatcataaatacttgtgtgtgagtgcacctatgcatgaactccccctaacccccacca
ccactctctctctctcactgtcacacacccctacaccacacacacactcattacatcaacaaataaaaattaagcactttctgtattctaggctctgtgc
aggtaaaggataatgaaaaacaacttgtgccctgaagggctgatagcacaaagaggtgagaggcatgtaaaaaatcatttttAAAGAAGGGATGACCATG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCCGGCTAAAATGG
TGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAGGGATGACCATGcgacacgcattcagatagcgcagaagtagaaagtagggttttgaaatttcttaagggtgttggtgagttttacaaaaa
ataagtgtccatgtgtgtctttaaatgaggaaaaatgcgaagtcattttaaattaaacattctgggagaaaaaaaaaacaattgtgggtgtcaggtcaga
aaaagcttccatggaaatagaatagtgttcaatgttctgagtagacagctctataagctgaaaacattggctaaattaattacttctgtgaattctaaga
tagagtatatggcccaaagccagtctcaaaatagtcaattttattcttttctggttttaaataccttaattattgcctttattattttctactttcttat
ttta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 164977095 164977193 1001922 0 + 1104685735312 NA NA SINE Alu AluYd8 cttctttttataatgccaaaaattgtcatggagccctctagaataaacatctttccatgtaagtggaaggagctggctttatagtgacccatcttcagat
ccttacctacatggtagttgcaatttatttatttatttatttatttatttatttatttatttagagatggagtctcgctctatcatccaggctggagtgc
agtggcacaatctcggctcactgcaaactgcgcctcccaggttcacgccattctcctgcctcagcctcctgaatagctgggattacaggcacccgccacc
acgcccggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgccagcctNNNNN
TNNNNNNNNNNNNNNNNNNNNTGCCTTGGCCTCCCAAGTGCTGGGGATTACAGGCGTGAGCCACCGCGCCCGGCTAATTTATTTTTTTGATACACATTTA
CTCTACGTTATATTTCAGGGCTTGTTAAAAGATGCCTCCTAACGGTGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGC
CTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGAAGGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCAGCCT
GGGCGACAAAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAANNNNNatgcctcctagtctctctgctgtgaggaagaaagttctaccttta
gaataaagtagacaaaataaggaaacagagggtccatctggccaaagctgagtaatagaagctgtagtcatcagcagaggtaagtgtgacccccaataaa
cagtgataccaagtgcgccgccattggcagcaaagagcactgagtctgcttgatgacaggactacaatagaagaattattcctgatctcatgtgagttag
cccattagccccctggaagcctcacagagtaactggagaaaaatttgaggaggtctaattttaagtgaccaagttgaagcagaagccattctaatgtgaa
ttttaataattgctcgtatataatacaggactgaattagagaaatagaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 175448163 175448164 1001923 0 + 1104685738234 NA NA SINE Alu AluY gtagagatggggtttcaccatgttagccaggatggtctcaatctcttgacctagtgacccgcctgcctcagcccccaaaagtgctaggattataggcgtg
agccactgtgtcctgcctctttcttcttcttaatgaatttattgctataaacacttctcttattctgcttttactgcatcctatatgtttgggtatactg
tgttttcattattgtttgtcttgagatattttataatttctgttttgatttattctttgacccagtattatttaatagtatgttatttaattcccctgta
tttgtgaatttttccattttctttctattattgatttctagtttcattccctcgtgatcagacaaaatgtttagaatgtttttagtcttctAAATTTGTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAATTTGTTaagacttgttttgtgacctaggctgtgatcagttatagagaatgtttcatgtccttttgagaagaatgattattttgctatggttg
ggtctcatgttctgtatatgcatgttaggtctttggtctatagtgttgtatagtttgcaatttacttgttggtattctgtccggatgaccagtacattat
agacagtgacgtatcaaagtctccttctgtattgtattgatatctatttcttcctccaattctatcaatatttgctgttggcattctgtctggatgacct
gtacattatagagagtgatgtatcaaagtctccttctatattgtatcgatatctatttcttccttcaaatctgtcaatgttcactgtatattttaaggtg
ctttg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KIAA1712:NM:001040157:1/12
0 chr4 176518831 176518832 1001924 0 + 1104685738571 NA NA SINE Alu AluY cctaacctatagaataaaggttttcaatgatttctatgtataaactttccctggagtaactgatatcatgtagtcctatttctattcacagagtctgatt
tagtcattatggaatagaacccagaaatatgcatttaaatatttgttatgcttctgatgcagttgtttcctggttcagcatgagggaaaaaaagggaggc
tgaaaaaggtattgcatagttatatgtgtaatcccttatattaaaaaaaagaaaactaagaatcaacagaaaaaaagtgacaaaaaaaaaaaagagcctg
gagaagcaagcagggatcaaattctgctggatcttgtcggctacaataagaatttgggactttttctttacaatcataggaaggcaAAAAGGCTTTAGGC
CCCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGC
TGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTTTAGGCataattgatatgactagttatatgttgtagaacaataacaaaaaaac
tggttgtagagtagagatttgttttcaggaagaagactgaacaagaagggtctggttaatagtagcagttgtagtattaagaaactatggtaattagaaa
taggatggtgatgatagagataggaagaatatggaattgaagggaatgtagaaaggaaattagtgagtacctggtgatgtatacgatgtggaaggtggta
aaagttagagaaatgtcagggtcagtttagccaaccgtttccagcctgtctgtttatggaagatggagtccatcacagccaatgagaaacactggagtag
agcctggctttcgggatgatgggtggaagtgggaggatc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr4 167558244 167558245 1001925 0 - 1104685736046 NA NA SINE Alu AluYa5 gatataatagattttataaaaagtttcatccaacagctgcagaatacactcttctcctcagtacataaattattctcaaggataaatgacatgttaggca
acaaaacaagtcctgaaatactcaaaaagtttgaaataatatcagtcatattctcgatcataagggaatacaattaaaaatgagtaaaaataggaatttt
gggaattatacaaatacatggaagttaaataatatgctcctgaagaaacactggatcaaagaagaaattaagaaaaaaatttaaaaattacttgaatcaa
atgataatagaaacacaacatacaaaaacctataggatacagtgaaagcagtactaagaggagagtttacagctataaactcctgcattGAAAAAGTAGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGGAAAAAGTAGAaaatgtcaggtaaacaacctaataataccttttaaagaactgaaaaagcaacagcaagccaaacctcaa
attagtagaagaaagacataataaagatcagagcagaaataaatgaaatggagatgaagaaaacaatataaagttcactgaaacataaagttgtcttaaa
ataaacaatttaaaaaatcaacaaatctttggccagactaatgaagaaaaaaagagagaagaccccaaaacttacatcagggatgaaaaaggagttatta
caaccaatacaacagaaattcaaaggatccctagaggctactatgagcaactatgtatcaataaactggaaagcctagaatacatggacacattcttaga
cacatacaacttagcaagtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 123914726 123914727 1001926 0 + 1104685719650 NA NA SINE Alu AluY atttatccagagctgacaaagtccacagtctgaagcctgctttattatttctccctagtttaggtaaggtaataatccccagatagtcacagtaccttct
gtctacctttcttcttgtcacattttctccttaaagatgttttagtataataatgaattgctatccacagtaaaggtgcttcatcataattttgcttcat
gctgaatttgtaaactggccacagtcattgacgggcagtctgtaacagcaataaaacagagttgctacggaactgactcaaggtcaaaccctcagtgttg
ggaagtacaaaaacactgcctctcagagaatgctgtttcttattgtttcatgtttaacacgataaaaggaaaggacaccaggcatCAAAAAGTCTCTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAACAAAAAAA
AAAAAAAAAAAAAAAACAAAAAGTCTCTCTTaaccaagagttttttttttaaataaacatcttaatcaaacaaattgggaaacaattttcctgtggcttt
agacagagccccaaaaatggagggcagagggtacctcaagaaactaaaggaatggattccagcatggtcagctcgtgacagtcattcctgttagactagc
acctgcagatgagagttttattggaaacttctcttcagcccaatgtcccacacaaacaagagggttttgtttgtttgatttgtttaggctgctatgttat
gttccatgaacaaaatgatcttttagaaatatcatggaggccaatctttttttttttttttttgagacagtctctctctgtcgcccaggctggagtgcag
tggcgtgatgttggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 133790824 133790825 1001927 0 - 1104685717269 NA NA SINE Alu AluYa5 tttagatacttctgtaagagctgaagatcccaaagtttgaaaacttttagcgttttccaactttcctctgaaaggctggaaaccctgctccaagagcact
ctctacttaggtGTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACA
TGTTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCT
TGAACCCGGCAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAAGT
AGTGGCTCACGCCTGTATTCCTAGCACTTTGGGAGGCCAAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGTTGAAACCC
CATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGCA
GGCGGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTTCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAACCTAAGTgcctctggcct
ccatttagtattttctcggcacctgcattttcagtttttcctcggcaggaagggcaagaataaaactgcttctccagttcatttggctgtattagaacag
t Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 130881158 130881159 1001928 0 + 1104685717984 NA NA SINE Alu AluYb8 tgctcactatctgggtgatgggatcattcgaaccccaaacactcagcaccacgcaatatactatgtaagaaatctgcacatgtacccccctgcatctaaa
ataaaagttgaaattatttttaaaaattggggagacatccatttttctggataagaagactccacgttagaaaaaaatgcccaaattaatctatatatag
tcttctgccccacaaaaaaagctggatttcacttgaaacgtttctaaatttctagaagaataaaagcagaaacactaaaaaaaaattgctgttaggatat
cttcccctcaactgtccaaattaaaaatacttctatcatttcacaaggcttttcttatggtgttaaaggctaggtgttcacttCATTTGAGAGATTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAACATTTGAGAGATTTTTTtaaaattcaaataactagacaaatcacttcagctatcccaggctaagatacatacattggcaatgtac
acctgtaactaaggggtatattcatagctccaaaagggaatctaaaggcagcctaaggtgaaaggaaagatcaagggtccagtactgatatttaattctt
ctccttgtttattcccgaggatctgattggaaacattcgcgcatgtacacacacacacacacacacacacaaaatttagttagacatttctcttacccat
ggattaaaattatagaaatcttgtactttggagggtatatcttatcaatctattataattctgtgtttattccttttactctcctttaaatattttccaa
tttttttttcaactt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RAPGEF6:NM:016340:7/28
0 chr5 91066782 91066783 1001929 0 - 1104685647738 NA NA SINE Alu AluYa5 ttaagccttcacctctgcctccaattggttctttgcactatcatacctctttctgagtagtgctttctccatgacagcctgaagaccaatcagcacactc
ctccctcttcccagtccatgaaaaccttggactcagcctcatagctagcaaacctctttagggtcccctgtctttgctgagagcttttctgtcacttaat
aaatctgactctgccttactctctggtgtccatgcacatttttcttcttggttgtgggacaagaacctggagcttaccactggtgggagtgaaagagctg
taacactccctcccagtcaccaaacaacacgattgagaaagctgcaacacaattggactaggcaaaaagacaaggtgttgatttactattAAAAGTTCCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGTTCCCggtagataagaactctggaactcagtgtcttcaagatattcatcacttattatgtggtggcaaatatgggcaacagtggctttat
tgaacttactagtactctaagtagcttaggcaaaagttctagagttctgactgttatagtttgtgtcacatacccatgttatagtttgtgtcacataccc
agtcctgacttaatcaaagtggtgcccagggtaacataatgtatccactagacaggtctgagaatttcaccagtctgcgggcaggggctggggtcagccc
cacctcaaccatatgaaatcaatttgatccaccaaaagaaacattgacaccaacaagatgaacataagagagaaataatttttaaaaacacatggaaatt
gatat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 114767636 114767637 1001930 0 - 1104685721654 NA NA SINE Alu AluY cctctcacattgccttactcctcttaccaggccatagtagataacatggatcctcaaatctcactaatgaatctaaaataatggctttaacatagctgct
cagattacacacactatcagagtattttccctttaagataggatatcagtgaacactacaagtatcaacttttttgttataaaaatttcttcagcaatcc
caattactttcctagtcctttttaatctgtcatataaagcctttttattgttacacctattcactaattatgactgctattttgctcaaagaaatattcc
cccaggcatacatctatttctatttcctaatgacaaagtatgcttattttatgtagtgtcacaatattattttattgatgctgcttTAGAATGTTTTTTT
AGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTA
AAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGC
CTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAATAGAATGTTTTTTTattgtcattcatcaaggc
atattgcacacctagatcaaaaagagaaccagcaagcacacacatttcttaacctaagtaacatctgaaaacgtaagacttagacttcagttacattttc
cactgaagaaaatccatacaactttggtgcctatccaagaacttataatgtcaatttctaacatacgttataacccccagtacacgtgtattttcagaag
aaagcaagtcatagcaaatcaaatttttcccaaatgctatttggtatatttttatagcaaattaaaaatttttgaatatgaaaactgaaggtggccaggc
acagcagctcatgcttgtaatcccagcactttgggaggctgacctgggaggatcacttgaacccaaga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 100525162 100525297 1001931 0 - 1104685724588 NA NA SINE Alu AluY tataaaaaagctcaatatcactgaccattagaaaaatgcaaatcaaaattacaagataccaactaacaccagtcagcatggctattattataaagtaaaa
aaaaaaaaaaatactgatgctggtgaggttacagggaaaaaggaacacttcaacactgttggtggaaatgtaaattagctcaaccattgtggaaaacagt
gtggcaattcctcaaagacctaaaaaccaaactaccatttgacccagcaatcacgttactgggtatacctacaaagaaataataaaatattctattataa
aaacacatgaaaacatatgttcattgcagcacttttcacaatagcaaagacatggactctacttcaatgctcttcagtggttgactagataaagaNNNNN
CGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCAACTGCACTCCAGCCTGGGCCACAGAGCAAGACTCCGTCTCGGGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAANNNNNaaatgcggtatatatacactatggaatatatgcatccataaaacagaatgagatcatgtccttttcaggaacatggatgt
agctggaggccatcatccttaacaaactaacacagaaacagccagtcaaataccacatgttctcacttataagtggaagctaaacaatgaaaacacagag
acacaaggagaggaacaacagataccagggcctgcttgagggtggagtttgagaggaaggatagggccagaaaaaataactattgcctattagggttagt
acctgggtgataaaataatctatacgacaatcccccatgatatgcatttacctatgtaacaaacctgcacatgtaccccttaacataaaataaaagttaa
aaaagaaatacaaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 109273863 109273864 1001932 0 - 1104685722788 NA NA SINE Alu AluY acagcaggcattttctgattccataaggaagacctgatgtccttatgcatcaaaagttaaacatgacaaagagattttcaaagaaatttagatggtatgg
tgaattaataagattttttaaagtcactatgaagcatctactatatgctagtcttatttcagatgctgaggatacaacagtaaacttcgttttcagggaa
cttacctttacttggaaagactgagaaaacaaaaaacaaaagcaagttaaaaacaaaaaataaatgatgtaactttagacactaatagatgctctaaagg
aaaattaatcaagttgagagattgtggcgacacagcagggactcaaggaccattttaggtcagatggtcagggaaggactctggaATTTTGAAGGATTTT
TTGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAATTTTGAAGGATTTTctggaagagaaacttcaggcagaggaaacaggaattgcaaagagcctgagaagaaaataagcctggcatgtttaagg
aacccaagaaagctcagatgaccagaacagaatgtgtaatggggacaaaaatagaaaataaaattaaatctgatgtgagatttattggccagtgtaaaga
atttgagttggaggattttgaatgagaagtgaaagaatctctttgagattttaaaagatctttgaaggtgatgtgtggacactggattttgggcagtcta
gagtgaaagcaaaatccattacaagactttcaccctagtccaaatgagagatgatggtgacttaatagaatgatagaataggatattaatgacttaatag
aatgatca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 54765051 54765052 1001933 0 - 1104685094704 NA NA SINE Alu AluYb8 ccggcctgacctcttgatttctttctctgctaattcactattgttgtatagaaatgctagagatttgggggcatggtgcctcacgcctgtaatcccagca
ctttgggaggatgaggcaggagaatcatgaggtcaggagatcgagaccatcctggctaacacagtgaaaccgtctctgttggaaatggaaaaaattagcc
aggtgtggtggcacgcgcctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaagttgcagtgagccaagatcgt
gtcactgcactccagcctgggtgacacagtgagactcggtcaaaaaaaaaaaatgctagagatttttgtatgttgattttatatcctttAACTTTACTGA
GTGGCCGGGCGCGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAA
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCTCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAACAAAAAAACTTTACTGAtttatcagatctaagagttttttggtagagtctttaggtttttctacatataagatcatatt
gtctgcgaagacggacagtttgatttcctgttatacaacttggatgcctttatttcttttctttttttcttttcgagactgggtctccctgtcacccagg
ctggagtgcagtgacacgatctcagctcactgcaacctcattgtcctgtgcttaagcagtgatgctcccacctcagtttcccaaatagctgggaccacag
gcacatgccaccaatcctggataattttttgtatttttttttttttttgtagagatggggtgtcgccatgttgcccaggctgttgtgaactcctgacctc
aggcgatctgcccgccttgaccttccg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PPAP2A:NM:003711:4/6
0 chr5 55725253 55725254 1001934 0 + 1104685095043 NA NA SINE Alu AluYb8 attcagcatcccttcatgttaaaaaaaactctcactaaactaggtattgaagaaacatacctcaacataataagagccatctatgacaaatccagagcca
acattaaactgaatggacaaaagcctaaagcattcctcttgaaaactggcacaagacaaggatgccctctttcaccacttctattcaacatgttattgaa
gtcctagccagagcaattaggcaagagaaagaaataaagggtatccaaataggaagagaggaagtcaaattatctctctgtgtagatgacatgattctat
atttagaaaaccccagagtctcagctcaatagctccaccagctgataaacaactttagcaaattttgggatacaaaatcaatgtaAAAAATCACTAGCAT
TCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAA
AAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACCTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGA
GCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCACTAGCA
Ttcctatacatcagcaacaaccaaactgagagccaaatcagacaggcaatctcattcactattgccaaaaacaaaataaaatacctaggaatacagctaa
ccagccaggtgaaagatctctacaatgagaattaaaaagcactcctcaaagaaatcagagaagacacaaacaaatggaaaaacaccccatactcatgaat
aggaagtatcaatatcattaaaatagctatattggccaaaccaatttacagattcaatgctattcctatcaaactaccaatgaaattcttcacataacta
gaaaaaattgttttaaaatttatatagaaccaaaaaaatagcccaaatagccaaagcaatcctaaacaaaaagaacaaagctggcg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 40217415 40217416 1001935 0 - 1104685203503 NA NA SINE Alu AluYa5 ggtgagaacatgcagtgtttggttttctgtttctgtgttagttggctgaggatgatggtttccagcttcatccatgttcctgcaaaggacatgaactcat
tcttttttatggctgcatagcattccatggtgtgtaagtgacacattttctatatccagcctatcattgatgggcaatttgggttggttccaagtctttg
ctattgtgaacagtactgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatccacccagtaaagagattgctgg
gtcaaaaggtatttctggttctagatccttgaggaattgccacactgtcatccacaatcattgaactaatttacattttgaccagtggtgtAAAAGTGTT
GGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAGTGTTctatttctccacatcctctgcagcatctattgtttcccgactttttaataatcaccattctaactggagtgagatcctttctcattgtggt
tttgacttgcatttctctaatgaccagagatgatgagctttttttcatatgttcattggccacataaatgtcttcctttgaaaagtgtctgttcagatcc
ttcacccacttttatggggttgtttttttcttgtaaatttgtttaagttccttgtagattctggatattatccctttgtcagatggatagattgcaaaca
gtttctcccattctgtaggttgcctgttccctctgatgatagtttattttgctgtgcagaagctctttagtttaactagatcccatttgtcaattttggc
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 41018182 41018183 1001936 0 - 1104685203669 GAGTCAACCACCACAGATAGGA CCTGTGACCACAGCATAATGA SINE Alu AluYb8 caaaagaaaaaagaacaggggcaaacttccagtcctatgtttgacacatactaaaaccccaaagagaagactgaattgtatttgttctcagacaagacac
ccctgtgaccacagcataatgaattctgctctaacattttagtggttcaatctcccgacaagagtaagtattccagccaggcgtggtggttcatgtctgt
aatcccagcactttgggaggccaaggcagacggattacctgaggtcaggagttggagacgagcatggccaacatggtgaaaccccgtctctactaAAAAA
TGCAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTGCTTGGGAAGCTGAGGCACAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAG
TGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATGCAAAAATTAG
CTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTGCTTGGGAAGCTGAGGCACAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGgagatgagatca
ccccactgcgctccagcctgggcaacaaagtgagactctgtcttaaaaaaattaaaaaaagaataaggaattcctatctgtggtggttgactctatagga
tgaagtgtgagattactactcaggatagaaatagtttgtatctgtcatttttgttcaagtcctctttatatttggttccattgaggaaaaccaccctctc
taatcaggagatcacgttctttctgttatcctagtcattttgtagagtgtgttctggcccatgggctgtgtcaatcatactta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 592 405 NA exon:3UTR:C7:NM_000587
0 chr5 57751982 57751983 1001937 0 + 1104685095552 NA NA SINE Alu AluYb8 gatctaaccctagttaagttttcaggtgactacagcactgaccggcagtgtgactgcaacctcatgagttaccctcagccaaaatcatccagctcaacct
ctcctggattcctgacccaccatacactgagtggtataatcagtgtttgctgttttcagctgcttagttttagattaatgtgtttcatagcaataaataa
ctaatataagagacaagagtagaaacaggatgatcaggcataaagactattgcagtgatccagggaagagatggttataaatattaattaagataaatga
gaagattatagatttgctttaagaaaagcctggcctgatatatcagtatatgtgaaaggacctggaaaacctcaactctctccatgAAGATATTGGTGTG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAAGCAGAGCCTGCAGTGAGCCGAGATTACGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATATTGGTGTGatttgggggcagaaaaagtccactgaagcttcaccaaaacgtaagagtgacaa
cattgatcagaaattgattcttctgctctttgcgctgagtaggccattcttggagcaattagtccaattctgggtgatacacttacaatagagattaaga
aacaagacctcatgcagagaatgctctagaattgtagagtggcagctcaagctgggtgatgagaggggtcacatggaaaaaagtgggtggagtttttcga
tcaagtgttcaatgtatggggggttgggtgtcaaggatggctttgagctttcagactaacacaactggttggaaaggttagtcactgagaaatggaataa
taaaatcggtctgggaattaggcaagaagatca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 58291565 58291566 1001938 0 + 1104685095657 NA NA SINE Alu AluYa5 cttgctctgtcacccaggctggagtgcagtggcacaatcttggatcactgcagcctccacctcctgggttcaagtgattctcctgcctcagcctcctgag
tagctgggattacaggcatgtgccaccacacctgggtaatttttgtatttttattagagacagggtttctccatgttagccaggctggtcttgaactcct
gacctcaggtgatccacctgcctcagtctcccaaagtgctgggattacaggcatgagccaccatgcccagctgagctgtttgtatttaatattggcatac
gtcttcgatatgaacaagttcattgtatattatttagggaaataaagctgttccagtgaggggactacagtcagtgcaaaaattttAAAAAAAAATATGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAATATGGaaagtattttgtcctacatgttaggcactgaaattacggttactaaatgagagggaaatttgagatttaaaaaaaaagaaagtaaa
ggaaatcccctaaataatgccttgcaaactgatagctgacatagaataaaaaactgaagcaacaatcaagttaaatattctcttccccaagggacacagg
gcactttagagacaaactggctatgttcccatatcagccttgacatttttactggacaaccttatccttccagcctcttttgacctctctgttaaatgaa
gggaatattgggttgatgtagagttgaaatgagatagcaaaaggtgtgatgcagtcttagtgatcattcttcccctggattccttcctcttccattcccc
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 43429563 43429564 1001939 0 - 1104685204236 NA NA SINE Alu AluY ttctgttatggaaagaacaatcctgccaatgaaagattcctctgtaccaatacagaagagaaaaaaaagtattactgagtaagcattaacacatttacaa
gcatgtacggcagcacaaaagtgactatgaaattggaacagaattttatatagcatagcagaagaaagaataacttctcacctcctcaaaagataaaagg
gtcacaccttgtgacagtttctacacgtcttgtgagagaccctgagctaaatccagaggtgtttttaaaaatacatctggaggttatttggcccttggcc
ttggatatatatagctattattacaaaaactgaagagtgggcttaatccttgtagagatttatctcaatccaaaagtaaagattAAGATACACTATGTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGATACACTATGTCTtaaagaacctcatcttaagaatggaggaaaggaggccgggcgcggtggctcacgcctgtaatccca
gcactttgggaggctgaggtgggtggatcatttgaggtcagaagttcaagaccaacctggccaacatggtgaaacctcacctctactaaaaatacaaaaa
ttagctgggcatggtggctggcacctgtggtcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccga
gattgtgccactgccctccagcctgggcaacagagtgatactctgcctcagaaaaaaagaaaagaaaaaaaaaaacggaagaaagggatgggtgtggtgg
tagctcatgcctgtaatc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CCL28:NM:148672:1/3
0 chr5 43553681 43553682 1001940 0 - 1104685204267 NA NA SINE Alu AluYb9 taggctgtagaatggatgctgcgttagcagacatgaaaacaacattaatctccttgtacgtcatcagagctcttaggtgaccaggtgcattgtcaataag
tagcaatattttaaaagaaatctatttttctgaatgtcattttcaacagtgggcttaaaatattcagtaaatcatactctaaacagatgtgctgtcatcc
aggctctgttgtttctggagtgcaggcagagtagatttaacataattcttaagggccctaggattttgaaatgagaaatgagcattggtttcaacttcaa
gtcaccagctgcattagaccttcacaagacaatcagcctgtcctttgaagctttgaaaccaggcattaatttctctctggctatGAAAGTCCTGGATGAC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACCGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAGGAAAGTCCTGGATGACtcttccactagaaggctgttgcatctacattaaaaatccgctgtttaatttggccaccttcatcaatg
gtcttcgttagatcttctggataacttgctgcagcttctacatcagcacttgtggcttcaccttgcccttttatgttacagagatggcttctttccttaa
atttcatgaaccaactactgatagctttaaacttttcttcaactccctcacctttctcagccttcatagaatcgaagagagttagggctttgttctggat
taggctttggtttaagggaatgttgtagctggtttgatcttctatccagaccattcaaacttcctccctgtcagtaataaggctgttttggtttttctta
ttattcatgtgttcac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 18578142 18578143 1001941 0 + 1104685175261 NA NA SINE Alu AluYa5 aaatgctgccaagtgtcaaagccatttgttctgtacaataaaggttggactaaacgctaaggtcagttctaaccttccaaaagtctgctagaggcatgtg
tttccttgttatgattttttaagaaaggatttaagagtgttaaggtcatttccatttgaattagtattcgaggcaggtcttaagttgggtgccaaagatt
acttaacaactagagcttgtgtttccataaaaccgaaagctcactctcctgtactggtgttgaaacctttttattgaaggctggatgcttctaaaatggt
acctgcatacaaaggtttacaactgatgtacaattcaaatttcattttctaatcattcagttttgaggaaatcaataagatcattAAAAATACTTTTGGG
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATACTTTTGGGttatggtttcttaattttcttaatcatctcctagaatgtcaacattatttcattttgaaagtgtgcttatt
gtttgctaaccttgaatttgcattcccaaagaaatattgaatgaaccattttatatagcagtgattttaatcagtgccctaaccagcaaactcattgcaa
tttaagttatgaatctgatgatttggaggagaataataattaggtttttctgtaattcaattattttcatttgttagataataaatctagttttctttag
accctaaagataatgcccaacactatgagaaaaaggaaacgaatctgcttaaatgcgttaatagcaattataatgttttatttgtatatttttacgtaaa
ctaaagaacttttg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 19007346 19007347 1001942 0 - 1104685175441 NA NA SINE Alu AluYa5 cttcaacagaaatgttgcaaatgtcttcttgcaaccaagcatccaattctaatttaaataattcatagctgcatactattaaaagaatgacagtggctgg
gtgcagtggctcacacctgcaatcttagccgaggcaggcaaatcatttgaggtcaggggtttgagaacagcctggccaacgTGGTGAAACCCTGTCTCTA
CTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAG
GTTGCAGTGAGCTGAGATCGAGCCGTCCAGCCTAGGTGACAGAGTTAGACCCTGTCTCAAAAAAATAAAAAATAAATAAAAAATAAAAATAAAAGAATGA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATTG
GTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACACACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTT
GAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGAGCCGTCCAGCCTAGGTGACAGAGTTAGACCCTGTCTCAAAAAAATAAAAAATAAATAAAAAA
TAAAAATAAAAGAATGAgttagaggaagagttgggattgaaagtagcaaacatgaagttcttttgttttcttgcccttttcagccaatgaaaccactcca
ttctcccatttctaggtttcatctttcaaacaggaaataacctgtagtactgtttaataactcatagcaatagtaataatggtaacagtaatgttgaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 2719017 2719018 1001943 0 + 1104685483937 NA NA SINE Alu AluYa5 aatatgtgaaatccagtatttcacctcctagatgaggggatgcggagttgagttttgaaggataagcagaatttaactgagtgaaatagaaagctcattg
tctatgccatagttgctttggtttgtatggctaagcagtagtgttcaggtattttgctctcccaaaaatatttggatcacatgatacaaacagtgaagat
tctgtctgctctgggttaattttggaggccaggaaaaaaatgtccatgattcatgatacgaagaatgagcttgtgctgctgaaaatgaaaaagtaagcta
gcatttcgtcatcctgcactacttgctgctttgaaggaatatagattcctaggtcatagaatatatacatagtcaaaaacactcctATAATTGATTCTTT
AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATAC
AAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGT
GAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAATAATTGATTCTTTtgtga
accagatagagtatacaagtctttggagatcaagagagtgaaatgagaagccataactgccctctgcctagctaggctgagttccgagaggtggttggaa
gacagaaagtggcgtctgtccctgggtaagggctgtggcgtaactgggtgtggggcttttctctaatcatctggagaggagagcccctgacaagctggcc
cccaaacaaggtggctatggattcttctttttataaaagtttaaagtgtcttaaataaccttttgtgccattgaatagaaagaaaggtagtggaactcca
gaatacaagggattggccagaataaatggttggtatagagtagatgtcaatctttttatttaaaaattttttaagtacatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:WRNIP1:NM:130395:3/7
0 chr5 179301791 179301792 1001944 0 + 1104685059716 NA NA SINE Alu AluY accacaacaagctagtctgacattaccagaaagagaaacctgataaacttattaccagtggcttagagtttccttaatgaggcttaatagaatactgaaa
ctgattaacggaatttaaaaaatgaaatagagaagtacattctgcaagtctctgtaaaacataagaatctcattatgtctgttatcctatttgctgtttt
atgtctttctttctcaataagaccataaactccccatgggcacaactctgatacagtttatttcagtttcttcacatcatgccaataaatattccattaa
attgagttgagtgggatgtacactattctaattagagtcactaatttgtgtccaaataggtttcacttagaaccatctcagtaGAAATAAAGAGGGCACT
TACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACCGCACTCCAACCTGGGAGACACAGCG
AGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGAAATAAAGAGGGCACTggcaccaagaaacaatgaagaagctgaaaattaaccagcagttgt
tatttctgtaccatcagttatggtagttagacggctttaatgaagattacaaaggttttaaataactgaaacactcatcagttgaggactgattcaatat
acaatgcatttatcaatattaaagagactgaggcagacagatctgtatgcactgatgtggaaaaatctccaaattttggaaaaaaagaatatatggtccg
tatgctctttttggaaaatctatagtattatatgttcttagtctcgaatttaagtaactgtttttggattaagttctagaaaatagtaagtggaagccca
gctgagccttgaaactgcaaccttgagtaagaaagaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 13567575 13567576 1001945 0 + 1104685173693 NA NA SINE Alu AluY ttttgtcctatcttgctgtggtttgaatgtttgtgtgccctccaaaatatatgaattggaaacttaatccccaatgcaaaagtgttgggaggtgaggtct
aatggtaggtgccagggccataagggctctgctctgatgagtgggttaatgctgctatcaaaagagcttgcagtggtactggcatcaaaatagacacata
gaccaatggaacagaatagagatctcagaaataagaccacacatttccaaccatctaatcttcgacaaacctgacaaaaacaagcaatggggaaaggatt
ccctattttataaatggtgctgggaaaactggctagccatatgcagaaaactgaaactggaccccttccttacaccttataAAAAATTAACTCAAGATGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAATTAACTCAAGATGGattaaagacttaaatataaaatccaaaaccataaaaaccctagaagaaaatctaagcaataccattaaggatataggcat
gggcaaagattttatgatgaaactgccaaaagcaattgcaacaaaagcaaaaattgacaaatgggatctaattaaactaaagagcttctacacagcaaaa
gaaactatcatcagagcaaacagacaacctacagaatgggaaaaaatttttgcaatctacccatctgacaaaggtttaatatccagaacctacaaggaac
ttaaatttataagaaaaaaacaaccccatcaaaaagtaggcaaaggacataaacagacacttctcaaaagaggacatttatgcagccaacaaacatatga
a Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:GFOD1:NM:018988:1/2
0 chr6 5979774 5979775 1001946 0 + 1104685171360 NA NA SINE Alu AluYa5 tgagactctagttcactctcctctccattaatcaaaaatagaaatgctttcctgcttgcctgaaagtattgacattatactattgccccagtactgagca
tttgctcaaaggccattacaaaataactggaaaatggatgcgtattttggttggtttaggggaacaaattactcaagcaacatgtagttattgcgctttt
ttttttatctcccacactgcccaacattgtgagagatataaaagaatgatattctttcctttcaatgctataaaagattgatgttttcctttttttactc
tttgttgacactccagaaaaaaaaacagttaacacgagataggataaagtgtggtttttaacaggtgatataggttgtttaattAGAAAAGAGAAAGCAC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAAGAGAAAGCACactgtaggcccatagaagtggaaagatttttcttctccagaagaaaaatcctctcctctctcttgccacccgctga
gtgagatgctcattctttgagcctcagagatgtcctgggtacatccactcctttacttgccacattttattatactacaagctgggtggctggacatcct
ggtttgcccagcacagtcccagtttatgcctgttatcccagaataatcattaatagtttccccttttactctcaagagtaactcagtttagatgttaaat
ataattataacataaacataaactgaagaccatatagcccaggcttcttatgctgttgcattcaaaagagcacaatatagtaaccaaaagtaattagaaa
tgtttctt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 152103758 152103759 1001947 0 + 1104685234571 NA NA SINE Alu AluYa5 cagaccacagtgcaatcaaactagaactcaggattaagaatctcactcaaaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactg
ggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgtgacgcattcaaagcagtg
tgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatccaaaattgacaccctaacatcacaattaaaagaactagaaaagcaag
agcaaacacattcaaaagctagcagaaggcaagaaataactaaaatcagagaagaactgaaggaaatagagacacaaaaaacgcttcTCATTAATTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAATCATTAATTTTTTtccagaagctggttttttgaaaggatcaataaaattgatagaccgctagcaagactaataaagaaaaagagagagatgaatc
aaatagatgcaataaaaaatgataaaggggatatcaccaccgatcccacagcaatacaaactaccatcagagaatactacaaacacctctatgcaaataa
actagaaaatcaagaagaaatggataaattcctcaacacatacactctcccaagactaaaccagaaagaagttgaatctctgaatagaccaataacagga
tctgaaattgtggcaataatcaatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccagaggtacaaggaggaactgg
tacca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 158649752 158649753 1001948 0 - 1104685443890 NA NA SINE Alu AluYa5 tcactgtgggcataggtgggtgagaaatatttgtcatatgctgactttgatatattgagttctctattcttcaaatcacatcacttacccagtggtaaag
ctggaagggctaagtttgtggtgcacacagtcttgcagctgcatgctcccatagggcaggggtcatatctgtcttctttaccatggaagatgtggcacct
cacacgtggcctggtatagcacaggggctcaataggtagctggaagatgatgctacaagggagtgaagaaatgcataccttctcctggtcacattgaaca
tctctcatctcctaatgagtcttgtcctttctacttttgcccttcgataacccattctcacacaagaaccggaatgatccttttGAACCTGATTTATTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATAA
ATAAAAATAAAAAATGAACCTGATTTATTTTtaaaattagcttacagtgatggttgtacagctctctaaatacactaaaaaccattgaactgcacacttc
aaatgggtaaatttgtgataggtaaattctatctcaataaggctgttaaaaaaaattagattgtcattctatgcttaacacccttcactggttcctgaca
tttcacgtagaattcgccagactgcttatggtgatgtacaacatcctacctttcccacgggctctgcctgcctctccaacctcacctcacaccaggccac
agcttacctcccactcttacctgaatctgcctagcttggtcctgccttccacaatattcttctccatacttttgtactttttttcatttcttccttttat
ttgccccttaagatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr5 141738840 141738841 1001949 0 - 1104685236897 NA NA SINE Alu AluYb9 tggtatatgagtactactatctattaggggggtggtttttgagttacactttttttcttttctcaattatttcatccattgagaggctcagcactgggaa
ttgcagacagatacacaaacctggttgagaaatccattttccactttccacacgtgtattgttgaggacattacctagtctcctggagcctcggcttcct
tatggagataatgggagatttaaaaaaaaagtaccccctaaacttgctgcaagaataaaactgagaaaacacatggaaactttgggtgctttttgacctg
acacagtaagtagaagctgttatgtcatttttctatattcactgtgataggttacacttcacaaagcaaggtttaaacactggggttAATCCCCATTTTT
TGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AATCCCCATTTTTaaaattttgataaccctcattgtcctcatcagaccctctcctaagcccctgcttagttttactttgaaagagatattgcacaacctg
cattaaagtgacaaggctccaccccgttaaccaaaataatgaatgggaacaagattaggagattgtaaagtgcctgcaaatggaaggcagcctgagtccg
gtttttactggatgaccctgaagggacagtggtttaaacaacagcccaagtaaagtaccaggggtatttacatgaggtgcaataatgcattaaatgaaca
cattaaatgcaggggggcatgggagtgaagatggaatgtggaggggctgtatgtcaagaaaatcaacattactcttccaacatctgggccaaagcttcca
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 96615902 96615903 1001950 0 - 1104685083928 NA NA SINE Alu AluYg6 gatgggcagctacatgagtctaagaggaaaaagatcttagaatcatagtggagatcagtttaacaaaataaaatcagaaaaaaatataaaaagcattaaa
aattccatgagactttgcataagtctactgtaaggtattaagaaggagtttaccaaccccatgggaaacaagaaaataaaaaaggaagcagtttgatgca
tttttgggaaaggcaaatatgaaatgaaaactgatacaaagaatgaaagtgtttgtaaaactatacccatgagaaactaggaatactaaaaacaaataaa
gaagagaagacttaatgacttctaagataataatatatgttatgattattagaatttacacaactccagagagaacagagccCCTCTCAAGATACTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAACCTCTCAAGATACTTCTTtttaaagaataatgggtgataaaatcattcttaaggggagatgtagttaaatactagaatgataatatcatagac
tctgcttcaatgacaccattataaagtcgattaaaattcatgtgccataataggaagatcctaaaatgagacagaaataaactataagttctctcctatt
cttataacttcataataatatcccatggaattactagtaaacttcaattttaatgctcattaaatataggatacattttaatgtgtaataacaggcttat
gtatttggccatttataatatttgctttgtcaaaactaactaaaatggcaacagatttactctcttaaactcactgtttcaatgttataaaaagtctttt
ttattaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:FUT9:NM:006581:1/3
0 chr6 98358062 98358063 1001951 0 - 1104685083532 NA NA SINE Alu AluYa5 aatgcaaattatcataataaaggttctcaaaaggcctgcaatgcagaaggtatttaagttttgcttaattgaatttttctccaacctaactgactgaaga
cccaagtttacatagtaaatctattaatatcacagggcttactttgggaaataattactactgtttcttataacagattatgttcataaagctatgaaaa
tgtagaaaagtttataatgcttgcgagagtgatgggtgataatatattaaagcagtatttctcaaagtgtgatctaggaagtcctaggcatccctaagat
actttcagaggatccatgagttcaaagatcttttaataatactaaaatgtcattttccctttcaccttcattgtctcacagatgtacaTAGACCATTTCT
ACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTC
TACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCG
GAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGA
CCATTTCTgagcccgtaaaacatgtaataatgtcatcactctgactgataacgaaaagagtacttggatattttgtatttttaaaacctttagttttgat
ttctaatacaaataggtattgctagatataacctacattaacaaaagctttttggagtgctcaatacattttaagggttaaagggggtcctaaaacccaa
aagtttgagaacactatttgaaagtaaacacaggtttgggtgctattttaaaatggtggggagcctaccacggagtctgaaagtttgctttcaaaggtta
cctcttgggattttaatagcctttggatcaatgaaagaatcgtttctatgtatggtaaacttcagcatttccaatatgacaataaattatattttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 100514221 100514222 1001952 0 + 1104685082944 NA NA SINE Alu AluY gatagataccaatggaaaaagaaattatgcgtttcaggaaaaaagaaattggtaaatctctctaagtaggaacctagacacacatgtccagaggagacat
gtccacagaaaatgtttgagatgtcccctgaatctgtagctatgctgcttggtgaagatgtttccctgtctggagccagtctacaaagactgggagaggt
agctatattgttaaaatgtgtagataccaatgcaaagttacaaggaaaacaaagaagcggagaaaaattgcccaatcaaatgagccaagtaaattttcag
aaattgatactaaagaaacagttagatactaattacctgacaaataattcaaaataaccaccataaaggtgattgataaactcattaaaaTCCTGTATTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCTGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AACCTCCTGTATTGcaaaatgagagtttcagcaaagggatagaaaatataaaaaagaaccaaacagattttggagctgagaaatgcaacaattgaaatga
aaaattcactataaagtttcaacagcagacttgatcaagcaagagagagaatcagaaaatttgaagacaactcatttgaaatataaactaggcagaggag
taaaaagaaacaataataataatgataataataataataataataggtaaaaaaagccttaaagactattggacaccactgaaaggatccatatacatgt
tatgggcatctcagaaaaagaagagaaagaaagggacagaaagcttatttaaagaaataatggctgaaatcttcctaaatctgggaagggaaatgaacat
ccag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MCHR2:NM:001040179:1/6
0 chr6 104457273 104457274 1001953 0 - 1104685081983 NA NA SINE Alu AluYa5 cagagaacctaactaacttgtgtccagattcctgatatacagaaactgtgagatcataaatatgcatttttataagccactaaacttgtggtaattttat
gttgaatagaaaactaaaataatgtgttaggtaattttcaggttttttttgttttaattgtttttccccctccaccaagttagttaccaggatcctcgtt
aaacctctgctttagagacctaggataagtcaattatagtgttgaaacagaaatgataaaaaattcttagatgaaatattttctttaatctcttaaaagg
gagtggaacttacatccagactgtatcttcttcctgaagaccttctttgtcgtcactctcctttggtagaggagaataaagacttCTCCTTCCCATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAACTCCTTCCCATTTTTtgaacaaaatttcctacagaagcatttagccccaggtctcctttgactttttcatgcctttgagaatgatctcgacttg
acctttgactctatgttactacttcactgactttctacaagatctccaggacaggcacgactgaacaaatgcccatgtaggaaagtataagaatatgtat
ctttctatttcacttggatttctcataatttttttaaatctcagtatcatctcaactgaccacaaccaacaaaaatatttactttggtcaagaaagacag
aagatttcagcaatagttctaaattatacatggagaacaagaagaaataattctagcctataaaactaggctgaactcttggcatttccatgaatctgtg
gaagaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 71786037 71786038 1001954 0 + 1104685405138 NA NA SINE Alu AluYb8 agccagagcaattggacaagagaaagaagttagaaggaagtaaaagtatccctatttgcagacaacatgatcttatacagagaaaaccctaaaagacttc
atcaaaaagctgttagaattaataaatgaattcagtaaagttgcaagatatagaatcaacatacaaaaatcagtagcatttctatgtgccagttttgaac
tacctaaaaaagaaatcaagataatgatctcatttacagcagctacaaaataggtacctaggaataaacttaaccagggaagtgaaagagttctatgttg
aaaactataaaacaccgatgaaagaaactgaagagaaaacaaataaatggaaagatatcccacgtacatggactggaagaattaatattgtAAAATGGTC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAATGGTCatattactgaaagtgatctacagattaatgcaatcactatcaaaataccaatgaaattcttcacagaaata
gaaaaagtgatcctaaaatttatatagaatcacaaaagaccccaaatagcctaagctgtcctgagcaaaaagaacaaagctggaggcatcacagtaacct
gacttcaaaatataccacagagctatagtaaccaaaccaacatactggcataaaatcagacatatagaccaatgaaacagaatacagagcccagaaacaa
atttatgcacctacagccagcttgatctttgacaaagatgccagaagcacacactgaggaaaggacagtctctgcaataaatggtgctgggaaaattgga
tactcacatgcagaagaatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 72637216 72637217 1001955 0 + 1104685405373 NA NA SINE Alu AluY gcctgggactgagtgagatctatgcaatagtatagtcagagaccaggtgacaaaatgtgtgccacccaccagatggggagagagaagagagaaatcacta
aataaaccaaggaggggtcactcagggagactaaagtgctcccaaactatctaacatcatggaagccaaggaaggagaatgtcaccaacagggtcatgtg
ataggcccagtccaatcagaaaaatttgtcatttaatatcctgctagagaaaaaaagggttaaccagggttggacataggtgcagtcaacattgtagaag
aaaaaaaaaaaaagagtgctatggtttgaatgtggtttcttctccaaaattcatgttgaaacctaatcacaaaggtgatggtatAGAAGATGGTTGAGTC
CGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAA
AAAAGAAGATGGTTGAGTCatgagggaacctccctcatgaattgattaaggccttataaaaagggcttgcaggaatgggttcactctcttccattcttct
gctatgtgagaacagagttcaccccatctttctcttccaccttctcccatgtgaggatgcagcaagaaggcccttaccagacaccttgaccattcacttc
ccagcctccagaactgtgagaaataaatttataatgtttataaattacccagtctgtggtattttgttatagcagctcaaacagactaagacagggagca
aagtagcctatgaatgaaggcttaatctaagcgggagatcctggagcccaggttggttagctgtcattctattcacacaggcaggagtagatgggcttcc
tgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 78899903 78899904 1001956 0 - 1104685407009 NA NA SINE Alu AluYg6 atattcctgggacattgcccttgtgcataatgttgtttaagacttctccccgcttgttcccagagctctatgtctagcgtgccttcttctgggaatgcct
tcccatgggttatgggaaacaagaatttgcattaggtcccttaattgagcctgcaaaactgaggctctactagctttaagcagctgtttcaatactttta
tatgctgttgacgttgagctgataactattgtaccatgatgaaaccgtagcctgaacaattccctcgaacttggaaatcctgagtgggcaccaattgtgt
ccagaattggttccttccagtgggtttgtggtctcattgacttcaagaatgaagctgtggacctgtgcggtgagtgttacagctcttAAAGATGGCAGGG
TCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTGGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAG
CTTGCAGTGAGTCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAACGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGATGGCAGGGcccaa
agagtgggcagtagcaaggtttattgtgaagaacaaaaaaacaaagctttcactgcatggaaggggacccaagtgggttgccactgctagctggggtggc
cagcttttatttccttatttgtcccctcccatgttccatttctgtcctatcagaatccccttttttcagtcctccctgcagttggctacttttagtatcc
tgctgattggtgggttttacagagtgctgactggtgcattttacagagtgctgattggagcattttacagagccctgattggtgcattttacaatcctct
tgctagctacagagtgatgattggtgcattttacaatcctcttgtaagacagaaaagttctccaagtccccactggactcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 74398647 74398648 1001957 0 + 1104685405862 NA NA SINE Alu AluYb8 cacaggaaccatgttttatttttttcctcttattcatttttaagtcctcagctgacaaagaacctaggtcatagtaaagtttcaaaaaaaaatgtttaaa
gaatgaatgagtagatgctgcacatttcttgggtccaagatttaaagatgcagcttcacgtaacacatcattttacaacactgtcaactataacgtcatg
tgcttAAGAATGCAGTCTGGTTGTACAAGGTGACTCATGCCTGTAATCCCAGCATTTTGGGAGTCTTAGGCAGGAAGACTCCTTAAGCCCAGCAGTTTGA
GACCAGCTTGATCATCATAGCGAGACTCCGTCTCTACAAAAAATAATTAGCTAGGCATGGTGGTGTGCACCTGTAGTCCCAGCTACTCGAGAGGCTGAGG
GCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCACTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGT
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGCAGTCTGGTTGTACAAGGTGACTCATGCCTGTAATCCCAGCATTTTGGGAGTCTTAGGCAGG
AAGACTCCTTAAGCCCAGCAGTTTGAGACCAGCTTGATCATCATAGCGAGACTCCGTCTCTACAAAAAATAATTAGCTAGGCATGGTGGTGTGCACCTGT
AGTCCCAGCTACTCGAGAGGCTGAGGtgggaagactgcttgaacctgtagggttgaggctgcactgagctgtgatggtgccactgtactccagcctgggc
actgagctagactcaaaaaaaaaaaaaaaaaaaaaaggaatgcaatctgggcttctcctcctaactctcttgcctctgaatattcctttttccgaagtgt
gtcgagaaacaacctaagtttggagagatta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SLC17A5:NM:012434:6/11
0 chr6 74724739 74724740 1001958 0 - 1104685405939 NA NA SINE Alu AluYa5 catgaaaaaatgctcatcatcactgtccatcagagaaatgcaaatcaaaactacaatgagataccatctcacaccagttagaatggcaatcattaaaaag
tcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaacccttgtggaagtcagtgt
ggcgattcctcagggatctagaactagaaataccatttgatccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaaga
cacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaacgatagactggattAAGAAAATGTGG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCCAGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
GAAAATGTGGacatatacaccatggaatactatgcagccataaaaaatgaagagttcatgtcctttgtagggacatggatgaaactggaaaccatcagta
tcagcaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacat
cacactcgtgggactgttgtggggtggggggaggggggagggatagcattaggagatatacctaatgctaaatgacgagttgctgggtgcaccacaccaa
catggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataattaaaaaaaaattttcaatgcct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 32749425 32749426 1001959 0 + 1104685374809 NA NA SINE Alu AluYa5 gcccaagaccatgggaacacacctcctgtattggcgtgatctagatgtgagacctggagtcaaaggagatcattttggagctttaaaattgactgcagct
gggtgtggtggctcatgcctgtaatcccagcactttgaaagaccaaggtgggcggaccacgaggtcaggagatcgagaccatcccggctaaaacggtgaa
accccgtctctactaaaaAAAAAAGTTAGCCAGGCATGGTGGCAGGCACCTGCAGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCGTGAACCCA
GGAGGCAGAGCTTGCAGTGAGCAGAGATGGCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGATTCTGTCTCAAAAAATAAATAAATAAAAATAAAAA
AAAAAAAAGTTAGCCAGGCATGGTGGCAGGCACCTGCAGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCA
GTGAGCAGAGATGGCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGATTCTGTCTCAAAAAATAAATAAATAAAAATAAAAAaataaaataataaaat
aaaaaaatttgactgccctgctggatttcagacttgtgtgtgccttgtaacccctttgttctggccaatttctcctatttggaatggctgtatttaccca
atacctgtacctccattgtatctaaaaagtaactagcttgcttttgattttacaggctcataggtggaaggacttgccttgtctcagatgagactttgga
ct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 49669889 49669890 1001960 0 + 1104685505702 NA NA SINE Alu AluYb8 tgtaatcgcaagtactcggcaggctgagacaggagaatcgcttgaacccgggaggtagaggttgcagtgagccgagattgcaccattgcattccagcctg
ggcaacaagagcaaaattttgtctcaaaaacaaacaaacaacaaacaaacaaacaaacaaaacaaaaacaaagaaattaggaattgagaaaacagctaga
acaggaaaaggataagatgagcacatctcagaaagacataggaaccagcatgaatagacttgcactggcaaatctgggacaatttcaccgtcacaacaaa
tgtttttataatgtattgtaaataatttaataaaataaaaaaatcatgaatctatagggatataagttaataaatgaatgcattTCCTCCTTAATCTTTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGTCCTCCTTAATCTTTCtgggacattgacatagggatgtggaagatttcatattgctttcacacaaaataaaat
gaattataaagataaaaacaagaaactttaaagcagagaaacacgctctccatcaatgattgaagtgaataatcattaataatggaacaagttcaaaaag
aattccacctggtaggatgcaattcagtatataggctcacttttgtgatattgctcttaaagttgtataacctaaatctaatcatggggaaacatcagca
aaacccagagtggggaccttctatgaaataactgcctacattcttcaaaagtgtcaaggtcatgaaagtcagagaaacaccaaggaactgttccagactg
aaggactaaagaggcaagaaactaggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 56810682 56810683 1001961 0 + 1104685503785 NA NA SINE Alu AluYa5 ctaacttcctgctggggatcataaagggtcaccctcactgcctaaagaataggcactcaagattgctttcaatctggtacagcataaccctccatcattc
atccatatccatcttcctacaaattctaaccaatcctttccctgaaacctgcggtgcacttcagccaacgatcaaaatgattttggcaattatgtcaatg
aaatggaacagtcatgctagtttctcctcttggagttttcctccctggtacttttcaccttctcacagggtgaaatcccatttgaccccaaatacaaagc
ttttccccagcctaagcagaattatttgcttcttcttttgggagagatgaagcaagtcagaaaacaaaagcaaacaaaattgcattTCTGCTTGTCCTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATCTGCTTGTCCTTTaaaaaaaatgaataagaaggggtctcatttgatcacttactgaaacaatgacatacttcagcaaataat
tacctgaaattcctccttggacataggtagaatgtaatccctgaaatattaagagctaagaaatggacacagaagtctttcctgttttttattcaaagcc
attatagagagacttccatgaaacagaagcatctgtgtttagttaatatgaaataacaaacattcgaaactacaaatcatcttctcttcccaattagtcc
accaggtcacatgatttgggtgtgttcttgtgcacttttatactcagttgtggaactaaaacagaaatgaacatgacagcctagatattccatcttgtta
tcacctctatagcttca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DST:NM:183380:1/94
0 chr6 64894202 64894203 1001962 0 + 1104685200449 NA NA SINE Alu AluYb8 ggtacacgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttgcacaacaggtgctggagaggatgtggagaaataggaacacttttac
actgttggtgggactgtaaactagttgctggtgggattgtaaactagttgttggtgggactataaactagttcaaccattgtggaagacagtgtggtgat
tcctcaaggatctagaactagaaataccatttgacccagcgatcccattactgggtatatacccaaaggattataaaccatgctgctacaaaggcacatg
cacacgtatgtttattgcggcactattcacaatagcgaagacttggaaccaacccaaatgcccatcaatgatagaccggattTATGTGCCACATTTTCTT
GCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGAT
TGCGCCACTGCAGTCCGCAATCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATATGTGCCACATTTTCTTacacca
tggaatacaatgcactattctcttctacatcagttttcctctcaagtctcctcaagatttgtgcactttctgtgactctagcatattgcagttactccag
tatcaaatgttgtgttaaaattctggcctgtagaaatgatcactcagatatcttactaatttgttggcattttaaggttcttccaccaaaacatcacgtt
ctgcacatcgtttttaaattcttattttctctgccaggtccagctcctttcttactgaccagagctctatcagcttcttcacacttctcctccttaactg
cttatctttcaaagagcagttcaagtcccctcttcactgtcttcctgcaatcatttaggtccttgtcaatgtctgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:EYS:NM:001142800:31/43
0 chr6 68368033 68368034 1001963 0 - 1104685199364 NA NA SINE Alu AluYb8 attaaatataacaaaatgcattctcctagccaaaatcaattagtaatggtgaaaataataaatttgataggatcaaaattagagaaaatattattttggc
tattatttaactgaaatccacaaggatgctgatggttagagccagttaaggtacatttcatatgtcctaaagagggtgtccccccatgaatgaacgctct
tcagaatgtcaagtactgtctatgtctttaaattcaattttgtgttgtactagctaattctggaaaacaagaaaagaacattttccatagtacattccat
tctattttagtgccataaaatagaattctaagcattctattataaggcagcaacaacaattagagatcattttaaaacttcattTTTTTGCCAGTATTTT
ACGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTG
AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGA
ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAATTTTTGCCAGTATTTTtaaaaattcctaaaaaattatacagaaaatatcgaggccctgtacgaatagggcaacaaaattattaaagt
aaataaatgtacctgagttatagtgagaggtgtgcagtttttgtggttttgaaggcaatttcaaaatatcaattctgttaaataaatataggaatttact
gaaatgacaatgataattcaagagtggtttcttgaaattgttataagtgactcataagatcaaaaaaagaaatacacatcttagaattttaattggattt
ttaaaaaatatccacaaattattgaagactcaaaataaaattagtataatgaaatcaactagcattataatagtagtaaacaaatagaactgagaaaagt
tagtacatcaatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 66872846 66872847 1001964 0 - 1104685199925 NA NA SINE Alu AluYb8 gaatgtaaattagtccaaccattgcggaagacagtgtggagattccttaaggagctagaaccagaaataccatttgacccagcaatcccattactgggta
tatacccaaaggattataaatcattctactataaagacacatgcacacgtatgtttattgcagcactgttcacaatagcaaagacttggaacaaaaccaa
aggtaaagaaaatcttaaggctttcagacaacagtgatacatattggggaacaacaattcaattgacttggagaattgtacattcgtaaccctgaagcca
gaggacagtagaataatatttaaaattctgaaagaaatggactgccaactagcagttctatatccagcaaaaatatattttacacataagaaTTTATTTC
ATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAA
GCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAATTTATTTCgattttatctcatggagaataattgagaggattcatcaccaatagatctgttctgaaagaaatgctacaggaggttttttaggc
tgaaagacatttataacagaaaaacaaaaaaaaatgaaactttagaaattaatgaattctactgcatgtaaattataaaatacatttacaacgatttcta
aaagctctaggatactattgggttgtgttgtaagtgaatgtttatggaagaaactactaaactgctttctgaaacttgtgtaccattttacattttctcc
aggactctgtaagttccagttgctccggatcgtcgtccaacaatggttttgttagtttgttttagccaatcaaattggtatgtagtgcatgtacaacctg
tcagtctt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 69699504 69699505 1001965 0 + 1104685054419 NA NA SINE Alu AluY tttaaccaaatatagtatagacaaacataaatacatgtataagacttttaacagaagacaattataatgtgaaaaagagaagaatatttttccttaaata
ttttcctagattatacttttttaaggtgttaaggtagtctgaataaatacaggtaagtgtcacacaatgaaattttacaaaaattaagctttacttataa
aagtgttccctgtatttgtctttaagccagaaaaaagactgtaacatataaataatataaaatttgttaacagtaatttgagaacaaagaataaggcaaa
aacatacatttaaataataataaaagacaatatatttttatattaatcatggagaaaaaagcaaaggctatcacacttttatatttGAGAAGTAATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAGAAGTAATTCTTaaatgagtaaactggcctcttcaatcaatatgatcagtaaaagattgtaattaaaagcaatctttct
acagagtgataaagtgagtgtgacttttttaaaaagagtaacatttgataaagtagcatagtttggatataaatgatggtgctctaatagcctatcatgc
aatctttatttattattaaggaatataaaattaaatgatatcatataatatatatatttaatatagacatctaaattaaatgccaataagatggcttaag
atatcctagttacattttcttatgcttaagcatcatagtcatcaattaatttataaacatgtttagaaaagcagtctttcattaccgtgaggaaaatagc
ctaaatttggactatgtag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:BAI3:NM:001704:4/32
0 chr6 31089062 31089063 1001966 0 - 1104685373780 NA NA SINE Alu AluYa5 cttacatccattacctaatacaataaaataaaataaacaagtgagtgggaggtgagaagtgacatagcaagtgtggggaagtccttcaagaatgggggtg
aggggccgggcccggtggctcacacccgtaatcccagcactttgggaggccaaggtgggtagattgtctgagctcaggagttcgagtccagcctgggcaa
cacaatgaaaccccgtctctactaaaatacAAAAAATTAGCTGGGCGTGGCGGTGTGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATC
GCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCAGCACTGCACTCTAGCCTGGGCGACAGAGCCACACTCCATCTCCAAAAAAAAAAAAAA
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAAATTAGCTGGGCGTGGCGGTGTGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGG
AGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCAGCACTGCACTCTAGCCTGGGCGACAGAGCCACACTCCATCTCCAAAAAAAA
AAAAAAaaaaaagaatgggggtgaggaggagagtggagggagaggtggtggctgaggagtgatgcggggacgttaggatggacatcattcagtgtttggt
ccagggacctctgggatcacactgtctgaagaacccacgccatcccaccaagcttactgaatcaagatcttgcttggtggggtgtcagggcctggaaacc
caagtttttaatcgtctccttggatgatacttgtgc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 32881413 32881414 1001967 0 - 1104685374938 NA NA SINE Alu AluYa5 gaaaagtccatcagactaacagtggacctgtcagaagaatctctacaagccagaagagactgggggccaacatttattattcttaaagaaaataatttca
acccagaatttcatatctggccaaactaatcttcaaaagtgaaggagaaataagaaccttttcagagaaggaaatgctgagggaatttcattaccactag
acttgtcttacaagagctcctgaaggaagcactaaatatggaaaggaaagacttactagccactacaaaaacacactgaagtacacagaccagtgacact
ataaagcaaccacataaacaagtctgcaaaataaccagctaacatcatgatgacaggatgaaatccacacatatcaatactaatcttaaatgtaaatgGG
GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACGATCCCGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGTAAATGGGtagtgccccaattaaaaggcacagagtggtaatctggataaagaaccaaggcctattagtatgctgtcttcaaaagactcat
ctcacatgcagtgacacacataggatcaaaataaacagatggagaaaaatctaccaagcaaatggaaaacagaaaaaagcaggggttgcaatactagttt
cagacaaaacagactttaaaccaacaaagatcaaaaaagatgaagaagggcattacataatggtaaatggttcaattcaacaaaagatctaagtattcta
aaaatatatacctccaaaagaggagcacccagattcataaagcaagttcttaacgaccttcaaagagacttagactcccacacaatgatagtgggagact
ttgacaccccattgac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 44906600 44906601 1001968 0 - 1104685506806 NA NA SINE Alu AluYb8 gaaagaacactgaggaatgacacttggaatgtgccactgttttgtcatccctgatacactgatctggagtgaactgcatagcagcataactaaccaaaga
aatttcagccagggcgccaaagcctgacaagcacagtaaatcttcttaagcaggatatttggagagaaggttttcaagttaattgaattttatgattaag
agaaggttatctagaaaactatatttgtttcacctcatgttgatggaagtctttctaaaagggttaagtctactttccatttttagtataattaattata
aatgtggtttaattatcttttaagatgaagatttcactgcctccatagcattatcttgatcgtaaaaggttattctgtatttcttaaaatatggcGCCAC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATTATGGCTGGCCACtgttcaaggttaattcattgggctggaagtatacagactccagaactgcttcagagttattag
cctaagggggaaaaatccctaacctgaattttatgattttctttgtttttctgaaaagattgacggttatgaattctctggatgtgactgttactagttt
aaatgattaaaaatgtgccagggaaagggaaattttattcctaagtcctgaattttagttctgctcccctctgggtcttatggtggaattcaggatgtta
cagagaccctgtgtgatccaggtctcccaacactgaaatgcaaaatatgtctcttggaatgaaaagcatgcaacttttctttctttactgaaacgtatta
attattgcacttagaatccattttcccatttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:SUPT3H:NM:181356:12/13
0 chr6 31546995 31546996 1001969 0 - 1104685374124 GATGATAGCAGCTCTCCTACGAA CCCAACTATCTCCCTGTCCTC SINE Alu AluY tgccagaggatgtggtcccttccaaagtcctcccacatgggggagtttgcacagggaccttgtacccttggcccagaggtggggtggcatcctcactcct
cactgtggttctcagacctttctgcctccttccttcctaagcccccaaagctgtcatcagattcaggccccactcccctcattgcagccattccctgtgg
gccccaggccgttcctctcagtcctgactcttgtagttcctggttcactatcgccctctccagcagtgctgtctccttgatcctcggtgacttcaacata
ctcagatgtgatgggccgagtaatggttcccaaagacatccaatctcaatcctgggcacccacgagtaggttgcattacatggcAAAAGGGAAAATACTG
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAGGGAAAATACTGtgtgatgaagattaaggaccttaaaattgcaagattattttggactatctgtgtgggcccgatcaaatctcacaagccattaaaa
gcagagaagctgctctggctggagtcagatgctgcagaggaggaaggcagaggagacaccgcagaagggggaggtcagaggttccaagcaggaggattgg
atatgttgcatgggatatgtgtgaggaactgagagagggctctaggagctaagggtggcccctggacaggagccagcaaggaagtggggatctcagtcct
atctgcaaggaagtgaattcagacaagaacctgaatgagcttgacagtagatttttcctcagagtcagaaggaacacagacctccccttaccttgattt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1697 1399 NA exon:NC:HCG26:NR_002812:1/1
0 chr6 40154888 40154889 1001970 0 + 1104685508110 NA NA SINE Alu AluY caaaatgtgtagcttaaggtgaaaaattcttaaacatactgggtcactaatatactttcctctaaggtggatactgaagatttgaagaccataatgaata
aatatggacaaatacatagaacactgtacttggtaaatgcacaccacgttctgttcaagtaaatgtggagcttttgccaaaataaaaggtcaggtagaaa
taaaacttcaagagataagttatacaaagtgaactctgattaaatgcaaatagtctagaaatgcaagtaattaaaaaatcatcctatacttgggaattaa
gagtcccacttacaaagtaatccataggtcaaaaagaaacttagtgaaagaaaatgttttggggtgaggtattgcttctgtttTCTACAGACTACTTTCT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
TCTACAGACTACTTTCTtgaagagaacattcgtcccttaagggccaggtaattacacaattctatcttttgagtcctcagaactgaggttgcaaggcaac
caagtgaattaagttctgaagaatgctaagcccctctgagcagacagaaacagcacggtattacctttggcagaacacaggaggaagagaggcagcagca
gaggtagctaagtagcagtcagggaagatgtgacggaattcttaaaggtagcctgtggctaaagtttgaaataatcgggggctcaaaaaatgaagagttt
gcactcaagctctttgccaacagcccacactggctgcgcatgaagacaacaggcagagaccagagtgcctggcaggataggactagctgctggtggccag
Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 47420749 47420750 1001971 0 + 1104685506267 NA NA SINE Alu AluY gcccaaaagttgacctaattgagaaaagagttcaagagagcctgagtagagtttagccaaggagataatcttttgtcaatgtataggtggatgaatggat
ggatggatggatggatggatggatggatggatggatggatggatcgatggacaaaagaacttcctcttaacccccacaagtccctttgggtacaaattgt
ttctttcctgttgtctatttaccacattttataaatctttattaggccttatacccaagagacagaatctcctaaagagaagatatcatgtaataataaa
agcagagaatgatgggtagacagggaagaagaaggagaccagctatttataaccatcaattcccatctaagaagctagattctattaaatGGGGCTCTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGGGCTCTTTgctgttctgttggactcttgggtcattttaatatccaatggatctgagagtataggctgctgggaactggataccttccca
taaaacaaacaggggaatataagggaggagaaaagatactaggaggaggagaagaaggtggtatgactggcagtctgttctgggtgagagaatattacta
aaaagttgctgttaatggtaaggctggataactttttagatttgaagatatttgtcttcctgcaacataaacctttttctgtgtccctcagtcttcaatg
agccctatgccacatgcttgaagtgaaagggactgaactccctattaagtaggaagaagagagctttgccagatgatgaatcaacctagaaactgaggaa
aagcaggag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 3057241 3057242 1001972 0 + 1104685391232 NA NA SINE Alu AluYa5 cccagaccagatttctcagagcatagccctggagtcaaggctgcctgttgacacagtattcctgccccccgttatcccagctggcctctcctccatacag
aggttggaaaagacaaaggaaactccacacgagtcaacacggaccttcccaaacatggacagagatcagcagcttgaaagggtgggacttagatgaacaa
attggacaatcatctcccaagggcaggaagggaagaaacaatgatgagaagggaatgaaacataatgatccaaaaagatcctccaatgagaatccgcaga
gagattcgagcagagatcacatccatcaaataagaacaaattactatgaaacaggctgcctgaataaaggaacaggtcatggaaatAAAAATAGGGTTGT
TCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAA
CGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAA
AAAAAAAAATAGGGTTGTccgaataataaaataaaatttaacagacagtagaagggctggaagaagatgtctgtgaggtctatctgctgggctggaaagc
gagaactaaataaaacccaaaaagaaagaagaagtttgagagaaaagttgagatctaaatgatgaattcagaaagaccaatgtctacttagttccagcag
gaagagagaaggtggagggaggaattaatcatgagataacgataatatttgtccgagctgaagaatgacatgattcttcatgaggagagagaccacggag
ggccaagtaggatgaatgaaaaagatctgtacctagatatagcctcatgacatttcaggaaagaaaaaaaaaaagatggataatgagaaggctctaaaat
cttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 165106936 165106937 1001973 0 - 1104685087006 NA NA SINE Alu AluY tctggcaacacattaaatatttattacatatttagctttgaaatctaaaatatgtaattatatatttacatataataactacatattacatatgtaaatt
cttacatagttagctttgaaatccgctgaccctcagcatcaaagccgtccctggcccatcgtaagtagtcaacacatatttgttaacggaatcaataaat
gacctcacagtagtaactacctctttgaatggcaagatattaatccacagagttgagcccttgaaatctgaaatagcctttgtctcactaaagtgcctgg
attttgagagctggccccttttggttgtttttctgatttgaattactacacacacacacatatatgaatgtccaatggtcaaaatCCCAAAAGCCTTCTT
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAATACGGTGAAACCCCGTCTCTACTAA
AAATACAAAAAATTAGCCAGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT
GCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAACCCAAAAGCCTTCTTattcaggaa
ttccccaccatctttactacttcttggattcgtttctttaccaaaacatgatgtgtttaatttggtcatttaacagcatgtctaattaccctacattact
gcaaacctgtaaatgcagagaacaacgtaacggttttaaacttttgtttctgcatggttgaaaattttgtctatagcaaaaataataacaaatgcaacga
aaggatggagttagtgttgcacactgtttatggaatatctgtagagatagtagatagagagcaattataaaaataattggaacagaggcactggttctcc
actcaaccattctttactattattatggtatctgtatgcatagtgtctctgcctgctaacagaccacaaccaatcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 160404016 160404017 1001974 0 - 1104685155827 NA NA SINE Alu AluYa5 accacacacgcattcacattttcaagcaaaaagctttacaaatggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggt
ggattactaggtcaagagatctagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggcaccc
tgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcagaggttgcagtgagccgagatggcgccattacactccagcctg
gcaacagagcaaaactcggtctcaaaaaaaaaaaaaaaaacttttacaatttttggttaggtaaataccagctataaatgggcatGTGGAAATGGCTTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
AAAAAAAAAGTGGAAATGGCTTTTatgattttgtttatatataatacaaatcgcctggcaaacagctttctaggaaagtctaggtccccgaataaagact
tgcttcatcaaacaacacaaaaccaaaccccacattagtgtcttcaagcatcagacgccaaaatcccatcaatccaggcacacaaggaaaatgtcactcg
tgaaattagcaatatgcttcagtaaaaaaaaaagctcaaggaaaagaaattatcctccccctagcgtgtgtctcatgaccccagctatggctgttatcac
acggtctcatatctaaggcatcgttcagaacgtctgctactctatacatttaaaatgacttgtagggacaggcccagtcctaccttccactctgacaacg
ggacaggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:IGF2R:NM:000876:26/48
0 chr6 167044803 167044804 1001975 0 + 1104685325725 NA NA SINE Alu AluYb9 cagaaaactcttagatgataactgctctactttagccaaacaacacagaaaaaccttggccccaccttcacccatgccagtaaaggctgtgtgggtggcc
tagaattccaccctcattagtctgtaaggaggtgccccaacatccccccaggggtggtgtccactggtggtggtggaggacactgaggactctgaccact
gcccaggggtaacaaggccataagtcttcttgggattagtggaggccacagagggagctggagcctccacccccacaaagcaggaatagccccacaactt
ccttcattgcagtaatgaggtggtgcccccaattcctaggttggagtcacgtgagacccagtctgttaaaacagaaagcttatatGAGACTCTGGATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAGAGACTCTGGATCTTtaacatagtcccccaaaagtctaggttccaatttaaaaaaaaatcactaattacacaaagaaccaggaagatctcaaaca
gaaaaaaaaaagatgccaaaccaagatgacagaatgttagatatatctgacaaagatttcaaagcagccatgataaaaatgcttcaacaagcaatcacaa
accagcctaaaaccaatggagaaacagagcctcagctaaggaatgggagatataaagaagaaccaaatggaagttttagacatgaaaaatacaaaaccaa
aatgaaaagtgcacagactgggcttaatagctgagtcgagggaacaaaggaaagaaacagtgaaatgaaggatgaagcaacagatgttctcacctcaaaa
cccag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RPS6KA2:NM:001006932:2/22
0 chr6 141175761 141175762 1001976 0 - 1104685226174 NA NA SINE Alu AluY ataaagttcaatttatcaatttatcaagttaaataaaatttcaatatcaagttaaataaaatttatcaattttattggtttctcatggttttgtttcatt
tctaagaatgcactgctaaatctaaggtcaggaaaattttcctctgcttttcttctaagagttccattgctttaactcttaacatttaggtcacagattt
attttcagttaatttttgtatacagtaggaggtaagagtttaattttattattttgcatgtgactattcagttttcttagtacaacttgttttttgtttg
ttttgtttgcttgtttgtttttattagagacaaattagtggttcgtatcacttgttgaaagactttttctccaatgatggaatttggcactctttTTTCT
ATTAGTGGTTCGTATCACTTGTTGAAAGACTTTTTCTCCAATGATGGAATTTGGCACTCTTTCAGAAAATCAGTTGACCGGCCGGGCGCGGTGGCTCACG
CTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAA
AATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTT
GCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTT
CTatcagttgaccatagacacatgggtttatttctagagtttaaattctattcctttgaactatatgtctgtcctcatgacattaccacactgtcttgat
tactgttgctgcatagtaagttttgaaatcaggaagcataagtcatcctattatgttcttttaaaaatttgtttattttgggtcccttgcaatttcatac
aaattttagaatcagtttgtccatttctaccaatcaatcagttggaattccgacagagattgagttaaagttgcagatcaaattgaggaatattgatatc
ttaacaatattaagttttctggtccataaacattggattttttaaattcatttaagtatttaattttttgaataatgctttataattttcagagtat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 149039896 149039897 1001977 0 - 1104685224614 NA NA SINE Alu AluYb8 aactttgccttctggctagattcgttttacccttactgatatttcctccccttatttgtagtttttgtttcaattatccatggtcacctgtggtctggag
attgatgattacagtgcagtaagatattttgagagagaaagagagaccatagtcacataactttattttattttgttttattttattttattttatttta
ttttattttattttattttattttattttattttattttatatttgagatggagtctctctttgtcacccaggctggagtgcagtggcaccatctcaggt
cactgcaacctctgcctcttgggttcaagagattctcctgcctcagcttcccgagtgactgggattacaggtgcccaccaccatgcccggctaatNNNNN
TTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGTGGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCC
CGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGTTAATTTTTTTTTTTTTTGNNNNNttagt
agagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatg
agccaccatgcccggcccacattcacataacttttattacggtatattgttctattttattattagttattattgttaatattttgcttgcttaatttat
taattaaactttacattaggtatgtataggaaaaaacggtgtaaacaggatttcgtactgtgatggttaatattgagtgtcaacttgattggattgaaag
atgcaaagtattattcctgggtgtgtctgtgagggtgttgccaaaggagattactatttgagtcagtggactgagaaaggcagacccacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 150952570 150952571 1001978 0 - 1104685224164 NA NA SINE Alu AluYa5 ctcagcaagatgttctgagctcctatttcttttaggaaatgtatccttccaactttaggaacagaagggatcttttaaaactattcatcaagttaaaaaa
gaaaaaaaaagaagataggccaggcgcagtgactcacacctgtaatctcagcattttgggaggccaaggtgggcagatcatctgaggtcatgagtttgag
accaccctggccaacatggtgaaaccccctctctactaTGAGACAGAGTCTGCTCTGTCGCTCAGGCTGGGATACAGTGGTGTGATCTCGGCTCACTGCA
ACCTCTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAGCGGCTGGGATTACAGGCGCCCTCCACCACGTCCAGCTAAGTTTTGTATTTTT
AAAAAAAAAAAAAAAAAAAATGAGACAGAGTCTGCTCTGTCGCTCAGGCTGGGATACAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTT
CAAGAGATTCTCCTGCCTCAGCCTCCCAAGCGGCTGGGATTACAGGCGCCCTCCACCACGTCCAGCTAAGTTTTGTATTTTTggtaaataaataaataaa
caaaatttaaaaaagaagatagccttgatatgggctaactaaatgaacaaatatcttctgtaatcttataacgaaaaatataatacataaagatgaaatg
accatataccttctaggggtactacggtctatttccttccttcctgttcatctactctggctttatagttcaagtcctcctcacttaagcctccgcctgg
gatatgcccactttcaggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 155093351 155093352 1001979 0 + 1104685222969 NA NA SINE Alu AluY gtaatagattccactagataaaacagagaattgggtaaagcaatagaaaaattaagcagataagcagagattacattgcctcttaggttttctattttgg
ttcaagtccctcccttggactcagctacatttctgacttttggttacatgagaaaaacctgtactgtaataatgaattattattttatgcttaaactagc
tcaaattggctggttatactggcaatcagaatcctagcgtacatacatacacacacacacacagacacacacacacgggtactgttttcacactctgtat
gtagttgtgtataaattttgtatatagtcattgcactggaaccccaggctcccctctaacccttctcttgctttatcgccttcttatattACACAATCTT
GGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAACACAATCTTtaggctgggcgaggtggctcatgcctgtaatcccagcactttgggaggccgaggagggtgaatcactggaggtcaggagtt
tgagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgaacgtggcgtcggttgcctgtagtcctagctacttggga
ggttaaggcaggagaatcgcttgaacccggaaggcggaggttgcggtgagccgagatcgcgtcattgcactccagcctgggcgacaagagcaaaactcag
tctcaaaaaataaataaataaaaaataaaagccgggcgcggctataatcccagcactttgggaggccaaggcaagcggatcacaaggtcaggagatcaag
accatcctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 159124419 159124420 1001980 0 + 1104685156227 ACAGACCTTTGGCTTGGAGTT CTGCCTTCCTCTACCAGGACT SINE Alu AluYb8 acaaacaacgtaactaatgcgaggcaattaagatatctcctgcagactcccagcatttagctcaagtgtctacacgtacaggctattgtttacagctttt
caagtctctcatcacaccatcaatattcttggttggattagcacaaacctcgagccaggagtcgagcactggctgggctgcctgcgaagtagctatggat
ggatgtgctggtacctgcaggcagctggggtggaatctcagaggcagggggaggagaggcagcctctgctctattctgccttcctctaccaggactgagc
ccactatcggccccgcccaccatgagagaggataacccacacctctggaccaccctttgagagggccacagcagtccaaaagccctttAGGAAACTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGTCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAA
AAAAAAAAAAAAAAAAAAAGGAAACTTTTTctttgggatagtaagttgctaaataaatacttcaaaaataacccacaaatttgccattttgccattgttt
ccaggcccaccaccctacctactgaagataactgtgaacttcaactcacttatcatctttctcataaatattcagtccaagggcatcaactccaagccaa
aggtctgttcctttcttgttttttatctcgaaatagttgattccatacatttccaggtcctgagcaatcttcaggtattccaacatagcattatctctaa
ttggggagagtgaaacaggcagagtcactggtagcactcaatatctagaacagtaaaacctttccagtatttttaaattaaggtgccttgtgtaggatgg
gctcaatgctgtgtgctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 633 304 NA intron:EZR:NM:001111077:7/14
0 chr6 114175285 114175286 1001981 0 - 1104685231905 NA NA SINE Alu AluY gatttgagagtatcaatactgtaaagccaatcttacttctgaactttttcttagttctgaatTTTTTATTTATTTATTTTTTAAGATGGAGTCTCACTCT
GTCTCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCGGCATCCCGGGTCCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGG
ATTACAGGTGCCTGCTGCCACACCTAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTACACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTA
AGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCCTCCATTTTGACCTCCTTATAGAACAGCTAACTGTT
AAAAAACTTTTTATTTATTTATTTTTTAAGATGGAGTCTCACTCTGTCTCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCGGCATC
CCGGGTCCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCTGCCACACCTAGCTAATTTTTGTATTTTTGGTAGAGACAG
GGTTTACACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACT
GTGCCTGGCCTCCATTTTGACCTCCTTATAGAACAGCTAACTGTTttaaaaaaataaaaaaaggaaaattgcctggccaatctagggataccagccaacg
atgtggg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 137295902 137295903 1001982 0 + 1104685227002 NA NA SINE Alu AluYa5 aactttggggtcaatatctcctttaatattcaaataatataacctattccttcaccttatataaccttggaaagcacagacctgcactagcatttcaaag
gcgtccttgagcaccactgccctatcttagcagcatagctcagagctgctggttacttcctgctccaggctgttgtgctaatgatcactttgttaaaaaa
acagcttcattgaggctgggcatggtggctacacctgtaatcccagcactttgggaggctgaggtgggaggatcacttgcgcccaggagtttgagaccag
gctgggcaacataatgataccttgtctctatttttaaaaattaaaaaaaaaaaaaaactcattgaaatataatttagataccatAAATCAGGCAAATTTT
TTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGC
CGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGATCC
CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATCAGGCAAATTTTagcgtacaactagtgatctt
tagtatatttacagagttgtgcaatcatcattactgtctaattttagaacatttccttcacctcaaaaaataaaaaaccctacacccattggaagtcact
acccatttcttcccaatcctccagcccccagcaattactatttactttctgtctccatggatctgcctatatggactgatcatttcttggtatcctaaat
tgtttttgcagcctgtttttcttaacctactcctgcactcctgtttttacccaaagcattgcagaacaaagctggcattgggatgcagttgacaagattt
actgaacgcttgatgccacctactataagggcatctcaatgtagaaaaggaaaacgtgaaagct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 131099280 131099281 1001983 0 - 1104685228316 NA NA SINE Alu AluYh9 aaggtcagtattttatcatgcttaacatgatacaaaattctgtttttgaatagctaattgctgctttagtataatctggcagcttacaagtaaatgaaga
cacacataaatgtgatctaaaatgaaattgtctaaagatataaaagtagctgtattagggagtatcacaattactctttcttagcctctttgtttaaatt
tttcaaatgtgttagtttgttgatggatgatgtcaagttctaacacaaaaaattaaacataaacataaccgttgttcttaaatggcacaccttttctttt
ttcttgttcttaagaaagcacttcttttatgacattttctacctttgaaatatcattactggtgcactgtagatagttctctGGTAGTATCTCCTTTTTT
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCAGGAGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACGCG
GTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAGGTAGTATCTCCTTTTTTaacatccctaattgaactcaaatcagtatgtccttgaaacaacaaaaaattgtaatagataaccagtacattatgaga
ctcagacaatgtaaagggatttagtattgtaatcagatataacttacaacaaagtgtattggctcataattactactgagctgcaagtaacttccatggc
agtagaaatctgcttatggaaatgactctaactagccttcttttacagggtcaacccaggtaaatgtgggggctgccgaataaatggaaaagggacctga
gaagatgccaaacttgctctgggccataaccaagagacccaggtgctgtggtcttgtatgctttttgattagggatgatgcttctgctccaggctcttgg
tagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 88322581 88322582 1001984 0 - 1104685463207 NA NA SINE Alu AluYa5 ccatacaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtccaaaacaccaaaagcaatggcaacaaaagc
caaaattgacaaatgcgatctaattaaactaaagaacttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatt
tttgcaatctactcatctgacaaagggctaatatccagaatctacgatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaacaagtggg
caaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgNNNNN
CAAAACCACAATGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCA
TCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA
GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA
AAAAAAAAANNNNNcacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaa
taggaacacttttacaatgttggtgagactgtaaactagttcaaccattgtggaagtcagtgtggtgatttctcagggatctagaactagaaataccatt
tgacccagcaatgccattactgggtatatacccaaaggattataaatcatgctgctataagacacatgcacaggtatgtttattgtggcactattcacaa
tagcaaagacttggaaccaacccaaatgtccaaccatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaa
tgatgagtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ZNF804B:NM:181646:1/4
0 chr7 94715446 94715447 1001985 0 - 1104685461848 NA NA SINE Alu AluY agagacaatgacaatttaaaacaggaataggttatttactgcatcttttattaagcaatgttttgtatcaagttgtttatttagcaaccgccactaattt
aaaattattattcacggagctggactaacaccgtgaatgatgtatagtcgtattttgactaaagagctgcagagtgaattagctgagaatagcatttaac
caaaatagccttgctaattcatctccatttaaaacacacggagaaaccaaaacaagtgttcaatgtgaacaacaaaagagatcattagtggtagtggtgg
tggtgattgggggcgggggagggtaattatgttttaatttttaaaagaccattgaaacaataaagaatattgctttaaaagtaatttaaTAAAAATATAT
ATTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTACAAATACAAAAAATTAGC
CGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCG
CGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAATATATaatctttgaaattgt
atatttgataaaactaaacaaaattgctagaattgtgtctcatacgagtgccttaaagtttgtcaatgaaaatatatagactaataatacatactccctt
ttatcaagaccttttctcccccacaaatttaaattatgtgaaccaaacaactaaaaatttccagtagtacctggcacttaaattatgcatgtattaagtt
tataagatttaattattagaaattagaaatggtttataaaacattgatgtgctatactaaatttgttcctacaaatgattaaatctatttataataaggt
aagtgaagaggagatatagtagctttgcttaaggaattagtaatcaaaacatactttgcatacttgaaccatta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PPP1R9A:NM:017650:8/16
0 chr7 100392039 100392040 1001986 0 + 1104685014406 NA NA SINE Alu AluYa5 accaagtcaggaatgctggcagccccttctgaaaaggatgcacgtggcatcccaactcatgacctctgctcccttcccccttctggtgcactttgggttg
cttctggaggtgcccctccaaggacccatatgttcctggctggggcactctctaaggctgtggacccctcaggaatggcagcatcgtggtggactacctg
gtcctgctggagatgcccttcagcccccagctggagagcgagtatgagcaggtgaagaccacgctgaaggaggggctgcagaacgccagccaggatgtga
acagctgccaggactcccagagtgagcccaggctggaagggagggccagggccctgaggtgtcaccccagcccactccagctcagccagggggccNNNNN
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCAGCTAAAACGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGA
GCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAACTTACCTNNN
NNtggtggctcatgcctgtggtcccagttatttggaaggctgaggtgggagaatcacttgagcctgggagttcaaggctgcagtgagctatgatccccct
attgcacttcagcctggatgacagaatgagaccctatctcaacaataaaaaaaagttaggctgattagcaatctaattcaatctgcacccttgatcctcc
cttgccatgtagtatagcatagtcacagttctggggattaggacatggacatcttcccactatgggggcagccaggagggaccacaggctgaccgctatc
tttctgcctgctttcactcatctccacacaattccttccttcctctcgctctcttctttcttttcttcttttcttttgtctctttctcttttctttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 100787123 100787124 1001987 0 + 1104685065844 NA NA SINE Alu AluYb8 ttcaaggccagcctgggcaacatgccaaaaccctatctctattaaaaatataaaaatcagctgggcttggtggtgcatgcctgtagtcccaggtactcgg
gaggctgaggtgtgggaggaatgatgctcaggaggtcgaggtgcagtgagctgagatggcaccactgcactccagcctgggagacagaggcacggtttaa
aaaagatgaaactcagatgactgtcttattcctgcagtttctgggatgtattcatgcttgtcctaaagactttcatcctaggctgggcacagtggctcac
gtctgtaatctcagcactttgggaggctgaggtgggcggatcaccaaaggtcaggagtccaagaccagcctggcaaacatggtgaaaccctttctNNNNN
TTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGC
CGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTG
CGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCANNNNNaaaaaaaaaaaaaaaaattagctgagtgtggtggcagacgcct
gtagtcccagttacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagactataccactgcactccagcctgg
gcgatagagcgagatccagtctcaaaaaaaaaaaaagaggcttttgtcctaaaatactctagcactatatggagtaatgttattcctttgtctccctgtt
tctccatggtcactctagcttgggtgcagcccctggcactggaaaaatgagttgaagataataaacgatattgctgttcccttaccgtgatgcccagcag
cataaagcccggttgacagcaacatggaatatggaatttctctgttctttaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 49028171 49028582 1001988 0 - 1104685051163 NA NA SINE Alu AluY accttgggcacatgtcaggacgtcttgagatgcgtcacaggcaagtccttaaccttggcaaaaccaactttctaaatcgattgagaccagtttcagacgc
tttttggtttacaatacacacgcgcgcacacacatgcacacgcgcacgcctttaactaccctgaaacacaagcttccatctttgcagaactactatagaa
ttatagtgctctaaatgctgcctgagagagctgtgctgaagtactgaagtacatgtgtccatttattaactaagttgtttaatttttttccctaacgagt
tgtaggatttcttgacgtattttggatataagtattttataaaatgtgtgattgagaatattttcctccagcctatgacttgcctatttattattNNNNN
ACATTTCTATATACATGGTAAAATCAGAATGCCATTTGTTAGAACCAAGCTACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGG
CCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGG
TAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGC
ACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAANNNNNcaagctacaggcattttgaatgggactgcactgaatgtatacac
caatttgggaatattgacatattaacaactttgtgtctgctaatccatgatcataatgtatttctttttctatttttagaccattatttatgtattccag
cattttttaatacttttcagggactaggtattacatatatttcattagattgattcctatgtattttatatatttaatgctgttgtgataacctttttta
tttcatttcaaactatcctttgctagtttttatatataaacccatgtcttgctattttatgaaaaggtttagttaaaattggtgttaattcatctttaat
tatttcatggaatttatttttggagctgtctgatctcacatttttctttgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 56212412 56212413 1001989 0 + 1104685642712 NA NA SINE Alu AluYb8 ctaagtctgaagacctgagaatcaggggagctgatgatgttaactccaggtttaaatctgaaggcctgagaactggggatgctgctgatgtaataggact
tacatcctattcaaaggcccaagaacccagagctctgatgtctgagagcagaagatggatgtctcagctcaagaagaaagttaatttgccctttctctac
ctttttgtactgttcgggccctcaatggaatggatggtgtcctcccacattggtgagggccagccttctttactcagtctactgattcaaatgctaatct
cttccagaaacatcttcacagatgcacctggaaataatgttttaccagccatctgggcatcccttaccccagtcaagttgacacaAAAAGTAATCATCAC
CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTGCTAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAATCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAAAAAAAAAAAAAGTAATCATCACattggtatatgaagaggattaagtcactcagttttgaataggtttgtgagtgctgaactttctttgtcaaggctg
attcgagttcataatgatctgctcactgtgtccctggagaagaagtaacaggggaaatgatgctcatggactgtcatggtcgttactagagactagatat
ttcttgtattctttataggggtgtgatacagtgattgagggcatctcctgtggagttagacagtctgacattactgttccagctctgtcatttgcttgct
ctgtgactgtgggtcaatttctcaacattctaaagtcctgcttgcctcatctaaaacatattaatattttacttgagaattgctgtaaagttctgacaag
ataatgcatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 66247490 66247491 1001990 0 - 1104685488620 NA NA SINE Alu AluYb8 ggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcaagaggtcaggagatcgagaccatcctagctaacacggtgaaa
ccccgtctctattaaaaatacaaaaaaattagccgggcgtgctggcgggcacctgtagtcccagctacacgggaggctgaggcaggagaatggcatgaac
ctgggaggcagagcttgcagtgagccaagatcatgccactgcactccagactgggagagggagcgagactccgtttcaaaaaaaaaaaaaaaaaaagaaa
ctaaaacagggtaaaatgcccatatgtacaatagccattgtattggtctgtaaaatatgtaaaagactgctaacaactGTGAATCTTGTTTTTTTGTTTT
CGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCA
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAG
TGAATCTTGTTTTTTTGTTTTatcaactgctcaggatgggaaagtggcctctctcagtgccagcaccagcaagaagcaaattagtaggcctttcaaatca
cccacatctgactctcaccatcgactgattgtatttggagctggcattctggatttttcctgcatatgtttttgtttaaaatgctgtattagtttttgga
aataaatataaatgttgcctttgtaagtatcagttaaaaacgttgtattgaaagactgctgtgctgtaggaagtttggatattaaaaacaaagaggaggc
caggcctggtggctcacgcctgcaatctcagcactttgggaggccaacccgggcagatagcttcagctcagagctctagaggaggctgggcaacacggc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TYW1:NM:018264:13/16
0 chr7 57350909 57350910 1001991 0 + 1104685269666 NA NA SINE Alu AluYa5 agtgcagtggcacaatcttggctcactgcaacctccatctcctgggttcaagcaattctcctgcctcagccttctgagtagctgggattacagtcatgcg
ccaccgcgcccagctaatttttttatatttttagtagagatgagctttcaccatattggccaggctggtctcaaactcctgaccttgtgatctgcctgcc
tcagcctcccaaagtgctgggattatgcgcgtgagccactgcacccagtccatgactcattgtaatgctcgctagagaacatcttccccacagtggttgg
ttagtgaccagatggatgggatgactcagcgatgatgggtgttagtcattctctgtcttaggctacattggcgcttatacaattgacAAAGAGTTGGTCA
AGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAC
GGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATGGC
GTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAGAAAAAAAA
AAAAAAAAAAGAGTTGGTCAtggggcacattacgcatggtctgagattgatctagttgttgctattgctgaatatttagcttgctagcagcaaagattgg
ctctgagcatgtattacagtgccatctgtgagaaactcctctagttattaggtggcaagttgattaaactgatcttccttcaacctagagatgaaagcat
tttgcgtttatttgaattattacctattcccaacatggtctgtcttccctggccttggtgcctctgctggcactaccatacaagggtgaaggaatgcctg
atttactgatacggaattaccaaccacattgcttcaaatcaagagatccattaggttggagcaaaggtaattcccgtttttgccattacttttaaagtat
tccttgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 36218691 36218692 1001992 0 - 1104685573744 NA NA SINE Alu AluYa5 aacctcaggcgatctgcctgccttggcctcccaaagtgctgggattataggcgtgagccacctcacccggccacagccatgctttcttaaggtatacttt
tgttaatgatgataaaatatatgcttgttataggaaattttgaaaatacaaataataaatttaaaataaccactgtttacatactggtatattcctacat
gtacatgtgtctttgtgtcttatatttagaaactgcaatcatatcatgaatacatacgatagatggttacacagtggccccctagtactcacctcttgtg
tagtcggctcccactgagtctgggcttggccatgtgacttcctttggccaatgggacattagcaagcatgatgcaaacagaggttAAGAACCACTACATT
GCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGT
GAAACCCCGACTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAACCACTACATTaataaccttaaaaaatatttttaatggttatattatattctggtgtatatgtactataatttactgtttcctc
tattgctgggtatttaattttttcacatttttctgacttatgattaatgaatatctttgcatatatatgggatgcatttctgacgatctccttaagctgg
atttccagaggtggacctattgggtcaaaagatttgtacatagttaagcctcttcaaactgtgtgacagaaaagctatttctagctacactccccccagc
aatttagaaatgtatctttcttaacacagtccccactgggttacttcatagaggaaaactgacatctcattttactttgcatttgtttgattacccataa
gttaaacatttc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:EEPD1:NM:030636:2/8
0 chr8 9845312 9845313 1001993 0 + 1104685245064 NA NA SINE Alu AluYb8 gtttgcttccctcccatgaccgactgagagttttgaacaaatttctgggaaaagcgcaaggatgggtctgctatgagctgtccgccagtgtggtgctgat
atgcacattatgccacctagctattgaggagccggggagctgtccctgcaacagccacagcgaactcctgctgcttgactctgccgcacagcaaagaggt
caaggtgtgtgtgtgtgtgtgtgtgtacatgtgtgtaatttgcaagtaatgtggctatttctatcattccagtgaaaagtcatccctgacgattgggaga
gctcataggctatggcctttcaaaacattcttcactaaggggagagctgagtctggtgaggatggagggctgcggttcaagtcagctatCAGACTCTTTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAATATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGAGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAACAGACTCTTTTactctctcctagtctctttggtccagggcgatgacttgtctgggaaatgtggaatacaacaaaggagtctgtg
tagacaacttgcctagtttggtgctgatttttaggtaagtgagaagtaaaacctgcaagtgcttctttcctgaagcatctcaaggaaatgtgccaccagg
gccttcttctgggatgtactctcctaagagcatttctgggctcagggacagccttcaggccttaatttttcttctgagaatcccaagggttggatgtttg
gctcatctcttttggtgtcctgtcttgacacaaccttgccaaacaggacatagcccataatttttcttccttgcttcccatctctcagtaaatgcacaat
tccaagcatttttgtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 13605663 13605664 1001994 0 - 1104685164538 NA NA SINE Alu AluYb8 cctgtaatcccaacactttgggaggccaaagcgggcggatcacaaggtcaagagatcaagtctatcctggtgaacacggtaaaaccccatctctaaaaaa
atacaaaaattagctgagcgtggtggtgcgtgcctgtaatcccagctactcgggaggctgaggcagagaatagcttgaacctgggaggcggaggttgcag
tgagctgagatcgtgccactgcattccagcctggtgacagagtgagactatctcaaaaaaaaaaaaaaaaaaaaaaggaagtctgaaaaatgacattaca
tagtaacaaattttgagtctttagagtattcttagttgtcagaaaaaatcattttcaaagtagatgatcgtgatgaggtataccaCTCAAGGTTTATTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
ATAAATAAAAACTCAAGGTTTATTTTactgtaaatatttatatacatatgaaacatttatataaatatgaaagcagcattttataattttatgtggaaaa
gttacatcctttaccttcctcatttaggtaaaagcctaataaaatgtaatctgtatcaatgcaagatcagttaagagacagaaaccataccagtaatcca
aagtgtaaaaacagaatatgaggaaatatgaattcacaacaggggattagccaataagagcaaagggaatctaaaaaatatagctgaggcgggtggatca
cctgaggtcaggagtttgagaccagcctgaccaacaaggtgaaacaccatctctaccaagaatataaaaattagctgggtttggtgatgggcacctgtaa
tcccagctact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 15443720 15443721 1001995 0 + 1104685163920 NA NA SINE Alu AluY tttttcctggttaagttgtacacctacacagggctcaaaatctgaattgggtttaagatattaacaaaattttaatagctgggtagagacagtgaaaaaa
taccctcatatgcagagtgattgtttccctttctctttattcttagtctgaaacaaatattgtgtgttcaattttaactaatgtacctctcttcagcttt
taaattttaacatgaaagtaggtcatatgaaattattggtgaagttctgctaagggatttagagaaccactgttaaactgaaattgtatttacaaatata
aattaatgattttttttagcacttggtatttgtgtaccatattccaagagttttagatttaggagttcacgagaaaggtagaagagtgCTACTTTTTCTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAA
AAAAACTACTTTTTCTTcagttttttttgtggattaccaaagcaaagggcaataaaagatgatgaagaactccatggaaattgtgatgttttatctccta
ggacgatccctaggaccacgccaattttcatttgaagggtgtgaaccccaaagtattttaagactgaccttaatcaattttttttttttttgccagtgtt
aaggatgcactggtgacacagcctctggaggtcctgatggcaggtgcccaaggtggtcagggtacagctggcttttatacattttagagagacataatac
attgatcaatacatgtaaggtctacattggtttgatctggaagggtgggacaactcaaagggggaggggcatccaggtcataggtagatttaaaaatttt
ctgat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TUSC3:NM:178234:1/10
0 chr7 147335334 147335335 1001996 0 + 1104685327568 NA NA SINE Alu AluYa5 gaatatatagaacattctagcaaatctttcttagactattacatctttgacttacatgtttatgaagaatcatctgtgcctctgattggccttatataaa
tacaagggtcatttcagagagcagttcttaactgacttggaaaagcctaagagccaaacaattcagcagctcttccacattgatggcaccagccacatgc
agtacatgtgctttacgcatttcattattgcatctctttgtcttatgagtttattgatggaaaattgtgccttgtcttttatcaagtaaacatatttcag
aagacatctacatgctatcaacaaaacagagcaaattcagaaaatgtaggacttcgttgtacttgggggattacttcaattgccttaatagtctaNNNNN
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAATAGTCTACCAGAGNNNNNatattacattctttaaagttcagataaataatttgtgctgcttatgtaggaagtaagctattctccactgtaagc
agtcttttatgttgacaatatagaaataatctgtcttataagctacactgcatctaaagccctgacactacagatttatgcatacttctggctgaaaata
atattgaaatgtgaaaatgaaatctttcaccaaatctctgggaacataggtttgaggctggctttggaatcactaaaaattcattgattcccgaacgtag
actaagtaccataagaactgactagggtacttgattgagcttgtgctgtatggtttattacactggtggtaggaatgtgtcaatagtgattatactgctc
taannnnnnnnnnnnnnnnn Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CNTNAP2:NM:014141:15/24
0 chr7 157141549 157141550 1001997 0 - 1104685310097 NA NA SINE Alu AluYa5 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnntgatcctggtaagcccagtctttgcactccctgccacacaaacaccagggccctccttcctcggcccctgcaacacccagcat
ctgcgcccgctgaccctcggggactgggcgatgatggctgcaccctgcccgctgcagaggctgacaggcagggctctttctgcagggagtcttcttaatt
tagataaacaagaatatttacttcctgagatctttgccgtgcttctgcctggaacgtgcagcccccacacacagtccctggtgtgCGGGTGCTCACTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGAAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
ACACGGGTGCTCACTCTTctatttagttttcagtggaatacacgtctgttagtgcctaccatgtgcgctgccgttttgggcctctgactcggaagcagct
gctgtctccttggcactcaaggccagcaagcgtcatttgggtaaataaatgtcactgctgtgacagcaaggcaggaggaggtgtgggctgggtgctcggc
tcttcacaggagccttcctggtggcgccggccagaggctcacggcgacgcggcttcagcggccttttccagggtcctcgctggagtgatcacgcgtgtgt
ggccgtgcattgccactccatacataatgaatgtccgggtgttattaggacagctgtcaatagcgcagcacgtcctgctggctgcctcctggatctccag
gcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PTPRN2:NM:002847:14/23
0 chr7 133232136 133232137 1001998 0 + 1104685011244 GGTATGTGCTGGACTCATGAAA CTATCTCCTCATTGTCCCCTTT SINE Alu AluYa5 aaagtgcagtacataatcaggtgctacttgtacagtatagactgtgagggcagaaggaacaaaaaacaagaaagagaaagggttgtagtcgggaatggtt
ttgcaggtgaggtatgtgctggactcatgaaatttacggaggtggagagaaacataaaggcaggggtggaggaagcaataagacagttgccccctatttt
attttatttattttatttatttatttattcatttTTTTTTGAGAAGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGC
AACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCATCCCCCTGAGTAGCTGGGACTACAGGTGCGCGCCACCATGTCTGGCTATTTTTGTATTTTT
TTTTTTTTTTTTTTTGAGAAGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCG
ATTCTCCTGCCTCATCCCCCTGAGTAGCTGGGACTACAGGTGCGCGCCACCATGTCTGGCTATTTTTGTATTTTTtttagtagagacggggtttcaccgt
tttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccggcccagt
tgcccactatttaaaggggacaatgaggagatagtttgactggaacagagttcctattagaatctagtaggagataatgttgaataggaagattaagacc
aactaaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 624 447 NA intron:EXOC4:NM:021807:12/18
0 chr7 136020262 136020263 1001999 0 - 1104685012012 NA NA SINE Alu AluYa5 actaaaaataaaaagcaataataatactctaaatggtagtggtactgtaacaattcagttgatattttctgctcaaagtctttacaattgacaagtcacc
tcttacactgtattttatttttatgtgttaagtgagactactgacttagataatctctgaagtccctttcattatataatattgtaactctgagcttaat
tcttctatatatctgatagaatttctctatgatcattgtactagcatataataagtagggttcacactgattcaggaagagtttttaaaaacatatttaa
tattctcaggtaatttttcagaactgttaaaaactatttagccttttgacttgtggaaaaaaaacaatagttgtatctaaggatAAAAAGATGACAAGAA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTTTAAAAACATATTTACCGCCACAGGCACTTTCAGACTGGGAGACACTATTTAGCCTCTGACTTGTGGAAAAAAAAAATAT
TGAAAAAAAGAAAAAAAAAGATGACAAGAAtagaataataacaaaaagactaaaatatttcatagcttctcaattctgtatgccatattttacataaatg
ttacaaaattcaaggaagtaggtattttcttcatttttttttaatctgcagagtggtagtggaacttgccaaggacatacagttttagccacagtttaac
actagaccttctggtttcaagtccaaacctctagcaccaatctacggctgtttcttgatgacaggcctggtattctccactaaattcatacttttcatga
aaaaataataatgtcaagttctccacattaggaactgctatggtctgaatgtttgttttcccccaaaatccatatgttgaagttataacctccaagatga
tggtattagtaggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 106409413 106409414 1002000 0 - 1104685588621 NA NA SINE Alu AluY cctgtttccctaatggcagacatggcactcattctatatctcatggtgtactaggccgttcttgcattgcataaagaaatacctcactttgggcgcggtg
gctcacgcctgtaatcccagcactttggaaggccgagatgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctc
tactaaaaatacaaaaaaattagccggacatagtggtgggcacctgcagtccctgctactcaggagggtgaTTTGAGACAGAGTATCGCTCTGTCACCCA
GGCTGGAGTGCAGTGGCGCAATCTTGGCCCACTGCAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTGAGCCTCCCGAGTAGCTGGAAATATAGG
CGCATGCCACCATGTCCGGCTAATTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATTTCCTGACCTCCTGATCTGC
CCGCCTCGGCCTCCCAAAGTGAGGTTTTTTTTTTGTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTCGAGTGCAGCTGCACGAT
CTGGGCTCACTGCAAGCTCTGCCTCCCGGGTTGATGCCATTCTCCTGCCTCACCCTCCTGAGTAGCAGGGACTGCAGGTGCCCACCACTATGTCCGGCTA
ATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCATCTCGGCCTTCCAAAGTG
CACTTTGGGAGGCCGAGGCGGGCAGATCAGGAGGTCAGGAAATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTGCTAAAAATACAAAAAAAT
TAGCCGGACATAGTGGTGGGCACCTGCAGTCCCTGCTACTCAGGAGGGTGAGGCAGGAGAATGGCGTGAACCCGAGAGGCAGAGCTTGCAGTGAGCCCAG
ATCGTGCAGCTGCACTCAAGCCTGGGCAACAGAGCAAGACTCTGTCTCAATTTGAGACAGAGTATCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAA
TCTTGGCCCACTGCAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTGAGCCTCCCGAGTAGCTGGAAATATAGGCGCATGCCACCATGTCCGGCT
AATTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATTTCCTGACCTCCTGATCTGCCCGCCTCGGCCTCCCAAAGTG
AGGTTTTTTTTTTGTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTCGAGTGCAGCTGCACGATCTGGGCTCACTGCAAGCTCTG
CCTCCCGGGTTGATGCCATTCTCCTGCCTCACCCTCCTGAGTAGCAGGGACTGCAGGTGCCCACCACTATGTCCGGCTAATTTTTTTGTATTTTTAGTAG
AGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCATCTCGGCCTTCCAAAGTGggacatggtggcatgcgccta
tatttccagctactcgggaggctcaggcaggagaatcgcttgaacctgggaggcagagattgcagtgggccaagattgcgccactgcactccagcctggg
tgacagagcgatactctgtctcaaacaacaacaacaacaacacccacaaaagaaatacctgaggctgggtaattgaggaagacaagaggtttaattggtt
catggttctgcaggctttataggaagctggcgccaacctttgcttgtctt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 109070589 109070590 1002001 0 + 1104685587973 NA NA SINE Alu AluYb8 tcagcaaagattatctactttaagagagacttaagggtggaggtttgaggtaaaaccaagagatgtcagttatgatggtttgaaggaaaagtataaactg
gcaatgtaaacaagggcagggtatttatgagtagttgagaatggtgaataggagcatgactagacagaagatagtagggatgacaagtttttggggtgca
gttcaagttggggcagtgtcaggaatgagactggggcctaataaaatggagtgtccatacaggagcttaaatgggctgtaccctgtagcaccccaaggac
agacctgaattctgagaagggcaaggggtaaaagtattgtccagtcctttttaagttggaggctgagcttggtgaggtgtgtttttACTAATGGTCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTTTTTACTAAAAATACAAAAAATTACCCGGGCGGGGTGGGGGGCGCCTGTAGTCCCAGCTACTCGGGGGGCTGAGGCAGGAGAATGGTGT
GAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTCCAGTCCGCATTTTGGCCTGGGGGACAGAGGGAGATTCCTTTTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACTAATGGTCTTTTtgttttacctttcctgaagactgaggatggtaagtggtatgagggttccactgaataccaacagcct
gagaaactgcttgggtgatttgactaataaaggctggtccgttgtcggactgtatagaggtgggaaggccgaatcgaggaattatatctgacagaaggga
agaaatgattgtggtggccttctcagaccctgtgggaaaggcctctaatcatccagtgaaagcgtccacccagaccaagaactattttagtttcctgact
ccaggcatgtgagtaaagtcaatttgccagtcctgggcaggggtgaatccccaagcttgatgtgtagggaagggaggtggcctgagaaattcctgaggag
tagtagaatagcagatgga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr7 117870551 117870552 1002002 0 + 1104685586189 NA NA SINE Alu AluY aagtgggagctaaatggtgataactaatgaacacaaagaagggagcgatagacactggggtccacttgaggtacagggcgggaggagggagaagagtaga
aaagataaatattgggtactaggcttagcatctgggtgatgaaataacctgtacaacagacccccatgatatgagtttacatatgtttcaaacctgcaca
tgtacccctgagccaaaaacaaaagtttcaaaaatttcttttttgttctttagcatagtttcataattttttatatggtatattctcatgtcttggtaag
tgtattaatagaaattgtatatttttgttgtgtcccaagcttcctctataattttattttttaagtaaattctttttatgtgagcttAGGAATTATTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGAATTATTTTTattgtttaccaggattatgactgaagattatatataaacttttaaaaatctcagtttctttatttgtgtgatagagata
aggagagtcattacatttcatgtatcttatcatatttacaaactctttctttgtgccagtcactcctgtagcagacgccaggagaagagaagtcacaaag
acgactggtttttgccttgatggagcttacagtctagaagagaagatagatattaaacaaagtcttcacctacaatgatgggaagactacaaaagggaag
tgaacgttttattagagcaattaatggagaattaatgaattaatttgggtataagactatagtgtcaaagaaagcctccctagggaagaaatgtttcaag
tgtaactt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 96726456 96726457 1002003 0 - 1104685364674 NA NA SINE Alu AluYb8 agacaactaggcaatgtaataggcattttttttttaacatttccatagtatgccccaaggtgctattgcttatcttgtttagaactgtgctttaatgtgt
ttcctcagttgtaacccacactggttctagtttggggttttttcgttttattttatttacagggcccttttgtgtatctcttctagtgcctggcttccct
ctataaacctattcgcagagaattcagttctctcaagctgctgtcaagctgcactgaagcttttcctgagatccctcttctgagacaagatgattctctt
tttattctctctcccttatttccatcaagacctccattcagaggatagtgtaaacagatacacccaattatacaaaagtgtccatgAATGAGAACTGTTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATGAGAACTGTTAttctcatctgaagattgagtacaaggctacctcgctattcaaggtgtggtctgcaaaccagcagcactgg
cgtcactttggagcttgttagaactgcagaatcttgggcccttctccagaccaatttgcatgtgcagtagagtttgaggagctctgcgttaccaatagtt
aaaataattagttaggcgtgtgtctatgagccaggcagcacctgacgagactgaatttcctcacccttaaaatggaaacaaccattcaaatgatcttcca
ctccactcttccctttctagtcatcttgatatgctcctgtgaagttcacctccttgctaaatgttgccatcctctgcctcctttcaggaacatagcagca
cacatgcaatctccta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 110148276 110148277 1002004 0 + 1104685367763 NA NA SINE Alu AluYa5/8 ttaattcctttgggtaaataccaagtagcatgatttctggatcgtatggtacgaggatgtttagttttataagaaactgtcaaactgtttttcaaagtag
ctatatcattttacattcccacccacaatgaataagagtttctgttgtgccacaccctcatgagcatttggtgttgtcagtgttctggaatccggacatt
ctaacaggtaggtagtggcatctcactgttgttttcatttgcatttccctgatgatgtatgatgtggagcatctttacatatgcttatttaccatctata
tatcttttgttggtgaggtgtccgttcaggtcttttttggagcccattttttattgggttgtttgtgttcttattgtttagtttAAGAATTCTTTGTATA
ACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGA
GACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCTTTGTATAttatggacaatttttttgttgttatttttttgattttttta
aattttatttttattatactttaagttctagggtacatgtgcacaacgtacaggtttgttacatatgtatacatatgccatgttggtgtgctgcacccat
taactcgtcatttacattaggtatatctcctaatgctatccctcccctttccccctaccccacgacaggccccggtgtgtgatgttccccttcctgtgtc
caagtgatctcattgttcagttcccacctataagtgagaacatgcagtgtttggttttttgtccttgcgatagtttgctaagactgatggtttccagctt
catccatatccctacaaaggacatgaactcatccttttttatg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 110170781 110170782 1002005 0 - 1104685367776 NA NA SINE Alu AluY tttgtcaatgtttgtcttggaagatagtcaatagatctctctaaatttccattaatcaagttttgggtaataaatggctgaataagccttatattaggta
tcactactagatccaaggcaaaagaaatctaagagctgacaatagttgtttaggtctttcttctgtcatctagttatctttaataataagtattatataa
accaagtattacagcaccatttaaaatgcagtatatgtttcctttaagttatggctcattattcatttcatgcatatctaaaacacttaaattttttagc
agtttatttcgctgtgtccagttacgatgcatatatcagctggagtttatgaagtaacagtgtgaatgattatatgtatacttttttACAAAGTACACTC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAAGTACACTCgtttctagctatgtacacagaactatattcctttcaagaaatatgagaaaattcaacccatttaaaagtatc
agcatgttgatttcaagtttagatttcttttttcagctatgagaataaatatttatcatctgttcattatgtttaacaaagaaggaaaagaaacttcaag
ctaagtttgtcagtaacctagaacaattgtatatagataaatgtgtaaatgatataaaagtattttattcctatatcatttcataaacactgcaacaaag
ttttgcacttggttcactagtaaaaccactattcaactaattatatgcacattcaggtgatctaaaagtataacagaatttttaggtatgcttagcagga
aaaaaccgattttta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TRHR:NM:003301:1/2
0 chr8 107277064 107277065 1002006 0 - 1104685367085 NA NA SINE Alu AluYb9 ctctttcaattattttaaaagatacatgttaaattactgttaactatggaactatggtaaacttttgtgctaccaaatactagatcatagtcatgtaatc
aaattgtatttttgtaccctttaaccatcccctccttcttggcccccttccctgctacccttctcagcctttggcctccatcattctactcccagagata
actttagtaaggaattggggtcgtgccaaataaataaaagacaaaatggcacaatgaagcaatttttttttatcaagatgataagcctgattggtggtga
ccttgaaagctttcatgaagattttaaagtgacacaatgttaaattagggacactagacagagaaagcaatggctcatctgtattaagttAAAAAGTGTC
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAA
AAAAAAAGTGTCtaacaggaggaaaattcaagtggacaaaaaatgaattcagaaagaagacttgaatcacataattaactttcagggactcagtctactt
tctcatctgataaaatctttcaggatgacatgctgtaaaggtcagcattctgttacttctaagtagaaaaagttcttattctctagtttcttagtaaaga
tgacttgcagttaatgcctaaattatgatttctgtgaaacattcttctaaccaggggttagtggaaatcataatgtaaataaaaataaaattaatatgac
taaataataagactaagaagaagtgagtgttcatgatgaagtctccaaggacacagagcctgtctttaagattagaaatttgtagggaaaggtgtattct
ca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 72077145 72077146 1002007 0 + 1104685424812 NA NA SINE Alu AluYb8 atgagatcagccttaaaaaggtagaatagtttgggttccacttttatcatatatatatattggaaaatatctatcagaatgtttcatatgtttaagtaca
aatgatatgatgataataaatcaaatcttccaagtctttaattgaatactggctatcatgaagtcctaagagaaattccactactgttttcaggccattg
tgataccatataaggaattggctgtcattttagtaaatgtagttaattctatcatgtcctaacaggctgggtcagtggtcaaattgttggagagattggg
gttgacgatagtctataaactacgaggaagggctcaccatatgtggtaagagttttgtttcaaataattttaatctaatttaatgttAAAATAAAAGCTA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGG
CGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAA
AAATAAATAAATAAAATAAAAAAAAATAAAAGCTAaagccgtggtaggtttttgttttttttccgaaataattccagttgtgtttatctatattattttt
cttttagtatgttctgtctctcaattaacagcatagtatattagctttctaattctgtttattgtatctttaagtaaacttaatttatataaaatagtct
aaaataaagggcaaaacacatacattcaacaggcaacttctgttttatacggtctccctttttactcttttttattgatactattgtaactacaataaaa
acacacttgcctttaaatatgccattcggtgaagcttcacaaccactacaagtcctagtgaaaatgctgaaactcatgctttgagaagtgaatgatgatc
acctaagctgtaaaaaaactca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 85599830 85599831 1002008 0 - 1104685024411 NA NA SINE Alu AluYa5 acaagtgataaaaagaaaaaatagagagctgtcaggcattggaaaaaatatctatattttgacacaaaaatggtgtataacagtcaaagaaatgttacaa
ctaaaaaacaaatgacaagggaaaatgaatttttcagtgcaaacaaactgtctgtttttaatttagaagtttggatggagctcatgtaaagtgtctatct
atgaaaactcctgtaaaataaaagataaactgtaaactactgttgctgttgttccaaagaattttctatgatggtggaaacatttgatatctatactatc
caaaaagttagtcaataaccacatgtgacttttgaacccttcaaatctggctagtatgattaagacactgtatttttaattttacttagtCCTCAATTTT
GTCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAC
CTCAATTTTccgtattttaatgaattgctctaccccgaaaggctaacagggatcttgccttctagacatataggataaaagtaaatcagaaatacatcta
gctatttatgtttcattcaaacctagagaacggctgtttttggtcctgaaaacttaggaaagatacaatagtgtagctgtatttcagaagaataaaaagt
tcaagtatctgtcatatgataactaatttaaaagattaagggttcattccggaaatatcaggctgaggtggtaaatgctctgtaaaattataaagaaatg
tgatcagaataaataaagccttttaatttctatttgagagagatttttacctttggatccatatatgatacatttattataaattaaaggcagctcaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:RALYL:NM:001100391:1/9
0 chr8 72368611 72368612 1002009 0 + 1104685424877 NA NA SINE Alu AluYa5 gtaattccatcaatgaggccagcattaccctaatactgaaatgagataaaggcattacaagatatgaaaactagaaactagaataatatttctcatgaac
ataaatgcaaagatcctcaacaaaatattagcaaactgaatccaacaatgtataaaaagaattatatgtcatgaccaagtaggattaatccaagatatat
aaggctggttcaacatttgaaaattaatgtaatccatcacatcaatgagctaatgaagaaaaaccatatgatcaaatcatcagatgcataaaaagcattt
gacaaagtccaatacccattcataataaaaaaactcagtaatctaggaaaggggagagagcttcctaaagctgacaaagaacatAAAAAACAACTTACAG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGACTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAACAACTTACAGctaacattatacttcatggcgagaaactagatgtttcctttctaagataaggaacaaagcaaagatg
tcccctctaccactcctgttcgacattgtacaagtccttactaatgcaataagaaaataaaaggtatacaaattgggaaggaagaaatataactgtcttt
tttcacaaaaaacatgattgtctatgtagaaaatattaaaaaaaaaaatcaacaaatacccacccccaaaaccaaacaactcttgaaaccaatgaagaag
gttgcaggatataacataatagataaaagtcaaatgccttcctatataccagcaatgagcagttggaatttgaaattaaaaacacaccggccgggcgcgg
tggctcacgcctgtaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:EYA1:NM:172060:7/16
0 chr8 49208047 49208048 1002010 0 - 1104685419985 NA NA SINE Alu AluY gcctggctctggtgctgcttatcctaacccgcccacatgataaacagaaccgcacacacctcgaaccagtgtcaggtcctggctttgattctgcgctatg
tttacaaaacttgtacccactgggggaaactgggggaagcactgaatctacccatacattttcacagcttcctgtgaacctataattatttcaaataaga
agtttttaaaaatttgagcagaatctagaaaatgtgaagaatgcatatactctagaactcagcaaaaatatcccagtaacaaacagtttgaaaatgtatt
ttttaaaagatacacatgaaaaaaatacaaaacaactaacactaaatttaacaaaagataaataagatttttgtgaggaaaattatAAAACTTTATTAAA
GCCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGCCCATCCTGGCTAACACGG
TGAAACCCCGTTTTTACTAAAAATACAAAAAAAAAAATTACCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCACCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACTTTATTAAAtatctttctaaagaatttaaacagagaaataagccatcatgtttgtggattaaaatactaaatataatagagat
attagttcttccccagtggatctatagattcaatgcaatttcatttgaaacccaacaagtttttttgtgaaacttgataaactgattgaaaaatgcatag
gagtaaaaagcagagaatagccaagacactcctaaaataagaataaggtgtaaggaattgactcacagatatcaaaaatcattgtgaaactacagaaagt
aggataatgtggtacttatttagagacagacaaattgacaaagagaacagaatggaggctagacctagaccagcacacgaatggaagttttctgtatgcc
caagctggtatt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 59778544 59778545 1002011 0 + 1104685422223 NA NA SINE Alu AluYb8 ttcatgaatgggattagggcccttgtaaaagaggtcccagagaactgtcttgcttcttccaccacgtgaggatacagagaataggcttctatgaatcagg
aagcaggccctcaccagacatggaatttcccagcaccttgatcttggacttcccagcctccagaattgtaaggaataaattattgttgtttataaggtac
ccagtccatggttatagaatcctgagtaggctaagataatacagacattgaaatgaaataaaacatattaaggattacagtgataaattgctctaaatta
ggaaatatgaccagaaaaccacatgaataacttaccaacaatagcaacaacaaaattagacatgtatcaaaatgagtgttttcctttCAAAGTCACAATA
AGGCAGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT
GGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAA
AAAAAAAAAACAAAGTCACAATAttggcaagttgaacacttactagaaagattttatctaaaacagtgactttgccttgtgagcatatagaatgttaggt
atattagttgtgtagcaaaatcatcttctaaagtagatttgaggaaatgtgattaataaaatagatacactgagtaatatacagttaggtacaaaataaa
actacactgttaattaatgtcttttcctatataacatgtaaatgaattttccaggcaattccaagagagaaagtttaaaaatatcttgagaaatagcagc
atttttggaataaaggaaaaaatatctgcaatccaattagaggttacaaagcatttcaacttatattttctcatctgatttccattacaagctggaagaa
tagatgaaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 22539352 22539353 1002012 0 - 1104685036758 NA NA SINE Alu AluYb9 ggtgagcattcagggtgctttggtggcttcacccacttagcaccttgttaagacagggagccccttatggacactgttgaggtagaggattcctgtcttg
gggataagccctttgtttcatcaaaatctactccctgggtctgacttagtttgggggcatttaatgctttggtaaagttaatatcctcttactccctggc
aaaactgttcattactcttacctcaaatgtacacttgatttgctgaggctttttaaaaacAAAAACAGGCCGGCCACGGTGGCTTACGCCTGTAATCCCA
GCACTTTGGGAGGCTGAGGCGGGTGGATTACTCAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCCACTAAAAATACGAAAA
AAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTG
AGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGGCCGGCC
ACGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATTACTCAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAAC
CCCGTCTCCACTAAAAATACGAAAAtagctgggcgtagtggcacatgtctgtaatcctagctctttgggaggctgaggcatgagaattgctggaacccag
gaggtggaggctgcagtgagcagagatcataccactgtactccagcctgggtgagagagcaagactctgtctcaaaaccaaattcctggtcatgtccttt
gagaggcacatctgggagtcctgctctgtgtggtagctgagctcctggaacctgacagtgagtctgccagcatcctctcaactct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:BIN3:NM:018688:6/9
0 chr8 22835915 22835916 1002013 0 + 1104685036839 GGGTCTTGTCTCTGTCCCTCT GAGATCAGGAGATCCCCAAAC SINE Alu AluYb8 attgttatttgatgaggtgggcacagagccacagagagtgccctgaaggacagggcacatgccagggaaccagggatttgggtcttgtctctgtccctct
cttcacgcccatagggcactgccaggccagcgtttgaacatagcgtattgccccacctaggatgatgggaaaggggcatgtgcaggcctctgccctgctc
agctgctttagcaaagtcttggagaaggacacggagacaaatttatttgatctgcagatggcacagagctggtaaccaacaattctgatgatcaaattga
cttacgagacgacctggacaaacctgaggtgagctgaatcaaaaattaaagttactgagaaaatacactttaaattttgcattAAGACTAGGCACGGTGG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAACAAAAACAAAAAAACAAAAAAAACAAAAGACTAGGCACGGTGGctcatgcctataatctcagctctttgggaggctggggtgggagcatcac
ttgagcccaggaatctgagaccagcctaggcaacatagtgagaccctgtttctaccaaaaattaaaaaaacaaacaaacaaacaaaaaacaaccatggta
gtgcctgcctgtgttcccagctacttgggaggatcacttgagcccaggaggtagaagctgcagtgagccatgattgcatcaccgcactccagcctgggtg
acagagcaagaccctatctcaaaaacaacttgcattcaagccagaaaacctcaaaggtgccaccttcctgtgtgcccttgctgcttgtggtttacctgac
atggaattcattctaatttccatgtggagagttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1072 720 NA intron:PEBP4:NM:144962:2/7
0 chr8 23098363 23098364 1002014 0 + 1104685036929 NA NA SINE Alu AluY gaggctaccatgttacccagagcctaaaaaaaaaaaaaaaaaaagaatattttattcctggtttacgaattaatgtctttaagtccaccaatcccactgt
atattttgtgcaattaagaaattcactttaggcatgtgaccagtaagtactttattgctagtactatctctgcaaaagagcagtacagtgtgaaacaaag
caatgcaagcgtgggtgtgaaatgtggccccttgttaaataggacttcatgatgaactatattaaagaagaattggcaaactgccagtgtatttctttac
aatacttcttactttaccttcatcaagactaagcgctttaaccacgagcaatgtcaattagccaaacctttcaattttctatcagatttAAAGAATATTT
TGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCAGGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAATATTTtacaatgtacttgcatggatcattgatgacatactaggactttctattttgtcctaaatttttttctg
tcttgttttaataatcattcaatttatattagaacatattcatatattcatcatacaagactttttctcatacaaagttattctcttttctttctaacct
tcattaccaaaaatatatcttcaccataatttttttcttttccttttttttttttttttttgttagaaatgagctttttggcaggtcacccaggctgatc
ttgaactcctaaggtcaagcgatccacttgcttcagcctcccacagtgagccaccacgcctcccataaatccataacttacttcacatctctctccccta
cttactggttcctttctacct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 35188580 35188581 1002015 0 + 1104685194302 NA NA SINE Alu AluYa5 gtgagaataaattcttgcacacaccaagctaaaagacaagcgtttgattagcagtgacaaaaataatatacagattttccttgtagccatgccttaaatt
gaatgccaacttctttctaatttagtgaaatcattgttgtcacatgtcacttagtaaggagttaatagaaatgtttataaataatatggtttttacaaat
ctaaagcagattttagtttctgtgtcctcaattcatttgttctaaagttgacttaatattcagaaatttctctgttaccatgtatttccttatgatcatg
atcattatcaaaattatcatcatcacatttttacagataatacaaccatctcatgatcacacaggaaaagagaggacatgtctgcGGGAGTTACTCTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGGGAGTT
ACTCTTTTttacagcaatggaatcaggacacttatcactaaaagaatgaccatttatccaatgactaagataatttacccaataaaacagcttcaaactt
tattttattttacttttgaggagcaattaattaatgttatttacataaaaagaaataaaatactattttacaaatgagttctagtcaaagctcaaattat
gcatcagacatattatttattattttgcatagggtgatcacttccacagtccaggattctttgtcagcgaacttttgtgataggatctgtcctgtgaata
ttcatactttttaaatagctaaataattggctacatcaaagcctgaagtacccctttgccctcttaggaaagatgatagttgcttcttaggcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 24835019 24835020 1002016 0 + 1104685037370 NA NA SINE Alu AluYd8 tcaattgcctggttgattaattaattcaataaatgtttattgaggactagagcttggagatacaatggtcttctcttataaaattacttactttgttgtc
actgccagccatcacactattattgaaagagaaagcaatttgaaattcatgtgtccaaatatgttcagtgacagggagaaactacatttaaactaagcac
aaatctccacgtgtttaggatataagagtacctttcctctgatgacaattggtctctgggcacaatgacatcaagccattgaaaaacagaatttctacct
tgccagtagactgtcttggagacactattttattttaaatattgtgaggattatcaaagttcatttattctcaatcttaaaacataAAGAACAGATTTTT
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGT
CTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGTGGGCGCCCTGTAGTCCCAGCTACTGGGGAGGTTGAGGCAGGAGAATGGCGTGAACCCGGAA
GGGGGAGCTTCCAGTGAGGGGAAATCGCCCCACACCACTCCCGCCTGGGGGACAGAAGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAACAGATTTTTtttaagaaaaacttcctctgggtcacacactagtagatgacagaactgggatttaactcataggaaaggtccagagtat
gtactcttttttatttatttattttattttttattttattttatttttttttgacaggctctcactctgtcacccagactggagttcagtggcatgatca
tggttcactgcagcctggagcatctgggctcaggtgatcctcccacctcagcctcctgagtagctgagactacaggcacatgccaccctgcccagctaac
tatttttgtggggtttttttgtagagataagtttcgtgatgtttcccaggctggtctcaaacccctggactcaggcaatctgcccatttcagcctcccga
agtgctg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 28185390 28185391 1002017 0 + 1104685684309 NA NA SINE Alu AluYa5 ccttaacagaataagtggacaaaaacaaaacaaaacaaaaaggattagtaataaaacctaggaaaaacaaacaacagaaatgtaaacatttgttttttga
aattaaggggaaaatactctattaagtaacttttagaacaaaatataagtcaaagcagaattacagactatttagacagtaacagtggacacctacatgt
tggaatgtataggaacaagctacaatatatttgacaggaaaaggcataaaatgtgatagttattaattagacctacctgaaatagtcatggggattaggt
cctctctaccctcatttatattttgccatctcactatgttatggaactcataaaaaaaattcaagaaagttgcctttaaataacTGTCGCTCACCATCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATGT
CGCTCACCATCTTaaagcgaaatagaaaaatgtataattatatgaaagataaggaatgataataaaaaatagaaacatgggatatggagaggcacttaaa
agatgctttttcactctgataaacaagaatttggtaaaaataaatatcataattataataataattaaataaatattaaaagattgatttttttcacaac
cctatataaacaaatttgggaacttggatgaaacagatgattttctaagaaaataatattaccagaacagataaattatagccagaaaagatctgaaaaa
cttccatcaacaaacatctccccattccaataaataagtaaatctcttatttattcatacatagtttatagcaaagatgcttttatgaaaagaatta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:LINGO2:NM:152570:5/7
0 chr9 34105521 34105522 1002018 0 + 1104685682496 NA NA SINE Alu AluY aagacaggtgggcaacctaagtctgtggagaggttgggaaaggaaagacaagtgaaatcaaagcagaagaatctattcactatcccaatctgagaaagtg
gggaggagcaaaggagagagccaagaccaagaaacacaacagaaaatggacagacaatatgtatcaaacattaaaaatatgtatagcggctaggcgcggt
ggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggccaacatggtgaaaccctgtct
ctactaaaaatacaaaaaattagccgggcgGGTTCAAGTAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCAGGCCACCATGCCCAGC
GTGGTCAGATCAGTGAGCCGAGATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCAGTGGTGGGCGCCTGTAG
TCCCAGCTACTCATAGACATATATATATAGCTTGTAATACCAATTTTAGGAACTTACACTGAGGCAGAGCTTGCAGTGAGCTGAGATCACACCACTGTAT
TCCAGCCTGGGCCACAGAATGAGACGCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGGTTCAAGTAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG
GACTACAGGTGCAGGCCACCATGCCCAGCggtaggcggaggttgcagtgagccgagatagcgccaccgcactccagcctggcgacagagcaagacttcgt
ctcaaaaaaaaaaaagtatatatatacacatagcaggaccctatagtctctgcagtctccccatagacatatatatatagcttgtaataccaattttagg
aacttacactgaggaactagtgatgggtgaacagtttgaactactgtacatcttttttaattatagagacagggtgccactttgttgcccatgttgtaat
aaaacccacctgggctcaggcaatcctcccgccttagtctcccaaagtgcgggattaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:WDR40A:NM:015397:2/9
0 chr9 38757775 38757776 1002019 0 + 1104685502590 NA NA SINE Alu AluY agttaggacaatcaatagatgtagatatgtagtataatgccagaccgtggtaagtgctgtgagggaagctgaagctggtagtgagatggagagtagctgt
tgaggacggttgtcagagaagatttctcagaaggactagtattttttggtgaagaagttatcctcctcttctctctgagaaaaacccatgcactcccacg
tgaacctcttcaagcgggctctcgtgttgctctggcgcagccctcttgtgctttcagtgctcccttgatttctgacataacaaggtaactgttcaccgac
tacttctattgcccagacccggaattaaccatttcctcaaggactggcattattattattaatgcggtataacttacacagagtatTAGTGTACTTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTTCTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AATAGTGTACTTTCTTtcttacatgtacaattcaatgaacttttacatacttatacagcatacaaccacttctcatataaagatatacaacatttctagc
acctagaaagttccccaggggcccattgcatgtattacctcctcccccatgctgtatgcagtggtaattacaatactctccagatctgtgttatttttct
caacgttatgcctttgagagtcattcatattcttttgaatggcagtgatccattatttttcattgctatatagtattccattcaagttttgatttgggtt
gtttgcagttttggtctcctgtgaataaaactactataacaatttttaaactgagtttactgtcataatgatgacaccaagccaattggggtttccctac
tg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 74421366 74421367 1002020 0 + 1104685331008 NA NA SINE Alu AluYa5 aagctcaaactgtgacagggtcagggacaggtaaaattcacaaagttggtttacagcagaactgtgctacaattatctggattcagatccaagtcccctc
caaatgaatcacaaccacttctacctttataattccaggccatgaaagatcactgttttagtctgcgtggtgcagtggaacagatagacctcggtttgaa
tctcagctctactgtttactagacgtgaaatggggaaatctaaaatgagtaagtatacacagaaacacacattacatacatatatgtaatgttcaggatc
attacactgaactttagggcttagtactaatgtacaatcaaggttgtgttagtactgagcagtatatcttttattgttgaagtccaaAAGAACAGAGCAG
GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGT
GAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAGAACAGAGCAGatatcaacctaatttgtaagtgatgcattttcctaaactaaatgcccaataatggaatgggctagaatattgcaggacagggctg
tgaatggaggaaagcagttggaaaatcaatccttttaagggcacaaaaggatgaatgaaccacattcccaagaacctgctcccacccactgctgttccca
cccccgctgtagttggtagcatgttcacaaggaaggagctggctagctttcatgggagccacatcatccatcaaaacacattagtgttgttgatttgaat
gttgtttcctttgtaggtctgcttgctttgactttgtaaaattgtttagtcttgccattattatataaggactataatcataaggcatttatatttcatt
tt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:TMC1:NM:138691:3/24
0 chr9 10451264 10451265 1002021 0 + 1104685688749 NA NA SINE Alu AluY ggctacaaaagcaaacataaataaaagaaacggcatcaaataaaaagtttcttctcagcaaaagaaaaaatcaacaaaatgagaaggtaatcaacagact
gggaaaaaacatattttcaaaccatataacaaataaggggttaatatccaagatttacacataattcatacaacttaatatagtaagaaatatataacct
gattaaaaactggacaaaagactcgaatagacatttctccaaagatgacataaaaatgtctaacaaggacatgaaaaagtgctcaacaccactaattcca
caggaaatacaattcaaaactctatatatcctcataactgttaggataactattataaaaaagataagagataacaggtgttggtTTTTCCCCCATTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AATTTTCCCCCATTCTTaggaaactcttgtactgtgttggtgcaggcattatgggaaacagtgtcagatttctaatgaaattaaaaatagaactaccatt
ctaagaaaataaaatcaccacctcataaagatatctgcaatcctatgttcattgtagctttattcacaatagtcgagctatgaaaataatctaggtgcct
atcaatgaaaaaatggatgaagaaactatcatagtttatgaacattattcagccttttgcaaaggagatcctgtcacttgtcacaatatgaatggaccta
gaggatactatgctggatcaaataagccagacacagaaaaaaacatgttgcatgatcttccttgcatgacattctttttttttttttttttttaagatgg
ag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PTPRD:NM:130392:1/44
0 chr9 21251950 21251951 1002022 0 + 1104685685766 NA NA SINE Alu AluY aatattattcagctttttacaatggagtattatttttcataatattattcagtaaaatgtggtatatacatataatgaaatgttattcaatcttattctg
acacatgctgcaacatggatgaaccttgagtacattatgctaagtgaaataagccagtcacaaaatagcaaatactgtatgattgcacctatatgaagta
tctagagtagtcaaattcataaaaacagatagtagaatagtggttgccagaggcttagggatggcaggagctggaaggagtggagagatgttatttaagg
agcatagaatttcagttttgcaagatggaaaagtctggagattagttccataatgctgtgaatgcagttaatactactgaactgtataccACCATTTTTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAACCATTTTTTaaggtggtaaattttctgctaactgtactttatcttaattttaaaaataggtaacaagggcaacattattccttggaaaacaa
tgctaaaatataacttagctaaattcagcccagccaagcagtgattaaaggatgaggtagaggggaatcaacattggagaagggatgtagaccaaaagca
gcagatgggcatgggctcgaggaaaagtcatcattcctggtctaggggttggctttcagatttgattattctaggcttcagagttaagaaggacataacc
aagtcacaagagtttatatacagaaaggtaaatttttgaaagtacagtattctctgtggataataggtaagtgttaattgcactaagttctttcctagtg
gattaat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 28950620 28950621 1002023 0 + 1104685684051 NA NA SINE Alu AluY agcaaataattagaacacctataatcacagcattttgaaaggccaaggcacgaagattgcttgaagcctggtgttcaagaccagcctgagcaacacagca
agattctgtctctacaaaacacaaaagaattagccaagcatggcagtgggcacctgcagttccagctactgaggaggctgaggcaggagaatcactggaa
cctaggagtttgaggttacagtgagctatgatggagtcatatgatggagccagcctagatgacagggtacgaccttttctctaaaacgaacaaacagaaa
atgtctctgtgtgttgtgtgttatagaaaaaagttacggaagtgtcctaaaatgttattatctgtgctcatttgtgagtgatCAATTATACATATTTCTT
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGT
GAAACCCCGTCTCTACTAAAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAACAATTATACATATTTCTTcactttaaagtattctgatattatttaatttttttgtgtgggcacatatttcatttatatgtgggaaaattatttct
aaaaataaataggcagatgtaacttgtaaataggttacaaaaaccacttctatgatcagtatgccaaaaatatgtttatataaaataatggttgctgagt
catcagaacagtccatattctagaaaatgttgaaaaaatcaagtaaatttattaattcatttgttcatttattcattcactcaagacacctttatttaaa
ttttaacaaaatattgaattatttaatattcactacatatgaatcactactaatcacaaggtctacaggaatggaggaagcaccatagctgtctttaaaa
tgacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 26466374 26466375 1002024 0 - 1104685684735 NA NA SINE Alu AluYb9 ctatttgtggaagattgtattttagaacagtatgcaaagagtattctcttgcttgtgggttttgtcagtagatattaaaaaaggatgtcaacttttctgg
aattcaatggtttctaccgcacgatctgctagacttggagaaatttaacttctttattttagtaagttctgaagttttgaaatttttagtatagacaaca
atccaaataggaatctaaattattgatttttccaaacacagaaggatgggctaatgatgacagagaaccttttaaacctatgatttcttgcttattcatg
atattatactttctctttcttggttccatctttcacattaaatacccaattttaaattccattgtctaattgatttaatgatTATAAGGAACATTTTCTT
AAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAATATAAGGAACATTTTCTTttcagcctaaatttttcttcctaatttattcccattactcttggttaaatcttgaataactaggattgatgaggc
actgagagctaattaattgattgctaaagcactgtggtattatgcaactccacagtgaattctcttagttttaggaaaccttttaacagtaaactgcatt
ataaggctgtttttttcttatttctaggtgtttttcacaggccagttatgtttaagattttccccaaagatgccacatgcaggcataaactaataaaagg
ctcaatttttacttagacatgttcactttgtcttttgtttattgtatttgtggaaaaggctttcaaaagtaagtgaccctgagggaaccggttaaaactt
acggata Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 2316306 2316307 1002025 0 - 1104685690677 NA NA SINE Alu AluY tcagattagaaaagaaggatatggctaacgtcacacctctagcgagggagatggaattgggacccaagggccttgactcctaatctagtgctctttccta
ataccacatggatgtatgaacataatagtagcaacatttgttgagtgcttacatatgctagggattatcttaagtgcttcatatgaattaatctgcctaa
ttttcacaacagccctgtgaggtggatgcttacttttattgttctcattttaaagctgagacaattgaagtacagagaagttaagtaacttgtcaaaggt
cacatggctagaaaaatatggagctagaatttgaaaccattccgtttgtgcttttctgtcattatcatcatcaccatctcatgctttCTTGAGGTTTCTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACTTGAGGTTTCTTaaaaattcctccctgggtttaacctcttttccattaaaataaataaataaataggccgggcgcagtggctc
acgcctgtaatcccagcactttgggaggccaaggcgggtggatcacaaggtcaggtgacagagaccatcctggctaacactgtgaaaccccgtctctact
aaaaatgcaaaaaattagccgggtgtggtggcgagcacctgtagtcccagctactcgggaggccgaggcaggagaatggcatgaacccaggaggcagagc
ttgcagtgagcagagattgtgccactgcgctccagcctgggtgacagagcgagactctgtctcaaaaataaataaataaataaataaaatattgaggttt
tctaaaaggctactta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 122224468 122224469 1002026 0 + 1104685370289 NA NA SINE Alu AluYb8 atggagatggaggctatcatcctcagcaaactaatgcgggaacagaaaaccaaataccacatattcttacttataagtgcaagctaaataatgagaactt
atgaatgcaaagaaggaaacaacaaatactggggtctaatggaaggtagaggataggagaaaggagaggaacagaaaagataactattgggtactgggat
taatacctggatgacaaaattatctgtataacaaacccccatgacatgaatttacctatgcaacaaaccttcacatgtactcccaaacctaaatttaaaa
cattaaaaaaattaagtgtatactagagaaatctataaactgctaaagattaaactcaattataaaatttccggaaaggttttcacttgtAAAAAAAATT
TGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAATTatttatgacacttgttaaaggtggtaaggcagattttattcaaagggtgtaatggccatagatgtaggaacttctacaaaagt
gtcttgcaatgggagagacagattgggctcatttctgactccaacaagaacaagtggagattggtaaccaagttgcagggtggaggtcaatggtaagaaa
atttctaaaatgaaacatcaagtgcaagtggtttgtggctaaacttacttgatgcgattattgcaacatcaggtttctgttacactccataaagaatgtt
ctaaaccaaaccccactcccaagctagattacatgattccatgaaactgtttttccccttctatctagtattcaattaaatatcttttataatttatttt
tcaatgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 117116197 117116198 1002027 0 + 1104685369132 NA NA SINE Alu AluYg6 tatactaattgctggtaagaatgtgaaacaataggttctctcattctgtgccgttgggaatgcaaaatggtacacccactttggaagacaggcaatttcc
tacaaagctgaatatagttttaccatacaatttagcaattacaatcttaggtatttacccaactgatttgaaagacttatattcacacaaaaacttacac
ataaatgtttagagcaactttatttataatctccaaaaaccgggtaaccaagatgttctgactaggtgaatgaataaacaaatatcctgacagtgaaata
ttattccatgacaaaaaaaaggaatatgctgtcaagccaccgaaaactatggatacattctgtattagctgttctcatgctactaaAAAGACATAACCAA
ATTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCC
GGGCATGGTGGCGCGCGCCTGTAGTCCCAGCTACATGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGTCGAGATCGC
GCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGACATAACCAAgcctgggtaatttataaaggaaa
gaggtttaattgactcatagcttcacatggctgagaaggtcttacaatcatggcagaaggcaaaggaggagcaaagtcacatattacatggcagcaggca
ggcgagagagattatgcaggggaacctctatttataaaaccatcagatctcatgagacatactcactaccatgacacagtatggggaaaactgcccccat
gattcaattatctccacttggccccacccttgacatgtggggttattacagttcaaggtgggatttgggtggggacacagccaaaccatattacatttta
aatgcatattgagaagtaaaaaaaaccagtctgaaaagggtacatactgtataagcccatagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 129777217 129777218 1002028 0 + 1104685372199 NA NA SINE Alu AluYa5 caccatctcagtaaggaaataaggggtaccttattgctgccagccagaggtaaaagtcaagctttccacatggtctacaggtaaagggtggccttgttat
tgtcttgcttgaataaaagtccaatttctctacttgactttcttgacaccaccccagcaggggtattgaggcattttgttacatctttatgaggctcacc
cctcagcctttgctaagtctaggctcaccactcagcctttgcttgcatgacttggaataaggctaggtcatctgcagtattgtgcttgagtagggttgtt
attgtctaaaagttttctgtctcactaactggcccctttcctcatccttggctagagagatcaggcttttattgaagctcttAAAAAAAAAATCTGTGCC
CGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGA
AACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAA
CCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATCTGTGCCcattggtatttctagtttgatggcttctctagtcctaagtgtggtatatattaggcaaaaacaaaacctag
ctaacttaccaccttgtcattcctcaggatctgaggtttctagctggtctgctcagagtcttcttatgcttgctttatgtacaatatccagagttttaat
tttacttagcacaagtaatagagaaaaagtatttccattcaattttcctgaaaatgaaagtccactgacactgtagatttctaagagcctgaagagttaa
tagaacatacaagtttttttagttagcaaaatattggagataaccttctgcttcatatgtacagatgttccctaggccacacacaaatttgaaaaacaat
ctaatcttcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 128019997 128019998 1002029 0 + 1104685437769 NA NA SINE Alu AluY aattgccttagccaggttcttcctgggacttttattgtctccccagatactgaatattcaactcctctctcccgactggagctcggggtgcagtgtgctg
tgtgcagccccagcctcctccagggaaggggagaaggctgagcagggaaggaggcctcaatttgaggtgtatgggtaatgaggctgagggtcagggctct
ggacttgcaaccccagctgcttcctccctggctcacccctggttcagggatgacacccagcttccttctttggtgcaaactctagtactgcaagagtctg
ttaaacctgggtgttcgcctgcatccatgcaaccagcaccaccaaaaaggccaccacctcctttgccctattgacagccttgctAAGAATCTCTCACCTT
TGCGGTGGCGGGCTCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCC
ACTGCACTCCAGCCTGGGCGACAGAGCCAGACGCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAATCTCTCACCTTaacccgtgcatttttacaaac
tgctgcagccagatcagtttaggctgtgaccgtggcgggcagttctggtctctgtgggggcatcccgggtagacaccctcccatctcatgcagcctcctc
tatttggtgcagtgtggcccagccctggccatgccccgtgggagtgcaagaggaagcaaggaagcaggaagcattgttctagatgtcttcaatgaagacg
caggaaacaaagttagattgcagtgagtgaagggtgcagtggagagccagactcactgtcaagggagtagatctctaagcctagccttgctttttggtgc
tttctgtgcacctcttgtctgaaaaggtgtcactttgggggaaatgagctcaggggcagcacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 117549574 117549575 1002030 0 - 1104685429625 NA NA SINE Alu AluY ctgaggtcataaatcaaattagtaatatgaccaggattagaactcaatctgttctccccaaaggttgaattttttccaatccataaatgggcacatgaaa
agaacaaaccagatcactgaacttacccttctcagatgcataagtctgaattatcttctagtatatagatatggaaatccttgggaaatctgagccagtt
ttgatttcttttttgagatccatctctgaggattgaaaaattaaatgttttaggcattggaaatctcagtgctatagatggaattgtgtgccctccccag
cccttcccaccctatcaaatgttgaagccctaactttcagtgtgactgtatctggggatagggtctttaggaggtaatCCCTATGGCCTCATTTAACCTT
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCGAAAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAACCCTATGGCCTCATTTAACCTTtgaaaccctaatccaacaagaaagtagcctctgagaagagaaacagatctttctccctctgc
tatgggaagacatagtcagaaggtgttcatctgcaagccaggaagagagttcttgcctaaacatgaccatgctggcactctgatcttagacttccagcct
ccagaactgtaagaaagtaaattttcaatggtttaaatctcccagtctatagtactttttatgacagcccaagctgacaaatacatccatttgcaatgag
ggtacattttaaatctttaacaaatacaatctgtagttggcttcttagaacttggggaacaggacattagtttgtaaagttattgtttttccattaagtg
ctctacaattcaactg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 122095003 122095004 1002031 0 - 1104685100250 NA NA SINE Alu AluY atatttttgccatagtttacttatttcacttgagaattagttaattcaacaaacatttattgagcatctgctatgagcagtgtccttttgactcagtctt
acagatttctgccagagaattttacctctattctgtgatactacttccccaggggcaaacaggtgccagactcccccaggggcaaacaggaaacaggtat
caggtgctcgacaggggatgatttaagagtctggcaatgtagctgtaagaatgtggatctttgattcagaaacaagggaaacaagaactccagattctcc
aagtttatgaacaaaagataaactaatcatgagcaaatagcaaaactaagtaagcataatacaaaattaataagacataccttttagaaTCCTTTACTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAATCCTTTACTTTattaataataaactactatttactactgagaattcaaccctcctaaaccctgtttggtgattgcataatgttagtttatatt
attgcttaagagggggctgaggttgctaaaatgagattctcttcagtttatgctaccttcattcctactgatgttttttgagactctcttggcttaaaat
agagggatagttcttaaataaaaaatggtctgtctcttctagggataaatttttctttgcttcaattcctctttactttcagagccatgttaatactact
ttaaactgacttactgctctttttttttgaaacagggtgcgactctgtcacccaagctggagtgcagtagtaccattatggttcactaaaacctttgcct
cctgggc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 78772992 78772993 1002032 0 + 1104685332218 NA NA SINE Alu AluYa5 aattgtaccaggaatgtgtacatctgtgcatattgtgggagggagagtccacagcttttataagattattagagtaattctctgccagtcatcagggtga
tcacacatcttttgcttttctctcttcctggcccataagcagatggcactgtcccacctctagaagcaaatacatccatgtgacttggggcactgaaatg
tgagagtgactttgggcacttttggacagaaaccttaagagacaaagcttaccacatttcatttccctctggtatcatggttggcaatggtcaaaatggc
agcaactccattagctcaggcccctgagggtctgcaaatcggccggtccctcctgccaatccaaaatggacatgtagtgtgagAAAAAAAAAAGCTTTGA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGCTTTGAtgttttattccaaggagatcatacggctatttgttcctacagcacaccctcatttgtcatcgccgatacacatctttaac
ccctcaaaagttaaagatcactttaaccctaatgaatgaagtcctaacagaagacgaattccaggaagaatttcttcttctcttcataccgatgagagcc
atatactatattgaattctgccttagtattccaattacctctgagtaacatttctccctatggtagcatatgacacattgctcttttttccttcgtaagt
cacacacaatcactcatgaaggaaaaaattgtgcacgtaagtgccagaagctcctaggagaaggaagcatgatcatgaacagcttacagaggggaagaat
tcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr9 94322168 94322169 1002033 0 - 1104685126714 NA NA SINE Alu AluYa5 ttttaattatagctgttcttgtatgaagtggtatctcattgtgcttttgatttgcatttccctaacaactaatgatgttaaacatctttttatgtgcatg
ttgtctatctgcatatcttccttggagaaatatctattcaacccctatgcctatttctttctttttttaagagatggggtcttgctctgctgtccaggct
ggaatacggtggtacaatcatagctcactgcagtcttgaactcctgggcttcagtgatcctctgcctcagcctcccaagtagctgggactacaagaatgc
accaccacacctggctaactttttaactttttctgtagagacagcatcccattatgttgtccaagccgttctcaaattcctggcctcAAGAAATCTTCCC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGGGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAAATCTTCCCccctggcctcccaaagtgctggaattacaagcgagagccactgtattgggcaagttttgcccatttttttattgc
attgcctttctgtagttgagttgtaagagttctttatgaatattctggatatcaggaccttatcagatatatgatttcacatattctctcccattgtgta
caccatcctttcactttcttaacaatgtcctttgatgcaacaaatttttaattttgataaagtctaatttatcttttactttaggtgtcacatctaagaa
tccactgccaaatatgaggtcataaagattttcccctatggatttttctaagagtgttgtagtcttagctcttatatttacagcaaaggtctaaatataa
gatatattaggt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ECM2:NM:001393:2/10
0 chr9 102402461 102402462 1002034 0 + 1104685433398 GGCAGAACCTGAGCTCCTACT CCAATTGTAAACTCTCCACCTTC SINE Alu AluYa5 aagcaggcaacactttcatggaacaaaagagcttactcaactcttagaaaccacgactacccctacattcagatttgtcgaaatcctggttccaccaacc
agcagaactcaattctaagcgattctttctcagcacacttcctatgtgtgccattatattgagagagctgaattcagaggagtatcaggagagggaaact
gttcttttcccactgaccatctcaggcatattcttacaacttctttcgtcactctcagataataaaaattcttctagttacttttagacccaaagtaatc
ttatttgagttatgaaaattccagtccaatatcaaaatcatataacaactttctctatccaattgtaaactctccaccttcagtgaagtcttTTTTTTTT
CCATGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCT
AAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATTTTTTTTaaacccatgccaaagggtttatttaaaaagcaatcgtcagtagtcatttgccctacttctgtctccagccacgg
ttccactgcctagaggaagccattctaaacgcttatttttgtgtttagtaaattatagttgttgataaatttacgttaaccctggcttctcagtaggagc
tcaggttctgccacttggcgatttaatgtttgggagacgtgagagatgactcagagacatgctgtgacatttcatctcctcacctggactcccctccacc
cattttcttgagatagcaggtagctcgaaggcctgtatgaagccccaaaaggccaggattgctggctgtcagccaaaaggccttatcacaagccatgctc
gctgttgtctagtaattt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 554 229 NA intergenic
0 chr9 103263712 103263713 1002035 0 - 1104685433195 NA NA SINE Alu AluYa5 cagacaagagtccctgaccccatagagcttacattctagcaagaaaacaaatgtttaaaaagtatacagataaaacacaatatgggtgtttcatattgtg
gctcatataggcatggtggctcatgcctataatcccagcactttggaaggccgaggcaggtgaatcacctaaggtcaggagttcgagaccagcctgtcca
acatggtgaaaccccgtctctactaaaagtacaaaaattagccaggcatggtggtgcgcacctgtaatcccagctgcttaggaggctgaggcacgagaat
cacttgaacccaggaggtggaggttgcagtgagccgagatcgtgccattgctctccagcctgggcgacagagtgagactccatctcaaacaaaacNNNNN
CAAAAAACACAATAGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCAGGTCAGGAGATCGAGACC
ATCCCGGCTAAAATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGACGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA
GGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA
AAAAAAAAAAAAAAAAAAACAAAAAAAAACAANNNNNacacaatagcatttcagattgtgataagtgctataaagaaaagcaaagctgcttaaggatgta
gaagttgtgtgggttatttctgataaggtgttataaagacttctctgaaatgacatttaggtagggatatgaatgatatgaatgagtgaactatgtaaaa
atctggagtgtagcattccaggcagaaagcacagcgagtagcataagttcctgaggaggacatagcttggcctgtttaaggagcaataaggtcagtatgg
ctggggtacaaagagaaagagggagtggtcagagatgaagtgggagaaggaagctcttttaggtcacagttaggagctggcattttattctcagtgtgat
gggaagctactggagaggtgataagtttctga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 45203828 45203829 1002036 0 - 1104685518718 NA NA SINE Alu AluYa5 aaagcagaattctaccaggtgttcaaagaaaagctagtaccaatactcctgaaaatattccaaaaaatgaaggaggaattcctccctaactcattctata
aaaccagtatcatcctcataccaaaatctgtcaaagacataatgaaaaaagaaaatgataggccaatattcctgacgaacatagacacaaaaatccttga
taaaatactagcaatcaaaatccagcagcacattctaaaagttaattcaccacagtcaagtaggcttcattcctggtgatgcaaggatggttcaacatat
gaaatcaataaacatgattcaccatataaactgaatttaaaaaaataacatatgatcttctcaatagatgcagaaaaagcttttgatAAAATCCAACATT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAATCCAACATTcttcatgataaaaaccctcaacaaactagccatcaaaggaacatacctcaaaacaataagagccatctatgacaaaccc
acagccaacatcatactgaaaggacaaaaccttgaaatatcttcactaagaactgaaacaagacaaggatgtccagtctcaccaccgctattcaacatag
tactgaaattcctagccagagcaataaggcaagagaaagaaataaaagacattcaaataggaaaagagaaagtcaatttaccctttttgctgatgaaatg
attctatacttagaaaaccctacagactccatcgaaagggtcctggcactgataaatgacttcagtaaggtttcagggtacaaaatcaatgtacaaaaac
cagcagca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 34152375 34152376 1002037 0 + 1104685752389 NA NA SINE Alu AluY atatctttggcactagcttccagtggattccctggagctaactgtgtaaacaactgctgtctctgaccttttgttgcaagcatttacaaaagtagtacat
tttaaacatatgttgaatataaggctttatgttctgcaatgggtatgtagcagtaaatgaggcagatataatctgggagtcaaatgttattaaactctag
cagctctgcaaggtactttataacatgagagacacacccagccacccacccctattccccaaacacagaaatatagttggtaaaaaaaatgcaaaacagc
aaagtgtcagttcaattggtgagcataaattcattaccacaggcaagtaatttcatggctatttgaaacacaagaaataactctagaagAAAGAAATATG
GGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTGATGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAATATGagtgatggagagttgtacctagagaagctctcagcctggaataatacattttacacaacccacagaaaaatgcaaatagaaag
atgttgttggatatgctcaagcggaatggtgaaataaaaccgggcagaaaaaaaagacaatcttagtcacttaatactaagtgttttgccagtacactgg
tgaaatatacaaatagttaacaacagaagtgctgaacttcatatgaccattaagattattctttgatatttatacataatttttcaagcctaataccttt
aattctatagaaaatcccctttcctccccagatttatgcaaacagcatagaatctttattctcatggtaaattcttgttcctcctactttccaccaacaa
acttta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 145705457 145705458 1002038 0 - 1104685543789 NA NA SINE Alu AluYb8 aattagagacctaatttcttacctaaagaatatagaaaggaagagaaaaataaacccaaagcaaacagaaggaagtaaatcataacgataaaaacaaaaa
tcaatgaaattaaaagcaggaataaaataggaaaatcaattaaacagaaagctatttctttaaaaccgtcaacaaaattgataaaacttaagcacaactg
acagcttaaaaaaaagaagacaacaaataaacaatatcagggacgaaaaaggacatagcattacagatttttcaggcattaaatggataagagaatactg
tgaacaaccgtatgctcataaattcaaaaatatagaaaaaattgatcaattcgttagaaaaacacaaactaccaaaaataaatttAATAAAATTATATAG
TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTA
CTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGA
GCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAATAAAATTATATAGtgatataattagtcctgcaactaacaaaaagaatgaatttgtaatttaataagtctcttgtctgtcacc
atgtgagatgtgcctttcaacttgcgccataattgtgaggcacccagccatgtggaactgtaagcttattaaaccgctttattttctaaatttctcagtc
ttgggggtgtcttcatgagcagcatgaaaatggaccaatacagtaaattggtaccaaaaacaccctgatttttcagttccaacctttagagctgtgataa
ataaatgtctattgtttaagctacccagtctataggattcttttatagcagcctgaaatgactaaaacaattatatatgtctattacctagaaattctgt
tcctgaacatacacct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 149201983 149201984 1002039 0 + 1104685361673 NA NA SINE Alu AluYa5 ccataaggtagagagaagaaggaagactgtctagagaacttgatacttgaggaatgacatggcagagagttttctgagttttcttatttcctttcatata
tcccatacatgacactacagatactttcaaaatggaatagtcaacaggcacaaatttttataaggcaagcaagaaaacaaacacaatacaaaaaaaaatt
ttctttctctatccaaaggattaggaagaaaatgacctagcaaaacagaaactttttttatatgatccacccttctctaactaaacaacaaaggaaaaac
ttccttccccccatcctacaatgtcagcaaggtcaggtggggagctgaatttttgtccccatcatgatagcaagaaggtggaacaGATAGCGAGAGGTTG
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGATAGCGAGAGGTTGtgctagttgccactccactgatcctgataagatagtgtcagcagagcct
agccacccccacctgttggcagcaagccaatgcaaggtggtgcaatttagcaatctgcctttgcaggggtggtaatagcagggtattagtggggagcaga
acatctaccactacctgaacctgcatactatacctcaacagggtgaactgcctacataaacgcagattaaataggatacaaaatctcaacatgatacccc
aaatgtccaggatatgttcaaaaatcacttgtcatgcttagaaccaggaaaatcacaacttgaatgagaaaagacaataattgtcaacacctagatgaca
gaggtgttagaattatctgatgaggattttatagca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 126118374 126118375 1002040 0 - 1104685473402 NA NA SINE Alu AluY tcctggagcagcttgcattcagcttccagaggcagaatgggaaatatggatgctccactcccgatgaatgagatctatgttctgattgctgattgctgct
tctgattgcagaggtgcagacacagagatgagcagccattattgtaaccctcaccaactttgttgccacttcttcctctctggctgaagtaattctcctc
cctccctgaattcattctcgctttttttcctgtaagtaaccagacatttaagaactgagacattcaaaagcacccacatgtgtgaaaaatttagaaagtc
accacacatgcccaagcaaaggcacaagatcactaaatacctgaaaaggcctgaagtttacacctcagaattatatagcctacAAGAATTGTAAAAATAA
GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG
TGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCAC
TGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTAAAAATAAtaaataaataaataaaacct
gaggaagagggaaaacctgaattccaaagttcccacactataagatacaaatggtcctcttttacaaaaaatcacaaagcatacagagaaacagaaaaat
gtggcccattcaaagaagaaaaattaaaagtccagaaactattgtggacaaaaacctgatacagacttactaaataagcacttttaatacctgtattgaa
aataatcaatgaactaaagatgacatagagaaagtaaattaaataatgtattaacagaatagaaataccaacaaagagagaaaacagtaaaagaaacaaa
aaaattatggaattaaaaagtacaaaaactggaataaaaatttcactagcaggactaataaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 136177506 136177507 1002041 0 + 1104685691986 NA NA SINE Alu AluYa5 aggatgagctgagaatttgcatttctgacaagctcccagctgatgctgatgctgctggtccagagaacacacttcaacaaccactggacttgccaagtag
cactgacactggaaattataaatattgacagtgatggtagggcaaggtatgaaaggtatgaagatggtcaagaaagtttgcaattgtggagaatgtgaga
gaattgactagagaaacaatataaatagtgtcagtgtaacaaaagttaaagttttgactgaggcatcaagataccatagatattgaagcaattagtgaga
caggccaccctgtatgaatttcaaagtagcgaaccaataactgatttcaaaactcttaagcccttcactcagtatgggtttAAAAGCTCTGGTTGGTGGA
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG
GCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAATAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGCTCTGGTTGGTGGAtattaggggtacttgtaaggaatatttctagtaagagggctgttctgtgagccctccttcc
caagatggaagggtacagagtgcttctccctctacatcaagtcaggagagaggaattttaaggaccacttagcttgatatgtgacttctgcagttggaca
gatatggtcacatggtgtctgactctcacctggaaaatgtaaaaggctggccagtgctccaagagcaggagcaaaaatgttggtgctgtgttgagatatg
cctgctctcccagaatctgtcagagcaagggacatgtacgtgtaccccagggatcagacaaaagccacacatgcatgagagatcttcaggttaatggctt
tctgcactgtggaggtttca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 116722893 116722894 1002042 0 + 1104685359195 NA NA SINE Alu AluY acacacacacacacacacatacactggattctcaactttttcaagaaatggctatcagtacagaggtcaaatattagcaatgtttctgtctgaaggattt
ttgaaaaattactatccttttctctaaacatttctatattttctaatctcctcaaaatctccacaaatttctatattttctagtcccctcttaaaaatag
aaaaaatatatttaccatgcctagtaactaatcaaaatctcggtgatataggccatttttctgcaacttaagataactgcataaatttcaaattcttttc
caagaaaacattcagttttagaacatgtcaggtttaatagtctttgcatttccaaccaatatttctataattaacatggaatgcttTTGATTTATTATTA
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG
TGAAACCCCGTCTCTACTAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTG
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAGAAAAAAAAAT
AATAATAATAATAATAATTTGATTTATTATTAaacaaaaaaggaaaaggaaaaaaagaaaattgtcttgggaattgttactaatatgttaacagaatgca
gacatgaatttaaaactgaactaatctatgtagccatttcaacatgacataaattagaggaggatattattcatatctctattcccatcaaagataaggt
agggtaaagatgagaaaaacgtgtgagtataagtcatgttcaaaaagtaggagaaactgatggtgaacatttgtttccttatgctacatgctgcaacaag
ttagcatcatgagtttccttgcaaataaatattggttttgaaagtatgtatacattttattgaaacatactgtatatttgagtgtgctgaaaagcctgtt
tgtaaggctattaaatta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 119411885 119411886 1002043 0 - 1104685492350 NA NA SINE Alu AluYa5 tctatctatctatctatctatatatatatatatatatatatatatatatatactgtgtattcattcatttgccaatgaacacttagattgtttttctatc
ttggctactttgaataatgctgcaatgaatatgaaagtgcagacatgtctttgagatagtgattttatttcttttggatatatacccagaagtgggttgc
tagaccctgtggtagttctatttttaattttttgaggaatctctgtactgtttttcataacgtttgtaccaatttacactccctcccaccagtgtacagc
agtgaaagcgtttccttttctccacatctttaccaacatttgttattttttgacttttttaatagaaaaaaaatctaaaatgcttaTCTGTTGTGGTTTT
AGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATCTGT
TGTGGTTTTatccacataactaaaacaattttgagcagtaagaacaaagctgcaggcatcatatatcctgatttcaaactatagtaccaaactatagtaa
tcaaaatatggtactggcataaaagcagacacacagaccaatggaacagaagagagagcccagaaataaacccacacatgtatggtcatctaatcaacaa
ggtgccaaaaatatataatggagaaacaatagtctctttaataaatggtgttgggaaaactggatatgcatattcaaaaaaataaaattggattcttatt
ttacaccattcacaaaaatcagttcaaaatggatcaaagacataaacataagaccttattgtggttttgattggcatttctctaaaaagtaatga Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chrX 122500059 122500060 1002044 0 - 1104685357089 NA NA SINE Alu AluYb8 tccaagcccagttctgccccagcatcagggaagccaccacagacccgggtctccccttgtggatccatgctccaagcctgccccagtggactccggtgcc
atgctggccccatagacccaggcaccagttttatccaggcctgactgtttgcaggcagacccttgcagcaggcccgtctacagtgcccacctgtgtattc
aaacagaatttctggccaggatgactgatggagggctttccctgccaaagacagtctgtaaggactggaaaaggtgcttacttcttcaaatacatcgaca
ccaatataagccaacaaggatcacaagagatccaataattatgacaccaccaaaggaacaaaataaagcaccagggaccaactctAAAGAAATGGAGATC
GGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGGAGATCacaagtgacctcacaaagaattcaaaataattgtttttaagaagctcagtgagctacaagaa
agcgcagataaacaactgaatcaatcaagaaaataatacatgaacaaatgagaaggtcaacaaagaaaaaatataaaaaaagaaccaaattctggagctg
aagaacacaatgactgaactgaaaaattaaatagagagctccaacagcagacttgatcaagcaaaataaagaatctgtgaacttggagacagatcacttt
aaattatctagtcagagaaacaaaacaaaaaagaaatgaaaaaaggaaagcctacaggaccatgggacactatcaaaagaacaaatatatgcattatggg
aattccaggaggagcagagaaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 149279525 149279695 1002045 0 + 1104685490556 NA NA SINE Alu NCAI acaggtgtgagccaccatgcctggcccagtaaggttttaatcaaaggagtaacatgatcaaatttaatgactctgaaaagattggaaacaacctaaagat
ccagcagtaaggtattacgtttgttatggtgcatccatccagtggaatactaaatactaggcaacattttgtttttgagacagtcttgctctgttgccca
gtctggagtgcaatggcacaatcttgctcactgcagcctcaacctcctaggctcaagcaatcctcctgcctcagcctcccaagtatctgggactataggc
ccacgccaccaaacctggctaatttttatatatttttgtagagacagggtcttgctatgttgcccaggctggtcttgaactcctggcctcaagcaNNNNN
CNNNNNNNNNNNNNNNNNNNNGCCCAGAGCTGTCACCAAAGCCAGTGTTTTAAATCAATATATTATACTACCCCTAACATAGGAGAAGGAGAGGAGATGG
TAGAGTAGACTGTAAGAAAAGGACTCCTGGCTGGGCATAGTGGCCCACACCTGCAATTCCAGAACTCTGGGAAGCTGAGGCTGGTGGATCACTTGAGTCC
AGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACTCTGTCCCTACAAAAAATACAAAAAAAATTAGCTAGCCATGGTGGTGTGCCTGTAGCCGCAGCT
ACTTGGGAGGCTGGGAGGATTGTTTGAACCCGGGAGGCAGCGGTTGCAGTGAGTTGAGATAGTGCCTTTGTACCGGTCCAGCGTGGGCNNNNNgcttgag
caacatggagaaagcccatctctactaaaaatacaaaattagctgggtatggtggcacacacctgtaatcccagctacttgggaggctgaggcaggagaa
tcgcttgaaccggtgaggtggaggttgcggtgagccgagattgcgtcactgcactccagcctgggcgacaagagcaaaactccatctcaaaaaaaaaaaa
aaaaaagaagaagcagctctttctattgctatggaaagatcatgcagaatggtgggtataatatattatcatttgaataaaaagctaaagaggctgggtg
cagtggctcattcctgtaatcccaacactttgggaggctgaggagggcagatcatctgagcccaggagttgggaccagcctgggcaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:BNIPL:NM:138278:4/10
0 chr1 208985123 208985124 1002046 0 - 1104685477986 CCCTGAGATGTAAATGTTAAACAAA TTTTTCTTCATAGCACTTAAACAATTT SINE Alu NCAI aatacagttttggatgcgaaaataccagaatttctaggttaaaaaatggagcagaatagttgaatcctggctaccctagaaaaatccaggggatggaagg
cacccataaaccatttcctcagagaccttcccttgctctcatgctcccaatccaggttagtccccacattggcttttactcatggcatttttttttcttc
atagcacttaaacaatttattattattattattgagacagagtctcagtctgttacccaggctggagtgcagtggcTCTACTAAAAATACAAAAATTAGC
CGGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTGTTCTGGAGGCTGGAGACACAAGAATCGCTTGAACGTGGGAGGCAGAAGTTGCAGCGAGTGGAGGTC
GTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTGTTCTGGAGGCTGGAGACACAAGAATCGCTTGAACGTGGGAG
GCAGAAGTTGCAGCGAGTGGAGGTCatggggtttcgccatgttggccaggctggtctcgaattcctgacctcgggtgatccacccgccttggcctcccaa
agtgctgggattacaggagtgagccaccatgcctggccaacaatttataattttacatatgtaatctttgtttaacatttacatctcagggtagctttgc
cacctgctttatccccggtaactaacggcgcttgggtcttgtagggtgggtcccatggatctttggctcccagacactaggcatatttttcaatgtgtgg
t Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 499 377 NA intron:KCNH1:NM:002238:10/11
0 chr1 189355342 189355343 1002047 0 - 1104685258281 NA NA SINE Alu NCAI acgactttaggtatatgatagtacttgaacctcaaaggaataagacagttattgtgaaggcattctaagtgaaacaaatcggataagaaaagaaaattca
gtgacagtttgacttcctctataccgacttggatgtcctttctttctttctcttacctgattgctctggctgcaacctctgcctcctggactcaagtgat
tctcctgcctcagcctcccatgtagctgggattacaggcatgtgccactgcgcccgattaattttggtatttttagtagagacgaagtttcaccatgtta
accgggttggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccatgtagctgggattacaggcatgtgccactgcacccgactaNNNNN
AGTATTTTTAGTAGAGACGAAGTTTCACCATGTTAACCGGGTTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCATGTAGCTGGG
ATTACAGGCATGTGCCACTGCACCCAATTAATTTTGNNNNNtttagtagagacgaagtttcaccatgttaaccgggttggtcttgaactcctgacctcag
gtgatctgcctgccttggcctcccaaagtgctgaagctacaggcatgagccactgtacctggcccctaaatattttttgaaatgatattgttttactatc
aaaacctgttcttgattttattcccatccacattctcagggaattttgccgtaacttatatttcttcaaacttcacctcataatatttcctctctactga
ttatattttaccagcacttaaaattctcatgtcttgatcactttaaaatactctcctttgtgttctgtcacttttaacttctttttccatttttttcatt
caataacaaatttccaggaataaattgttcacaact Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr1 244882806 244882807 1002048 0 + 1104685304636 CCTGTGTTACTGCTTGGGTCT GAGTTGCTCTCTCCTAGATTAAAAGC SINE Alu NCAI ttcagaggtccccttgtgagcagattttagcaacatgatatgctgtgtggagataaaccattcatttttcttcattaacatctacatttataatctgctt
gcagaaatgtcatatgttcagaaaaatatattaagtgtttcagattgaagtgatttttgtttttagaaataatttcattatttctaaaatctgaggaaga
agccctgtgttactgcttggnnnnnnnnnnnnCGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATC
CTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGC
CGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCAT
CCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG
Cgcagtgagccgagattgcaccactgcactccagcctgggctacagagtgagactctgtctcaaaaaaaaaaaaaaagaaagcttttaatctaggagaga
gcaactcatgttccttgccctctgtctagattagcaacatttacttaaatgttttcagaactgcttgtatcacatgaagcaaaatacaggggaggacata
agttcacagtgtctagtggggagaaaaatgaca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 498 364 NA intron:C1orf71:NM:152609:9/11
0 chr10 31041286 31041287 1002049 0 + 1104685337396 NA NA SINE Alu NCAI taagtttgtagtttttcgtataccatccgcatgaaatttctggtcttttatgtaaagtgaaaataccagtaattaatatcttatcacatttttatgtttt
cattgatacaattagtttaatatcactgagtatgtgcaattgattatcttcctgaaaaactctttagcaataaataacatatgaaaccttccacccaatg
ttatagtgaatgtggatgtataagatgctgtcgtttgctgtcagtcatattggagttaatcccatggtaggaaggcagacagatgactctacaggtgaat
tcaGAGTCTATACTTCTTGAACCTAACAAAACGCTGTGTATTCCTGGAAGGGAGAGAGAGGCTCTATCTGCAGCTTCTGGGTGGAGCATTTTCTTCCTCC
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGCAGGAAAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGAGTCTATACTTCTTGAACCTAACAAAACGCTGTGTATTCCT
GGAAGGGAGAGAGAGGCTCTATCTGCAGCTTCTGGGTGGAGCATTTTCTTCCTCCaggttgattataggtcactattgtagtcacaggcatgaaactaac
atcttatataaacattatccatgtgttgttatgaactactcgtaacttgcattttaagcatgaagtcatgagttctggcaaagaagaaaagatttcaagg
gaaatcagcgaaagacagtgtctcccttgggtctactgacattgcattctgtgtaactacaggaaaaaactctcaagaagccagtccccaagtcttacct
tatccatgctggtctggagcccctaacattcaccaatatgtttcctagctgggagcac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr10 14524821 14524822 1002050 0 + 1104685342302 NA NA SINE Alu NCAI gccactcaatgcactatggtaacttgttacaggaggaacagaagaccaatgcagcataactgtatgagtctgcaacaaaattttagcaaaccatgccaag
caatttacaaaaaatataatatatcatcaataagtgagatagtcccaagagttgaagattggtttaacatttttgaaaaaaaatctataattgaccatat
taacaagtttaaaaagaaaagccatttgatcatctcaaatagatacagaataagcatttgacaaaatttagcacctgttcacggaaagaaaaccacaaac
ctctgccaaataggaaaagaaggaaatttcttcaccttaataaaatatatctactaaaaatctacagcttacattataactcactataaaagaagNNNNN
GGCCGGGCGAGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAAACG
GTGGAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTATANNNNNatgtctatacttacc
acctctattcaatattgtacctagccagtgtaacaaaacaagaaaaaaaaaggaatagacttggagaaaaagaaagaaagctcttcttttcacaaatggc
atgatctaattctaaaaaaccatttttaaaaaggctactagaacaaataagggagtttatagcaaggccacaatatacaagatcaacatagaaaaattca
gtgtacttatatatagtcgcaataaaaaattgaaaattgggaagtgaattatactaaaatctgaaacattttgctgagaaaaaaatttaaaaaaacataa
ataagtggagagatgtatcatttcatggatggaaagacaatgtggttaaaatcctagcaggcatttttggtagaaatttt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr11 102553776 102553793 1002051 0 - 1104685399546 GCCCCCTCCAAAGTAAAATATC AGGCCATATTGACATGGACAC SINE Alu NCAI ccaggaaatccgcagttttaccacttaaattttcaaaagtattcaaaatactttattcaaactaatgagttaatactgttcatacacaccaattttaacc
ccaaacaaaaatctgtcatcttgtttatttctgaggcagtataatatcaactcagcaaagattttatattcattcagtaaattaatctagttgtgaatta
caattcacccaacttactctaagtttctattatattaaaaatagttacagagtttaactgaaaatgatagcatgtcttggccccctccaaagtaaaatat
caaatgtacatcattttaacttaattatgactttatggtcatgtagaagtcttgacaaagacagcattatagacaaattatatcattatctaagaNNNNN
TGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATG
GTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG
TGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCTTAGATAAATGAGGAAAA
AACAGGGGGATTACTAGTAAGCAAGNNNNNacatagagactaccttgaggtcccgaaccacttgacgagcactatttgtcaaacaccatcagaccattct
cttgtgtccatgtcaatatggcctaataattgatatcgaggcatagctttgggattcatagtatattgtttcactactttgccagttttacaaagcgcag
cccttaacattctccaaagcgttgattttccagcaccacttggaccaacaataacaactcccatcctctggcataactgttcatacaattctaaagcctt
tttgatctagtaggaaagaaatatgttcatatatgatttataatattcaatcatacttagttctgcttttattctgtaacacttgttctaatgtgtaaat
taagcctttgatttcttcagtggaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 545 238 NA intron:DYNC2H1:NM:001080463:38/90
0 chr11 105571431 105571432 1002052 0 - 1104685398679 TCTGAAAAGAACTAGAAAACAAACAG AAAAGAACTTTCCCGGAGGA SINE Alu NCAI tgattacatcactTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAAGTGATCCACCTGTCTTGGCCTCCCAAA
ATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACGGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTC
CTTACCTAAGGTGATCCACCTTCATTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGAC
AGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTGAGGTGATCCACCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC
GTGGCTCACGCCTGTAATCTCAGCATTTTGGGAGGCCAATGAGGGTGGATCACCTTAGGTAAGGAGTTGGAGACCAGCTTGGCCAACATGGTGAAACACC
GTCTCTACTAAAAATATAAAAATTAGGGCTGGTCGTGGTGGCTCACGCCTGTAATCTCAGCATTTTGGGAGGCCAATGAAGGTGGATCACCTTAGGTAAG
GAGTTGGAGACCAGCTTGGCCAACATGGTGAAACACCGTCTCTACTAAATTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCC
CAACCTCAAGTGATCCACCTGTCTTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACCACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACG
GTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTAAGGTGATCCACCTTCATTGGCCTCCCAAAATGCTGAGATTACAGGCGTGAGCCACC
ACGACCAGCCCTAATTTTTATATTTTTAGTAGAGACAGTGTTTCACCATGTTGGCCAAGCTGGTCTCCAACTCCTTACCTGAGGTGATCCACCCTCCTTG
GCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACaggcagaggttgc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1021 884 NA intergenic
0 chr11 128960571 128960791 1002053 0 - 1104685189147 CCTCCCTCATTAACCAGCACT GCCTGGGATTTGATTTTCTGT SINE Alu NCAI aacatttattgagcatttgctatatgataggcatcattccaaatgctttacaatctcacaatacccatgagttagatactactattatcatgctcatctt
tttttatagatgtgacaactGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAA
ACCCTGTCTCTACTAAAAAAAAAAAACACAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGC
TTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGAATCATGAGGTCAGGA
GTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAAAAAAAACAAAAAATAGCTGGGCTTAGTGGCAGGTGCCTGTAATCCCAGC
TACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCCTGTAATCCCAGCACTTTGGGAG
GCCGAGGCGGGCGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAACCCAAAAAATAGCTGGGC
ATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGATCCTGGGACACAGAGGTTGCAGTGAGCCAAGATCATGCCA
TAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAA
AAAAACAAAAAATAGCTGGGCTTAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTG
CAGTGAGCCAAGATCGTGCCACTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGAATCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA
TGGTGAAACCCTGTCTCTACTAAAAAAAAAAACCCAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG
AATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCAGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCCTGAGGTCAGGA
GTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAAAAAAAAACACAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAG
TTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTACCTGTAATCCCAGCACTTTGGGA
GGCTGAGGTGGGTGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTTAAAAAAAAAAAACAAAAAATAGCTG
GGCTTAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGTG
CCACTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCT
ACTAAAAAAAAACCCAAAAAATAGCTGGGCATAGTGGCAGGTGCCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGATCCTGGGACA
CAGAGGTTGCAGTGAGCCAAGATCATGCCAaagaggtaaagtaacttgccataggtcacactgctcgtaagtgacagggccatgattgtgctcaggaagt
ctgaccccagagccaactctcttaactattgcatgattcagcctccctgt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1353 1124 NA intergenic
0 chr12 3747727 3747869 1002054 0 + 1104685486627 NA NA SINE Alu NCAI attttttacaatgtaattgatatgcagaaaggaaagaaaatggaatcgtacaaaatgctcagtaaaactcagagaaggtggggaaaggggaaaatttgaa
aaggaaacaaagaataagtacaaaaaaaaagaagatagttagaagtgtgatagacagtaatccaactatatcaaaaatcactttaaatgtgtgttctagg
ccgggaagcctaggaagccaggcttaagaataagaaacaaggccaagtgtggtggatcacacctataatcccagcactttgggaggccgaggcgggtgga
tcacccaaggtcgggagttcgagaccagcctcaccaacatggagaaacctcgtctctactaaaaatacaaaattagccgggtgtaatgGCTGGGATTACA
GGCGTGCACCACTACGCTTGGCTAATTTTGTATTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCT
GCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTACGCCCAGCTAATTTTGTGTTTTTAGTGGAGACGAGGGTTCTCCATGTTGGTC
AGGCCGGTCTTGAACTCCCGACCTTGGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGTGCCATTACACCCGGCTAATTTTGTA
TTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTGAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTA
AATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACCCAAGGTCGGGAGTTCAAGACCGGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAAT
ACAAAATTAGCCGGGCATAGTGGTGCATGCCTGTAATTCCAGCACTTTGGGAAGCCGAGGCAGGCGGATCACCCAAGGTCGGGAGTTCGAGACCAGCCTC
ACCAACATGGAGAACCCTCGTCTCCACTAAAAACACAAAATTAGCTGGGCGTAGTGGCGCACGCCTGTAATCCCAGCGCTGGGATTACAGGCGTGCACCA
CTACGCTTGGCTAATTTTGTATTTTTAGTAGAGACGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCTGCCCACCTCGG
CCTCCCAAAGTGCTGGGATTACAGGTGTGCGCCACTACGCCCAGCTAATTTTGTGTTTTTAGTGGAGACGAGGGTTCTCCATGTTGGTCAGGCCGGTCTT
GAACTCCCGACCTTGGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGTGCCATTACACCCGGCTAATTTTGTATTTTTAGTAGA
GACGAGGTTTCTCCATGTTGGTGAGGCTGGTCTCGAACTCCCGACCTTGGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTAcgaggtgggca
gatcacccaaggtcgggagttcgagaccagcctgaccaacatggagaaacctcgtctctactaaaaatacaaaattagccaggcgtagtggtgcacgcct
gtaatcccagctactcgggaggctgaggcaggagaatcacttgagcctgggaggcggaggttgcgatgagccaaggtcgcaccattgcactccagcctgg
gcaacaagagcaaaactccgtctcagaaaaaaaaaaaaaaagtgtggtctaagtaaacaaaagacagagattgtcacaatggatttaaaaaacaagactg
aactaaatgctgtttataagaaactcactttaaataaaaagacacagatagaataaattaaaggggtggaggaaaag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr12 49858623 49858624 1002055 0 + 1104685303114 CTAAGGAGAGGCAGGGGAATA TCCTCTTGTTATCCAGGCAGA SINE Alu NCAI actttacataagtcctttcaaaagaaatgaaataaatacaattatagtgatggccacatctaaggagaggcaggggaataggtgagggaaggaactagaa
aatagcttcagcgtggccaggcaccgtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacatgaggtcaggagtttcacacc
agcctgaccaacatggagaaacccagtctctactaaaaatacaaaacAGTGGTGGTGCGTGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA
TCTCTTGAACCCAGCAGGCAGAGGTCACAGTGAGCCAAGATCAGGCCACTGCACTCCAGCCTGGAAGACAGAGTGAGACTCCGTCTCAAAAAAAAGAAAA
ACTTAGTGGTGGTGCGTGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCAGCAGGCAGAGGTCACAGTGAGCCAAGATCA
GGCCACTGCACTCCAGCCTGGAAGACAGAGTGAGACTCCGTCTCAAAAAAAAGAAAAgaaaagaaaagaaaatagcttcaggcttaggcgtggtggctca
cacctgtaatcccagcactttgggaggccaaggagggcagatcacctgagatcgggagtttgagaccagcctgaccaacatggagaaaccccatctctat
taaaaatacaaaattagccgggtgtggtggaatgcggctgtaatcccagctactcaggaggctgaggcaggagaatagcttaaacccaggacgcagaggt
tgca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 790 642 NA intergenic
0 chr12 108790406 108790407 1002056 0 - 1104685034642 AGTTCAGATGGGTGACATTGC GGCAATTTGGTCACCTTGTTA SINE Alu NCAI caggaacatcccatgttgtaagagatggctgtttgaagaggcaggcatggaggggcagcttggatggcaacttccaggtatatgctGTGGCTCCTGCCTG
TAATTCCAGTGCTTTGGGAGGCCAAGGCGGGAGGATCACTTGTGGCTAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGTCCCCATCTCTACAAAAAA
TTAAAAACAAAAAATTAGCTGGTCGTAGTGACATGTGTCTGTAGTCTCAGCTACTCCAGAGACTGAGGCTGGAGGATCACTTGAGCCTCGGAGGTCAAAG
CTGCAGTGAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCATCCTGG
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCAGCCTGGGTGGCTCCTGCCTGTAATTCC
AGTGCTTTGGGAGGCCAAGGCGGGAGGATCACTTGTGGCTAGGAGTTCAAGACCAGCCTGGGCAACAAAGTGAGTCCCCATCTCTACAAAAAATTAAAAA
CAAAAAATTAGCTGGTCGTAGTGACATGTGTCTGTAGTCTCAGCTACTCCAGAGACTGAGGCTGGAGGATCACTTGAGCCTCGGAGGTCAAAGCTGCAGT
GAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGTGGATCACGAGGTCAGGAGATCGCGACCATCCTGGcaggaag
ctgaggcaggagaatggcgtgaacccagaaggcggagcttgcagtgagctgagatcgtgtcagtgcactccagcctggg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1121 889 NA intron:GLTP:NM:016433:1/5
0 chr12 131955315 131955316 1002057 0 - 1104685428247 NA NA SINE Alu NCAI cttcccctcgaccccagcagcagtcactccgcatgtccccttcccctcagccccagcagcagtcactccgcatgtccccttcccctcggccccaccagca
atcactccccatgtccccttcccctcggccccaccagcagtcactccccatgtccccttcccctcggccccaccagcagtcactccccatgtccccttcc
cctcggccccaccagcagtcactccccatgtccccttcccctcggccccatcagcagtcactccccatgtcccctccccccagcccctggcagctgcgtg
tgctttcggcctctggatttttctgttctagacacttcacagacatggaatcatgcgtgctcttttttgttgttgttgagacggagtctcgctctNNNNN
TCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC
AGGTGCCTGCAACCACGCCCGGCTAATTTTTTTTTGTTTTTTGTTTGTTTGTTTGTTTTGAGATGGAGTCTCGCTCTGTCGCCNNNNNtggagtgcagtg
gtgcgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgcaaccacgc
ccagctaatttttttttgttttttgtttgtttgttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaa
gctccgcctcccacgccattctcctgggtccacgccattttcctgcctcagcctctgagtagctgggactacaggcacccgtcaccacgcctggctaatt
ttttgtatttttagtagagacggagtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgtccgatcgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:CHFR:NM:001161346:6/18
0 chr13 21325597 21325598 1002058 0 + 1104685715631 TTCAGTGGGATAGAAAATTGGA GGCACAATGTAATCAGAAACTCC SINE Alu NCAI tggaaagtcagtggcctttcaaatgttaatcccttgtgattttgccacttactgaaaatccttttctactaatgaagaatacattaggaaaaagccgtga
tgtttagtcttcttgctgatatttggtaccaagctatgcagccctcacagaacctctaatgaaatatctgccatggctgatcgtgtgtatgtgtctcagt
gagcatacaacattgatcagggcctcgggtttctttggagtgaagttcagtgggatagaaaattggagtttctGCTCATGCCTGTAATCCCAGCACTTTG
GGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGG
GCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAAT
CCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAG
GAAATCGAGACCATCCTGGCTAACACGGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGaggctgaggcaggagaatggcatgatcccgg
gaggcggagtttgccgtgagccgagatggcgccactgcactccagcctgggcgaaagagcaagaccccgtctcaaaaaaaaaaataaataaataaataaa
aaataaaaaaataaagaaaactggagtttctgattacattgtgccagatatctattttatggattcaggtccactatttatagaaccaagtaaaaactgt
tttagaattcagaacttggaaaaatatgtagctaccttcaaa Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 599 330 NA intergenic
0 chr13 112878857 112878858 1002059 0 + 1104685140641 GGGGAAATGTGCATAGTCTGA AAGGTGGTATTCTTGCTGTGC SINE Alu NCAI ctgtgccgcgcggcccggagagagagaaagagggattcacactttgtagaatagcctctccttgaacaagcagctttcaaatgcagtaactttgcaaaga
tgagctcttatggtttgtgttcttctttagtaaattttttataaacggggaaatgtgcatactctgaaaaatggcagtgctggggactaaactgtgtccc
ccaaatttcttacattgaagtcctagccccagtgtgactgtatctggaggtaaggtcttcagggggtaactaaggctaaatgtggtcataagggtggggt
cctaaccACAGAACTGTGGCCTTATAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGTGGGGGAATTGC
CCCCGACAGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCC
CGACAGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCTGAGGCGGGGGAATTGCCCCGAC
AGAACTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAA
CTGTGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAACTG
TGGCCTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAACTGTGGC
CTTGTAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCAGCACTTTGGGAGGCCGAGGCGGGGGAATTGCCCCGACAGAACTGTGGCCTTA
TAAGAGGAAGAGAGCCGGGTGTGGTGGCACATGCCTGTCACCCCAGCACTTTGGGAGGCCGAGGTGGGGGAATTGCttagcccaggcgttccagaccagc
ctgtgcaatattagcaagaccctgtctctacaaaaaataaaaaaattagttgggtgtggtggcatgcacctgtgctcccagctacttgggaggctgagga
gggaagatcacttgagtctcggaggtcgaggctgcagtaagcactgactgcactgccgcactccagcctgggtgacagagtgaggtcctgtctcaaaaaa
ggagggagagagtcatctctatctgtaccatctctagcacagcaagaataccaccttattcttaagtgtgcaactcagaagag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1210 537 NA intergenic
0 chr13 113059490 113059491 1002060 0 + 1104685140705 CATCCACTGAAAGCCAAAGAA AACCGTAAACCAAGTGTGCTG SINE Alu NCAI caaggtgatccacaatgtatgatcatctggacacgagcagatgatcatgtgctatgtgattactgagaaaatcaggctctggaaggacaggcccttgtct
gtccactgggcctcccactcctggGTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCAAGAGATCGAGACCATC
CTGGCCAACATGGTGAAACCCTGTCTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTG
GGCAGATCACCTGAGGTCCAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTCAAAATACAAAAATTGGCTGGGCGTGATGGCTCA
GTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGT
CTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTCGTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCACGAGGTCA
AGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTCTACAAAAGATACAAAAATTAGCTGGACGCGGTGGCTCATGCCTGTAATCCCAGCACT
TTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCCAGAGATCGAGACCAGCCTGGCCAACATGGTGAAACCTCATCTCTACTCAAAATACAAAAATTGGC
TGGGCGTGATGGCTCAaaaaaaagaatccctcttaagaaaccctctttctggtttagaaacatatttgaggatcatgtctcaggtaagaacatctcagca
cacttggtttacggtttattcacactgcttacgggaacat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 689 556 NA intron:GRTP1:NM:024719:2/8
0 chr14 89324706 89324707 1002061 0 - 1104685286351 NA NA SINE Alu NCAI atgccactgcactccagcctgggcaacaaaagcgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaacagatcttactttatggtggatcttct
atacctttccactatttaaatttataataaaagtttaaggtatcaattaaaaatatggaaaaaggagtacataacttttcggaataatgttatggaatac
ttagcaaaaaacccgtgtagagcaccacttgcggcactttttttttttttgtctgggacatggagttttgcttctcctgcccaggctggagcgcagtggc
gcgatctcggctcaccgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatgctccaccgNNNNN
AGCTAATTCTGTATTTTTAGCAGAGATGGGGTTTCATCATGTTGCTCAGGCTGGTCCTGAACTCCCGAGCTCAGGCAATCCGCCCTCCTTGGCCTCCCAA
AGTGCTGGGATTACAGGCGTGCTCCACCACGCCCANNNNNttctgtatttttagcggagatggggtttcatcatgttgcccaggctggtcctgaactccc
gagctcaggcgatccgccctccttggcctcccaaagtgctgggattacaggcgtgctccaccgcgcccggctaattctgtatttttagcagagatggggt
ttcatcatgttgcccaggctggtcctgaactcctgagctcaggcgatccgccctcctcggcctcccaaagtgctgggattacaggcgtgcgccaccgcgc
ccagctaattctgtatttttagcagagatggggtttcatcatgttgcccaggctggtcctgaactcctgagctcaggcgatccgccctcctcggcctccc
aaagtgctgggattacaggcgtgcgccaccgcgcc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 56657145 56657146 1002062 0 - 1104685219345 NA NA SINE Alu NCAI gaacccacaaacatgttgtaatttttttttttttttggagactgagtctcgctttatcacccaggctggagtgcaatggtatgatctcggttcactggaa
actccgcctccctggctcaagcgattctcctgccaagtagctggaattataggcacacattaccatgcctggctaatttttgtatttttagtagagacag
ggtttcaccatgttggccaagctggtctcgagtccctgaccccaagtgatctgtccacctcggcctcccaaagtgcggggattataggcgtgagccacca
ctgtgcccagcctgtaagtttttttagtcagctaaaaaaaaaaaatccagccgggcacagtggcacatgccTGTAATCCCAGCACTTTGGGAGGCCGAGG
NNNNNNNNNNNNNNNNNNNNTCAGATTTCAAGATGAGACTAGGCAGGGCCAAATAAACCATACCCAACCCACAGCACAGTCCTGGAAACAAATATGGATT
TCGGTACTAGGCGTGGGTTGCTGCTGTAACAAATACCTAAAATGAGGAAATAGCTTTGGAATTGGATAATGGGTAGAGGCTGGAAGAATTTGGAGGTACA
TAATAGAAAAAAGCCTACATTGCCTTGAGTAGACTGTTGGTAAAAAACAAAAATATATATATATATAGATAGATAGATAGATAGATGATAGATAGATAGA
TAGATAGATATAGATATTAAAGATGCTGATGTTGGCTGGGTGCGGCGGCTCATGCCTATAATCTCAGCACTGTGGGAGCCTGAGGCGGGCGGATCACTTG
AGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGGGGCGCATGTAATCCCA
GCTACTGGAGAGGCTGAGGCAGAGGCTGATATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTTTGTCTCCAAAATAAAATAAAATAAAATA
AAAATAAATAAATAAATAAAGATGCTGGGCGGGCGCAGTGGCTCACACTTTGTAATCCCAGCACTTTGGGAGGCCGAGGgggcggaccacaaggtcagga
gttcaagaccagcctgaccaacacagtgaaaccccgtctctactaaaaataaaaaaattagctgggcatggtggcgcacgcctgtagtcccagttactca
ggaggctgaggcaggagaatcgcttgaacccagaaggcggaggttgcagtgagtgaaccaagattgcgccactgcactccagcttggtgatagaatgaga
ctctgtctcaaaaaaaacaaaacaaaacaagaaagaatccaatccaacctgtaatttttttttttttttttttttttgagacagagtgtcttgttctgtc
acccaggctggagtgcagtggcacgatcttggctcactacaaccttcacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr16 16169654 16169655 1002063 0 + 1104685488440 NA NA SINE Alu NCAI aggattttgaaagggctatttgccacccaaatgaggatttgggttaattccagggctcggctgactctgagaatccctaatttcctcttggttaagtaac
cattcgccttgagtattccactgtacatgcagttgtggtgagtaggtgtacaggttcttaggactagaagagtcctcaagttcaggcctggcgcccccta
ttttacaggggaggtcacaggctcacagcattttggtgatgtggccaatgtcacccagtgaatgaggacgaatcaacatgaaaacgaggcaactgtcctt
taaagatgaaCCAGGCCGGGCGTGGTGGCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGACCAG
GGCCGGGCCTGGTGGCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGACCAGGCCGGGCGTGGTG
GCTCATGCCTGTGATCCCAACACTTTGGGAGGTTGAGGCGGAGGATTGCCTGAGCCCAGGAGTTTGAGACCAGcctgggcaacacggcgaaaccgtctct
atcaaaaacaaaaattagccagcatggtggcatgtgcatgtagtcccagctactcgggaggctgaggtgggaggattgcttgagcccaggaggcagaggt
tgcagtgagccgagttcgtgccactgcattccagcctgggtgacaaagccagacccagtctatatatatgtgtgtgtgtgtataaataagaagccaaact
cacatgtgcactcctgttactcccttcagccaggccacgtattaaaaggagaagaaccaggggttggggacagggtgggcgag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:ABCC6:NM:001171:22/31
0 chr16 88211816 88211817 1002064 0 - 1104685077899 NA NA SINE Alu NCAI gtattacacaatatgaagatgaatggtaaatacatgctaataatttaaaattttaatttttcttgacttagaatgatgattttttatttttattttttta
tattttttgagactgagtctcgctctgtcgcccaggatggagtgcaggggcacaatctcagctcactgcaacctccgtctcccaggttcaagtgattctt
gtgcctcagcctcccgagtagctgggattacaggtgcgtgccaccacacacagctaatttttgtatttttagtagagatggggtttcaccatgttggcca
ggctagtctcaaactcctgacctcaaatgatctgcccgtcttggcctcccacagcgctgggattacaggtgtgagccactgcgcccggcctcccaNNNNN
CTGGGATTACAGGTGTGAGCCGCCGCACCCGACCTCCCAAAGTGCTGGGATTACAGCCCTGAGCCAGCACGCCCAGCCTCCCACAGCGCTGGGATTACAG
GTGTGAGCTGCCGCGCCCAGCCTCCCACAGTGCNNNNNttacaggtgtgagccaccgcgcccggcctcccaaagtgctggggttacaggtgtgagccacc
gcgcccggcctcccacagcgctgggattacaggtgtgagccgccgtgcccgacctcccaaagcgctgggattacaggtgtgagccgccgcacccgacctc
ccaaagtgctgggattacaggtgtgagccgccgcgcccggcctcccaaagtgctgggattacaggtgtgagccgccgcgcccggcctcccaaagtgctgg
gattacaggtgtgagccgccgcgcccggcctcccaaagtgctgggattacaggtgtgagccgccgcgcccggccgccttccagcatttctggcacagacc
ggcacaggtgtgggctcctgtcctttgcatgtt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:DPEP1:NM:001128141:1/11
0 chr17 7390485 7390486 1002065 0 - 1104685549247 CTCCATCCCATAATCCATGTG CACCTGAGGTCAGGAGTTCG SINE Alu NCAI atctctacaaaaaatacaagaaaaattatccaggtgcgatggcatgctcctgtagtcccagctactgtggaggctaagtcaggaggatcacttgatccca
ggagtttgaggttgcagtgagctatgatcaccccattgaaccgaagcctcggcagcagagtgagaccctgtctctataaaaaataaaataaataggccgg
gcacagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgtagtg
aaacaccatctctactaaaaaatacaaaaattagctgggcatggtggtgcacacctgaagttccagctacttggAAATAAAATAAATAGGCCGGGCACAG
TGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGTAGTGAAACAC
CATCTCTACTAAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGGGAAGCTGAGGCAGGAGAACTGCTTGAAATAAA
ATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGATCAAGAGTTTGAGACCAGCCTGGCC
AACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAATCCCAGCTACTCGAGAGGCTGAGGCAGGAGAA
AATAAAATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGATCAAGAGTTTGAGACCAGC
CTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGGGAAGCTGAGGCA
GGAGAAAAATAAAATAAATAGGCCGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTC
GAGACCAGCCTGGCCAACATGTAGTGAAACACCATCTCTACTAAAAAATACAAAAATTAGCTGGGCATGGTGGTGCACGCCTGAAGTTCCAGCTACTTGG
GAAGCTGAGGCAGGAGAACTGCTTGAAATAAAATAAATAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGAT
CACGAGATCAAGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCACGCCTGTAA
TCCCAGCTACTCGAGAGGCTGAGGCAGGAGAAggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacgagatcaag
agtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggcgcacgcctgtaatcccagctactc
gagaggctgaggcaggagaatcacttgaacctgggaggcagaggtcgcagtgaggcgagattgtgccactgcactccagcctgggcgacagagtgagagt
tcatctctcagaaaaataaaaataaaaaataaaataaaataaatgaaacacaagctataacacaacataattgtatttaattgatacagtatcaatttag
ggcctt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 803 589 NA intergenic
0 chr17 68209737 68209738 1002066 0 - 1104685275526 GTTGAGGGACCATCTCCTTGT GTGATCTGTCCACCCTGAGAA SINE Alu NCAI aggtgctgcctaaagaaaaaaacagtagcctcctatctttggactcagtagaacacaggaagatagggttagcttgcgagtttatgagagcatgtggatt
ggtatatccaaggttagtgatctgtccaccctgagaaatgtctatgttcttttttattttattttatggagacagagtctcactccattacctaggctgg
agtgcagtggtgtgatcacagctcactgcagcctccatctcccaggctcaGCTGAGGTGGAAGGACTGTTTGAGCCCAGAAGTTAAGTTTGAGACCAGCC
TGGGTGATATAAAGAGACCCCATCTCTATAGAATGTTTAAAAATTAGCCAGCTGTGGTGGTGCCTGCCTGTAGTCCTGGCTACTCAGGAGGCTGAGGTGG
CCACCTCAGGCTGAGGTGGAAGGACTGTTTGAGCCCAGAAGTTAAGTTTGAGACCAGCCTGGGTGATATAAAGAGACCCCATCTCTATAGAATGTTTAAA
AATTAGCCAGCTGTGGTGGTGCCTGCCTGTAGTCCTGGCTACTCAGGAGGCTGAGGTGGtgctgagattacaggcgtgagccaccacactctgcgtgtct
atgttctttttttttttcttttccttccttccttccttttctttctctttctttctttctctttttctttttttttttttttttgagacagaatctccct
ctgtctcccaggctggagtacagtggtacaacctcggctccctgcaacctccgcctcccaggttcaagcaattcttgtgcttcagcctccccagtagctg
ggactacag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 957 817 NA intron:SLC39A11:NM:001159770:7/10
0 chr19 4512918 4512919 1002067 0 - 1104685559535 NA NA SINE Alu NCAI cgcaaggacaaacactgtgtgacccactcctaggaagtccctagagtcatcaggttcactgagacagtaggatgggaggtgccaggggctggggaggggg
gtgaggagtgagtgtttcatggggacagaatttcagtttgggaagCCCGGCTAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATATTGGCCAGGC
TGGTTTTGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCGGCCAATTTTTGTATTT
TTAGTAGGGATAAGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
CTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCTTATCCCTACTAA
AAATACAAAAATTGGCCGGCCCGGCTAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATATTGGCCAGGCTGGTTTTGAACTCCTGACCTCAGGTG
ATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCCCGGCCAATTTTTGTATTTTTAGTAGGGATAAGGTTTCACCATAT
TGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGgacagagcaggactcttgtctccaaa
aaaaaaaaaaaaaaaaaaaaagagcactcaccccttgggggtgctgtgaagattaaatgagttaatttaagtacttatgataatgcctggcacctagcaa
gtgctttatgtttgctagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr19 17694248 17694249 1002068 0 + 1104685513355 CTTGTGGCTTCCTGACACTTC CAAGCAATTCTCCAACCTCAG SINE Alu NCAI cttcatggggcagaaagtggagctggaaatcctgtctgctgtgtgtgaacttcgtggccacttcccttctttatgccttgatttccccacctgaatgggg
caatatccctgtgtggcaaaaagcatgctaaggctgggtggggtggctctcgcctgtaatcccaacactttgggaggtcaaagtgggaggattttttgag
gtcaggagttcaaaaccagctggGAAACCCTGTCCCTACTGAAAATGCAAAAATGAGCTGGACCTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAG
CCCGAGGAGGGAGGATCGCTTTTACCCAGGAGGCAGAGGCTGCAGTGAGCTAAGATTGTGCCACTGCACTTCAGCCTGGGCAACAGAGCGAGACCCTGTC
GAAACCCTGTGAAACCCTGTCCCTACTGAAAATGCAAAAATGAGCTGGACCTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGCCCGAGGAGGGAG
GATCGCTTTTACCCAGGAGGCAGAGGCTGCAGTGAGCTAAGATTGTGCCACTGCACTTCAGCCTGGGCAACAGAGCGAGACCCTGTCaaacttaggcctg
acatggtggctcacacctataatcccagcactttggaaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctgaccagtatggtgac
accccatctctactaaaaatacaaaaattagctggttgtggtggcaagcgcctataaccccagctacttgggagactgaggttggagaattgcttgaact
caggaggcag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 812 646 NA intron:MAP1S:NM:018174:2/7
0 chr19 9038588 9038589 1002069 0 - 1104685282581 GCAAGCGGTAGTCTCTGCTATT TGATAGGTGCTGGAGATAAGCA SINE Alu NCAI tgacctcatgatccacctgacccagcctcccaaagtgctgggattacaagtgtgagccaccatgcccagcccacttattctttaattcacatatttattc
atttagcaagcatattctaagttgataggtgctggagataagcaataagacttagatgaccaagtgcagtggctcatgcctataatcccagcacattggg
aagtagagtcgggaggattgcttgagctcaggagttcgagaccagactgggcaacatggtgaaaccctgtctctactaaaaatacaaaaattagccagat
gtggtggtgcacacctgttaacccagctactcgggagactgaggtgggaggatcacttgagcctgggaggtggaggttgcagtgagctatcgcacNNNNN
CACTCCAGCCTGTGTGACAGAGCAAGACCTTGTCTCTCAAAAAAAAAAAAAATAGGCCGGGCCTGGTGGCTTAGGCCTGTAATGCCAGCACTTTGAAAGG
CCGAGGCGGGCAGATCACCTGAGGCCAGGAGTTCGAGATTAGCCTAGCTAACATGGTGAAACCCTGTCTCTATTAAAAGTACAAAAATCTACTAAAATTA
CAAAAATGGTGGCACTGCCTGCAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCACTTGAACTCGGGAGGCGGAGGTTGCAGTGAATCAAGATCAC
GCCACCGTNNNNNagcctggcgacagagcaagactccatctaaaaaaaaaaaaaattacccaggtgtagtggcgtgcacctgtaatcccagctacttggg
aggctgaggcagaagaatcgcttgaatcctcctgagtagctgggattacaggtgcccaccaccacacccagctgatttttgtatttttagtagagatggg
gtttctccatgttggtcaggttggtctcgaactcccgacctcaggtgatccaccctcctcggcctcccaaagtgctgggattacaggcatgagccactgc
gcccagcctgaaaactgttgctgaatgcagtcacatcggaagtaaaggcttcaacttgtgaatttgagggggatacaattcagagcgtcacagagagaga
acatgagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1015 708 NA intergenic
0 chr2 131603438 131603789 1002070 0 - 1104685027690 GGGTAAAGGAGTGAGGGAGTG AATTCATAGGCAAAAAGCAGTC SINE Alu NCAI gcttgcgcctgggaggtcgaggctgtagtgagccaagatcacaccactgcactctagcctggatgagagagaggggctctatctcaagaaaaaaaaaaga
agaaaagaatgctattaacatccctattacccttacactcttatgtaaacatctccacagggcaaattccaaagactgaaaataccacatcaaaggataa
aaacataatttatttcagcaggtattgccaaaatgccctgcaaaacgattctaacaatctctatacctaccaactttacactatattgtcaaaaaaaact
agatatctgaaccttaagtatcacaagagctttcttaattcataggcaaaaagcagtctctcacgcctgtaatcccagcacttcgggaggtcaagNNNNN
TGATCACCTGAGGAATGCAACTTAACTGCATTCCTTAGAAAGCTAGAACACTTGGGCTGGGTGTGGTGGCTCAAGCTTGTAATCCCAGCACTTTGGGAGG
TCAAGGCGGATGNNNNNcctgaggtcaggagttcgagaccagcctggccaacatggtaaaaccaagcttctactaaaaacacaaaattagctgggcgtgg
tggcacatgcctgtaatttcagctactccagaggctgaggcaggagaagtgcttgaacccgggaggcagaggttgcatgagcggagattataccattgca
ctctagcctgggcaacaagagcgaaactccatctcaaaaaacaaaatagtgttctcttgtgcactccctcactcctttaccccttactttcttactgacc
ctatccctcttatcttcatcaattcctttnnnnnnnnnnnnnnnnnnnnnnnccacacccagcccaagtgttctagctttctaaggaatgcagttaagtt
gcaaaattcccc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 446 335 NA intron:PLEKHB2:NM:001100623:4/8
0 chr2 86777959 86777960 1002071 0 + 1104685782245 NA NA SINE Alu NCAI tgagtagctgggactacaagcgcatgccaccacgcccagctaatttttgtatttttagtagagacagggtttcactgggttggccaggatggtcttgatc
tcttgacctcgtgatccacccgccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcctttttttttttttttcaagtacagat
gaggtcttgctacgttgcccaggctggtcttgaactcctgggctgaagtgatcctttcacctcggcctcccaaagtgctgggtttacaggtatgagccac
cacacccagcttaattatttcttaaattgtgcTATTGGCTGGGTGCGATGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCAC
CGAGGTCAAGAGATTAAGACCTTCCCGGGCAACCCGGTGAAACCCTGTCTCTACTAAAAATACAAATATTGGCTGGGTGCGATGGCTCGCGCCTGTAATC
CCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACctgaggtcaggagttggagaccagcctggccaacgactctggagactaaggcaggagaactgcttg
aacccaggaggcagaggttacagtgagccgagatcgcaccattgtactccagcctgggcaacaagagcgaaactccgtctaaaaaaaaaaattgtgcata
ttgctggccttttctttaccttcttatatagctctgtgtcttgtcagttggagcttagatgcacagagccacatcttttttggaagagactttggatact
atgatctcccaacctcttcaacttatagacaaggaaacaaaggcacagagaatgtcttacctaagg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr20 41758668 41758669 1002072 0 - 1104685521487 NA NA SINE Alu NCAI ctaaaaatacaaaaattagctgggcatggtgctgcatgcctgtaatcccagctactcgggaggctgagGTGGCTCACGCCTGTAATCCCAGCACTTTGGG
AGACTGAGGCGGGGAGATCACGAGGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCAT
GGTGCTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGGTCACACCACT
GCACTCCAGCCTGGCAACAGAGTGAGACCCCATCTAAAAACAAAAAAATCAACCACACAGTTCAGCAAATGTACAAAGAAACTGAACAATGATGATCATT
ATAGCATTGATGGAAATAGTAACAGATGTTTGACAATATAATGGTTAAATAAGATACGGCAAATTCAGGAATGTTGGAGATCTGAATACACATAACAACA
TGGAACGATATGTTAAATAGAAAAAGAAAGTTGTAAAAGAGTAAGACATCGTCTAATTTTAAGCCTGGTGTGGTGGCTCACGCCTGTAATCCCAGTATTT
TGGGAGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCAATTAGCCAGGCATGGTGGCACATGCTT
GTAATCCCAGCTACTCGGCAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCAAGATCATACCACTGCACTCCAGCCTGG
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGGAGATCACGAGGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATC
TCTACTAAAAATACAAAAATTAGCTGGGCATGGTGCTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGC
GGAGGTTGCAGTGAGCCAAGGTCACACCACTGCACTCCAGCCTGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGGAGATCACGA
GGTCAAGAAATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGCTGCATGCCTGTAATCCCA
GCTACTCAGGAGGCTGAGGCAGGAGAATCACTTCAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGGTCACACCACTGCACTCCAGCCTGGCAACAGAGT
GAGACCCCATCTAAAAACAAAAAAATCAACCACACAGTTCAGCAAATGTACAAAGAAACTGAACAATGATGATCATTATAGCATTGATGGAAATAGTAAC
AGATGTTTGACAATATAATGGTTAAATAAGATACGGCAAATTCAGGAATGTTGGAGATCTGAATACACATAACAACATGGAACGATATGTTAAATAGAAA
AAGAAAGTTGTAAAAGAGTAAGACATCGTCTAATTTTAAGCCTGGTGTGGTGGCTCACGCCTGTAATCCCAGTATTTTGGGAGGCCAAGGTGGGCAGATC
ACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCAATTAGCCAGGCATGGTGGCACATGCTTGTAATCCCAGCTACTCGGCAGGC
TGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCGGTGAGCCAAGATCATACCACTGCACTCCAGCCTGGccagcctgaccaacatggagaaa
ccccaattagccaggcatggtggcacatgcttgtaatcccagcta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MYBL2:NM:002466:6/14
0 chr20 48013280 48013281 1002073 0 - 1104685523492 NA NA SINE Alu NCAI taagataacaaccagaatcatgactgacacagtcacacaagaaacatcagacttttataaattgaatataatctttagaatattcacattaattggccgg
gcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaacatagggaaac
cctgtctcGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGC
CAACATAGGGAAACCCTGTCTCTACTAAAAAATACAAAAAATAAGCCAGGCTGGTCGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAA
AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAATTAAAAAA
AAAAAAAATTCACGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGTAGCATGAGGTCAGGAGATCGAGACCATC
CTGGCTAACACGGTGAAACCCTGTCTCTACTAAACAAAATACAAAAAATTAGCTTGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTCTGGAGGCTGA
GGCAGGAGAATGGTGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAA
GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGG
GAAACCCTGTCTCTACTAAAAAATACAAAAAATAAGCCAGGCTGGTGGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAAAATCGCTTG
AACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAAGGCCGGGCGCGGTGGCT
CACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGGGAAACCCTGTCTCTAC
TAAAAAATACAAAAAATAAGCCAGGCTGGTCGTGGGTGCCTATAATCCCAGCTACTCAGGAGGTTGAGGCAGGAAAATCGCTTGAACCCGGGAGGCGGAG
GTTGCAGTGAGCTGAGACTGTGCCATTGCACTCCAGCCCAGGCAATAGTGTGAGACTCTGTCTCAAATTAAAAAAAAAAAAAATTCACGGCCGGGCGCGG
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGTAGCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTC
TCTACTAAACAAAATACAAAAAATTAGCTTGGCGTGGTGGCGGGCGCCTGTAGTCCTAGCTACTCTGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGG
AGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAActactctggaggctgaggcaggaga
atggtgtgaacctgggaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaaca
aactcacattaataaaatatccagataaatttaactttagaagagattaacataaccaaaattatgacagataatattaggta Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr3 54000340 54000341 1002074 0 - 1104685207907 TGGCTGCTTAGGACTTACCAT GAGTCATCAGGTCAACAATCTAAAA SINE Alu NCAI gttaaacagtggaggccagcctggccaacatggcaaaacacaatcccaaattactGCTCACGGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCC
TCAGCCTCCCACATAGCTGGGGTTACAGGCGCCTACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGGTTTCACCACGTTGAAGGCTGGT
CTAGAACTTCTGACCTCAGGTGATCCACCCACCTCAGCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTCTTATATTTTTTGAGACAG
CATCCCACTCTGTCATCCAGGCTGTGGTGTAGTGGCCCAGTCTCAGCTCACTGCAACCTCCACCTCCCAGGTTGAGGCAATTCTCATGCCTCAGCCTCCC
GGGAGGCTGAGGCATGAGAATTGCCTCAACCTGGGAGGTGGAGGTTGCAGTGAGGCTCACGGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCCT
CAGCCTCCCACATAGCTGGGGTTACAGGCGCCTACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGAGGGGGTTTCACCACGTTGAAGGCTGGTC
TAGAACTTCTGACCTCAGGTGATCCACCCACCTCAGCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTCTTATATTTTTTGAGACAGC
ATCCCACTCTGTCATCCAGGCTGTGGTGTAGTGGCCCAGTCTCAGCTCACTGCAACCTCCACCTCCCAGGTTGAGGCAATTCTCATGCCTCAGCCTCCCa
aaaaataaataaataaaaataaaaaatgaaataaaatgaaaagtcaaacaattg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 937 647 NA intergenic
0 chr3 156868571 156868572 1002075 0 + 1104685603442 CCCACCACTTTTTAAATGCAG ATTTGCTGGGTGATGTGACTC SINE Alu NCAI ttgtgttaatattcttaataatcacatgccaacttccccaccactttttaaatgcagtaaccaaaactgaaccctttcatcaaaagagtcatgttggccg
agcgcgatggcacatgcctgtaatcccagcactttgggaggctgaggggggtggatcacctgaagtcaagagttgaagaccagcctggccaacatgTTTT
TTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAAACTTGGCTCATTGCAAGCTCTGCCTCCTGGGTTC
AAGCAATTATCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCACTCCTGGCTAATTTTTGTATTTTTTTTTTTTTTTTTTTTTTTT
AAAAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAAACTTGGCTC
ATTGCAAGCTCTGCCTCCTGGGTTCAAGCAATTATCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACAGGCACACGCCACCACTCCTGGCTAATTTTTGT
ATTTTTTTTTTTTTTTTTTTTTTTTcaaagagaatgctagtcaggaactgctaacactatttgcagtaacaatcaacaagttgagaactttcatctgttt
gttgctctctgtgaacctcatcggggcttctgccaagcctgccaatatttgcttcactttgctttgtttctgttcttaataacacttacccgagcttaga
acaagaaaaagcactggactt Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 587 404 NA intron:PLCH1:NM:001130960:1/23
0 chr4 25419663 25419664 1002076 0 + 1104685316592 NA NA SINE Alu NCAI tagacatcaataggaaagtcgtttttagtttcaagcttctgaaaggtgtaatgcatccaaggtagaagtttgaaaggggaaaaaaaggaaaggagaaaat
gtcacttaactattaaaaggaatgatctacaccaagttgactggtttgtaaaaacacagggcattcctcatttgcactctgacctggagatcctcattgg
gctcacagcctgctttctttttctttttcaaaaaaagcctatttgggcCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCA
GGAAATCGAGAACACCCTGGCTAACACGGTGAAACCCCTATCTCTACTAAAAATACAAAAAAAAATTAGCAGGGTGTGGTGGCGAGTGCCTGTAGTCCCA
CGCCTGTAATCCCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAAATCGAGAACACCCTGGCTAACACGGTGAAAC
CCCTATCTCTACTAAAAATACAAAAAAAAATTAGCAGGGTGTGGTGGCGAGTGCCTGTAGTCCCAgtgaggcaggagaatggcgtgaacccgggaggcag
agcttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaagcctatttgtatctttct
atgtactgggtaaattttcttttctttcttcttttttattttattttattttattgagacagaatcttgctctgtcgcccagactgcagtgcagtggcat
gatcttggctcat Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:KIAA0746:NM:015187:9/24
0 chr4 14444794 14444795 1002077 0 + 1104685313903 TTCGCTATTTTTCTATTCACTTGC AACGTGGGCCTACAGCATAG SINE Alu NCAI atatgtgtttcttcagactaaaacatcacagcagtgttgggttaaactattcttttaaatttgattttaaaattatatgtgcttttaatagaaaaattag
aaagcacagaaaatcaaaaataaggaaaaatcataacctacaattccagttccttgtggcaaccacagtttaactttggggcatttcctttctgacattt
tgtttcaatgcaaatttcgctatttttctattcacttgctttaagtagttaagactGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC
AAGGCAGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGACAATATGGTGAAACACGGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGG
GGGCGTGGTGGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGACA
ATATGGTGAAACACGGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGtagtcccagctacttgggaggctgaggcaggagaatcacttgaacc
tgggaggcggaggttgcagtgagccaagatcgtgccactgacagagtgagacttcatctcaaaaaaaaagtaaacaaaagactatgctgtaggcccacat
tcatatttgacttgctcacctaatgatgtgctataagtattaatgctttgagttgctattatttatcatccccacatgtctgacagcttttcccagaaag
gtaattcaac Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 495 363 NA intergenic
0 chr4 161813425 161813426 1002078 0 + 1104685734425 NA NA SINE Alu NCAI tagcaatattttgtgtatcttgattgccacaatatgccttgtacaacgaatgctttctttatcactggaaatagagttattagtacctttaaatctagtc
acattctagagccaatttttatttatttatttatttgagatggagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcggctcactgcaat
aaccgcctcccgggttcaGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCTCATGCCAGAAGAGCTGGCTAATTTTTGTATTTTTAGT
AGAGATGAGGTTTCACCATATTGGTCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAACCTCCCAGCGTGCTAGGATTACAGGTGTG
NNNNNNNNNNNNNNNNNNNNGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCTCATGCCAGAAGAGCTGGCTAATTTTTGTATTTTTA
GTAGAGATGAGGTTTCACCATATTGGTCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAACCTCCCAGCGTGCTAGGATTACAGGTG
TGagccaccacacccagccgggtatagagccaatttttaaacaactacaatgaattcagaacatataacctcaagattctgttcctgtagaaccacatcc
agtacttaaatttgggttagagttcaaccagagaagaagaagcagtaggagatgtatttaaacagatttattgcagtaacttggtgtgtgtgattgtggg
gctgttcaaaattcgtagag Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter RI sequence unavailable NA NA NA NA intergenic
0 chr4 129092284 129092285 1002079 0 + 1104685449200 NA NA SINE Alu NCAI gagtgtagtgacccgatctcggctcactgcaacctccgactcctggattcaagcgattctcctgcctcagcctcccgagcagctgggattacaggctcct
gccaccacaacaggctaattttgtacttttagtagagatgaggtttctccatgttggccaggcGGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCT
TGCCTCCCAAAGTGTTGGGATTACAGGCATTAGCCACTGCGCCCAGCCATTACTGTCAATTTTAGAACACATTTGTCACCTCAAAAAAAACTCTATACCC
TTCAGCTATCACCCTGTTTCATCCCCTCTCCTGCCAGCTGTAAACAACCACTAATGTACTTTGTTTGTACTCTATAGAGTTTTATCTGTATTTTCATACA
ATCTAGCCTCCCGTAATAGCTGGGACTACTGTCTTGTCGCCACCACTATATTTTTTTTTTTTTTTAGACAGGTTCGCTTGTACCAGGTCGGATTTGTTTA
TTTGTCAGGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCTTGCCTCCCAAAGTGTTGGGATTACAGGCATTAGCCACTGCGCCCAGCCATTACTGT
CAATTTTAGAACACATTTGTCACCTCAAAAAAAACTCTATACCCTTCAGCTATCACCCTGTTTCATCCCCTCTCCTGCCAGCTGTAAACAACCACTAATG
TACTTTGTTTGTACTCTATAGAGTTTTATCTGTATTTTCATACAatagaataatataatacatggtcttttgtcttgtcttctttcacttagtatttttt
tttttttttttgagacagagtctcgctatgtcaccaggctggagtgcagtggcgcaatctcggctcattgcaatctccgcctcccgggttcaagcaattc
tcacacc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:MFSD8:NM:152778:3/13
0 chr5 177538722 177538723 1002080 0 + 1104685059034 NA NA SINE Alu NCAI ttccttgtgcccaggagttcgaatccagcctgggcaacatatggagaccctgtctccaaaacaaaacacagaaagaaaaagaaaaaagacgatggctcac
gcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact
aaaaatacaaaTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATG
GTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTT
GAACCCCGGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTA
ACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCAGGTGTGGTGGCAGATGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGA
ATGGCGTGAACCTGGGAAGCAGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCATTCCAGCCTGGGCAACAGAGAGAGACTCTGTCTCAAAAAAAAAAAA
TGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTAACATGGTGAAACCCTGTC
TCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCCGGAGGC
GGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAATGGCTCACGCCTGTAATCCCA
GCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAA
TTAGCCAGGCGTGGTGGCGCACGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCCGGAGGCGGAGGTTGCAGTGAGCCAA
GATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGGGAGCGGTGGCTCACGCCTGT
AATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCAAGAGGTCAGGAGATCGAGACCATTCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATAC
AAAAAAATTAGCCAGGTGTGGTGGCAGATGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAAGCAGAGCTTGCAGT
GAGCCGAGATCGTGCCACTGCATTCCAGCCTGGGCAACAGAGAGAGACTCTGTCTCAAAAAAAAAAAAgaggctgaggcaggagaatggcgtgaacctgg
gaagcggagcttgcagtgagccgagatcgtgccactgcattccagcctgggcaacagagagagactctgtctcaaaaaaaaaaaagttgaaatttatcaa
ctgccttgttagtaggtattgataagactggtatcttttctcattttatctatttatgtaatgaattatattgagtttc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr6 122203475 122203476 1002081 0 - 1104685230111 GCCCAAGTAAATGAATGACCA GCGTGCACTTTTCCACTGTAT SINE Alu NCAI gttcacttgtctggattacctacagtggacaatctacatctcttccactaatttccctttagaatccatattccatgcatataagtgacttgtaaaaatg
taaatctgtcatcttactctttgattaaaaatattatatggtttctcattacttttagaataaaacctagactccctaccacagcctggaaatacttcca
tggcctatgcctccatctccatcattctgggcacattggctctccctctgttctgaaaacacagcaattcattgtggccaacagacctttgcatAGGGAA
GAACTCCCTGAGAAGGTAACATTGGAGCTTAGACTTGAATTTGAGAAGGAGCCACACTGACTTATATTTGGAGGAAGAGCTTTTCAGATAGATGGAGTAG
CAGGGAAGAACTCCCTGAGAAGGTAACATTGGAGCTTAGACTTGAATTTGAGAAGGAGCCACACTGACTTATATTTGGAGGAAGAGCTTTTCAGATAGAT
GGAGTAGgctctaaagttcctgctttgacccgttattatacatgattttattcacctgaagttttgtcacaaatcattactatcagaaaatggtcattca
tttacttgggcccagaaccaggctttaatctatactacaatttattaaaggcaaagaaaatgaagtatttttttcttagtctattaactaacgtggtctt
actcatgagcctgtccccaaccacaccagctagtagcaaggaaaagtgaaaaagaaattctatgtagtatatttcactttaaaacttaattcaatccaag
g Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1164 1060 NA intergenic
0 chr8 73257693 73257713 1002082 0 + 1104685425118 TCAAGTTTTTCCCCAACTCAG TGTATTTCAAGTGTCCATTTCTCAA SINE Alu NCAI cagtgtgtgtcaacctatatttgcattgttttccaaaatgagtaaattttgttttattaagtttgttttaataaggaatatatgtacctctcacttttga
gttctttaaatcaagtttttccccaactcagagatttctagatattctctctctctctctctctctctctctctctctatatatatatatatatatatat
atatatttttttttttttttttttttttttttttttttgagacggagtctcgctctgtctcccaggctgaagtgcagtggtgcaatctcagctcactgca
agctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgctaccacgcccggctaattttttgtNNNNN
TAGTAGAGACGGGGTTTCACCGTGTTAGCTAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCG
TGAGCCACCGCGCCCGGCCGATTTTTTGTATTTTTNNNNNagacgaggtttcactgtgttagccgggatggtctcgatcttctgactttgtgatctgccc
acctcagccttcaaaaccttttaaatgatgtttacactagaggagttctgctcatacaatattgagaaatggacacttgaaatacaaaaatcaattttct
attttgcactattttcctacatgagtctaaaatatgtattatcttctctatgctaattagatgttagttagaatataagagaatacaattacaactcaag
ttttcttctattgccttatattttgtttttatagttttgtctatttaaagtcagaattttaaaaagacagagagaagcctgacaaataatcccttagtca
tacatcaattaaaagttctttttgttctgccgtca Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 576 442 NA intergenic
0 chr9 19269254 19269503 1002083 0 - 1104685686242 NA NA SINE Alu NCAI ttcaccctctaggtattttaaaccattgtttctgggaatcttgttaaaaatagatttttttttcttctgaggcagggtcttttgctctgttgcccacgct
ggagtgctacagtggcacaatcggagccactcctgggctccagtgatcctcccacctcagccttctgagtagctaggactacatgtgcatgccaccacac
cttgctaattttttttttttttttgtcttgagaaggagtttcactctgttgcccagactggagcccagtggcacaatcttggctcactgcaacctccacc
tcctgggttcaagtgattctcctgcctcagcctcccaagtagcaggaactacaggtgctcgccaccatgcccaactaatttttgtatttttttagNNNNN
AAGGAGTTTCACTCTGTTGCCCAGACTGGAGCCCAGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCC
TCCCGAGTAGCAGGAACTACAGGTGCTCGCCACCATGCCCAACTAATTTTTGTATTTTTTTAGTAAAGANNNNNtttcaccatgttggacaggctggtct
tgaactcctgaccacaagtgatcggcttgcctccgccccccaaagtgctgggattacaggcgtgaaccaccacaccgggcccttgctcatttttattttt
attttttgtgaactcctggcctcaagcaatcctcctcccacctcagcctcccaaagcgttgggattacaggtgtaagccaccacactggaccagaataca
gattgtgattcagtaggtctggaatagtgcctaagtttctgagtttctaacaagcttccaggtcttttggacaatactggtccatgggctacaatttgaa
tagttaggcccttaattatgttccccttcccttaaagtcaagcttctgggggggcagagtggagggggc Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intergenic
0 chr8 128925246 128925247 1002084 0 - 1104685372002 NA NA SINE Alu NCAI gaggcagagcttgcagtgagccgagattgcgccactgcCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCAACTCTACTAAAAATACAAAAA
AAATTAGCCGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGC
CGAGATTGCGCCACTGCACTACAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAATAATAATAATGTAGACATGCATCAATAATTCAGAGGCT
AGGAGGCTCCCCAGAGAAACCATGAAGAATATCAACAATCCCCTGCCACAGGACTTAGCAGCTTTGGAAGGCATCGTCCAAGCAGCCACTCTGGAAAGAA
AGGTGCTTCTCTCAAGCAATCTGTACAAAGCTCCCTGTGAACACATCACATCTAGTCTGCCCAGGAAGACAAGGGATTCCCACCTCCTATTAAAAAAACA
GCCAAACAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGAGAGGGTGGATCACAAGGTCAGGAGATCGAGACCCTCCTGGC
TAACATGGTGAAACCGCGTCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAG
GAGAATGGCGTGAACCCGGGAAGCGGAGCTTACAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCAACTGAGCAAGACTCCATCTCTAAAAAAA
AGGAGATCGAGACCCTCCTGGCTAACATGGTGAAACCGCGTCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCA
GCTACTCAGAAGCTGAGGCAGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCA
AGACTCCGTCTCAAAAAAAACAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCAACTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGT
GGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAACGGCATGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCA
CTACAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAATAATAATAATGTAGACATGCATCAATAATTCAGAGGCTAGGAGGCTCCCCAGAGAA
ACCATGAAGAATATCAACAATCCCCTGCCACAGGACTTAGCAGCTTTGGAAGGCATCGTCCAAGCAGCCACTCTGGAAAGAAAGGTGCTTCTCTCAAGCA
ATCTGTACAAAGCTCCCTGTGAACACATCACATCTAGTCTGCCCAGGAAGACAAGGGATTCCCACCTCCTATTAAAAAAACAGCCAAACAGGCCAGGCGT
GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGGAGAGGGTGGATCACAAGGTCAGGAGATCGAGACCCTCCTGGCTAACATGGTGAAACCGCG
TCTCCACTAAAAATACAAAAAAAAATTAGCCGGTCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAGGAGAATGGCGTGAACCCG
GGAAGCGGAGCTTACAGTGAGCCGAGACCGCGCCACTGCACTCCAGCCTGGGCAACTGAGCAAGACTCCATCTCTAAAAAAAcactaaaaatacaaaaaa
aaattagccggtcgtggtgg Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
C:Comparative personal genomics:Venter NA NA NA NA NA intron:PVT1:NR:003367:1/9
0 chrX 145144949 145144950 1002085 0 + 1104685543994 CCCTACAAAATTTCCCTCCAA CGAGCGTTTTTGTGGTAGAAC SINE Alu NCAI atttatcttattccaaatagcacacgagactaaatgttcactcacagtagtgtatcttactataatttTTTTTTTTTTTGAGACAGGGTCTCTCTGCTGC
CCAGGCTGGAGTGCAGTGTTGAAATCTCAGCTCACTGCAACCTCCTTCTCCTGGGTTCAAGCGATCCTCCCACCTCAGCCCCCCAGGTAGCTGGGACCAC
AGTCACACACCACCATGCCTGGCTAATTTTTTTGTTTGTTTTTTGTTTTTTGTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGG
TGCAATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCATGCC
GCATGGTGGTGTGTGACTGTGGTCCCAGCTACCTGGGGGGCTGAGGTGGGAGGATCGCTTGAACCCAGGAGAAGGAGGTTGCAGTGAGCTGAGATTTCAG
CACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAACAAAATTTTTTTTTTTGAGACAGGGTCTCTCTGCTGCCCAGGCTGGAGTGCAG
TGTTGAAATCTCAGCTCACTGCAACCTCCTTCTCCTGGGTTCAAGCGATCCTCCCACCTCAGCCCCCCAGGTAGCTGGGACCACAGTCACACACCACCAT
GCCTGGCTAATTTTTTTGTTTGTTTTTTGTTTTTTGTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCAC
TGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACACACCACCATGCCgaattgattgcctttg
tatttaggttgttagaagctctgtatatattctggatattaatactttggct Venter - Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13. PMID:19439515.
- The diploid genome sequence of an individual human. Comment in: PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254. PMID:17803354.
E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter NA 60 1585 1400 NA intergenic
0 chr3 194837674 194837675 1002086 0 - CTCTTGACACATCTGTTATATT GCCTACATCTAGTATGTATA SINE Alu AluYb8 tttaaatattactaatattaagacatataaagccaaatatcttcctttataacacatacagtaactcataaatataatgtacttatatttattaatattt
ataatgaactaaaatagtcaaataatattgcttaagacattacttggaacatgtaagattacataaaaaatataaatgcctacatctagtatgtatatat
gtgtatgtgtacatatatacacataatttttaggaagctaagctgcttctttttttgctaattggcaagttcactatcaatttttcacatacccgtggca
gatgatcttgcgtattataactggcatcataatcagagagaacatcaagaacttcagaatacatgtcaatcaaagatttctgtAAAAATTTTAAAAAGTT
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGG
TGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGT
GAACCCGGGAAGCGGAGCTTGCAGTGTAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATTTTAAAAAGTTtaattataaaacagtaaaagtaaagaaaaaaatataacagatgtgtcaagagaaaaaagtgataaatt
caaattgtttttccataatcattgtactgttttctcaaattacataaatacatcttcatcgtaaaaactaaaacggtacagattaaaagtccatttctca
ttcagtttatttagatacaatgatttaataaagtaaattaattcaggatttcctaacattctaattaaataagatggaaattattacttaatactgatga
gctaatactgaatgcaagaaaagaccattaacaccaaaaaggcaaaaaaaaggtggtcaggtaaccaactgacaatgaaattattctttgctaagtttga
ggcatgcatgagaga Other - Gallus GN, Cardaioli E, Rufa A, Da Pozzo P, Bianchi S, D'Eramo C, Collura M,Tumino M, Pavone L, Federico A. Alu-element insertion in an OPA1 intron sequence associated with autosomaldominant optic atrophy. Mol Vis. 2010 Feb 10;16:178-83. PMID:20157369.
E:Insertion-specific detection:PCR NA 52 604 274 ADOA intron:OPA1:NM:130837:9/31