0	chr11	20525767	20527754	3000001	0	+	PRMT3; RIP_SVA_chr11_020_01	NA	NA	OTHER	SVA	SVA_E	ttgtttattcctcacagtctctctgatcctggcctaaaagaactgggccacaatctgatgatcaaaacaactggtgcaggacaattgctttgatttgctg<br>ttggcttcaaatctggattaatggttgcctttctaattaagcctctgagcacaggatttaaaaactcacaggtgtcaggtccttaaaatggaccagcccc<br>tcctactctgtctcaaggctccttttctattacataaaaaatattttttaatatcctttttactatcctgaaattgaattcataaataatataagccact<br>tatgcacatgattttaaaaatcattataatgttcttagtacattatataggagacataagaagaatctattacaaaatacatatttt<font color="green"><u>AATACAGAAATGT<br></u></font><font color="red">CTCTGTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCTCTCCCTCTCCCTCT<br>CCCTCCCTCTCTCCCTCTCCCTCCCTCTCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCC<br>CTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGTCGCCAGGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGT<br>TTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCAC<br>TCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTAAAACCACCTCCCACCCGCCTGCCTTGGCCCCCCCAAAGTGCCGAGA<br>TTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGC<br>CCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAG<br>CGTCTCTGCCCGGCAGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTG<br>TCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTAGCAACCGCCCCGTCTGGGAAGTGAGGAGCCCCTCC<br>GCCTGGCAGCCACCCCGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAACCCCCGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCC<br>ATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGA<br>CAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTA<br>ATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTGTTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAATTAAAAAAAAAAA</font><font color="green"><u>AATACAGAAATG<br>T</u></font>ttgattacatcctaactagagacataatgaagtactcagaagtctacacctacacatagaatcatggatatacttacacatagaaccacatgctacacc<br>tatgcgtagaatcatggatatacctacacatagaaccacgtgctatacctatgtgtagaatcatggatatacctacacatagaaccacatgctacaccta<br>tgcatagaatcatggatatacttacacatagaaccacatgctatacctatgtgtagaatcatggatatacctacacatagaaccacgtgctatacctgtg<br>cataaaatgatggatatacttacacatagaaccacatgctacacctatgcatagaatcatggatatacttacatatagaaccacatac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr12	68881132	68883844	3000002	0	+	CNOT2; RIP_SVA_chr12_068_01	NA	NA	OTHER	SVA	SVA_E	aatatatacacatataatatatacttgcctaatttaatcaatatcctaaaaataaacgtttatctgtcctacatatgtaacatagtttatgtaataattt<br>tcctgttcttagacatttaaattatttcaaaattttaattataagaaacagtgagcaaaacatgatgatataagaaattttattatcatctctacttatt<br>tccataaaaaatcctgtaaatgcaactattgggtaacagaatataaatatttcaagacttctcatagtttactaaaattacactcaaacagtagaaatag<br>taaatatgtgggtaagtatataaataacaaatatatgtatatgtttctttccttattgaaaacacatatgactgtttaaagc<font color="green"><u>AAAAAAGTATGACACTTC<br></u></font><font color="red">GCTCTCCTTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCA<br>AGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGC<br>CACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTC<br>GGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAAC<br>CACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCC<br>ACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGA<br>GCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCT<br>GTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTC<br>TGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTC<br>CGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGA<br>GCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGA<br>GGGAGGTGGGGGGGTCAGCCCCCCGCCGGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGG<br>AGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCT<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCT<br>ACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCGGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGA<br>GGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGG<br>GCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAG<br>ACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAA<br>CATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAGGATGTGCTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCA<br>CCACTCCCTAGTCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACTTTTGTTCACTTGTT<br>TATCTGCTGGCCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATAAATT<br>AAAAAAAAAAAAA</font><font color="green"><u>AAAAAAGTATGACACTTC</u></font>actaatattaatgggtttataacaaatgtagatgtaatatatatgacaataatagcactaaggagaagg<br>ggtaaatggaatttgctcttgtgagttttctatatttcatctggactaattcaatataactaggtagactgggattagctaaggatccactttgtaaaca<br>ctagaaaaagtaaaaaataatgaaaaatgtagctacaaagtcaacagagaaattaaaatggaatatgaaaaaatatttgattaacataaaaggaagaaaa<br>tgaggaacaaaaaaccaaaaaaatttggtaagacaaatagataataaacagcaaaatggcagagctttaaatacaatcatatcaataagtatatcaaatg<br>caaataaactaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr13	42437810	42439447	3000003	0	+	EPSTI1; RIP_SVA_chr13_042_01	NA	NA	OTHER	SVA	SVA_F	aaaactcatctcaaagtttaatacattctagaattttcttttctacccccaagtccctcccacacacacatacctgactaaccctagataatgcatataa<br>caggaagtcaaaatgagaatcctgctcattttctgctaaggcttcaagacaacagatgccgagcgcttcaaattccaaagggaggtaatggcccctcaaa<br>gcaggatctgcaaggaggtaactgaaacctaccttggggaaccttaactaacttcagcctataaaagaggttggttaggtcaaagggaggcagaaatctg<br>aggaaagatgtcattctgaattctatgtcttctgtgttttgaggaaggagaaatcttcacaccagatgagcaggagaagtttaat<font color="green"><u>GAAAATCAGCTGGAG<br></u></font><font color="red">TCCCTGTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCGTCTCCCTCTCCCTCGTCTCCCTCTCCCTCTCCCTCCTCT<br>CCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTC<br>GGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCGAATGCCTGCAATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGAC<br>GGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCG<br>TTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTACGCCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGT<br>GCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCC<br>TGGCTGCCCAGTCTGGAAAGTGAGGAGCATCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATTTAGGAAG<br>TGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAAATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGA<br>GACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAG<br>CCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTAAGGAGCGTCTCCGCCCGGCAGCCAC<br>CCCGGCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCCGCCCGGCCACCACCCCGTCTGGGA<br>GGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATG<br>GTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGAATCCTGTTGATCTGTGA<br>CCTTACCCCCAACCCTGTGCTCCCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTT<br>GAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAA<br>CCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATC<br>AATAAAAAAATAAATTAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATCAGCTGGAG</u></font>acctcaacctgcatttttaagagtctgagggtcttattggattcatg<br>cctagaacagttagagcctaaaggtataaggctgttgtccattggccactgagatgagtcctcaagaagaggtagctacattacaaatggcccacattca<br>cagtttatgaaaagaaagaatgcacaagtatttcctgtacttttaatgtgattctcatgaaagagaatgccaacctaaagccatctaaagggacttgcct<br>atgagggccatgtcaagaacaatggaaccctaaaaggagtctaccaagagccaacagtgaggccaagccctgccgacaggagaggaaatcgtctgtatca<br>gggaaatccaggtgggagatgggtagcagagagtgggg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:EPSTI1:NM:001002264:3/13	
0	chr13	48849416	48851857	3000004	0	+	FLJ12577; RIP_SVA_chr13_048_01	NA	NA	OTHER	SVA	SVA_F	aaaagttgaatagtagatagatagatagatagatagatagatattaaaattgaaaagcaccactgacatccttttacagctggcttacctcaaagtctat<br>cagctgcaggtcagctatcagtgtcactagcaggccactgctgtagagttcttgtgctagctgagccactgcttctgttgggggttctttctcgtttgta<br>ccacacagaatttctttcattgcttgcagtgatttagacacttcttctgaagcctagtgaccaaaacgtatgctaacggttaaaagaataaaaatgttta<br>ggccataaacaaacaaacaaataatccaaaaaaccacttcttggtcttgggctctgtttatttataatgaatggcacagtt<font color="green"><u>ACAAACAAACAAAAACAGT<br></u></font><font color="red">GAGGGGAATCACCATGTTTGGGTGGACCTAGTTTCTAATGGCTTGCATTTACATATCAAAGGTTGCCAGCCTGGCTCTAAGAGCCGGGGCTATACAAGAA<br>ACTTTTTCGGCTCTCCCTCTCCCTCTCCCTCTCCCTCTGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCCAGTGCCTGCCATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGA<br>GACGGGGTTTCGCTGTGTTGGCCGGGCAGGTCTCCAGCCCCTAACCGCGAGTGATCCCGCCAACCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGT<br>CTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCA<br>AAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCG<br>CCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGA<br>GATGTGGGGAGCGCTTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCG<br>GCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCGTCTGAGAAGTG<br>AGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGACCGGCAGCCACCCCGTCAGGGAGGGAGGTGGGGGGGGGTCAACCCC<br>CCGCCCGGCCAGCCGCCCCATCTGGGAGGGAGGTGGGGGGTCAGCCCCCCCGACCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>ACCTGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCGGGAGGTGAGGGGTGCCTCTGCCCGGCCACC<br>CCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCC<br>TCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGAGAGGGAGGTGGGGGGGGT<br>CAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCA<br>CCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCAGGAAAGGTGGGGAAAAGATTG<br>AGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTG<br>TTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTA<br>AACAGATGCTTGAAGGCAGCGTGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCT<br>GCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACC<br>CAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>ACAAAAAAACAAAAACAGT</u></font>aagcactgccttttttattttggaaaatattataagtat<br>tataaaatttatttatataaaacagctctttggtatttctacttagtcaacatacactaaataatcttttttttttttttttagatggagtcttgctctg<br>ttgcccaggctggagtgcagtggcacaatcttggctcactgcaagctccgcctcccaggttcatgtcattctcctgcctcagcctcccaagtagcgggga<br>ctacaagcacccgccaccacgcccggctaatttttatacttttagtagagacagggtttcactgcgttaaccagatggtctcgatctcctgaacttgtga<br>ttcgcccacctcagcctcccaaagtgctgggattacaggcgt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:CAB39L:NM:030925:2/9	
0	chr14	34577467	34579258	3000005	0	+	C14orf24; RIP_SVA_chr14_034_01	CAAAAACAACCATGTCAGTGAGAATC	CATCATTCCTACAACTCATGGCTC	OTHER	SVA	SVA_F	taaacaggtggcaacaaaaccaggaaatttgctggagctaaagccccataatatgcatattaatgtaacagtaaaattaatatgttagtattttagtgaa<br>tttaggaaatctaaacagcaaatcataatataaaataaatttgaatgaatttattttacaggtagctctggtacatatacacatacaagcaaatatttca<br>gtaaaaaatggaacaaagtattgaaaattaaaatgtgaaggaatttcaacttgatgcttatgtagagtaaaatattttagtatttgaatacagagagcag<br>ccagagaatttgaatgaggtctaacaaaaacaaccatgtcagtgagaatcatggttaaataacaatataattactgatcctcctc<font color="green"><u>AAGACTTACGAATAG<br></u></font><font color="red">AGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATT<br>GCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCC<br>AGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCG<br>TCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTC<br>TGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGC<br>CCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCGGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCACCTGGCCAGCCG<br>CCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTG<br>CCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCTAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTG<br>AGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGC<br>CTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGTCGGCCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGA<br>ATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGC<br>ACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAAT<br>GGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGA<br>CACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATG<br>ACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATTAAAAAATAAATTTAAAAAAAAAATACAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTA<br>CGAATAG</u></font>ttattgataaatgaatagctattggtaaagccaagtaaatgatcatattcaaaaccagaaggccatcatcacagctcaagtctacatgatttg<br>atctctttatcattgtcattctttggattcactagattagtcatcatcctcaaaattctgccccaagttctaattacgttccaaacatttaggggttaca<br>tgaagcttgaacctactaccttctttgcttttgagccatgagttgtaggaatgatgagtttacaccttacatgctggggattaatttaaactttacctct<br>aagtcagttgggtagcctttggcttatttttgtagctaattttgtagttaatggatgcactgtgaatcttgctatgatagttttcctccaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr14	64430150	64433293	3000006	0	-	SPTB; H14_E_66; RIP_SVA_chr14_064_01	CTACCAGTCTTGCCTTCAGCTT	AAAACTGTAGGATTGGCCAGAA	OTHER	SVA	SVA_E	gagggtgcatagctttcattacatacaggagtttgttacccagaaagagtaagaaccattcttatgaatcactacttctacagcaatgtttttactttgt<br>cctaactcattacttgcaaaggaattttttaaagtaccagtagttgtttcatagacaacagaaccagtcaaagaatcatttaggatagttcctgatgcta<br>cttccaaacctctaccttgtccccactttgctaccagtcttgccttcagcttaattgaagaacaaaataatgagatcacacacatgatgtacaaagacct<br>caccatctgccacatacatcttccttttcacgccttcttttggaggcctctgctattttcacaggagatttttatccagattcccactat<font color="green"><u>GAAAATTCTT<br></u></font><font color="red">GTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCA<br>TCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTT<br>TTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCTGGGATT<br>GCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTG<br>GCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCT<br>CTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTG<br>AGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCGGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGCGGGGGGGGGGGGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGC<br>CCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCC<br>CCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCC<br>CCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTC<br>CGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCC<br>GGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAAT<br>GGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTT<br>TCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCC<br>ACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCT<br>TAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCC<br>ACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAGAGC<br>ACGAAGTGAGAAGAAGCTGGCCTTGCCCTACTTGGATTATCAAAGGAAGTAACAACTCTGGACAAGGAGAGATTGCTCTGCCTGGTGATAGCAGAGGAGT<br>CTCAGAACCAGAGGAGGAGGTGGCACATGGCTTTATCCTGTGCACCTCTCCCTCACTTAACAACTTTCATTCTTCCTGAAAATGAAAGCCTGCCATATGC<br>TTGCTGAGCTGTGGACTTTTCACGAGCCCAAGTGAAAAGCTGTTAAATGAAAACATATCTTTTTTAAACATTTTTAGGGAATAAATTATGATGCTCTCCC<br>TTCCAACTCAAGACACTCAAATAATCCTCACAGATAGAAAAATGTATCCATTGAACAATGAGAATGAGTTTATGTAAGTAATAACAATCGGAGAGTAAAT<br>AAATGCAGTTTGCTCATCAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTCTT</u></font>taatgaacccttctttctcatgccaacatttctggccaatcctaca<br>gttttagataagaatttattttaagaggaataaaatctcttataacagtgccaatttgaagtgctagatccattagcttttcctgataaactttagaaaa<br>agggaatgggaagtaaacttctggcttactattaaaaacctgcttcttggtcagttttctgcaaaagctgtctctccttcttcctctctctcatggatta<br>ttaataatttttctgtatctttctcctttctatcgtattccctttgggattcactcttccccagtgatttaatttagttaatgttctaattagtgcaact<br>tccacccaggagattccttgagctttcacatcagtgcttttcca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3375	225	NA	intergenic
0	chr17	18731879	18732888	3000007	0	-	PRPSAP2; RIP_SVA_chr17_018_01	GTTAAGCCAGCCAGCTACTGGG	GTTGCCTCCGGCATAATCACATGG	OTHER	SVA	SVA_F	taccatacaacaagcactaaataataactacttagcaaatgaacaaaaaatgattaatttgaataatttagtacagttgcctccggcataatcacatggc<br>tcagctgtatctacaggaaagcctaatttatccaacactctcaggaagtaaggcagtaaaatatatttccatttgggcactttcattatttttgctggca<br>gtctttctaaactttttcatgtatttccttgtctcatcaaacatcatcaaacattaccaaacccagccaagaaaagacagaaccaagaaaacagttaata<br>acaattaaaggacctaaaagaaaggactctaacaaaaacaagtctattgtctctacggaggttaaaatgggaaattatatacaac<font color="green"><u>AAGAAAGAACAAGTT<br></u></font><font color="red">GAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCC<br>CCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGACCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTC<br>ATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTA<br>GAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGT<br>GCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATACTTGAAGGCAGCATGCTCGTT<br>AAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCAC<br>TTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAA<br>AAAAAAAAAA</font><font color="green"><u>AAGAAAGAACAAGTT</u></font>attatgaaaaagaaccaaaaataaatctagggggaagaagttattatggtctaaagaaacccagtagctggctgg<br>cttaacagcagaataaacacaactttaagaacaaaccagggaagatcaagacaaggaatttccccagaatgctatatataagtatgcaaaaagtaaaata<br>agtttttaaaagttatagagactagatccaaaattttcaggacctaatagttcccaaaggaaaataataaaagaaatagaagggatgaaatacttaacag<br>attaaaaaaaattcccaaagatggccaggcacggtggctcatgcccataatcccagcactttgggaggccaaggtgggcagaacatctgagccaagacca<br>gcctggccag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:PRPSAP2:NM:002767:7/12
0	chr17	61695520	61696576	3000008	0	+	PRKCA; RIP_SVA_chr17_061_01	NA	NA	OTHER	SVA	SVA_F	gctgttaagaaaagctgaatcttgtctaaaaacagtcccatctataatattaagtctggccctagggtttgtgttaataaatggctatagtgtaaaacaa<br>cctgaaacttctgctttgccaattctattctagatgtggatgagtcagggttctgggttgcaagaaacagcgagtaattggcaaacgtgagcagaaaagg<br>aatgcactggaaggaaatcagggagctcatgtattcttcgagaaggctggagaatcaggcttggaaaaggcagagccaagggaggtgtgggagcaggaag<br>cccagcaaggggctgcacagacagcatgactctcccccttcttttttaatagcgtttttttatttgtgcagtaagccattggctt<font color="green"><u>AAAAAATGTTTTAAG<br></u></font><font color="red">TGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCG<br>CCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGA<br>GCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCGGCCCCCCGC<br>CAGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGGGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGATGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGAGAAGTGAGGAGCCCC<br>TCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGTCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAG<br>GTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTC<br>TGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCGGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCA<br>AGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAG<br>GCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCTCC<br>TCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAATGTTTTAAG</u></font>cattttaaagttacagtttagtagcatt<br>aagtacattcacattgttatgcaaatatcatcaacctctatctctggatttttttcattttcctaagctgaaactctgtatccattaaattctaactcct<br>aactcctcatttgccccttctcccggctgctggtaaccaccattctactttctgtctctatgaatttgactattctaagtactgatgcaagtacttagta<br>taagtactaagtactgatgtgatgtaagtacttagtatgagtactaagtactggtgtaagtacttagtataagtattaagtactggtataagtacttagt<br>ataagcattaagtactggtgtaagtacttagtataagtactaagtactggtgtaagt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr17	26329734	26332540	3000009	0	-	RNF135; RIP_SVA_chr17_026_01	CAAACATCCACGAGCATCAAGACC	CTCTGATGCATTCTTCAGTATGTC	OTHER	SVA	SVA_E	tgcaagagtcacagctttactgggcttggggtgccccctaatgcagatacggcttagatcacaacgcccaagtcctttcaaattcctggaaagccttccc<br>aagaaggacaggtacaaacaagcccagactgtgaagactacaataaataactaactcttcaatgcccaggcactgacaaacatccacgagcatcaagacc<br>attcaggaaaacatgaccccaccaaactaactaaataagtcaccaagagccaattcaggagaaacagaaatatgtgacctttcagacagagaattcaaaa<br>tagctgatttaagaaaactcggagacattcaagataacagagaaggaattcagaattctatcaggtaaatttaacaaaatgatt<font color="green"><u>GAAATAATTAAAAATC<br></u></font><font color="red">GGTTAAGAGTCATCACCACGCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCTGAGCCAAAGCTGGACGGTACTGCTGCCATCTCG<br>GCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGTCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTT<br>TGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGA<br>TGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTC<br>CCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCTTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCC<br>CTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCACCATCCCATC<br>TAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCT<br>GGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCC<br>CCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGCTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGC<br>CAGCCGCCCCATCCGGGAGGTGAGGGGCTCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGA<br>GGTGGGGGAGTCAGCCCCCCGCCTGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT<br>GGGAGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCGGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGTCGGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGG<br>CGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCAGCTCATTGGGGATGGGCCA<br>TGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACAT<br>GGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTAGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATG<br>TGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAC<br>TCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGA<br>CCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAAAAATAAAAAATAAATA<br>AAAAAAA</font><font color="green"><u>GAAATAATTAAAAATC</u></font>aagcagaaattctggaatcgaagaatgcatctgacatactgaagaatgcatcagagtctctcaatagcaaaatcgat<br>caagtattagaaagaattagtgagcctgaattcagcctatttgaaaatacacagtaagaagagacaaaagaaaaaagagaatgaagcatgcctacaagat<br>ctagaaaatggcctcaaaggggcaaatctaagaattattggccttaagaggaggtagagaaagaaatagtggtagaaagtttattcaaagaaataatagc<br>atggaacttcccaaatctacagaaagacatcaatatctacatacaagaaggttataaaacaccaagcagatttaacccaaagaagactatgtgaaggcat<br>ttataat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:RNF135:NM:197939:1/4
0	chr19	57787835	57789420	3000010	0	-	ZNF137; RIP_SVA_chr19_057_01	NA	NA	OTHER	SVA	SVA_D	agatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccctgtctctattaaaaatacagaaatagccgggcttggtggcacatgcc<br>tgtaatcccagctgctaggcaggttgaagcaggagaatcgcttgaacctgggaggtgggggttgcagtgagccgagatcgcaccattgcactccagcctg<br>ggcaacaagagtgaaactctgtctcaaaacaaaaaacaaaaaacaaaaaaaacagaacaaaaggccaggtgcggtggctcatgcctataatcccaacacc<br>tggatggaggctgaggcaggcggattgcttgagaccaggagttcaagaccagcctggccaacatggtcatatcccatctctaat<font color="green"><u>AAAAATACAAAATTAG<br></u></font><font color="red">TCCCCTCTCCCTCTCCCTCTCCCCATGGTCTCCCTCTCCCTCTCTTTCCAGGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACGGTACTGCTGCCATCTT<br>GGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTGAGTGCCTGTGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTATTTTT<br>TTGGTGGAGACGGGGATTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGGGAGTGATCCGCCAGCCTCGGCCTCCCAAGGTGCCGGGATTGCAG<br>ACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGG<br>CCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCACCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGA<br>GCCCCTCTGCCTGGCTGTCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCTGCCACCCCGTC<br>TGGGATGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAGCCACCCCGTCTGATAAGTGAGAAGCCCCTCCGC<br>CCGGCAGCCGCCCCGTCTGAGAAGTGAGAAGCCCCTCCGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCTCCCGGCAGCCACCTCGTCCCG<br>GAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCACCCCATCTGGCAGGTGAGGGGCGCCTCTACCCAGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCTCCCTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCAGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCGCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCACCACCCTGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGC<br>GGTTTTGTAGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGTGGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCA<br>TTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTTATCGGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTATCCACT<br>CAGGGTTGAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAG<br>GTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACT<br>ATTGTCCTGTGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATGATCAATAAAAAAAATAAAAATAAAATAAAAATAAA</font><font color="green"><u>AAAAATACAAAATT<br>AG</u></font>ccaggtatggtgacatgcatctgtaatttcagttaggttgggaggctcaggtatgtgaattgcttgagcccagaaggtggaggttgcaatgagctgag<br>atcacgacactgcactccaacctgttcaacactctgtctcataaaaacaaaatgaaacaaaaaacacaaaaccacaagcgcagctggaaacacttgtcag<br>tcagtgtgatgctttctatctcatatcctgggccatggtgacaattccgctcagggcctccaggggcatctctgcctagagcaggatgatgttcaatctt<br>attagtcaaagtgttcttcatgaattttctggttttatgtaaaaccactccataagggagtctctaagaagctgtccatgacaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr19	58380990	58383763	3000011	0	-	AK09261; RIP_SVA_chr19_058_01	NA	NA	OTHER	SVA	SVA_E	tcttgtctattcacacacacacacacacacacacacacacacacacagaaaataaagcctttctttctcatctactctttcaactttaaaacaaaaaata<br>aggctgggcatggtggctcacgcctgcaatcccagcactttgggaggctgaggcaagcagatcacctgaggtgaggagttcgagaccagcctggccaaca<br>tgatgaaacgtcttctctactaaaaatacaaaaattagctggccgtggtgatgtgcacttttaatcccagttacttgggaggctgaggcaggagaatcgc<br>ttgaacccaggaggcagagcttgcagtgagctgagatcacaccactgcactccagcctgggtgacacagctagactccatctcaaaaaaaac<font color="green"><u>AAAAACCC<br></u></font><font color="red">GGTCAAAAATTTAATCTGGATTACCCAGCATCTCCTATAAGAAACAAAGGGGCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCC<br>CTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGC<br>CTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTTGGTGGAGACGGGGTTTC<br>GCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCA<br>GTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGC<br>AGCCTCTGCCCGGCCCCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAG<br>TCTGGAAAGTGAGGAGCGTCTCTGCCTGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTC<br>TCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTG<br>GGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCC<br>GGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGG<br>GGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGTTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCC<br>CCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAG<br>GGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCC<br>GCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAA<br>GGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCT<br>TCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTG<br>CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGA<br>AGGCCGCAGGGACCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCC<br>CCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAACCC</u></font>ttaactacttttccttct<br>gtagtaagttcccctcttctatgctctatttaagagaatagtacacaaaaacttctttgtgttccttttttttcttttctcactttctcttctgttttcc<br>tggctttaaggacataccattaacctttttaaactgtttgttttcaagtttttgatacctcgctgatcacgtcacgctttcctcttctggtgtctcttga<br>tttttctgttccctaaatgtggactatgcacggcttactccctgagcttcttggttcctgtccacacccaatgtgggtggcaagccacccaggtgctgag<br>gcaagagaccaaggacacgagctgtttcagtataataaaatataaaacaagaatagttataccagatatagatc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:ZNF665:NM:024733:1/4	
0	chr1	25031291	25034096	3000012	0	-	CLIC4-A; H1_E_43; RIP_SVA_chr1_024_01	AGCCATAGCCAATGATCAAGTT	TTCATCGTTTCCTGGAATTCTT	OTHER	SVA	SVA_E	gctgatttttgtatttttagtagagatggggttatgccatgttggtcaggctggtctcgaactcctggcttcaagcgatccacctgccttggcctcccca<br>agtgctgggattacaggcgtgagccaccgcacctgacccggtaatattttttacttaggaaaatatcaaacaaattagaatgtgttacctacctaagtga<br>taagtggcaaggtcaaagatctacccattttattattaaaggatcatgctagccatagccaatgatcaagttagcttatttcttagatgaaacataacca<br>gcagagggcactggaacccagtaaaataaagttgagacattagcagagctcaactacagaagtgacaagagaaacaagccactt<font color="green"><u>AAAAATAAAAAATCAA<br></u></font><font color="red">TATAAAACGTTACTGCTCGCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTC<br>TCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCC<br>TCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGC<br>CTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTC<br>TCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCT<br>GGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACC<br>CCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCT<br>CTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTC<br>TGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGC<br>CCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAA<br>GTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCT<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGGGGGTCGGCCAG<br>CCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGT<br>GGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCC<br>AGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCG<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAG<br>CCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGT<br>GGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAA<br>AAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGG<br>GATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGC<br>TTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCAGCAGG<br>GTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAG<br>AAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAATAAAAAATAAAAAAATAAAAAATAAAACGTTACTGCTCAAAAGAAAAAAAAAATAAAA<br>AATAAA</font><font color="green"><u>AAAAATAAAAAATCAA</u></font>aaacataaaataataaacataaatttttattaattatattcaggccagcaataatgcatatagttagctgaaatgtaa<br>agtttataaattaacaggagaatacaatgtgagaaacagctaggtcagtaagaattccaggaaacgatgaaacactttctatgggtatatttaagaggaa<br>aaaagagaaaaggagagagcagaatctcaaggttgtaaaacaagagttaatatgcttcttattaaaggcagtgaatgcatggccgggcatggtgcttcac<br>acctgtcatctcagtactttggcaagccaaggcaggtagatcacctgaggtcagcagttcaagaccagcctggccaacatgatgagacctcgtatctact<br>aaaaat	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3121	301	NA	intron:CLIC4:NM:013943:4/6
0	chr1	113412863	113415300	3000013	0	+	LRIG2; H1_F_163; RIP_SVA_chr1_113_01	TTGTAAGGGATTGGGGTTTATG	TCTAACCTGTATCCTCCGCAGT	OTHER	SVA	SVA_F	agtctagtgattagatgtgacaggaaagaatggggggaaagcacaggcaatcctgagacttctagtttgaaagaatagaattgatcaggttagttagcta<br>tgactttgcaaagagtaaagtcccgaggtaaggagatatagggcagctaaattgtaagggattggggtttatgttaaggtgtggaacaagggatatcaag<br>tgagtagtttttttttttttaagtaatctggagctggggtattctgtgcttatggattccactgaactctaaaatctcagcccaggtactttagcaccca<br>cgaattaattagacaatttagggcaatgaatataaaagctctatattccattgttaatcagaaatgaatcattaaattctgtt<font color="green"><u>AAAAACACATATTTGCG<br></u></font><font color="red">CTAGAAAAAGTAAATTATGGGAGTCGGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGC<br>AGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCG<br>TCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCT<br>TCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGA<br>TGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGC<br>AACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCACCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGT<br>GAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAAGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGG<br>GTCAGCCCCCACGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCTCCTCAGCCCAGCCAGCC<br>AACCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCG<br>CCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCAGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAG<br>TGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCATGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCA<br>GCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACC<br>CCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAG<br>AAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTT<br>GATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAA<br>CAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCA<br>AGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAA</font><font color="green"><u>AAAAACACATATTTGCG</u></font>gctgggtgtggtggctcatgcttgaaatcccagcactctgggagg<br>ccgaggcgggcggatcacctaaggttgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaactacaaaattagctgggcgtgg<br>tggcgcatgactgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaatccaggaggcggaggttgcggtgagccgagattgtgccattgc<br>actccagcctgggcaacaataatgaaattttgtctcaaaaaaaaaacaaaaaaaacaaaaaaaacaaaaaaaacgtgtatttgtggccagtcacagtggc<br>tcatgcctgtaatcccagcactttgagagcccgaggtg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3290	956	NA	intergenic
0	chr1	210537777	210539239	3000014	0	-	PPP2R5A; H1_E_271; RIP_SVA_chr1_208_01	GTTCATTCACTGGAAGCACAA	GGGCAAGTAAGCCAGTATTGAA	OTHER	SVA	SVA_E	ttgaggagatgacatctaactctcatttcagcttgtctggaagttttagtggaagaataaaatcagtcaagtggtagattagcccaattgacttttatat<br>cccagtctctgttatcctgacctaacttttttcctctatcaaattgagaaaaaatgatcagaaagatagtactatgctaatgtggaagagtattttaaaa<br>agttttcaaaaactttgtgtaaaaggggaccagaatatacccaacatttccaaaagaagcaaaaacaagtagattctaatcagttcttgataatctacaa<br>tttcttcaagctaattacagatcattataactttgaggggtgactccaaaatctaactgtgacacaaatgtgctgaatgatt<font color="green"><u>AACAATTCACTTCATCTT<br></u></font><font color="red">AGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGC<br>CCCCAGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGCGGGGGGGGGGGGTGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCC<br>CCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGC<br>CCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGCGAG<br>GAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGC<br>GGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAA<br>ATTCTTCTGCCTTGGGATCCTGTTGATCTGTGGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAGATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACGC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCA<br>AATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAAGAAAAAAAAAAAAA</font><font color="green"><u>AACAATTCACTTCATCTT</u></font>gtttctcagtactcattca<br>taaaacaaatgctctcatatttttttgagaaaaactttaggttacctaaaaatgagaggacagtgtttcaaagaagatcaatgaagcatttttatatcag<br>aagaatttaagaaacaaagatcccttgctttaacaggtcttagaaaaatctacgttcaatactggcttacttgcccagcacctatagcctaagactatac<br>tacagtctaaaggtctaaagactacaggctctaggcttagtcttagtctttagttagattaaagactatagtctaaagacttactcattcagcttctaca<br>atttccactcacttttcaccttatgcaaatctcatttcaagttatcaaaaagaaacgtattgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	2115	709	NA	intron:PPP2R5A:NM:006243:1/13
0	chr20	42109555	42109945	3000015	0	+	C20orf100; RIP_SVA_chr20_042_01	NA	NA	OTHER	SVA	SVA_F	aaatacttatatgatgtagctaaaattctccctgggagaaaaatcatagttacagtgcagagtttctcaacctcagcactattgacattttgggatgcat<br>aattctttgtttagtggggacatccctggccactacccagcagatgccagtagcttcccaccctccagttgtcagaaccaaaaatgtcttcagagaaatg<br>ccccctgcatggtaaaattgctcatctcaactcctgccctagatgtttctgttactaaaaaagaaaatgtgaaaatagcttaatttgaaaacctatgtaa<br>aaaacaacatatgctacctcaagtcaacattaatagagaagaaagcagaatttaatgaattatcatgaaagttgtcaaatttttttaacatctgcac<font color="green"><u>TAA<br></u></font><font color="red">GAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATT<br>AAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAA<br>ACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCT<br>GCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAATA</font><font color="green"><u>TAA</u></font>gagctg<br>gttctttggctagacagttgaaatatataaacttttggccgggtgtggtggctcatgcctgtaatctcagcattttgggaggctgagacgggtggatcac<br>ttgaggtcaggagtttgagaccagcttggccaacatggcaaaaacccatctctcctaaaaatacaaaaagtagccgggtgtggtgacatgcacctgtaat<br>tccagctactcaggaggctgaggcagaaaaattgcttgaaccctggaggtggaggcagaggttgtggtgagccgagatagcatcactgcactccagtgtg<br>ggcaacagagcaagactccgtcacaaaaaaataaataaaataaattttgagaaggaaaattttaaaaagcaacgtgtattcacaatattac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:TOX2:NM:032883:4/10	
0	chr20	2751163	2754409	3000016	0	+	CPX-1; RIP_SVA_chr20_002_01	GGTGAAGATTCAGGTCAGGGTAG	GATGTGGTCTCTTGGTTTAGAGAGG	OTHER	SVA	SVA_E	taagatgtcttagggcagtaggcagagcctgggggcggggattcctggaaagatagggctttccagggagaactggagtgtgtgcagtctctccttcact<br>ccagcactgcatgtgccccggcaaagtgcacctccacccccaatcccccaaccccccagggcggagatttcaatgtggtaatgaggtgaagattcaggtc<br>agggtagcactgctgagctcccttctcatcttgtggcttgtttgtggttactggcttccagcctccattttttaaagcaagcacagctgtgaacactggt<br>taatttcacaggttttggggcttgctgaaagacttggggttactctgcagtgacaattccctaccttgaaaatattttccatctt<font color="green"><u>AAAAGAACTTGATTT<br></u></font><font color="red">GCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCT<br>CCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGT<br>CTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCC<br>CTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTC<br>CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCCACGGTCTCCCTCTGATGCCGAG<br>CCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGC<br>CGCCACACCTGACTGGTTTTCGGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGCTCTCCAGCTCCTAACCGCGAGTGATCTGCCAG<br>CCTCGGCATCCTGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAGTGGTGTCCAGGCTGGAGTGCAGTGGCGTGATCTCCGCTCGCTA<br>CAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTG<br>CTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAA<br>GCGAGGAGCGCCTCTTCCCGGCTGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCA<br>CCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCCGCCGCTCCGTCTGAGAAGTGAGGA<br>AACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCA<br>CCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCG<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAG<br>CCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGG<br>GGGGTCAGCCCCCCGCCCGGCCAGCCGCCTCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGGTCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGC<br>CGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAAACCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGGGTCAGCACCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCA<br>GCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCC<br>GGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGA<br>AAAAATTGAGAAATCGGATGGTTGCTGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTG<br>GGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAGACATGTGCTGTGTCCACTCAGGGTTAGATGGATTAAGGGCGGTGCAAGATGTG<br>CTTTGTTGAACAGATGCTTGAGGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACGCTGCGGAAGGCCGCAG<br>GGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGA<br>GAAACACCCAAGAATGATCAATAAAAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGAACTTGATTT</u></font>aacatctgttggttctgtcatattttccaggttgcgtc<br>ttcaaatgtcttgcccccaaaataccagtttttaaaattaatacgtgatattgtatccttgcaaaatatttgtaacatgtatgaaagttatgaacctctc<br>taaaccaagagaccacatcaatctaaaagacagatgttatcaggttagggcctcttcctgtgtgctcctcatcttactgtgcaagctgggattcctggac<br>aatggcaaattgaactgctcttcacagatatctttgacttgatattgatttaaaatgaactgcttgcttctaagtttccaccattaagaattatgtacat<br>tgttgtagatttctggtagttaacttttattcagttaaagaaattcc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr22	25498077	25499792	3000017	0	-	AK026502; RIP_SVA_chr22_025_01	NA	NA	OTHER	SVA	SVA_F	aactatacttgcccaactgcgttgtcagtagagttccagttcagtttccccattgtgaagtactcatgtgagacctggaagacaggagagaataagaaag<br>cattattgttctactagcagcgggactttcgcagaaagcagacatatggtgttttccagcatcttctggacattttctcttaagtaacccacattggtgc<br>tgtaggcagctgaggacctcagtagtagtgctctgcaggaatccctgcacaccctgctatcctaaatgctgcagcattgcattccctgtattaaatctct<br>tcctgattgaaatacctagaggggtttctgttttccttatgcatcctgatgaatacagacagtcagaacacatggcttctaatttcattt<font color="green"><u>AGAGGTTAAG<br></u></font><font color="red">CCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGA<br>GGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCA<br>CCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGA<br>GCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCC<br>CCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCATGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCC<br>CCTGCCCGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGCCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGT<br>CTGGGAGGGAGATGGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCGT<br>CTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAAGGAGGTGGGGGGGGTC<br>AGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTG<br>CCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAGCAGCTCATTGAGAACGGGCCAGGATGACA<br>ATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACT<br>TTTCATTTTGTTCTGCACTAAGAAAGATTCTTCTGCCTTGGGATCCTATTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGT<br>CCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAAT<br>CTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCT<br>CCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAATAAATAAATAAATAAAATAAAATAAAATA<br>AAATAAAATAAAAAAA</font><font color="green"><u>AGAGGTTAAG</u></font>ggtgggctgggctggtaatgggtacccactgataaaagcaacaataatagcaactcttactttttttctgtatg<br>tgcaaggcactatgatgcgaggcaatttacccaacctgtctcatttatgagacgaccctgtttttgtttgtttgtttttgagatggagttgcccaggctg<br>gagtgcagttgcgcgatctcagctcactgcagcatccgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggataataggcgtct<br>gccaccatgcccggctaatcttttgtgtttttagtagagacagggtttcaccatgttggccagactggtcttgaactcctgacctcaggtgagccatcca<br>ccttggcctccaaaag	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr22	22525950	22528505	3000018	0	+	SLC2A11; RIP_SVA_chr22_022_01	CCGTGTTAGCCAGGATGGTCTC	CTTGGGGTAGACGCAACTTGGTC	OTHER	SVA	SVA_E	aactgtcctagcgccatttattagcccgtcacttcccacttatttattattattattttttgagacggagtctctctgtcgcccagacgggagtgcagtg<br>gcacgaccttggctcactgcaagctccgcctcccgggttcacgccattctctcgcctcagcctcccgagtagctgggactacaggagcgtgccgccacgc<br>ccggctaattttttgtatttttaatagagacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcctgcctcggcctccc<br>aaagtgctgggattacaggcgtgagccaccgcacccggccacttcccacttatttcttaagggggaaaaggcaatggttgtttt<font color="green"><u>GAAAAAAAATTAACCT<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCC<br>GAGCCAAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCG<br>CACCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGC<br>CAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCG<br>CTGCAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTATGGGAAGTGAGGAGCGTCTCTG<br>CTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAA<br>GCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCG<br>CCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCTGCTCCGTCTGAGAAGTGAGGA<br>AACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCA<br>CCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCTGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGG<br>GGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGT<br>GGGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCAGCCAGCCG<br>CCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGG<br>GGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCC<br>ACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAA<br>ATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGAT<br>CCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTT<br>GTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGC<br>AGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGC<br>GAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATAAATTAAAAAAAAAAAA</font><font color="green"><u>GAAAAAAATTAACCT</u></font>tcaaaataaaatatcagcagttgaaacta<br>acaatgtattaataacaataatattatgaccaagttgcgtctaccccaagaattcaagaatggtttaccattagaaagtttattgatgtaactgatctca<br>ttaacagattaaaggagaatacccatatgatcatcttaatagatgcacgaaaagcatgcaataaaatacctatttattataactgctaatattttgtgtt<br>tttccttaaaaatgcagtgtttttaggaattaaagttcagagcagcaaaagtcaaacaaaaaccaagtctgagcaatagagctactacagtgcccatcac<br>agtgtctgctcaggtgacttcttaaggtcatgtccagctctatgtttctgtgacc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	promoter:SLC2A11:NM:001024938
0	chr22	39470078	39472580	3000019	0	-	GPR24; RIP_SVA_chr22_039_01	GACAGGCTGGTCTCGAACTCCTG	GAATCTATGTCTTCTGGGTTGCAG	OTHER	SVA	SVA_E	atgtatcacacccagcgagtcatgagtatacttcagtcacacatacatacctgcacccaggcaattgtttaaaagcattttcttctttctttccttacct<br>gtagtttccagactagctgataaatgacctaaaatgttatcacaagttgcagaatgtgacccttacccattatcttcatgttcctagaatttgtgataca<br>aaaaaaaaaatgtatagccaatcaatagcttatgttattttaatgaaccagtgtaagaactaccccttcttttttcctttaaaaacccatgtatagctgc<br>tgctaattgaagcatatattcagggcaacttgaatctatgtcttctgggttgcagtcttcaaatttggcccaaacaaaccctactt<font color="green"><u>AAAACAAACAAACA<br></u></font><font color="red">CCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCT<br>CTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCC<br>TCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGG<br>CTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTT<br>GGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGAT<br>GGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCC<br>CAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCC<br>TCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCT<br>AGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTG<br>GGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGT<br>GAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTC<br>CAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCC<br>CCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCC<br>CTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCC<br>TGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGAACAGTCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGG<br>CGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTC<br>ATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCAC<br>TCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTA<br>AGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAATAAAAAATAAAAATAAAAAAAAA<br>AAA</font><font color="green"><u>AAAACAAACAAACA</u></font>aacaaaaaaaacggggctgggtgcagtggctcaggcctataatcctagcactttgggaggccgaggtgggtggatcgcctgag<br>gtcaggagttcgagaccagcctgtccaacatagccaaaccctgtctctactaaaactacaacattagctgggcgtggtggtggtgggtgcctgtaatctc<br>cagctcaggcaggagaatcgcttgaaccctgggggcggaggttgtggtgagcggagatcatggccattgcacttcagcctgggcgtaagagcaaaactct<br>gtctcaggaagaaaacaacaaccacaacaaaaaatgctacttatattaattttgcctctgtttgtttgtttgtttctctctctctctctttcttcttatt<br>att	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr2	170349765	170352197	3000020	0	-	SSB; RIP_SVA_chr2_170_01	NA	NA	OTHER	SVA	SVA_F	gtgacacaagtattttgagtttctgtctaaaaagaagttgaattgagaataaaccactataaatgtaatttgagcaggcatttttaaacattttaataag<br>atgtgaagaaattacagttcctagtttaagaactgaaaaaaacagataaaattaatagaatatgaagctaaagtcataaacatgaatgacaaaatcagtg<br>attattctgtattcaagaagcaaattataagagagaagttttcaaatcataccaatatcagtgattcattaagaataaataaatttcaaaaaagaaatga<br>ataagcttcttggatagtgtataatccaaataacaaagtggagcaattcataagaatatattggaaaaaattaaaattttttattattt<font color="green"><u>GAAAATAATGA<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCCCTCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCCACGGTCTC<br>CCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGA<br>TTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCC<br>AACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCAC<br>TACAACCTCCACCTCCCAGCCACCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTC<br>TGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCAGCCGCCCAGTCTGGGAAGTGAGCAGCGTCTCCGCCCGGCCGCCATCCCATCTAGG<br>AAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCC<br>CACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAG<br>GAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTTCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGC<br>CACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCATC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCATGCCCCCCGCCCGGCCAGCCGCCCGGTCCG<br>GGAGGTGATGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCG<br>TCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTTTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTCGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCTGCCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAG<br>CCGCCCCATCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTG<br>CCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCC<br>GTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACC<br>CCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCA<br>GCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGA<br>CCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAA<br>AAATAAATTTAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAATGA</u></font>gattggccgggtgtggtggctcacacctgtaatcccagcactttgggaggccgagg<br>caggcagatcatgagttcaagaccagcctggccaatatggcgaaaccccgtctctactaaaaaaaaatacaaaaattagctgggagaggtggtgcccacc<br>tgtagtctgagctactcgggaggctgaggcagaagaatcacttgaaccagggaggtggaggttgcagtgacctgaggtcacaccattgcactccagcctg<br>ggtgacagagcaaggctccatttcaaaaaaaaaaaaaaaaaaagaaaacaatgacatcaacaaatacaacctaaaatcataaaatcataatacacctttt<br>ttttttttttttttttttgagacggagtctcgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr2	216798189	216800743	3000021	0	-	XRCC5; H2_E_245; RIP_SVA_chr2_216_01	AAACCAACAACTTTGCATAGGG	AGGGAAGGTGTGGAAAAAGATT	OTHER	SVA	SVA_E	ggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaagaaagaaaga<br>aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagcttctgcatagcaaaggaaacaacagagtgaagagatgacttaataaatac<br>tcaaggtgatggataccctaaatatcctgacttgatcattctacactctatgcatgtaacaaaacaagtgtaccccataaatacataaaatatcatatca<br>attttaaaaaccaacaactttgcatagggcatgacgcatcacctctgtgaactgatgagtccaagcatcttgccatgcatctgcttt<font color="green"><u>AAGAACACATGGC<br></u></font><font color="red">GCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCC<br>CGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCT<br>CCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCC<br>TGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGATGGGGTT<br>TCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACT<br>CAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATT<br>GCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCC<br>AGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCG<br>TCTCTGCCCGGCTGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTC<br>TGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGT<br>CTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCG<br>CCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGG<br>GGGGGGGGGGTTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAAGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTTCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGG<br>GACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACG<br>ACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGTGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAGAATT<br>GAGAAATCGGATGGTTACCGGGTCTGTGTGGATGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAGGAAAAATTCTTCTGCCTTGGGATCCT<br>GTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTT<br>AAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTTAAGTACCCAGGGACACAAACACTGTGGAAGGCCGCAGGGTCCT<br>CTGCCTAGGAAAACCGGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACA<br>CCCAAGAATGATCAATAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAACACATGGC</u></font>atgggctgggcgcggtggctcacacttgtaat<br>cctagcactttgggaggcctaggtgggtggatcacgaggtcaggagttcgagaccatcctggccaaggcggtgaaaccccatctctactaaaaatacaaa<br>aaaactagccgggtgtggtggcgagcacctgtaatcccagctactcaggaggctagggcagagaattgcttgaacccaggaggcggatgttgctgtgagc<br>cgagactgtgccattacactccagcctgggggacagagcgagactccatctcaaaaaaaaaaaaaagaatacatgccatgtgttaccctaacttcatgag<br>tcaggtgggtgccaggggtaccagagagccaggctatctctagcaccatctaaga	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	60	3109	551	NA	intergenic
0	chr2	201854904	201857685	3000022	0	-	CASP8; RIP_SVA_chr2_201_01	GAATCCAGCTACGAATATAGAGGG	GATGAAGCAGTCCATGTTACTGTGG	OTHER	SVA	SVA_E	acctttctggtagttatccccctgacaagcctgaataaaaaacactttgggttttccagcaagggaagggcacttcaaaccagtgaactgagatgtcagc<br>tcatagatgggggcctcctgtccatcagtgccatagatgatgcccttgtctccatgggagaggatacagcagatgaagcagtccatgttactgtggtcca<br>tgagttggtagattttcaaaatctcatagatttgctctactgtgcagtcatcgtggggcttgatctcaaaatgaagctcttcaaaggtcgtggtcaaagc<br>ccctgaaaagtgaaatttgaacagtcacgttataccacagtaattcacagaccacagctggagagcacagtgggcataacattgatagat<font color="green"><u>AAGAATTTGA<br></u></font><font color="red">CCCCTCTCCCTCTCCCTCTCCCCGTCTCCCTCTCCCTCTCCCTCTCCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTT<br>TTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATT<br>GCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTTGCTACAACCACCTCCCAGCCGCCTGCCTTG<br>GCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACGCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCT<br>CTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTG<br>AGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGCGGGGGGGGGTGGTCGGCCATCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGTTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCC<br>CCCGCCTGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGC<br>CCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCTTCCGGCCGGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCA<br>TCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCGCTTCTG<br>CCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACA<br>ATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACT<br>TTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGT<br>CCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAAT<br>CTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCT<br>CCACTATTGTCCTGTGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAATTTGA</u></font>accagaaa<br>ttcaagagcaaaaccctctatattcgtagctggattctgcaggcttctaatatttattgccaccagctaaaaacattctcaaaccctgaagcaaatgaga<br>aaggagagagtgttattgttggtctgttttctctagtaaactagtttacaagatgggtaagctatcatttaggcttactactgaaccaattttaaaaatg<br>attatattatttacataatcagaaaaaaacaaaacaatttttgaataaaagatccaacttattttatcctaaaccttctcaaaattatttatgtatagca<br>aaataaaagatatgaattaataagatagaactagaagaccttatacaaaaggttatcccctctctatccctccccattacct	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:CASP8:NM:001080124:7/9
0	chr3	195602462	195603210	3000023	0	+	AFURS1; RIP_SVA_chr3_195_01	GTCTATAGGCAAAACGTGTCTACGTG	GCGATACCTGGCAGAGGCAGTGG	OTHER	SVA	SVA_E	caatccgcccgcctcggcctcccaaactgctgggattacaggcatgagccaccacgcccggccgctcacatgttcagtttaactggggaaagtcaaactg<br>ctctccaaagtggttgtgttggtctacgatgacacctgccatttgtgagagttcctgtgcttcctctctgcccacacgtggcacttcctgctttttgcca<br>tttctatgaaagatatctcagcatgattttaacttttcctttccctgtttaatgatgaacttgaacaccttttcacataattaaggcccacttgtgcttc<br>atttgagaaagctgggtttccttttgcccatttgtctataggcaaaacgtgtctacgtgtcttttgaacacactgataatgctgtctgcatt<font color="green"><u>AAGACTTC<br></u></font><font color="red">CGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGTGGGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCTAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCAGTTTTGTGGAATAGAAAGGCGGGAAGGGT<br>GGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTG<br>CCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAG<br>ATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGC<br>CGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTGTTGTCCTATGACCCTGCCAAATCCCCCTC<br>TGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGACTTC</u></font>tatccttcaagacaccataaaaaaggggaaaagataaaccaca<br>aactaaagatatttgtaacacctatagctgacaaaggcttaatgtcagaagatataaagaatcatgggatccaatcccctttgatgcagcctaatgcagt<br>cagagcccagtaaaggctgggttgactgaaattaccttcaaagtcacgcagccctggaccacagggaagagccactgcctctgccaggtatcgcgggagg<br>tctttcagttccgatcaaggaatgcaactccagagccctgaactgctacactggtgacctggtaagtccgtcatgcataggcacatcgagtgaaagcctc<br>cccgcccccttgcccatgaaattgccagggagccaacatgacagactgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr3	147296330	147298305	3000024	0	+	PLOD2; RIP_SVA_chr3_147_01	GAGGATACGGAGAAATAGGAACG	GTGTTAGTTTGGTGAGGATGATGG	OTHER	SVA	SVA_E	aaaaaaagctcatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagataccatctcatgccagttagaatggcaatcgctaaagtctgga<br>aataacggatgctggtgaggatacggagaaataggaacgcttttacgctgctggtgggagtgtaaattatttcaaccattgtggaagagagtgtagtgat<br>tcctcaaggatctagaaccagaaataccatttgacccagtaatctcattacagggtatatatccaaaggattctaagtcattctactataaagacatatg<br>cacatgtatgtttattgcagcactatttacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactggat<font color="green"><u>AAAGAAAATGTGGCATATA<br></u></font><font color="red">CCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCCCTCCCCCCTCTCCCTCCACAGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGT<br>ACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTG<br>GTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACTGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGG<br>TGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCT<br>GCCTGCCTTGGCCTCCCAAAAAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTG<br>GGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCC<br>CGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTG<br>AGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACC<br>GCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCTGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGAAGCCACCCCGTCCGGGAGGGAGGT<br>GGGGGGGGTCAGCCCCCCGCCCAGCCAGCCACCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCC<br>GGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGAGTCGGCCAGCCGCCCCGTCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGGCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCT<br>CCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCTGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCGGGCCGCCCCTACTGGG<br>AAGTGAGGAGCCCCTCTGCCCAGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATA<br>GAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCTGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACT<br>AAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGA<br>TTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACAC<br>AAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACC<br>CTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAATAATAATAATAATAATAAAA</font><font color="green"><u>AAAGAAAATGTGGCATATA</u></font>tacac<br>catgaaatactatgcagccatgaaaaagaatgagttcatgtcctttgcagagacaaggatgaagctggaaaccatcatcctcaccaaactaacacagaaa<br>cgggaaacaaacactgcatgttctcactcataagtgggagctgaacaatgagaactcgtggacacagggaggggaacatcacacactggagcctgttgag<br>gggtggagggaaaggggagggagggcattaggacaaatacataatgcatgcagagttaaaaacctagatgacggattgacaggtgcagcaaaccaccaca<br>gcacatgcatacctatgtacaacaaacctgcacgttcagcacatgtatccaagaacttaaagtaaaattttaaaaa	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:PLOD2:NM:182943:7/20
0	chr5	137050478	137051785	3000025	0	+	KLHL3; H5_E_128; RIP_SVA_chr5_137_01	CCTTGTAGTTTGTTGGCATGAA	GCTGAGAGTCTCCTCCCTGTTA	OTHER	SVA	SVA_E	cctagttctgatctggaaggtctccttgtagtttgttggcatgaaataccttctaactcaaggcctgggtccagggagacctgtgaccacagagaccaat<br>gctttcccttgtgtgtgaccctagtgggtgcctgcacccctgcacttacagtagagtgaggtcacaggtctgtctcaagaggcagcaatggtagagaacc<br>ccaggctccatctaaagtcaggggtacaaggaaaaaagcaggcccacgtcagtgggtgggttcaagggagtaagcatggataatcattttctacttctcc<br>tctaaatactgcacaatctaaccttcattcccttcttctaacatctttgcatcatggccttatcttctgcattatactacttta<font color="green"><u>AAAATATTACCTCCCT<br></u></font><font color="red">GAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCG<br>CCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCTGCCC<br>CTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGCGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCTGGCTGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGC<br>GAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAG<br>GGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGG<br>CCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGGAAAAATTGAGAAATCGGATGGTTGCCAGGTCTGTGTGGATAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CACTCCCTAATCTTAAGTACCCAGGGACACAAACACTTCGGAAGGCCGCAGGGACCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAATAAAATAAAATAAAATAA<br>AATAAAAT</font><font color="green"><u>AAAATATTACCTCCCT</u></font>agtgtgcagagcatagtgggctgctgagaaagccacccaggagaggatcacaggcaccacagaaggcctgcataac<br>agggaggagactctcagcctgaagatcatgctgacccagccaggaaaagtaggagggcctgctcactcattcagtgagggaacaggctccatgtgtctgg<br>gaggaagtcacccgacagggaagagaagaagacacccacatggcgcttcctctatcccaagatgatgacataccctgtgtctagcggacagctggatgtc<br>tgtctacactgtctggttgttgggatttggtgactacattgcacaggcttccaggaacatgctttcaatggaaaatgccaactctagccacatgcactcc<br>tcagttac	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	1795	470	NA	intron:KLHL3:NM:017415:5/15
0	chr5	75502352	75504657	3000026	0	+	RAP1B; RIP_SVA_chr5_075_01	CACACGACTATAAACATTGTTCCC	CCAAAGAGCTCCTATATAGACTACTCC	OTHER	SVA	SVA_F	acgttacacatgtgaaacaatcactaacaggcaaaaatactaaacctgtatatttggtattgcaaatacacttatgcatgagcaagcaagggattcacag<br>tgagaatctacagctgcagaagcctgaaaatgatttacaaaaattgttaaatcattaaaaaattgtttgaaaatatacacttcttgttgtagacccccac<br>tgtacacacgactataaacattgttccctatgtaaacaaaaaaaggaaacatataataagagatttgaaaagtctggacatttccttcccaacagatatt<br>aaaggcaacgtctttaatctaagacattatactgaaaggactatcatattttaaagacaagatcactgtctccacaggtttttt<font color="green"><u>AAAAATTAAAAAAACT<br></u></font><font color="red">GAGAAGGCTCGAAGGCGCCGCGGGCTGGGGTCGGTGGCTTAGGGAGCCCGTCCGGCCATGGTGGCCGCGGGTGGTGGTTGGCGCGGCTGCGCTGCGGCCC<br>GGGGCAGTGCGGAGCCGGGACAGTCGCGGCGCTGACGCCCGCGGGCCCCAGCTGCAGCTATGAAGCGGAGCCGCTGCCGCGACCGACCGCAGCCGCCGCC<br>GCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAG<br>CGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGG<br>GAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGG<br>CCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGT<br>GGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCTGC<br>CCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAG<br>CGTCTCCGCCGGGCAGCCACCCCGTCCAGGAGAGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAG<br>CCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCC<br>GTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCG<br>TCCGGGAGGGAGGTGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGAGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGC<br>CCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGG<br>CCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CAATCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCTCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAATACAA<br>AAAAAA</font><font color="green"><u>AAAAATTAAAAAAACT</u></font>atatagctgtgttaatcaaagcgcttattttgtacaataataatgaccttgaatttcttaaaaaaaattacaataagc<br>tacaagtatcaaagaagcgaagttatctggagtagtctatataggagctctttggactttcttttattatgctaaaatagtggtgcttttaggatttaca<br>ttattgtactctccaatacaaagtatggggcatgttaaagtatacagtacaccattttcatacatgtacaacattggtggatgaagaatgtctcttagca<br>gtaatactggatgtagcctctggttttaccagctgcatactctaggactattatataagtaaaaatctctcttgtgatactggaaagtgattagaatgtg<br>caaact	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:SV2C:NM:014979:2/13
0	chr6	29793468	29796059	3000027	0	+	HLA-F; RIP_SVA_chr6_029_01	GTCATTTGGTTTTAAGAGGTAAGAGG	GGTTGAATAACTGGGGTCAGGTG	OTHER	SVA	SVA_E	agctcactgcagcctcgacctcctaggctcatgtgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaa<br>tttttgtatttttggtagagacaagggttttgccatgctgcctaggctgatctcgaactcatgaaatcaagctctctgcctgactccatctccaaaagtg<br>ctgggattacaggcatgagccaccaccacacccaacctaaattaattataaaatattaaacatgtcatttggttttaagaggtaagaggaatttccatgg<br>ctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccacctgtgtcccaattaaactc<font color="green"><u>AAAAGAAAGACCCAAGCCT<br></u></font><font color="red">CCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTC<br>TCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCC<br>TCTCCCTCTCCCGTCTCCCTCTCCCTCTCATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGC<br>CTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGG<br>CTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCC<br>CAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAGGAGCCGAGATTGCAGCCTCTGCCCGGCC<br>GCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGGGGA<br>GCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCC<br>ATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCGGCCCTGTCTGGGAGGTGAGGAGTGT<br>CTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTC<br>TGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGA<br>GGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGTCGGCC<br>AGCCGCCCCGGCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAG<br>GTGGGGGGGTCAACCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGGAG<br>GGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAG<br>CCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGAACAGTCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGG<br>AATAGAAGGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCGGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTG<br>TACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAGA<br>TGGATTGAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGG<br>ACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTAT<br>GACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAATAAAAAATAAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA<br>A</font><font color="green"><u>AAAAGAAAGACCCAAGCCT</u></font>tgctaggctgattctatcatcccccccatgatagacgtgtaaccttggtcattcacctgaccccagttattcaaccaaca<br>ataatgtaagtcctgccttgaagggatttttgcatatataattaaggtcctaaatcaattgactttaagacagggattatccctggtcgggctgtcctca<br>tctggcgagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgagagggattcagtgtgagggggttcctccaatgtggattctaaa<br>aatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcagcctctctctaccttgacagtaggcaaggaacaggaaccttagtcct<br>a	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr6	30007762	30009505	3000028	0	+	HLA-G; RIP_SVA_chr6_030_01	NA	NA	OTHER	SVA	SVA_D	aagcatcattaaagtaaaaacagaaaaatttcgggccttatggtgtatatgttctagatgcaagcttgtccaacccgcagctcgtgggctgcatgtggcc<br>caggacaattttgaatgtgaggacttttttgcttatctgtggtgcacctgagtcccggagtgagtgcacccacctccctcagggtcaggagtgaatgctt<br>taggaaccctccttttcagtgacctgaaaaagatagagggcacacttactgtgataacccagagtatcagtcaagggggcttgaccttcaaggagttatg<br>ggaaagcttaataaagggtggtgtcccagggtcagaaaagatgggcagacagcaagagcactgcttgatatctatgataagcatgt<font color="green"><u>AAGAATTGAGGAGC<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTGCCTCTCCCTCTCCCTCTGCCACGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCT<br>GATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCCGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCA<br>GGCGCGCGCCGCCACGCCTGACTGGTTTTCATATTTTTTTGGTGGAGAAGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGCGA<br>TCCGCCAGCCTCGGCCTCCCGAGGTGCCAGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCG<br>GCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCAAGATTGCAGCCTCTGCCCGGCCGCCACCCTGTCTGGGATGTGAGGAG<br>CCCCTCTGCCTGACTGCCCAGTCTGGAAAGTGAGGAGCATCTCTGCCTGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTTTCTGCCCGGCCGCCCATCA<br>TCTGAGATGTGGGGAGTGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGTGACCCCGTCTGGGAGGTGAGGAGCGTCTCT<br>GCCCGGCCGCCCTGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCACTCCGGG<br>AGGGAGTTGGGGGGTCAGCCCCCCGCCCAGCCAGCCTCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCT<br>CTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCTCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCTCCATCC<br>GGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCACCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGAGC<br>CCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGTTTAGTGGAATAGAAAGGGGGGA<br>AAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCCTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGGAAAATTC<br>TTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGT<br>GCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGG<br>AAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCC<br>CCCTCTGTGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAA</font><font color="green"><u>AAGAATTGAGGAGC</u></font>aagcttcacattcagaatccagtggctgaggaagtatccata<br>tccctaagagaaagaaccttgggacaccatgactgttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggagat<br>gggataagtgttaacattgggtgtgagctaacattgctgcccagattcccacagcaccattatgtccctatcacagtggggcttacagaggccagggaat<br>aaacctggacaaattatgccccacggtggaatcactgggtccataaatcctgtcctggttatctccccattctctgtaaaaaggattctctgtaaaaaga<br>ttacatcgccctaaaccaggacctgagctcttggactgcggcgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	74426248	74428428	3000029	0	-	SLC17A5; RIP_SVA_chr6_074_01	NA	NA	OTHER	SVA	SVA_D	ggacaacagagtgagactccatctcaaaaagtaattaattactaaattggtgatttaaatatctgcccctccatttactttttattccccatatattcct<br>acatacttgaaaatttcactaaggccaatatgatgaggcactgtgaaacacaatgaacacagtgaaaggacaagaactgggatctgctcaggttgcagaa<br>aataaataagactttgttccagctcctaggaaacctacagttataaaaggaaactaaaacattaaataatcaactactaactataaaattccatacagaa<br>aatgatatgtatcctaaaagagatataattaaaatcaaatgggttgttcctaagataggtaagctcattttgcaaagcaaatttaactctaa<font color="green"><u>AAAAATGG<br></u></font><font color="red">CAGGCCTGGCCTCCTCTGGGTGGATTTTCATTCTGCAGCATTCATTCAGGAAGCACTCATGAAGAGCCTACCAGGTGCCGGCCCTGGCCTGGGGCTGGGC<br>TTAGAGCCGGGGCAGGATGGCCCGGCATCTGCTCCATGGAGCTCACAGCCCAGCCTAGGCTGGCAACTCCAGTCTGCCCCAGTTTCCAGTTCTGTCCATT<br>CCCCTTGCAGCTCAGCATGGATGAAGCTTTGAAATCCAGCTCTCCCTCTCCCTCTCCCTCTCCCGTCTCCCCACGGTCTCCCTCTCCCTCTGTTTCCACG<br>GTCTCCCTCTCATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCC<br>TGCGATTGCAGGCACGCGCTGCCACGCCTGACTGGTTTTCGTATTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCTGGCCGGTCTCCAGCTCCTA<br>ACCGCGAGGGATCCGCCAGCCTGGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCCGGCTGGAGTGCGGTG<br>GCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCATCCTCTGCCCGGCCGCCACCCCGTCTGG<br>GAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGAAGTGAGGAGCCCCTCTGCCTGGCTACCCAGTCTGGGAAGTGAGGAGCGTCTCCGTCCGG<br>CCGCTATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCTGGCAGCCATCCCATCTGGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGT<br>GGGGAGCGCCTCTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCACCTCTGCCCGGCCGCGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCAGCCAC<br>CCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCAGCAGCCGCCCCGTCTGAGAAGTGAGGAG<br>CCTCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCCTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCGCCCGGTCTGGGAGGGAGGTGGGGGAGTCAGCCCCCCGCCCGG<br>CCAGCTGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCTCGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGGCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAG<br>GTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCATCCGGGAGGTGAGGGTCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCACCACCCCGTCTGGGAGGTATGCCCAACAGCTCATTAAGAACGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGGGGGAAAGGTGGGG<br>AAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTATACTAAGAAAAATTCTTCTGCCTT<br>GGGATCCTGTTGATCGGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGT<br>GCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCGTCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCA<br>GGGTACTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGTG<br>AGAAACACCCAAGAATGATCAATAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAACAAAATAAAAT</font><font color="green"><u>AAAAATGG</u></font>taatggcggcc<br>aagcgcggtggctcacgcctgtaatcccagcactttgagaggccaagcgggggtggatcatctgaggtcaggagttcaagaccagcctggccaacatgct<br>gaaaccccgtctctattaaaaataacaaaaattagctgggcatggtggcaggctcctgtaatcccagcaattcaggaggctgaggcaggagaatcgctgg<br>aacccaggaggtggaggttgcagtgagccaagatcacgccattgcactccagcctgtgtaatgagggttaaactccgtctcaaaaaaaaaaaatgctaat<br>ggctaacatatattgaaatgtaataattacagtacagtacccaccaggtacagtactgtaatttacaggtattatcttatt	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr6	158468271	158469054	3000030	0	+	SERAC1; H6_F_172; RIP_SVA_chr6_158_01	CTCAAGCAATTCCTTGCCTCTACC	CTTCTATAGTTCGCTCAGGTAACAGC	OTHER	SVA	SVA_F	gaccaacctaggcaacaaagtaggacccccgtctctacaaaaagtttttcaaattagccatgcacaatggcacgtgcctgtagtcccagctactcgggag<br>gctgaggtgggaggatccattgagcctaggagtttaaggctgtagtgagctatgaccacaccactgcactctagcttcagcaacacagtgagattctctc<br>aaaaaaaaaaaaaaattacataaataattagatgatcatcatggcaaacctgctctcctatgatcatctacaatactgattatcttaggcgcagattatc<br>tacaatctcaagcaattccttgcctctaccaaaataacatgttctaaggacccataactaaccctaagtagagccttgtctatt<font color="green"><u>GAAAAATGAACATATC<br></u></font><font color="red">TCGGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGG<br>AAGTGAGGAGCCCCTCTGTCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATA<br>GAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATTGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACT<br>AAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGA<br>TTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACAC<br>AAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACC<br>CTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAAATGAACATATC<br></u></font>atgaggggtagaggtgggagaacaaagtaaaaaatactcagtatataaagctgttacctgagcgaactatagaagaatgaagatgttcattcaaagccat<br>atttccaatgacacgcattatatttctctgtactttagggcagtccttgtgaagtcggtacagcctctgaagtagctgcaggcctccatttgcttcgatt<br>ttatcacaatgtgtggatatctggcacaataaataaacagaagctcccttgacattgtacaaattcatgacgtgagatgacacagcctggtcatggggac<br>agctaggtagctcccactcaagggcagggatgcagggagactcctcaaagctcttgtctcagcttgcttaaataagcaaatccc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:SERAC1:NM:032861:10/17
0	chr7	1151605	1154180	3000031	0	-	LOC90637; H7_E_5; RIP_SVA_chr7_000_01	AATTTTGAAACTGGGTGGTCAG	TCATTTCCATCAGGtAGGCTTT	OTHER	SVA	SVA_E	cccactgggaggcttggaacagatccccagaggataaacggggactgctgtataatttttgtagcacagagttagaagtgtgtgtatatttctagaaatg<br>caaataaaaccaaggcctgaagagtaaaaaaatatttacatgttgaaataatattttgaatatgctaggttaataaaacattaaaatgaatttcacttgg<br>gttttactgtgactgctcaaaattttgaaactgggtggtcagctcggtgctgtccctgttagatggcgttgtctagctctcccaccaaaggccaaacagc<br>cctggcacattttctcagcggggagaggcggcgcctggttcatgcattgcgttttctgtcttcgatttgacggagtattgaagtat<font color="green"><u>AAAACTTAAGAGTG<br></u></font><font color="red">CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGG<br>ACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCT<br>GACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCC<br>CGAGGTGCCGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCC<br>CAGCCGCCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATC<br>GTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCTGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTC<br>TTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGG<br>ATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGG<br>CAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGG<br>GAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGTTGG<br>GGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCCCTCTGCCCGGCCGCCCCTACTG<br>GAAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGG<br>GGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCCGCCCAGCCAGCC<br>GCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAA<br>AATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGA<br>TCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTT<br>TGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCG<br>CAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTG<br>CGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAACTTAAGAGTG</u></font>aggccaggtg<br>tggtggctcaggcctgtaagaccaaaactttgggggggccaaggcgggtggatcacttgaacccagaagttcaagaccagcctgggccacgtggcaaaac<br>cctgtctctacaaaaaatacaaaaattagccaggtgtggtggtgcgtgcctggagtcccaccaactcgggagacagaggtgggaggatcgcttgagccca<br>ggccctcaaggctgcagtgaaccatgactgtgccactgcactccagtctggatgacagagcgagacccttctcaaaaaaaaaaagttgatggaacccaaa<br>gcctacctgatggaaatgaaggtgtccccagagtgccactgagagcgggcgagtcggccgtggccctgccggctgg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	55	3099	510	NA	intergenic
0	chr7	10470842	10472658	3000032	0	-	BC002644; H7_F_22; RIP_SVA_chr7_010_01	CATGGAACTCTGCTTGACGTACAC	CCAGCATTGTGCTTCCTGTATAGCC	OTHER	SVA	SVA_F	tacatatgtatacatgtgccacgctcgttttaaaagcatatatttaaaactaatggcaattttatactacacagtttcattcagctgtttaattcctcct<br>tgctagtagttgaaagttgcatgtccctagaaatgctgtgtaatgatttactgtcatggaactctgcttgacgtacacaataaggatataaatatgttgc<br>ctaacctactatttttaatactggaatttgcttaaaataaatttctaaccttgtacattttcattattatattaacctggggaaaaattctttgtaaaga<br>tatttaattaaaatccttatactagacagtattattccattcttacatagctgtaaagaaatacccgagactgggtaatttat<font color="green"><u>AAAGAAAAGAGGTTTAA<br></u></font><font color="red">GTCTTTGCCGCCGCGCCAGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTG<br>GCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGG<br>AGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATC<br>ACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCT<br>CTGCCCGGCCGAGACCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGT<br>CCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCA<br>TCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCCCTCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCA<br>GCCCCCCCACCCGGCCAGCCGCCCCGTCGGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAG<br>CCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGA<br>CAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGGTGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTA<br>ATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTATTGTCCCATGACCCTGCGAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAACAAC<br>CAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAAAAGAGGTTTAA</u></font>ttggttcatggttacataggctatacaggaagcacaatgctggcatgtgcttggcttctggggggc<br>ctcaggaagcttccaatcatggcggaaggcaaaggggagcaggtacttcacatggctggagcaggaggaagagagggtggaggtgccacacacttttaaa<br>caatcagatcttttgagaacttatattgtgtgaacagcactaaggggatggtgccaaaccattcatgagaactgcccccgccccgccccgccccacaatt<br>caatcactttccaccaggccccacctccaacactgaggattacaattcgacatgacatttggaggggacacagttccaaatcgtatcacagaccatattt<br>agataataggcaaaaca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	55254253	55256555	3000033	0	-	EGFR; H7_F_61; RIP_SVA_chr7_055_01	GGGATAAATTCTCTTGTGGGACTGAG	GTGAGATACTGATCCAAGTCTCAG	OTHER	SVA	SVA_F	tgtctatattaaaactctccctctctctctatataatcacttattatttccttagttgtaattctttcactgttcaattagaactttactaaattattat<br>atgtctttcttttggttaaggtagtagatgaagtttgaaatcatcttttattctggaatgctagtgggcctttctcaactaaggtcccaggagagaacta<br>agccctacaaaaaacaaataggtgaccgttgtctctattcccccaaggatgatgcataactagcacaattctagaagggtaggagagaaggtattaatta<br>ttttcagtagattcctgcatgcatcagggataaattctcttgtgggactgagaacacccaacaccctgctgcttcaactcccttt<font color="green"><u>TAAAAGCACATTGCA<br></u></font><font color="red">GAGTTGCCAATTAGCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCC<br>TCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCGTCTCCGTCTCCGTCTCCCTCTCCC<br>CACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAG<br>TGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAG<br>TGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATC<br>TCGGCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAG<br>GAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCG<br>CCTCTGCCCCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTG<br>AGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCCCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCG<br>CCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCCGCCCGGCCAGC<br>CGCCCCAACCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCGGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCTGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGG<br>CCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGA<br>CATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAAC<br>ATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCAC<br>CAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGC<br>TGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAA<br>AAA</font><font color="green"><u>TAAAAGCACATTGCA</u></font>actctttctgttgctggttcctgtaagcaatacatttaaaaatattatttgtttcttaggatttaaaatgtgttgtattgaa<br>acgttgacccatcatggctgagacttggatcagtatctcacttcaggaaacaggactcaagctgggcgcaggggctcacgcctgtaatcccagcactttg<br>ggaggccgaagtgggtgaatcacacggtcaagagattgagaccatcctgaccaacatggtgaaaccccgtctcaactaaaaaagcaaaaattagctgggt<br>gtggtggctggtgcctatagtcccagctactctggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcatgcca<br>ctg	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr7	100787987	100790515	3000034	0	-	FLJ14117; RIP_SVA_chr7_100_01	CAAGTGACTCTCCTGCCTCAGCC	CTCACGCCTGTAATCCCAGCAC	OTHER	SVA	SVA_D	ggccaggagttcgaggccagcttggacaacatagtgagacccccccatctctacaaaaaaaaaaaaaaagcaaagcgtggaggtgtgtgcctgtagtccc<br>agctactcaggagtctgaggcaggaggattgcttgagcctaagggttcaaggctgcagtgagccatgatggtgccatgacacttcagcctgggttacata<br>ctgagcctgtccttctcccctcaaagaaggattgtaggattgttgttagaagacgacaggaagatggccaagcatggtggctcacgcctgtaatcccagc<br>actttgggaggccaaggcaggtaaatcacaaggtcaggagctcgagaccagcctgcccaacatggtgaaaccccgtctctact<font color="green"><u>AAAAATACAAAAATTGG<br></u></font><font color="red">ATAACTAGCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTGCCTCTGCCTCTCCCTCTCCCCTCTCCCCTCTCCCTCTCGGTCTCC<br>CTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACTGTACTGCCTCTGCCTCTGCCTCTCCCTCTCCCCTCTCCCCTCTCCCCTC<br>TCCTCTCGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCTGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCT<br>GCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCAATTGCAGGCGCGCGCCACCACGCCTGACTGGTTTTCATACTTTTTTGGTGGAGACGGGGTTTC<br>GCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTTGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTGGTTCACTCA<br>GTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCGCTACAACCTCCATCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCAAGAT<br>TGCAGCCTCTGCCCGGCCACCACCCCGTCTGGGAAGTAAGGAGCGTCTCTGCCTGGCTGCCCATCGTCTGGGACGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCGGCAGCCATCCCATCTGGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCGCCTCTACCCGGCGGCGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCAGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCCGCCCAGCATCCGCCCCATCTGAGAAGTGAGGAGCCCCTCCG<br>CCCGGCAGCCGCCCCGTCTGAGAAGTGAGGAGTCCCTCTGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCCCCGGCCCGGCCAGCCGCCCCGTCCGGAGGGAGGTGGGGGGGTCAGCCCATCCGGGAGGGAGGTGGGGGCGGTCAC<br>CGCCCGGCTAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTG<br>CCCGGCCAGCCACCCCGTCCGGGAGGGAGGTGGGGGTGTCAGCCACGTCGGGAGGAGGTGGGGGGTCAGCCGCCCGGTCCAGCCGCCCCGTCTGGAGGGA<br>GGTGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCAGG<br>CCAGCCACCCCGTCTGGGAGGGAGGTGGGGGGCTCAGCCCCCCGCCCGGCCAGCCGACCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCAGCCCGGCCAGCCGCCCTGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCAGCTGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCACCACCTCGTCTGGGAGGTG<br>TACCCAACAGCTCATTGAGAACGGGCCGGGATGACAATGGCGGTTTTGTGGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTG<br>CCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGATAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTA<br>CCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGG<br>CAGCATGCTCGTTAAGAATCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGA<br>GACCTTTGTTCACTTGTTTATCTGCCAACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAA<br>AAAAAATAAAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAAAATTGG</u></font>ctgggcgtggtggcgggcgcctgtaattcccagctactcaggaggctgaggcag<br>gagagtcacttggacctgaaaggcggaggttgcagtgagccaagatctcgccactgcactccagagcaagactctgtctcaataaataaataaatggaat<br>gtccatacttcccaagtcccaagtctctgtcttaaactcagagttggtcatctaggagtaaacagcctcctaatggaattgcttcgttcctctcgccctc<br>cttccctcccttgaggcctaaaagatttggagaatttaggttatcaggggatgttcagtgcctcccccaaaaagaatctgaactgtgctccttgggcagt<br>tggccaacacctaataaatgatgaggtca	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intergenic
0	chr8	85915630	85915631	3000035	0	-	TNKS; RIP_SVA_chr8_048_01	GGCAGCCAGAGAGAAAGGTCGG	GAGCTCTTTTAGGGCAGGCCTG	OTHER	SVA	SVA_F	tgggtttcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttaattggagcatttagcccatttatatttaagg<br>ttaatactgttatgtgtgaatttgatcctgtcattatgatgttagctagttattttgctcattagttgatgcagtttcttcctagtcttgaaggtcttta<br>caatttggcatgtttttgcagtggctgttaccggttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacaaaa<br>tctctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggtt<font color="green"><u>GAAAATTCTTTTCTT<br></u></font><font color="red">GGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCTGGGAGGCA<br>GCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTG<br>CCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAG<br>CGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCA<br>TCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTC<br>TCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCT<br>GAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGG<br>GGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCC<br>GGCCAGCCGCCCCGTCCAGGAGGGAGGTAGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAG<br>GTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGG<br>TTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACC<br>TTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGA<br>AGGCAGCATGCTCGTTAAGAGTCGTCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGTGGGGTCCTCTGCCTAGGAAAACC<br>AGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAA<br>TAAAAAAATAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATTCTTTTCTT</u></font>taagaatgttgaatattggcccccactctcttctggcttgcagagtttctgccgag<br>agatcagctgttagtctgatgggcttccctttgtgggtaacccgacctttctctctggctgcccttaacattttttccctcatttcaacttcggtgaatt<br>tgacaattaggtgtcttggagttgctcttctcgaggagtatctttgtggagttctctgtatttcctgaatttgaatgttggcctgccttgctaggtttgg<br>gaagttctcctggataatatcctgcagagtgttctcccacttggttccattctccctgtcactttcaggtacaccaatcaggacgtagatttggtctttt<br>cacatagttccatatttcttggaggcttt	Other	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Reference	NA	NA	NA	NA	NA	intron:RALYL:NM:001100391:4/9
0	chr9	33413377	33414654	3000036	0	+	AQP3; RIP_SVA_chr9_033_01	NA	NA	OTHER	SVA	SVA_E	aggaatatgagaaatatccaggtttgttttaatttttaatcctttatatatttacctttttttttttgagacagggtctttgttgcctaggctggagtgc<br>agtggcacgatcttggctcactgcaacctctgcctccctgattcaagcagttctcatacctcagcctccggagtagctgggattacaggcatccgccacc<br>acgcctggctaattttcgtatttttttgtaaagacagggttttgtcttgttggccaggctggtcttgaattcctgacctcaagtgatctgcccgcctcgg<br>tctcccaaagtgctgggattacaggtgtgaactaccaccctgcctatatttacctcttgaatccatcgattttatggcatgaggt<font color="green"><u>AAGAATCTAGTTTTT<br></u></font><font color="red">CGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGGGGTGGAGGGGTCAGCCCCCC<br>GCCCGGCCAGCCGCCCTATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGTGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAG<br>GGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTT<br>CTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTGAATGGATTAAGGGCGGTGC<br>AAGATGTGCTTTGTTGAACAGATGCTTGAAGGCAGCATGCTCGTTGAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAA<br>GGCAGCGGGGTCCTCTGCCTAGGAGAACCAGAGACCTTTGTTCGCTTGTTTGTCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCC<br>TTCTGCGAGAAACACCCAAGAATGATCAATTAAAAAAAAAAAAACAAAAAAACAAATATTTACGTATGATAATGAGAAGAACACTGTCCTAGATGGCTGA<br>AATGCTAATAGTCTTTAATTCACTATTTTCTTATTCTGACTGTTGCAAAGATTTGTAGTTTTATTGATGATTCTCACTCATGTTCTAAAATAGGAGTTGG<br>CAAACTATTGGCTGCCTGTGTTTATGAATAAAGTTTTCCTAGAACACAACAACAAAAAAAAAACAAACAAAAAAAAAA</font><font color="green"><u>AAGAATCTAGTTTTT</u></font>gctttcc<br>agaggtgagaagaaggggtcttcttcaggaaccccgagccccatcctcttagccctcagtttatgttttttttttattctttatttttttgattcttttt<br>tttttttttttgagacggagtatcgctgtgtcgcccaggctggagtgcagtggcccgatcttggctcactgcaacctccacctcctgggttcacgccatt<br>ctcctgcctcagcctcctgagtagctgggactacaggcgtccaccaccacgcccggctaattttttgtatttttagtagagacagggtttcactgtgtta<br>gccaggatggtctctatctcctgacctcatgatccgcccgcctcggcctcctgaagtgctgggattacaggtgtgagc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intron:SUGT1P:NR:003667:5/7	
0	chr9	83514184	83516746	3000037	0	+	BC036431; RIP_SVA_chr9_081_01	NA	NA	OTHER	SVA	SVA_F	gtcaagaccagcctggccaagatggtgaaaccccgtctctactaaaacaaaaattagccaggcgtggtagcgggcacctgtaatcccagctactcgggag<br>gctgaggcagagaattgcttgaacctgggaggtagaggttgcagtgagccgagattgcaacatgcactccagcctgggcgacagagccagattccttctc<br>aaaaaaaaaaaaaaaaaaaaaaaagatattgaaacagcttgaagcaagacctgttctttctagggttctcagtctcttttggagttagtttcggtgggct<br>ttaccaacggaagggagaggtaaacatggctggagggtatgcctggcagtagatttgggagagggaatttcttctcctgcacatc<font color="green"><u>TAAAATGGCTCTAGC<br></u></font><font color="red">GCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCGTCTCCCTCTCGC<br>TCTCCGTCTCCCTCTCGCTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCATCCTCCC<br>TGCCTGATTCTCCTGCCTCAGTCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACAGGGTTTCGCTGTGTTGG<br>CCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATG<br>GTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCT<br>GCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCTGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAA<br>AGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCACCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCC<br>GGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTG<br>AGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCC<br>ACCCCATCTGGGAAGTGAGGAGCATCTCTGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCAT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCCCGCCCGGCCAGCTGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTCCCGGCCAGCCGCCCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCA<br>GCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCC<br>CGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCG<br>TCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCGGCCCCCCGCCCGACCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGTGTC<br>AGCCCCACGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCCCGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGG<br>CGGCCTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTC<br>ATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCAC<br>TCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCA<br>AGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAATAAATAAATAAATAAATAAATAAA<br>TAAATAAAATAAAAAAAAAAAAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TAAAATGGCTCTAGC</u></font>agagccctctttgccctcatac<br>ttccgtcccctttgtaccttccacttgactaccccctcaccaccctgcattcccctcagtatactaatctgggccacatttatcagcgtgtgtcattact<br>gttcattaaagttgagaaaccacattccattttactctttcttacctcctgccaccccaaaggatcaagctagtcttccttgtacattctgatgctgctt<br>agactcaggaaagaaacagaagtggaatgccctgctcaggagttccggccttggccatatcttctcctaaaaattaaccagagttggccgggtgcagtgg<br>ctcatgcctgtaatcccagcagtttgggaggctgaggtgggcagatcacgaggtcagaagttc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr9	109073276	109075265	3000038	0	+	RAD23B; RIP_SVA_chr9_107_01	NA	NA	OTHER	SVA	SVA_D	ctgctgggatgggcagtgttgactccagacctgcccattaggttggttgaaactgtctgatctacatcacagtctgactctctctctctgcccaattgtg<br>cttcctttctactttcctttcaaaggaaatattatcaccattgtctaaaggctttccttaccaaatcctgcttcctcccttctatttttcacaactgata<br>accatcaaaaaaaaaaagactactattcctaactgttttggtgtctgcttcccaggtacctgaacttacacagtgactgaacaacaaataagagatttac<br>aaggatgagaaacttgagctgtaagcagcaggatggaggttgaagaagcccgaagtctaagaagacaaagattataataataataat<font color="green"><u>AATTATTATTATT<br></u></font><font color="red">GGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCAGGATGGCAGACGGAGTCGCGTTCACTCAGTGT<br>TCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCTGCCTGCCTTGGCCCCCGAAAGTGCCGAGATTGCA<br>GCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGTAGCCTCTCTGTCTGGCTGCCCAGT<br>CTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCTGCCGCCCCGTCTGGGATGTGAGGAGCGTCTCTGC<br>CCGGCCACCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCGCCCCGTTTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACACCGTCTGAGAA<br>GTGAGGAGCCCCTCCGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCCTCCGGAAGGGAGGTGGGGGGGTTAGCCCCGCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCG<br>CCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGG<br>GAAGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGAGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTATCAGCCC<br>CCCGCCCAGCCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCACGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGC<br>CGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCAGCCAGCCGCCACGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCA<br>GCCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACC<br>CCGTCTGGGAGGTGTACTCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAG<br>AAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTT<br>GATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTGAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAA<br>CAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTTTAC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTGTGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCA<br>AGAATGATCAATAAAATAAATAAATAAATAAATAAATAAAATAAAATAAAATAGCACAATTATAACAATATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AATTATTATT<br>ATT</u></font>attattattcttattttgagacagggtctcatgctgtcacccaagctggagtgcaatggcacgatcacagctcactgcagcctcaacctcccaggct<br>caagtgatatttccacctcagcctcctcagtagctgggatcacaggcatgtgccaccacacccagctaatttttttttatttttttgtagaggcggagtc<br>tccctatgttgctcatgctggtctcaaactcctgctggatcactcaagtgatcctcccacctcagcctcccaaagtgttgggattacaggcgtgagacat<br>gatgcacagtctgacaaaaggtatttttaaagtttaattgttgcaggctgaaactgtttttaagtgtttaattgtgggatgctgaaatgc	UCSC	<UL><LI>Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE. Natural genetic variation caused by transposable elements in humans. Genetics. 2004 Oct;168(2):933-51.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15514065">PMID:15514065</a>.</LI></UL>	C:Reference	NA	NA	NA	NA	NA	intergenic	
0	chr1	156917082	156917083	3000039	0	-	Alpha spectrin; RIP_SVA_chr1_155_01	AACTTAGAATATTTAGCT	TGCATTTTGACTTAATTTAT	OTHER	SVA	SVA	ctgatatgttgaattgagtagaaacaggatgaatttatccctcatgtttcaaaacacaaaagggtactttcagggtctcttgccagtaatgccacaaact<br>tgctaaagaactgcccgaaagagcactttcccttgtgccaaggtgctaccttaacaaatatacttctgctgctggccttttccaggagagcttctcccag<br>tctcccccagtatctccatttgagttatcctgggaatgcaagcaggagttttgagtttttgacctacagaaactcctaaatgtttgctggcaactcaatc<br>aacttctgtgtctacaggaggctatagcgacatcagtggagctaggtgaagactgggagcgcaccgaagttctgcataa<font color="green"><u>GAAATTTGAAGACTTCCAAGT<br></u></font><font color="red">TGCATTTTGACTTAATTTATGAGTATTTATTTATTATGAGCCATTTGACAGCATGCAAGACACAACACAAAACATAATACATGTACATCACATAAATATA<br>TCTAAACATGAATACATATCCACAAAGATCCAATAGTTTCACCTTAGAATTCTAGCTGTAAGATAGCAATATAACTTAAGATTCTATATAAGATCACTGG<br>ATAAGAATTATTTTTCTGTCAAAATTGAAATCTGTTTACATGGCTAAATTTTGTTTGCCCTATTGGGTAATGTAAGGAAAGCTGTAGACCAAAATTTGGG<br>TAGAGCATCTTTAGGACAGTTTGGCAATCTTATAACTGGCTTTAAAGTCACTGGTAAATAAAATAAAATAGCTTCAGAATCATCAGCATTCATTTTTGTT<br>TAGGTAGGAAAGTTTTATATATGCCTGTTGGATATTTTAAGGTGTCAGGGTTTGACACAAAGGTTGTGAAACTATAAACCTAGACAAAAACAGAGTAATC<br>TTTGTGTAATTTTTTAAACAAAGACTAATTTAATGTTGTTGGTTCATAAACAGCTAAATATTCTAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA<br>AAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAATTTGAAGACTTCCAAGT</u></font>ggagctggtagctaaagaagggagagttgttgaagtgaaccaatatgccaatgagtgtgc<br>cgaggtgaggtgggagcaaaatattcactccgtgcaaagggttcttatccttaagaataacttctggccattagtagatggatatgaaggagatggggca<br>ttgtgagaaaacagaggttggcatgttcctggagtaacatattctgaacagtttcctctcccctctggacccaccccttacaagtctattgaaatggagg<br>gttgagagagaaagagagagtgtgtttttgtgtgtttggagaaattaaatacacaatgggcagtgaagctattgccatttatatagtagcttctgtacca<br>tgcagtacactgattactc	Other	<UL><LI>Hassoun H, Coetzer TL, Vassiliadis JN, Sahr KE, Maalouf GJ, Saad ST, CatanzaritiL, Palek J. A novel mobile element inserted in the alpha spectrin gene: spectrin dayton. Atruncated alpha spectrin associated with hereditary elliptocytosis. J Clin Invest. 1994 Aug;94(2):643-8.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8040317">PMID:8040317</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	50	NA	NA	Hereditary elliptocytosis	exon:CDS:SPTA1:NM_003126:5/52
0	chr9	107441759	107441760	3000040	0	+	SVA-FCMD; RIP_SVA_chr9_105_01	NA	NA	OTHER	SVA	SVA_E	cttccactatcattaagacctgggctagatcacctctaacatctcactcagggaaggcaatgtgttgccataaaaagaccacaagcttttgagttaggcc<br>tgaatttgaatttcagcttaatcatgtgggatttatggtgggggccctttcagtctcaatttccacattagtgaactggggaaatgatacatacttctaa<br>gggtttttagggggattaaatgaagtatacagttcttagcctcaggcctaggattaagtaagtactcaagaaatgtgcaattttctagttccatgtttct<br>tttctaatcttcaaatggaattatagaaaccatgggtcagaacatattcctttactcaaaagattgcatgactgaatttgctt<font color="green"><u>AAGAAAAAAAAAATTGT<br></u></font><font color="red">GTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCT<br>CTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCC<br>CTCTCCCTCTCCCTCTCCCTCCACTGTCTCCCTCTCCCTCTCCCTCTCCCTCCACAGTCTCCTTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGAC<br>GGTGCTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTACGCCTCACTGGTTTTCGTTTTTTTTTTGGTGGAGACG<br>GGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCACGAGTGATCCGCCAGCCTCGGCCTCCCGGGGTGCCGGGATTGCGGACGGAGTCTCAT<br>TCACTCAGTGCTCAGTGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAGCCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCCAAAGTG<br>CCGAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCTCTCTGCCT<br>GGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCTTCCCATCTAGGAAGT<br>GAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGCCGCAA<br>CCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCC<br>CCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCGGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGTCGCCCCGTCCAGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCCAGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGTGGGGGTCAGCCCCCCGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCTGGG<br>AGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCT<br>CTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCC<br>GCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGTCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCC<br>TGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGG<br>GAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGACCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGCGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGG<br>CCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCTGTCCGGGAGGATGGT<br>GGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCG<br>GCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAA<br>AAAATTGAGAAATCAGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGG<br>GATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGC<br>TTTGTTAAACAGATGCTTGAAGGCAGCATGCTGGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCACAGG<br>GTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAG<br>AAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAAAAAAAAAATTGT</u></font>atcaagtcattaatacaattatacattaattatattac<br>attaatacaatatatggtttgtgaattcagagacattaccagtttgcctccttctctcaatagaacttgtattttcattttcttggttaagcagttgtct<br>cctaatattatcccatatgctacctagtttgctggtcccaagcagtttactgtacttcactagatttggtacctgctctcccctggacttctttttcaat<br>attctagcctttcctagatgtaaatctttacctccttgttagtgaaattagatataagccatgatttggagagggaagaaatctggaatacttaatttca<br>tttaattatctatgctgatgaatgcctgtatcattgttaataaag	Other	<UL><LI>Kobayashi K, Nakahori Y, Miyake M, Matsumura K, Kondo-Iida E, Nomura Y, SegawaM, Yoshioka M, Saito K, Osawa M, Hamano K, Sakakihara Y, Nonaka I, Nakagome Y,Kanazawa I, Nakamura Y, Tokunaga K, Toda T. An ancient retrotransposal insertion causes Fukuyama-type congenital musculardystrophy. Nature. 1998 Jul 23;394(6691):388-92.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9690476">PMID:9690476</a>.</LI></UL>	E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Fukuyama-type congenital muscular dystrophy	exon:3UTR:FKTN:NM_006731	
0	chrX	100501743	100501744	3000041	0	-	Btk; RIP_SVA_chrX_100_01	TGGATGAACTGCCACATT	CCTCACTTATGCAAGGAG	OTHER	SVA	SVA	gcatcctcatcagagactgttcttcccacaccagactgaacatgctctccctccaagtacttcccagcgtgcagctccctatacatggcctctgccacat<br>ctctgagcctctgttgttgggcacatataaccaatgcaacatgtgcataagctctgcacctcactggctcactgcctaaccatgcatcagagacatgatt<br>gtctttgagggaggtgcatgatacatatacctccatttgagatttgttctgagctcagggacgtgggcatatgaatctgtctcctggaggctggggaggt<br>gctggatgaactgccacattgtttccttcacaggcaggaaggctacattcctagtaactatgtcactgaagcagaagactccata<font color="green"><u>GAAATGTATGAGTAA<br></u></font><font color="red">NNNNNNNNNN</font><font color="green"><u>GAAATGTATGAGTAA</u></font>gtatgtttatgtcagtccacaatcttccaggaggaactctctctctctatatatatatatatttatttatttata<br>tatattttatatatatttatatatatatataacacacacaagtgtatatatgtatacatatgtatacatacactggtgtatatataggtatattatgtat<br>acatacacaagtgtgtatatatatatatacacttttttctactttcaacatattttttatttcaagatatatattaaaattagtaccatctgaatcaaat<br>gatgccaccacctcaaattagtgtatctgtcttacctttaccccccaaacaccctccatttatgagagctggagaggtcaccatgccctcaaatccagaa<br>gaatcacact	Other	<UL><LI>Rohrer J, Minegishi Y, Richter D, Eguiguren J, Conley ME. Unusual mutations in Btk: an insertion, a duplication, an inversion, and fourlarge deletions. Clin Immunol. 1999 Jan;90(1):28-37.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9884350">PMID:9884350</a>.</LI></UL>	E:Insertion-specific detection:PCR;E:Library screening:TE-specific hybridization	NA	NA	NA	NA	Immunodeficiency X-linked Agammaglobulinemia (XLA)	exon:CDS:BTK:NM_000061:9/19
0	chr1	46478472	46481213	3000042	0	+	H1_F_95; RIP_SVA_chr1_046_01	GTGGTGGAAAACAACACAAATG	GaAGGAATGAGGATCACCAAAA	OTHER	SVA	SVA_F	tgaggacccttgtgattacagtgggcccatccagataacccaggataatctccccatcaaaaagtcagacaattggctgggtgtggtggctcatgcctgt<br>aatcccagcactttaggaagccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaat<br>acaaaaattagctgggcatggtggcatgtgcctgtaagtccagctactagcggggctaaggcaggaggatcgcttgaacctgggaggcagaggttgcagt<br>gagccgagattgtaccactgcactccagcctgggcaacagagtgagattccatctcaaaaaaataaaataaaataaaataaaat<font color="green"><u>GAAAGTCAGACAATTA<br></u></font><font color="red">GGGAGCCTGTCTGGCCATGGTGGCCGCGGCTGGTGGTTGGCGCGGCTGCGCTGCGGCCCGGGGCAGTGCGGAGCCAGGACAGTCGCGGCGCTGACGCCCG<br>CGGGCCCCAGCTGCAGATATGAAGCGGAGCCGCTGCCGCGACCGACCGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGC<br>TGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCC<br>TGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGA<br>TGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGGGAGGAGCGCCTCTTCCCAGC<br>CGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGG<br>AGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACC<br>CCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCGCCCCATCTGGGAAGTGAGGAGC<br>GTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGTCAGCCCC<br>CCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCC<br>GGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGAGGTCAGCCC<br>TCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>AGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGGGT<br>CAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGC<br>CCTGTCCGGGAGGGAGGTGGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGTTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGG<br>GGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGC<br>CACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAA<br>GATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGA<br>TCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTT<br>TGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGT<br>CCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAA<br>ACACCCAAGAATTATCAATAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGTCAGACAATTA</u></font>acaacctaattccatctgcagtcttaattcttctttgctagg<br>taacctatcatcttccagattctggagattgaggcatgactttttttttttttgagacaggatctctctctgttgcccaggctggagtgcagtggtgtga<br>tcttggctcactgcaggctcaacctccggggctcaagagatcctcctactgtacctcccaagcagctgggactacaggaacagcccacaccaccacactt<br>ggataacttttgttcattttttgtagagatgaggtctcactatgttgcccagggtggtcttgaattcctggactcatgcaattctcctgcctggcctcct<br>aaagtgctgggattacaggtgtgagccacccagcctatgaat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3791	1345	NA	intergenic
0	chr1	86453329	86455611	3000043	0	+	H1_F_127; RIP_SVA_chr1_086_01	TGCGCAATTCATAGTGTTTAGG	TCTTCAGCAGATTCTCATTTGG	OTHER	SVA	SVA_F	aaaaacaatgaaaggaacataaaatgacaccagggataaggataattttaaacatgtttctttctacccatgtgttttctaagagtaggttattatttgt<br>ctcaatgttttaataacaagaactaaaaaaaaatgaatcaattgcgcaattcatagtgtttaggtaaaaactgacctattgcttagaagtcattcttaga<br>attaagactaaaatggaattgctcttatgtccctaataaagatgacacaatttaatatcataaagattcttcttaaagacaaatttattcaggccatggt<br>atggctgataatatcacaccgagagctaaagcaaggggccagcctgcaaggcactttcctggagtgctagtttataagaaacatt<font color="green"><u>AAAACATTGTCTTTG<br></u></font><font color="red">GATCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTCCCTCCCCCTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCAT<br>GCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCGAATGCCTGCGATTGCAGGC<br>ACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGG<br>CCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACTT<br>ACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGC<br>CGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGG<br>CGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAAGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCC<br>CATCTGGGATGTGAGGAGCGCCTCTGCCTGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCT<br>CTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCAT<br>CTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGGCCCGGCCAGCCGCCCCATCCGGGAGGG<br>AGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGTGA<br>GGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCTATCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCAC<br>CCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCC<br>GGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAG<br>GGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGAGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCT<br>CTGCCCGGCCAGCCGCCCCGTCCTGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGC<br>GGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCA<br>TTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACT<br>CAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAA<br>GTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACT<br>ATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAA</font><font color="green"><u>AAAACATTGTCTTTG</u></font>at<br>gaattagaaattcagtaccagttgactcagaattttatatgtgacttcatacatatctagtaaaacagaaattgatcttaccaaatgagaatctgctgaa<br>gaaattgtccccttggggactcaggagggaagatggggaggtggatgagggatgaaagactacatattgggtacaatgtacactgcttgagtgatgggta<br>cactaaaatctcagaaatcaccaccaaagaacttacccatgtaaccgaaaaccacctgtaccccaaacactattgaaataaaaataaaaataaattgttt<br>ccttaggtcacagtagagggaaaaatgccacaccttatctcctagttcaatcttttgaagtacatataaataagttttatggt	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2660	465	NA	intergenic
0	chr1	45461244	45462154	3000044	0	+	H1_E_89; RIP_SVA_chr1_045_01	GGAGCTGCTAACGCTAATGAAC	AGCTCATGAGGCACCATTTATT	OTHER	SVA	SVA_E	ctctcaaataaatgtggttatgttatacattattttaatggacactctcgctttatttatttatttatttattttgctgatgacattacttgctgtttat<br>tttatgtttattttagactatggaaatgatgttagacaaaaagcaaatttgagcaattttcctattcaagttcaaaaatgtcgtaaagcagcagagacaa<br>cttgcaacaatgcatttagcccaggagctgctaacgctaatgaacgtacaatgcagtggtggttcaagaagttttgcaaaggagacaagagccttgaaga<br>tgaggagcacagtggctggccattgggagttgataatgaccaaaagagcgcaaacatcgaagctgatcctcttacaactacacaat<font color="green"><u>AAGTTGCCGAAGAA<br></u></font><font color="red">GGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCTG<br>TCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGG<br>ACCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGA<br>CAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTATGTGGATAGAAGTGGACATGGGAGA<br>CTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTA<br>ATCTTAAGTACCCAGGGACACAAACACTGCAGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTACTGACCTTCC<br>CTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAATAAATAAATAAATAAATAAATAAATAAA<br>TAAATAAATAA</font><font color="green"><u>AAGTTGCCGAAGAA</u></font>atcaacgtcgacgattctatgttcatttggcatctgaagcaaactggaaaggtgaaaaagttcaataaatggtgc<br>ctcatgagctgactgaaaatcaaaaaaattgttgttttgaagtatcatcttctcttattctacccaacaacaacgaaccatttctcgatcagattgtgat<br>gtgcaacgaaaagtggattttatataattggcaatggccagctcagtagctggaccaagaagcagctccaaggcacttcccaaagccaaagttgcaccaa<br>aaaaaggtcatagtcactggtctgctgccggtctgatccactacagctttttttttttttttttttttttttgagacagggtctcaatctgtcacccaag<br>ctgaagtgcag	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	1187	276	NA	intergenic
0	chr20	52299660	52300749	3000045	0	-	H20_E_91; RIP_SVA_chr20_052_01	GATGAGTGGCAAGTTCATCAAA	AATGACATAAGGCTGCCAACTT	OTHER	SVA	SVA_E	ttgaacaccatggagatgaaagattaaaaaaatgaaaaaaaaaaatctggctacaaactttggtgtctatatggagagctgtctatatggagagctgtct<br>ctcaactcaagtatgttcttgacatgtctagaggtcctgagtttccttatctgagggtgggaatggaggcaggagcacagatggaagggtaggtagaagt<br>atcaatgaggacagctggcatctttgcatgctacggcctctccgtaggacaccaaatttccagttaaagttcttcattggagtgactcatttagtaacac<br>tggtttttaggttcatattgtctgagttcaactcttagctccacctcttactagttgtgtaatcttgatgagtggcaagttcatc<font color="green"><u>AAAAGATTCCCTCTC<br></u></font><font color="red">GAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCTAGCCGCCCTGTCCGGGAGGGAG<br>GTGGGGGGGGTCAGCCCCCCGCCCGACCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCC<br>GGCTGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAG<br>GATGGTCGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTC<br>TGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGT<br>GGGGAAAAAATTGAGAAATCAGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTG<br>CCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAG<br>ATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGC<br>CGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTC<br>TGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAATAAAAAATAAAAAAATAAAAAAATAAAAATAAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAGATTCC<br>CTCTC</u></font>cttttctgtaaaatggggtaacactactaccttccacacttcattgctgtgcccagttatttgaaagccaatcccacgcttcatgccatttcatc<br>cctgtgtactccaatatacatctctaagcaaaactgacattttcagatataatcatatttccattgtcacactaagtattaataattccattgcattatc<br>taatatccagttcatatttaaatgttttcacctatcttgaaggtgtctttttgcagacagcagatttattacttgaaatatccaatatgacaaaataatt<br>aagttggcagccttatgtcattctccagtagtaagaagaaaatgcagagaaaaaaacctaattctctgaaatccaaaaatatagatgccc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	1456	363	NA	intergenic
0	chr2	10959523	10961504	3000046	0	-	H2_F_9; RIP_SVA_chr2_010_01	TTTGTCTAGACGGCAAATGATG	GCTGTTCAtGCCCAATAATGTA	OTHER	SVA	SVA_D	cttctatgagaattatacatttcatgatgccatgggggaagggacgtagagcacaaaatctattagacatagaagaagcagcaattttaccttgcgggtt<br>tcttatttaaataaagggtgggggaacagtttatttaggcataatgggaagtagttgtttgagctgcattttctcattaaaaattttttttatttgttga<br>acaataccattttgggctacagaatgctagatttctatggcagtaattaaaaccagtgcctgtgtatctaagtgatttgtctagacggcaaatgatgcaa<br>gctgtaatctattcctttttatgggctaatcagttctgctcagttaaaatttccttgtgttttgctgaattgaataatacctttcatt<font color="green"><u>AAGATTCAGTTC<br></u></font><font color="red">CCTCTCCCTCTCCCTCTCCCTCCCCCTCCCCCTCTCCCTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTCATGC<br>TGAGCCAAAGCTGTACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGACTCAGCCTGCCCAGTGCCTGCGATTGCAGGCTC<br>ACGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGATTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCAAGTGATCCGCCAGCCTCGGCC<br>TCCCGAGGTGCCGGGATTGCAGACGGAGTCTCCTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTGC<br>ACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCG<br>CCCATCGTCTGGGTTGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGCCATCACGTCTGGGAAGTAAGGAG<br>CATCTCAGCCCGGCTGCCCATCGTCTGGGATGTGAGGAGCGCCTCTGCCAGGCCGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCTGGCCGCCATCCCA<br>CCTAGGAAGTGAGGAGCACCTCTTCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGTCGCCCATCGTCTGAGATGTGGGGAGCGCCT<br>CTGCCCCGCCGCCCCGTCTGGGATGTGAGGAGCACCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCGCCCCATCTGGGA<br>AGTGAGGAGCGTCTGCGCCCGGCAGCCAGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGTCAGCCCCCAGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGACGCCCCGTCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCAGCCCGGCCAGCCGCCCCGACCGGGAGGGAGGTGGGGGGGTTAG<br>CCCCCCGCCCGGCCAGCCCCCCCATCCGGGAGGGAGGTTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCC<br>GGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCAGGATGACAATG<br>GCGGCTTTGTGGAATAGAAAGGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTT<br>CATTTTGTTCTGTACTAAGAAAACTTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCA<br>CTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAAGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTC<br>AAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCA<br>CTATTGTCCTATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAATAAATAAATAAAAAAAA</font><font color="green"><u>AAGATTCAGTTC</u></font>tgtact<br>ccattgaaaatttacatttcattttttgctgtgtacccatcggtatcagggagctgccccgtccccacccccgctccttctcctcatcatccccctcccc<br>tcatcatcccccttccccacctccaccaagaagagctgattgacagaaagacccagctggtctactcctgtctgaataccatggcccctggaagtcaagt<br>gcatgaggcagctgggtgggaggcggtgctggatggaggtgggtagagaaggatgtcaaactgaatcatcaggaaacttcatttttttcaccccagcttc<br>taagcattttttttcttttctatgcctcaattttttcatcagtaaaatggagctaatgactctttccttcctggctataaga	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2544	585	NA	intergenic
0	chr2	41826661	41829369	3000047	0	+	H2_F_56; RIP_SVA_chr2_041_01	GGGTAGGCTAACTGCTACAACG	ACCAAACAGGAAaTACCCTGAA	OTHER	SVA	SVA_F	cacttataagtgaacgctaagctataagtacacaaaggcatacggagtgatataatgaattttggagactgagatgggaaggaagggataggagtgtgag<br>ataaaaaaaaaaactacatattgggtacaacatacactgctcaggtgatgggtgcgctaaaatctcataattcaccactatataattcacccatataacc<br>aaaaaccacttgtactccaaaagctatccaaatttttaaaaatattttaaataaaaaattatcctgcatttgtcttatcctttttgcatatgaactgctt<br>taatagattaagagtatttatttgtaccaattttttatttgttagggtaggctaactgctacaacgaatataccccaagatgtgt<font color="green"><u>AAAAACCTCACATGC<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCGTCCCTCCCTCTCCGTCTCCGTCTCCGTCTCCGTCTCCCTCTCCC<br>CACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAG<br>TGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGACCGGTCTCCAGCCCCTAACCGCGAG<br>TGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATC<br>TCGGCTCACTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAG<br>GAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATC<br>CCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCG<br>CCTCTGCCTCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTG<br>AGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCG<br>CCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCATCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CGGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGG<br>GAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCAAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAG<br>GGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCTGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCACCC<br>GGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGTCAGCCCCCCGACCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAA<br>CGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAG<br>TAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTG<br>AAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCA<br>TCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTAT<br>CTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAA<br>AAAAAAAAA</font><font color="green"><u>AAAAACCTCACATGC</u></font>aattagagtccatttccctctcagataaaaagttcagggtatttcctgtttggttccacagaattgtatggggctt<br>cagaatgatggaggctctgccatcctcaccatatggtattttgtcctagcgtcaatatgttgtaggcaaggaggaaaagggcagatagaattaggtttag<br>gagatttaatggggcagacctgggagggaggcatagctcttcctctcacattccattagctacactgaactttaggagaaactcagaaatgtaatctagc<br>tatatatctcggaaaaagagggaatggattttcatagcatctaagtctttcttcccagaagtcatttaaaattaattattttgaaatcaatttctgacca<br>ttattgggg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2834	114	NA	intergenic
0	chr2	48635357	48638371	3000048	0	-	H2_F_76; RIP_SVA_chr2_048_01	GTCTCCAAGTCTATGGGGAGTG	CCACGTATGCGTTTCTACTCAA	OTHER	SVA	SVA_F	gcctcagcctgccgagtagctgggattacaggcatgtgccaccaagcccagctaatttttgtatttttggtagagatggggtttctccatattggtcatg<br>ctggtctcgaactcccgacctcaggtgatccacccacctcagcctcccaaagtgctgggattacaggcatgagccaccgcacctgacagatttttaaaat<br>tctttattaaggtcctatatacaaagcagttataaaagattggcattaactttagtaatgtcttagtctcaaaagcaaacttcagcacacaaaaaataat<br>atttaagtctccaagtctatggggagtgcttgcaaaatacttgtgaactttattgaatttcaaagactaccaaaggctttaac<font color="green"><u>AAAAAATTTTGCACTTA<br></u></font><font color="red">GCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAG<br>TGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCC<br>CGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTC<br>TGCCCGGCCGCCATCACATCTAGGAAGTGAGGAGCCTCTCTGCTCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGG<br>ATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGG<br>CAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCATCTGGGAAG<br>TGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGG<br>GGTCAGCCCCCCCGCCCGGGCAGCCGTGCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCC<br>TCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAG<br>CCGCCCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGGCAGCCGTGCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGG<br>GGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGTCAGCGCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCC<br>AGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAG<br>CCGCCCCGTCTGGGAGTTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGT<br>GGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGG<br>GGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCGCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGG<br>GTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGTTGAGGGGCGCCT<br>CTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTGTCCAGGAGGGAGGTGGGGGTGTCAGCCCCACGCCCGGCCAGCCGC<br>CTCGTCCGTGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGTGGC<br>CCCGTCCGGTAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGG<br>GGGGTCAGCCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCACCTCCCCGTCTGGGAGGTGTGCCCAACAGCTCAT<br>TGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAAGATTGAGAAATCGGATGGTTGCAGTGTCTGTGTAGA<br>AAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGC<br>TCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAA<br>GAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTT<br>GTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATAAATA<br>AATAAAAAAAAAAAA</font><font color="green"><u>AAAAAATTTTGCACTTA</u></font>aagtttgagtagaaacgcatacgtgggagccaatgactggatgtgccaactgacattttcgaccttag<br>cctatatgtaaatttacagatctctaagtctcaaccttgggtgcttgagcccctggcaggctaacctctttcctcccaactctgagtccaatttaaagaa<br>gcaaaaggccgggcgcaatggctcacgcctgtaatcctagcactttgggaggccgaggcaggcagatcacctgaggtcaggagttcgaaactagcctggc<br>caacgtggtaaaaccccgtctctattaaaaatacaaaaaattagctgggcatggtggtgcacgcctgtaatcccagctagttgggaggctgaggcaggag<br>aactgcttgaaccag	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3152	150	NA	intergenic
0	chr2	113867813	113870081	3000049	0	+	H2_F_129; RIP_SVA_chr2_113_01	TTGCTGACTGCTATCAGGGTTA	TCATGTTTGTGGATGGGATaAA	OTHER	SVA	SVA_F	cgttttagtggaatccagatctctaagaaacagatataaaatatttgttcctatccaactttgattactatatttccaactatgttgctgtctgtaagta<br>gagtctgcatacatgtttctggttcatatatgcctagggttccagagcattacatttccatcaaaatgtagatcccaagaatgccagagagggtcaggca<br>gaggatagaacagagtgattttcagatactgcagtaggaaggtggatccacctcttggctggtacttgtaaccatgaagtgtgggaaagtaacgaccaga<br>ttgagtaaatgaccagaaattcaaaactaagccataacaaatttgtctatttctgcttttgctgactgctatcagggttacatc<font color="green"><u>AAAAACAGTATTGCTG<br></u></font><font color="red">GCCACCGCGCCGGCGAGCGCCGCCAGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCAGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCC<br>CAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGATCCCC<br>TCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCT<br>AGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCC<br>GGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGT<br>GAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCAGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCC<br>CCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>GCCTGGCCAGCCGTGCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGC<br>CCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGG<br>GAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGA<br>GGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCC<br>CCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGC<br>GGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAA<br>ATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGG<br>CGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAACATGCTGGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACT<br>GCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAA<br>ATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAACAAAAAA</font><font color="green"><u>AAAAACAGTATTGCTG</u></font>agaccagtgttgtgg<br>agctttaacccttatgttttcttctagtaattttacagttcaggccttctatttaaatcttcatttggagttggtattagtatgtggtgtaagttagggg<br>actaactttatttttcctgtggatattcagttttctcaacaccatttgtagaacagactatcctttaaccattgtatgtccttggcacctttgtcaaaaa<br>taagttgactgtgtgtgggtttatttctgggttttccattttgtttagccaatttgtccatttatatgccactaccatgctatttggattacaattgttt<br>tacaatatgtaataaaattaggtagcatgctgtctctagctttgttctttttgctcaagattattttat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2865	687	NA	intergenic
0	chr2	208182741	208185029	3000050	0	+	H2_E_239; RIP_SVA_chr2_208_01	ATACAGAAGGTACTGGGGAAGC	CATGCTTTTTGCCTTAATTTCA	OTHER	SVA	SVA_E	gtgtatcatagataatcctaaaacaatataacaatcatttaacccaaagtcaatgccctttaaatggaatgtatctttttcattatttggttatgaaata<br>tacagaaggtactggggaagcaacaatggaagaggcagaagcattcttggccctcaaggagcttacactctacagggcaatactaccactgaatgagcaa<br>ttacaagtccaatacaaaaggagcttatatgtaggaagctaacctctcaggcagggatgagatttaaaacttttaatgtcatcctatgcgttgttaagga<br>agcagggaaagcttgggaaagaactgcattaagacatttgagcaagggtaaaacagaaggggaaaacctcagctcttgacttgaaat<font color="green"><u>AGAAAACCTATTC<br></u></font><font color="red">CCTCCCTCTCCCTCTCCCTCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGC<br>CATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGG<br>TTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGA<br>TTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCT<br>TGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCTGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGA<br>GGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCA<br>TCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGC<br>CTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTC<br>TGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCTCCCACCTGGCCAGCTGCCCCATCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGTCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGCCCGGCCA<br>GCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGGGGTCGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCC<br>GCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGG<br>GGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCGTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCC<br>AGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTG<br>GGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCACGATGACAATGGCGGTTTTGTGGAA<br>TAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTA<br>CTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATG<br>GATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGAC<br>ACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTC<br>CTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAATAAATTAATTAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AGAAAACCTAT<br>TC</u></font>aagatttcaggtgctttttttttttttttttttttttttttttgagatggagtctcgctcttgtcccccaggctggagtacaatggtgcaatctcagc<br>tcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcctgacaccacgcccggctaattttt<br>gtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccgcctcggcctcccaaagtggtggga<br>ttacaggcatgagccaccgcatccggccagatttcaggtgcttttaaaaagtaactgaaattttatttttacttaattcctttatttat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	3027	627	NA	exon:3UTR:FAM119A:NM_145280
0	chr2	223468436	223470915	3000051	0	-	H2_E_256; RIP_SVA_chr2_223_01	AATGTGAAGGTCTCCACTGACC	CTCTTTTGTCCTGGCCTGTTAC	OTHER	SVA	SVA_E	acccacatttttcaaaattctcattgattcttatagagttattttcctacaaaatccagaggagttaacatttctgtatgacgaaacacaactttaaaag<br>aatcaaaaggaaaacaagtgtccaggaaaaaatgctgacaaaatatacaaagagcgcctataaattaaaataaaagtcaagcaacacaaggaaaatgggc<br>acagagtatgaacagggaagccaaaaaagaggaaataaaagaggaagcctgagagttaaacactggttttgataatgtgaaggtctccactgaccttaaa<br>cttgaaaagagcttaagtgttaaggaccaaagctcaaatgaagagggttcaagaaagggcagaaagacagtaagtagaaagagctct<font color="green"><u>AAAGAACAAAGTA<br></u></font><font color="red">GCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTCCCTCTCCACGGTCTCCCTCTGATGCCGAGCCGAAGCTGGACTGTACTGCTGCGATCTCGGCTCA<br>CTGCAACCTCCATGCCTGAGTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGTCACCACGCCTGACTGGTTTTCGTTTTTTTTTGGTG<br>GAGACGGGGTTTTGCTGTGTTGGCCGGGCCGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATGGCAGACGGAG<br>TCTCGTTCACTCAGTGCTCAATGGTGCCAAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAA<br>GAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATATGAGGAGCCCCTCTG<br>CCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGTCCGCCATCCCATCTAGGAAGCGAGGAGCGCCACTTCCCCGCCGCCATCCCATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGAGGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCC<br>GCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCAGCAGCCACCCCGTCTGGGAAGTGAGG<br>AGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCT<br>GCCCGGCCGCCCCCACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCGGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCAGTCCGGGAGGGGGGAGGGGGGTCAGCCCCCTGCCTGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGATGTCGGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCCGCCCGGCCAGCCG<br>CCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCTCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGGGGGAGGGGGAGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCC<br>GTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAG<br>GAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGCGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGAGGGGTCAGCAC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCC<br>GCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGG<br>TTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATT<br>TTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCA<br>GGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCCTTAAGAGTCAGCACCACTCCCTAATCTTAAGT<br>ACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTAT<br>TGTCCTATGACCCTGCCAAATCCCCTTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGAACAAAGTA</u></font>atggtaa<br>caggccaggacaaaagaggttcttttgtttttaacataaatagtagagcttgtctgcagactgatagctatgaaccagcagaggaaagtattatgcagaa<br>gagagccacacctctggaggaggagagagggtgggagaaacagggacacagatgtgcaggaataggagcttgcagaagattttcttctgggtgcttctat<br>tttctcagagtaataagcaaaatcattggatgtgagggaggcagaaaggaaggtattagaaaattaaggagaaagtataaaatagtcatctaggagagtg<br>gcagaatgaatggtcatggaaaaggaatagcaaaggcaggctggagtatgaaataataagaccacagtgttagaacgata	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	60	2645	155	NA	intron:ACSL3:NM:004457:2/17
0	chr5	32243463	32245520	3000052	0	+	H5_F_9; RIP_SVA_chr5_032_01	TGTCTGCCCTACCGAGTAATTT	GCTCTATTCAGCTGCATTTCCT	OTHER	SVA	SVA_F	gtcaaggtttggtgtggggctgtagaccaggtttctggctcactgttcaaatgggggaggatccatttctgagctcattcgtgcggccattgggaggcct<br>gaggccctcaatggctgtcagccggagacatcactttcatgccacattgacttctccatagggcagctctacaaaatgacagcttccctttctcaaacca<br>agggctccacaaaagggaaagaggtatcacagtcttctgtgatctaatcacttgcgccatgtcctgtttgttggaagcaagtgactaggttcacccatac<br>acaaggagagaagattacacagccatgaaccctgggagccatgttagaggctgtctgccctaccgagtaatttttttcttcctgtt<font color="green"><u>AATTAGCATTTTTG<br></u></font><font color="red">GAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCGCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCC<br>ATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGC<br>CTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCT<br>GGGATGTGAGGAGCGCCTCTGCCCTGCCGAGACCCCGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCC<br>TGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGG<br>AAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGC<br>GCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCA<br>GCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGACCCGTCCGGGAGGGAGG<br>TGGGGGTGTCGGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCTCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GTGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCAGCCGCCCGGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCTGC<br>CCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCGCTCTGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGTGGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAG<br>CCCTTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGG<br>AAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATT<br>CCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGG<br>TGCAAGATGTGCTTGGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGTG<br>GAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATC<br>CCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAA</font><font color="green"><u>AATTAGCATTTTTG</u></font>ccatcctggtttgttttttctttgatgc<br>agggtcttgctctgttgcccagctggagtgcaggggcgtgatcacagcttactgcagccttgacctcccgggctcaagcaatcctcctgcctcagcctcc<br>tgagtagctggttctgtaggcatgcaccactttgcccagctattttttaaattttttgtagagatgagatctccctgtgttgcccagactggtctcaaac<br>tcccgggtcaggtgatcctcctcccttgacctctgaaagttctgggattacaggtgtgagccaccacgcctggtctccatcctgttgtaataaaatgtta<br>taataaaaagaaaccccatctctactaaaaatacatacgtggaggtatgtgttcaggt	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2696	620	NA	intergenic
0	chr5	176320205	176322779	3000053	0	+	H5_F_171; RIP_SVA_chr5_176_01	CATGAAAGCATGGCAGAAATAA	TAACTGGTTTTTGGCATCACTG	OTHER	SVA	SVA_F	atagttggtcaaaatcgtagcgctgagacttgcctgactctaaaatccacacgctaaaaactattatattgcttactcagatgatcctcttcctaatcat<br>ttcaatgtagaatcccaagaacgtcttcatttcaatacattattttaatttagaaatttatacctcaatggcagtaatctgaacataaagtgaggttctt<br>ccagaatatgaacacaggatagcaaaataagcaaataaaatttagactacccaaatgtaatcaaggtgaacatgaaagcatggcagaaataaaaatttaa<br>ggaagctatggcctaatcaagacatcttcttcctggagaaataatatgttaataaggaagggatggtttgcattgaatctt<font color="green"><u>AAAAAAAAAAAAAAATTCA<br></u></font><font color="red">GCCCTCTCTCCCTCTCCCCCTCCCCCTCCCCCTCCGTCTCCGTCTCCGTCTCCGTCTCCGTCTCCGTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAA<br>GCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCACGCGCCGCCA<br>CGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCGCCAACCTCGGCCTCCCGAGGT<br>GCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTCCACCTCCCAG<br>CCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTC<br>TGGGATGTGAGGAGCCCCTCTGCTCGGCTGCCCAGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTC<br>CCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCACCGCCCCATCTGGGATG<br>TGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAA<br>CCACCCCGTCTGAGAAGTGAGGAGCCCCCCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGCCACCCCATCTGGGAAGTGA<br>GGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGAGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGT<br>CAGCCCCCCGCCCGGCCAGCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCGGTCCGGGAGGTGAGGGGCGCCTCTG<br>CCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCC<br>CCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GATCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGTGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGG<br>TCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGC<br>TGCCCCGTCCGCGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGC<br>CGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGCGAGGGAGGTG<br>GGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCGCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGACCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGCCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAC<br>TGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGG<br>AATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTG<br>CACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAA<br>TGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGG<br>ACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCAT<br>GACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAAA</font><font color="green"><u>AAAAAAAAAAAAAAATTCA</u></font>aagaat<br>tattatcaaagggtatttttaatacttaaaagtgaaaatggggctgggcagagtggctcacatctgtaaccccagaactttgggaggccaaggggggcgg<br>atgccttgaggccagcagttcaagaccagactggccaacatcgtgaaaccccatctctacaaaaaatacaaaaattagccaggcatggtggtgcatgcct<br>gtgaccccagctactcaggaggctgaagcaggagaatcacttgaacccgggaggtggaggttgcagtgagctgagatcgtgtcactgcactccagcctgg<br>gtgacagagtgaaactccatctttaaaaaaaaaaaaaaaaaagtgaaaatgaatagataaatcatctggtcatca	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3553	950	NA	intron:UIMC1:NM:016290:6/15
0	chr5	43122169	43125053	3000054	0	-	H5_E_27; RIP_SVA_chr5_043_01	AATTGAGGTTAGATAGACCTGTTCA	GCATGAGGCAAACTCTCTTTTT	OTHER	SVA	SVA_E	gtaggtgcacacaaccataattgggtaattaaatatttttttttgtggagacgggatctcagtttattacccaagctggtcttgaactcctggactcaag<br>ggatcctcctgcctcggcctcccaaagtgctgggattacaggtgtgagctgccacacctagcttagtttagatgtttgttttaaagttttaaatttttaa<br>tagttaataacagataaaactaaatttaaaaaattataaaaggttataaaaggtttatacaaatcttatcttctgtggtcaaaactaattgaggttagat<br>agacctgttcataattttactaaaattagctttagcattaataatatacggatatagagatacaaattttttaacaaaatttccatat<font color="green"><u>AAGAGATAACAA<br></u></font><font color="red">GCTCTCTAACAAGCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCGTCTCCCTCTCCGTCTCCCTCTCCCCGGTCTCCTTCCACGGTCTCCCTCT<br>GATGCCGAGCCGAAGCTGGACTGTACTGCTGCGATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTGAGTGCCTGCGATTGCA<br>GGCGCGCGTCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTG<br>ATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCAAGGCTGGAGTGCAGTGGCGTGATCTC<br>GGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCTGCCTGGCCGCCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATC<br>TAGGAAGCGAGGAGCGCCACTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGAGGTGGGGAGCACCTCT<br>GCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGTCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGTCGCCCCGTC<br>CAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCG<br>GGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCAGTC<br>CGGGAGGGAGGTGGGGGGTCAGCCCCTCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGG<br>GAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCC<br>CCCGCCCAGCCAGCCGCCCCGTCCGGGAGGGGGGAGGGGGAGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCC<br>CGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCG<br>CCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TGGAGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCT<br>GGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCACTGGGGATGGGCCATGATGACAATGGCGGTTTTGT<br>GGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTC<br>TGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTA<br>AATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAG<br>GGACACAAACACTGCGGAAGGCAGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCT<br>ATGACCCTGCCAAATCCCCTTCTGCGAGAAACACCCAAGAATGATCAATTAAAAAAAAAAAAAAACAAAACAAATATTTACGTATGATAATGAGAAGAAC<br>ACTGTCCTAGATGGCTGAAATGCTAATAGTCTTTAATTCACTATTTTCTTATTCTGACTGTTGCAAAGATTTGTAGTTTTATTGATGATTCTCACTCATG<br>TTCTAAAATAGGAGTTGGCAAACTATTGGCTGCCTGTGTTTATAAATAAAGTTTTCCTAGAACACAACAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGAGATAACAA</u></font>atg<br>caagattttttgttcaccttttaaatacattgcaaaagaaaaaagagagtttgcctcatgctgtctttgtctttttgactgtttagagaactgagtctcc<br>tctctatcaaagagtaagggtttttgctttttgaaatctttgaattatcactttggctaaatgagtaacttatttgtgtaagataaggattacttatgtg<br>taattctattttgatccagggtttgaaacctttcttattttcctatcaagtgttttaagcctttaatagttgacaaacttctcaaaatcaaattttatat<br>tctaaaattaagtctttttgacctgaaactaacttttaattttggtatataaaaatcatatggaaaacactgtcaaatagaagtg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3075	180	NA	intergenic
0	chr6	4982248	4984167	3000055	0	-	H6_E_1; RIP_SVA_chr6_004_01	TCCGGTAAGCTTCATACCAGTT	ATTCAAATCCCTCTGCAAAGAA	OTHER	SVA	SVA_E	acttaaaacagtgcctggaatatagttggttctcaataaatattaattgagtaaatgccatgttacatattaccttgctttgaaattctaagacaaaaca<br>atactaatagcttttaagtaatggtggcttccggtaagcttcataccagtttctcttatagtgttacatatttatttttaaagcaacaactcatttattt<br>agattaatgaaaaaaaaatgaaaataaatactgtattgtgggcccacatttcagtgttccagtgatatcaggcaaccttaaattttagccataaataatt<br>ttgataaaagaaacatgtgtaaactacccataaaccaggtgtggccgttcatccagactttgcaggattaacccaaacatttt<font color="green"><u>AAAAATACAAGCTAAAG<br></u></font><font color="red">CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCCCTCCACGGTCTCCTTCCGCGGTCTCCCTCTGATGCCGAGCCAAGGCTG<br>GACGGTGCTGCTGCCATCTCGGCTCGCTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGGGTGCCTGCGCACACCGCCACGCCTGACTGGTTT<br>TCGGTTTTTTTTTGGTGGAGACGGGGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACTGCCAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGC<br>CGGGATTGCGGACGGAGTCTCGTTCACTCGGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCC<br>GCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGGGGAGCGTCTCTGCCTGGCCCCCCATCGTCTG<br>GGATACGGGGAGCCTCTCTGCCTGGCTGCCCAGTCTGGAAGGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCC<br>CGCCGCCATCCCATCTAGGAAGTGAGGAGCATCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCCCATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCTCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCC<br>GCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGG<br>AGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGCGGTCAGCCCCCCG<br>CCCGGCCAGCGGCCCCGTCCGGGAGGTGAGGGGCGCCTTTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGG<br>GAGGGGGGAGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCGGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCC<br>CCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGGACCCCGTCT<br>GGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCG<br>GATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTG<br>TGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATG<br>CTTGAAGGCAGCATGCTCGTTAAGAGTCATCGCCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGA<br>AAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATG<br>ATCAATAAAAAAAAAAAAAA</font><font color="green"><u>AAAAATACAAGCTAAAG</u></font>agacaagacttctcaatactggggcagtgatgtgcttcagagacctagataacaggggacttt<br>gaagggcaccctcctaggaaggacctcctaacttctcaggcatcagtttctgcttctgttgactcagaaaggagctcccagtggtataacttgagcgtat<br>cccgtgcccgcaggtctcctgagaaagtggactgtgtcttctcactgtccgggcccaaggagaagatgttgggctgaagggaagctcatttagagggagg<br>cctttatctcaggagagaaattgatgcaagatctcagtccagcaggaaggagagtgactatctgaagcaatcggatgctttctttgcagagggatttgaa<br>tttgaaactgtagagaccat	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2572	640	NA	intergenic
0	chr6	125750465	125753051	3000056	0	-	H6_E_146; RIP_SVA_chr6_125_01	TTAACAGCACGTAGCACAGTGA	TTTCTCCCTTCCCATTTTTGTA	OTHER	SVA	SVA_E	taataataatgccttctcatcagaaataatggaaatagaataatgaattaccatttttttcttaaatgaaaaaaaaaaaagactgtgaacctaacattct<br>gtaaccagttaaaatatccaccaaaaatgaagttgaaataaagagattatcagactaaccagatctgagagaatacattgccaggagacttcaactacaa<br>gaagtgtataaagaaggtcttcaggtgaaggataatgatatatgaaaacttgattttacacaaaggaataaagggtgccagatacggttagtatacaggc<br>aaatctaaaattctttttcatactgtaatttcttcaaaaattaattgattctttaaagcagaaataacaaaatatcatggagtt<font color="green"><u>TAAAATATACATAGCA<br></u></font><font color="red">GCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCCCTCTCCCGTCTCCCTCTCC<br>CTCTCATGCCGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCGCTGCGGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGAT<br>TGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGATGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGA<br>GTGATCCGCCAGCCTCGGCCTCCCGAGGTGCTGGGATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGAT<br>CTCGGCTCGCTACAACCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCGGCCACCCCGTCTGGGAAGTGAGGA<br>GCGTCTCTGCTTGGCCACCCATCGTCTGGGATATGAGGAGCCCCTCTGCCTGGCTGCCCAGTGTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCC<br>ATCTAGGAAGCGAGAAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACC<br>TCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAG<br>AAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCTGGCAACCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCC<br>CGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCCGGGGGGGGGGGGTCGGCCAGCCGCCCCGGCCGGGAGGTGAGGG<br>GCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAACCCCCCGCCCGG<br>CCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGGGG<br>AGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGG<br>GCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGG<br>CCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAC<br>TGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGAACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAG<br>GGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGCGGTGGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCATCTGGGAGGTGAGGGGCACTTCTGCCGGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCGGTCTGGGAGG<br>TGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGT<br>TGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCT<br>TATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAA<br>GGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCA<br>GAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAAT<br>AAAAATAAAAAATAAAAAATAAATAAATAAATAAATAAATAAATAAAGAAAAAAAAAATAAATAAATAAAAAAAAAGAAAAAAAAAA</font><font color="green"><u>TAAAATATACATA<br>GCA</u></font>aacaataatacaaaaatgggaagggagaaaatggaagtatactattgtaagattcttaccatatacataaattagtatgatactgggggtagactct<br>gatagattaaaaattcatgttgtaaattgtaaagcaactgctaataaaatgaaaacaaatctaacagaagacaagaaataactaagatcagagcagaact<br>gaaggagacagagacacgaaaaaccctcccaaaaatcaatgaatccaggagctggttttttgaaaagctcaacaaaatagatagaccataaaaatcctag<br>aagaaaacctgggcaataccattcaggacatgggcatgggcaaagacttcatgtctaaaacaccaaaagcatggcaacaaaagccag	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3196	580	NA	intergenic
0	chr7	25023987	25026378	3000057	0	+	H7_F_35; RIP_SVA_chr7_024_01	TTTAGGCCCAAATATGCAAAA	ATCAATgTCTTCATCTGCTTGG	OTHER	SVA	SVA_F	tacatgaatcaaagagctaaatgtaaagaagaaaaatgaaatgaaataaaaaacaaaataaaaataaaaagccacaacaattagaagaaaatatattgtt<br>tccaacagctagataagaaaagactttttaaacctaaagtaaatgcaaaaaaagtcacaaaaaatatgattggacaatcttaatagctattataaatagt<br>tataaggcaaacaagttacaaaaaatatttaggcccaaatatgcaaaatttttcataatatagaaacatttaatagtaatcaataacaaaaacttatttt<br>ataggaaacaagtactttcatatcctgttggcagaactgtaaatttattcagccttcttggaaagctaattaggaatatgcat<font color="green"><u>AAGAAATATATAAAGTC<br></u></font><font color="red">GGCGACCGACCGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGC<br>CCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTT<br>TGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCGATCACATCTAGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCG<br>ACCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCG<br>GGAGGGAGGTGGGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCAGCCGTGCCGTCCG<br>GGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTAGGGGGGTCAGCC<br>CCCCACCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGAGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAG<br>CCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCAGGAGGGAGGTGGGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCG<br>TCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGT<br>CGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGTGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGGGT<br>CGGCCCCCCTGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTGGTCAGCCCCCCCGCCCAGCCAGC<br>CGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG<br>GGGGGGTCGGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGG<br>CGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCGCCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACAGGCCA<br>GGATGACAATGGCGGCTTTGCGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAATAGACAT<br>GGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATG<br>TGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTATTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAA<br>TCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGA<br>CCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAA</font><font color="green"><u>AAGAAATA<br>TATAAAGTC</u></font>tatgttctttgacccactaattccatctacatgactctatcttaaggtgataatgataaaataaggaaagaagttatgacagtatacaaaa<br>ctgtgtataaaactatgtacatacaatataatcgaaactattctaaatacacttagaaaaaaaaaagactggaaggaaatataccacgaaagattgttca<br>tccaacaagcttttatcgttcagatgggctcaacatttgggtctcccgcaaattcctgtggtgaatctctaacccccaacgtgatggtattagtgggtga<br>ggcctttgcaaagtaatcaagtttagatgtggtcctgagggtgaagccctcatgatagaattagtacccctgtaagagatgaaagctctctc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3164	760	NA	intergenic
0	chr7	137946997	137947748	3000058	0	+	H7_F_148; RIP_SVA_chr7_137_01	CATGCTTCAAGAGAACATCAGG	TCTGGTTGCTTGCAGAGAGTAA	OTHER	SVA	SVA_F	aggttgtagtgggctgagatcgcaccattgcactccagcctaggcgacagagcaagactctgtctcaaaaacccccaaccccaaaacaaaacaaaacaaa<br>acaaaacaaaacaaaaaccaaaccaatccttacccctttaactagtgcccagctctgttgatctttgacaacgtacagtttctcaataagttcatggctt<br>attggaaatcacttctgaaaaaattaaatggatgtaatttgattcccattaacttgtgaagttctctgtcatcttacgagctgattttttttccccatgc<br>ttcaagagaacatcaggcatttatataggacaaaaagatcatctttcggctgtaaccattaaattagggtttttttgtgaccctt<font color="green"><u>GAAAGATAAGACTTT<br></u></font><font color="red">GGTTAAAAGATTGAAAATTAAAGCTAGATAGGAGGAATAAGTTCTAATGCTCTATACCATTATGGTATGACAATAGTTAATAATATATAGCTTCGACAAC<br>CTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTG<br>AGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGCGGGGAAAGGATTGGGAAATCGGATGGTTGCCGGGTCTGTGTAGAAA<br>GAGGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTC<br>TCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGATTGAAGGCAGCATGCTCGTTAAGA<br>GTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGT<br>TTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAA<br>AAAAAAAAAAAATAAAATAAAAAATAAAAAAAAAATAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGATAAGACTTT</u></font>atctttcatccttatccaagccagacttaattt<br>tttttttttttttttggtgagagagagaaagtctcgctctatcgcccaggctggagtatagtggtgtgatcttagctcactgcacctccgcctcccaggt<br>tctaagggattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccatgcccagctaatattgtatttttagtagaaactggttttc<br>accatgttggccaggctggtctcgaactcctgacctcagatgatcaatcagcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcctg<br>gccagaaatgtaaattttttacgcagtcaggtttaccatgttttcctatatc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	1401	630	NA	intron:SVOPL:NM:174959:10/12
0	chr7	20673814	20675891	3000059	0	+	H7_E_27; RIP_SVA_chr7_020_01	GTGCACAGAAGGATACATGGAA	GCCTATGCTGATACCACTCCTC	OTHER	SVA	SVA_E	atgacacagatgaaatgcttgataagtaaataaatatgagaagagatatatattaaaacacctgtgaagtgaatcccctgtgaagaaaagaaggtctcta<br>acaatataaacctgtatcaggaaaccctgtgattctgattctgtgcacagaaggatacatggaattctcagaccttttctagttgcaaccttttaattgt<br>ttgactttatattctgtcctctcaaattctccttagactgtgacgtgttaatgctctcttttatattttctaattaaattccatacacattaatttgaga<br>actgttggagagtattgtgaaatcattgagctaatgggtcacatcacgtggcttcatgaataagatttgagatctgtttgcttttg<font color="green"><u>GAAAATAACATTCG<br></u></font><font color="red">CCTCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCTCTGCCTCTGCCTCTGCCTCGTCTCCCTCTGA<br>TGCCGAGCCAAACCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGG<br>CGCACGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGGGGTTTTGCTCTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGAT<br>CCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGC<br>TCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTTTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCTGCCTGGCCCCCCATCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCACAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATC<br>TAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCT<br>GCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAG<br>CGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAATGAGGAGCGTCTCCGCCCGG<br>CAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGACTCCTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGTCGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGG<br>TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCC<br>GCCCAGCCGGCCGCCCCGTCCGGGAGGTGTGGGGCGCCTCTGCCCGGCCGCCCCTACTAGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGG<br>GAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGATGGTGGGGGGGGTCAGCCCCCCACCCGGCCAGCTGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGG<br>CGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTT<br>CATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCA<br>CTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTC<br>AAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCAC<br>TATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAATAACATTCG</u></font>taactttg<br>aggaaacagaataaatagagatttattaaataaatatgagccagtaggctaggtgcctgagtgtttttgccttcgcggttgtcaggtttctaatacatac<br>caacccaacaacagtttctgggactctcttttaaagggctgtaggcaagtcccaggtctccaagacccagaatagaattcaaacttgaagtgtgaaagag<br>aggagtggtatcagcataggctgaatatcttacctgtaaaaaggaagacaaatcagacgaactcaaattgagatattctacaaaacatctaaccagtgtt<br>ctttaaaactatcaagtttatcaaaaacaaggacaatctgagagactgtaacagccaagaggagcctaaggcgacatg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2579	480	NA	intron:ABCB5:NM:178559:5/19
0	chr7	65495095	65497539	3000060	0	-	H7_E_82; RIP_SVA_chr7_065_01	TTCTGGAAATACCATCTTTGGA	ACAGAGGATTGGCGTAATGACT	OTHER	SVA	SVA_E	tactgggctcaagcagtcctcccacctcagcctctgaaagtgctggaattataagcagacagccaccatgcctgaaaacttgacaatttacatcaagtgt<br>aataagaatgctcatgccctgtgactcacagtaatctcacttctggaaataccatctttggatataattcaacctaaacaaaaggtcatatgtacacagt<br>gaaaatccggatgtaatttttttctttttaaaaacatatggaatgattcacaaatttgcatgtcattcttgcacagaggccatgccaatctatcgttcca<br>actttagtatatgtgctactgaagcaaacatgagtaatttaagataaagtggttaagtggaataaggaagagttatggggaatt<font color="green"><u>TAAAAATTTATGGTAT<br></u></font><font color="red">ACTCCCTCTCCCTCTCCCTCTCCCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCT<br>GCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTC<br>GTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGG<br>GATTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCACCTCCCAGCCGCCTGC<br>CTTGGCCTCCCAAAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCTGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATAT<br>GAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGCCTCTTCCCCGCCTCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCGCGGCTGC<br>CCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCACCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGC<br>GTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCG<br>TCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGT<br>GAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGTGGGGGGTCGGCC<br>AGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGACCCCTCT<br>GCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCTGCC<br>CGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCG<br>GCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTA<br>CTGGAAAGTGAGGAGCTCCTCTGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGCGGGCGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGAGGGG<br>GTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCC<br>GCCCCGTCCGGGAGGGAGGTAGGGGGGACAGCCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAA<br>GTGAGGAGCCGCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCT<br>TCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGAT<br>GACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGA<br>GACTTTTCATTTTGCTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCT<br>GCGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTGGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCC<br>TAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTT<br>CCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAATAAAATAAAATAAAATAAAATA<br>AAAAGAAATCCAATTGCTGGAAAAAAAAAAAATAAAAAAAAAAAA</font><font color="green"><u>TAAAAATTTATGGTAT</u></font>ttataggcacctagtaacggctcagtaaatattagctgc<br>tacttttattatttttatggtaattccactcaattaaaaactgtcattaaaaattaccattgtcatggaacataatgtatcctacagtataattgtaaaa<br>acagatacaatttgtcccttggtatatgggggggattagttccagctcccccatttctgtgtataccaaaatccacccatacccactgcagcctagactt<br>ttcaggctcaagggatcttcccaccccagactccaaagtagccggaactataggtgggcaccaccaccacatctggctaatttaaaaaaattttttggta<br>gacaacagggtctcactatgttgcccaggctggtctccaactcct	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3250	800	NA	intron:NCRNA00174:NR:026873:3/5
0	chr7	151912637	151915238	3000061	0	-	H7_E_171; RIP_SVA_chr7_151_01	GAATAGAAGGGTGCTTCCTCAA	TTGATTTCtTGCAGCAATGTTC	OTHER	SVA	SVA_E	tcaacctgaaaagggcatctatgaaaaacatacaactgtcatcatacttcacagtaagagagtgaatgctttcccactgaggtcaggaacaaggcaagga<br>tgcccactctcaccacttctattcaacagtgccctggatgctccaatggagcaataaggcctaaaaaataaatcaataaataaaagtaaggaagtcataa<br>aacaagggaaaaagtaaaactatctctactcacagataacataatcagctgtgtggaaaatctgatgaatctacaaaaaggctaattagcaagagtggag<br>gattcaatatcagtatacaaaaacaactatttctacattcaaacaatgaacaattggaatttgaaattttaaaaataacataatagaat<font color="green"><u>TAAAACATGTG<br></u></font><font color="red">GGGTCTCCCTCTGATGCCGAGCCGAGGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAGCCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTG<br>CCTGCGATTGCGGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCT<br>AGCCGCGAGTGATCCGCCGGCCTCGGCCTCCCGAGGTGCCGGGATTGCGGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGT<br>GGCGTGATCTTGGCTCGCTGCAACCACCTCCCAGCCACCTGCCTTGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGA<br>AGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCC<br>GCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTTTGAGATGTGG<br>GGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTC<br>CGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAGTGAGGAGCG<br>TCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGGCGCCCCATCCGGGAGGGAGGCGGCGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTG<br>CCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCC<br>GGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCT<br>ACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCTGGGAGGG<br>AGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGA<br>GGTGGGGGGATCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGC<br>CCGGCCAGCCACCCCGTCCGGGAGGGAGGCGGGGGGGGGGGGGGTTCGGCCCAGCCGCCCCTTCCGGGAGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGC<br>CGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAG<br>GTGGGGGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGGAGGTGAGGGGCGCCTCTGCCCGGCCGTCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>TGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCTCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCC<br>TACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTG<br>TGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTCTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTT<br>CTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGAACACTCAGGGTT<br>AAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCA<br>GGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTA<br>TTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAATAAATTAAAAAAAAAAATAAATAAATAAAA<br>AA</font><font color="green"><u>TAAAACATGTG</u></font>aaacacttaggcataaatctgacaaaggatgaacaaaggatatacactgaaaactaatagaacattgctgcaagaaatcaaaggcct<br>aaataaatggagaaatatatatattttttattcagttttttatttttattttttcctttatttttgtagagacagtgttgcctaggctggtctcgaactc<br>ctggcctccagtgatcctcctgcctcagcctcccaaagtgctgggattacaggtatgagccaccatgcccagacaagaaatatatttattcatcaattag<br>aagactcaatggccaggcacagtggctcatgcctgtaatcctagcactttgggagggtgacgtgggtggatcacccaaggtcaggagttcaagaccagcc<br>tg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	3112	500	NA	intergenic
0	chr8	43152895	43155536	3000062	0	-	H8_E_35; RIP_SVA_chr8_043_01	TTGTGTCCTCTTCTGCTAACGA	CAAGAGCGATTGAAGGTTTTCT	OTHER	SVA	SVA_E	acaaaccctaaaatgaatcctactggaagcagtggctccctttttggagatccaccaagtccacattcatatgaaacaccatctagaagtgacctccacc<br>tcttgctagtgcctattaaagtacatattgcctgagggctccatttggccattgtctagatgtttgtgtcctcttctgctaacgacagttgcaaggccct<br>tgaggacagtgactagtgccctcccgactctgatactcattcaaagcagagggctcacaagccttccctcagctctgctgtccctgcgcaccactaaact<br>aatgacaaagatattactccttccagaaacccagctgccatacaagtgccagtgaaggtggattcgtgaactgccgcacactatc<font color="green"><u>GAAAGCTGATGAAAT<br></u></font><font color="red">GCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTC<br>TCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAGGCTGGACGGTACTGCTGC<br>CATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGG<br>TTTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAGCCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGA<br>TTGCAGATGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTGCAACCACCTCCCAGCCGCCTGCCT<br>TGGCCTCCCGGAGAGCCGAGATTGCAGCCTCTGCCCAGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCTTGGCCACCCATCGTCTGGGATGTGA<br>GGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTGGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCA<br>TCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGTGC<br>CTCTGCTGGGCCGCAGCCCTGTCTGGGAGGTGGGGAGCGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTC<br>TGAGAAGTGAGGAGCCCCTCCGTCCGGCAACCACCCCGTCTGGGAAATGAGGAGCGTCTCCGCCCAGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGG<br>TCAGCCCCCCGCCCGGCCAGCCACCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCC<br>GCCCCATCCGGGAGGGAGGCGGTGGGGGGGGGGGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGT<br>CTGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGACGCCCCGTCCAGGAGGGAGGTGGGGGGGTC<br>AGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGATCAGC<br>CCCCCGCCTGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCC<br>GCCCGGGAGGGAGGTGGGGGGGTCATCCCCCCACCTGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGTCGCCCCGT<br>CCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGAAAGTGAGGAGCCCCTCTGTCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGTGGGGGG<br>GGTCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCTTCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCG<br>CCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGACAGCCCCCCGCCCAGCCAGCCGCCCTATCCAGG<br>AGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGTGGTGGGGGGGTCAGCCC<br>CCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCT<br>GGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGGGTGGGGAAAAAATTGAGAAATCG<br>GATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTG<br>TGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGTGGTGCAAGATGTGCTTTGTTAAACAGATG<br>CTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCAAGGCCGCAGGGTCCTCTGC<br>CTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCAACACCCAAGAATGATCAA<br>TAAAAAATAAATAAATAAATTTAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GAAAGCTGATGAAAT</u></font>cacattagcagggggcaaagttggagaccaaggcggcctggtc<br>tggtccctgctgtgcctctcactacactcagataatccagagaaaaccttcaatcgctcttggcctcagacttttcctctgcacaagagaagggtttgag<br>tagtctcagaggctcctcccaggtctaaaattcaaaaataataataataatgctcacagttagacaaccattgtatatactttcctaatgattattctat<br>ttgcaggcacctgagatggaggaattgcatttctctcaaattacaacatatagtttccatatttcaacctgaatatatataacagagggaaaaagtactt<br>acatggaccaaggcaataattgggattcacaatgataattcc	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2999	350	NA	intron:HGSNAT:NM:152419:10/18
0	chr8	52608591	52610856	3000063	0	+	H8_E_45; RIP_SVA_chr8_052_01	CCACAACTCTGGCTTAATGTGA	CAGTAAAAGAGAGCGAATGCAG	OTHER	SVA	SVA_E	caacttctgaatcagaatcttcttttaaaaaatatcaccaagtattcatatgctgtttatttatttatatttatttacttttttattttttgaggcagag<br>tcttgccctgtcacccaggctggagcacagtggcgcaatctcagctcactgcaacctctgcctcctgggttcaagtgattctcctgccttagcctccaga<br>gtagctaggatcacaggcatgcaccaccacgcctggctaatttttgtatttttagtagacacagggtttcaccatgttggccaggctggtcttgaactcc<br>tgacctcaggtgatccacctgcttcggcctcccaaaatgttgggattacagtcatgagccactgtgcccagcctcatacactgtt<font color="green"><u>TAAAGTTTGAGAAGA<br></u></font><font color="red">CCTCTCCCTCCCCCTCCCCCTCCCCCTCCCTCTCCCTCTCCCTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCT<br>CACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGGACGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTGGTGGAGACGG<br>GGTTTTGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTT<br>CACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCTAAAGTGC<br>CAAGATTGCAGCCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATACGAGGAGCCTCTCTGCCTG<br>GCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCCTCTTCCCCGCCGCCATCCCATCTAGGAAGTG<br>AGGCGTGTCTCTGCCCGGCCGCCCATGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGGCCACAAC<br>CCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTAAGGAAACCCTCCGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCC<br>CTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTACGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCGCCAGGC<br>CAGCCGCCCAGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGA<br>GGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCAGTCCGGGAGGAGGTGGGGGGATCAGCCCCCACCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGG<br>GGGGGTCAGCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGATCAGCCCCCACTGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCT<br>GCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGCCCC<br>GTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTAGGAAGTGAGGACCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAG<br>CCCCCCGCCCGGCCAGCCGCCCTATCCAGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCTGGCCAGCCGCCC<br>CGTCCGGGAGGGTGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCTCTCTGCCCGGCCAGGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGG<br>CGGGAAGGGTGGGGAAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAA<br>AATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACAC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCA<br>AATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAAAAATAAATAAATAAATAAATAAAAA</font><font color="green"><u>TAAAGTTTGAGAAGA</u></font>actggtatggacttctctt<br>ttcttctttctttttctcctttctcccatctttcctctcttattttccttaaaaagaaaagaatattccttagtccttatagaatctcacaagacaggta<br>tagtggagatttgctcttgcccccctccctgcattcgctctcttttactgtgactacagttcttaccacgtttccagcttctgtgatctgtgtaaagctg<br>accccagccctggacttgggggatggaacaagtgattaagttcagtgcaaccagagcatgtggacccctggccatggtgatcgggccagcaacaggcacc<br>tgaccatcccagtcagtccactcagggctacaccctctcgggacctgaaattttcctggatatttg	UCSC	<UL><LI>Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. J Mol Biol. 2005 Dec 9;354(4):994-1007. Epub 2005 Oct 19.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16288912">PMID:16288912</a>.</LI></UL>	E:Insertion-specific detection:PCR; 	NA	55	2998	710	NA	intron:PXDNL:NM:144651:4/23
0	chr11	9061127	9061128	3000064	0	+	1104685630812	CTCAAGTACCCAGGGACACAA	CCATGCATTTCCCTTATTCCT	OTHER	SVA	SVA_D	aaatggtatattcatacaatggactactattaaacgataaaaatgaatgaaatgctgatataagctaccacatggacaaacctcaaaagcattttgctaa<br>gtgaaagaatccaacacaaaagaccgcatattgtatgattccacttacgtgaaatgtccagaaaaggcaaatatacagatacagaaagtagattactggt<br>tgcttgaggctgggactgggaatgaggattagctgtacaagaacacggggaatcttactgagatgaggaaaatgtttgtattgtgatggttgcacaattc<br>agctgatttactaaaaatcactgacttgcacaattaaaattggtgaatattatagtatgttaattacacctcagtaaagttgtt<font color="green"><u>AAAGTTGCAACTTTTT<br></u></font><font color="red">GCTCCCCCTCCCTCTCCCCTCTCCCATCTCCACTCTTCCTCTCCCCTCTTCCCTCTCCCTCTCCCTCTCTTTCCACGGTCTCCCTCTGATGCCGAGCCGA<br>AGCTGGACTGTACTGCTGCCATCTCGGCTCACTCCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCC<br>ACGCCTGACTGGTTTTCATATTTTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCAGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTTG<br>GCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTGGTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTGGGCTCGCTACAACCT<br>CCACTTCCCAGCCGCTTGCCTTGGCCTCCCAAAGTACCGAGATTGCAGCCTCTGCCCGGCCACCACCCCATCTGGGAAGTGAGGAGCGTCTCTGCCTGGC<br>CGCCCATCGTCTGGGACGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCAGCGCCATCCCATCTAGGAAGTGAGGA<br>GCGCCTCTTCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCTCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCTGCCGCCCC<br>GGCTGGGATGTGAGGAGCGCCTCTACCCGGCTGCGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAGGAGACCCTCCGCCT<br>GGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCCGGCAGCCGCCCCGTCCGGGA<br>GGTGAGGGGCGTCTCTGCCCCGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGC<br>CCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTCCCGGCCAGCCGCCCCG<br>CCTGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCAACCCGTCCGGGAGGGAGGTGGCGGGGTCAGCCCCCCGCCCAGCCAGCCGACCCGTC<br>CGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCCGCCTCGTCCGGGAAGGAGGTGGGGCGGTCA<br>GCCCCCCGCCCGGCCAGCCGCCCCATCTGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCCGGCCAGCAGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGC<br>CCCCCGCCCGGCTAGCCAACCCTTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCTGCCTC<br>ATCCGGGAAGGAGGTGGGGGGGTCAGCCCCCCACCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGT<br>CCGGGAGGGAGGTGGGGGGATCAGCCCCCCGCCTGGCCAGCCGACCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGA<br>GCCCGTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAGCAGCTCATTGAGAACGGGCCATGATGACAATGGTGGTTTTGTGGAGTAGAAAGGGGG<br>GAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAGAGAGGTAGACATGGGAGACTTTTCATTTTGCTCTGTACTAAGAAAAAT<br>TCTTATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATG<br>TGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCAGGGACACAAACACTGCGGAAGGCCGC<br>AGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGC<br>GAGAAACACCCAAGAATGAACAATAAAAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAAGTTGCAACTTTTT</u></font>ctgaaatctaaaattatacatttatctgcttatta<br>gtgcaaaataaatatagaaaggtaaaaccagaaactacagagattggtgacccacagggcacggggaaagggtggaaagaatgaatacaattaattgtat<br>acatacaattaatacatgtttaaggaataagggaaatgcatggaaggaggggatggaagtgaataaaagtggaatacgaaaagaaacaaatgaacctaat<br>gtattataaactaatagtataaccatactgaagaggatggggaaggaaaatattgacctaaataacactatgaaaaacaacaccttgcttggatgcttta<br>aggctaaaaacaaaatagctgtatgctatactctagtaaatattgtact	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:SCUBE2:NM:020974:2/22
0	chr11	65918691	65918692	3000065	0	-	1104685201673	NA	NA	OTHER	SVA	SVA_E	acagcctcccaaatagctgagaccacaggcgtgcaccaccacacccagctaattgttttacttttcgtagagaggggtctcactatgttgcttagggtgg<br>tttcaaactcctggcctcaagcaagcctcctgcctctacctcccaaactgctggaatcacaggcatgaaccaccatgcccagcctcctcttgactgtttg<br>taatccttcgtctaccccctgcccagccctatctctaagcaaccactcacctgccttttgtcactatagattattttgcattttctagtattttatatga<br>attggattatacaatgcatactattttttttgaggggggaatctgcttctttcagcattagtatttcgtgatccacccatgctgtgtatgtatca<font color="green"><u>NNNNN<br></u></font><font color="red">TCATTACTTTTTTTTTTTTATTTTTTTTTTATTTTTTATTTTTTATTTTTTATTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAG<br>GGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCGGCCTTCCGCAGTGTTT<br>GTGTCCCTGGGTACTTAAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAA<br>TCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGATAAGGTCACAGATCAACAGGATCCCAAGGCAGAAGAATTTTTCTT<br>AGTACAGAACAAAATGAAAAGTCTCCCATGTCTACTTCTATCCACACAGACCCCGCAACCATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTC<br>TATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACCTCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTT<br>CCCAGTAGGGGCGGCCCGGCAGAAGTGCCCCTCACCTCCCAGATGGGGCGGCTGGCCGGGAGGGGGGCTGACCCCCCCACCGCCCTCCCGGACGGGGCGG<br>CTGGCCAGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGTTC<br>CCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGG<br>GCGGCTGGCCAGGCAGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCCACCTCCCTCCCGGACGGGG<br>CGGCTGGCCGGGCAGAGGGGTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCAGGCAGGGGGCTGA<br>TCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGGGGGCTGACC<br>CCCCCTCCCCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGCGGCTGGCCAGGCGGGGGGCCCACCCC<br>CCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGAGCCCCTCACCTCCCGGACGGGG<br>CGGCTGGCCGGGCGGGGGGCTGACCCCCCCCACCTCCCTCCCGGACGGGGTGGCTGCCGGGCGGAGACGCTCCTCACTTCCCAGACGGGGTGGTTGCCAG<br>ACGGAGGGGCTCCTCACTTCTCAGACGGGGCGGTTGCCAGGCAGGGGGTTTCCTCACTTCTCAGACGGAGCGGCCGGGCAGAGACACTCCTCACCTCCCA<br>GACAGGGTTGCGGCCCAGCAGAGGCGCTCCTCACATCCCAGACAGGGCGGTGGGGCAGAGGTGCTCCCCACATCTCAGACGATGGGCGGCCGGGCAGAGA<br>CGCTCCTCACTTCCTAGATGGGATGGCGGCGGGGAAGAGGCGCTTCTCGCTTCCTAGATGGGATGGCGGCCGGGCAGAGACGCTCCTCACTTTCCACACT<br>GGGCAGCCAGGCAGAGGGGCTCCTCATATCCCAGACGATGGGTGGCCAAGCAGAGACGCTCCTCACTTCCCAGACGGGGTGGCGGCCGGGCAGAGGCTGC<br>AATCTCGGCTCTTTGGGAGGCCAAGGCAGGCGGCTGGGAGGTGGTTGTAGCGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCACCATTGAGCACTG<br>AGTGAACGAGACTCCATCTGCAATCCCGGCACCTCGGGAGGCCGAGGCTGGCGGATCACTCGCGGTTAGGAGCTGGAGACCAGCCCGGCCAACACAGCGA<br>AACCCCATCTCCACCAAAAAAAAACGAAAACCAGTCAGGCGTGGCGGCGCGCGCCTGCAATCGCAGGCACTCGGCAGGCTGAGGCAGGAGAATCAGGCAG<br>GGAGGTTGCAGTGAGCCGAGATGGCAGCAGTACCGTCCAGCTTTGGCTCGGCATGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGAGACGGGAGAGGGA<br>GAGGGAGACGGGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGTGATGGGAGAGGGAGAGGGAGACGGGAGAGGGC</font><font color="green"><u>NNNNN</u></font>cttttatttatttatgttt<br>tagacagtttcactctatcacccagggtggagtgcagcggcacaatctcagctcactgcaacctctgcctcctgggctgaagcgattcttatgcctcagc<br>ctcctgagtagctgagattaccggcacccaccaccatgcccagctaatttttgtatttttagtagagatggggttttgccatattgcccaggctggtctc<br>caactcctgggctcaaatgatctgcccgcctgggcctcccaaagtgctagcattacaggcatgagccactgtgcccggcatcattgcttttaaattgtga<br>aaagtattcctgtgatttgtttatcccttaacctatttatggacattgggttgtttccagttttgtgccatcacaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr13	41121736	41121737	3000066	0	-	1104685158586	TCGTGTTTCTTTGTGAATCATTTT	TGTGCTCTCTGAAACATGTGC	OTHER	SVA	SVA_F	ggttcataacttaacgtaaattacaatgaacaatccaaggaattagattatttcccgtcccagccagctttgtaaaggcacaacacgtgttgcagtgatc<br>acttaaatttgtacctaacttgtgcaagctacccctggtggtggaatgctgcccttctcagagtgaggctgaatgtgggcctaaagtatccagcatattt<br>tcttccaactctgaaattctgtggcttaggtcttgttactagaagtgaattctgtttcaccattaccagatattataaagttagaggtgcatttcagtag<br>aaaaaaataacattctcccctcaccccccagcaataaacctttggaaatgaaaaaacaatcaacttgtgatgaatactaacagtactaaa<font color="green"><u>GATCATTTTT<br></u></font><font color="red">CGCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCGTCTCCCTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCAT<br>CTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCAATGCCTGCGATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAG<br>ACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCACGAGTGATCCGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCT<br>CGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAA<br>GTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTG<br>CCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGTGCCTCTTCCCAGCCGCCATCACATCTAGGA<br>AGTGAGGAGCGTCTCTGCCCGGCAGCCCATCGCCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCCGCC<br>GAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGG<br>AGACCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCC<br>AACCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCGCCTGGCCAGCCG<br>TGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCC<br>CCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGG<br>GGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGG<br>GGTCAGCGCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAG<br>CCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTTGGGGGGTCAGCCCTCCGCCCGGCCAGCC<br>GCCCCGTCTGGGAGGTGAGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGG<br>GGGTGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCTGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCCCCCCCCGGCCAGCCGCCCCATCCGGGAGGTGA<br>GGGGCGCCTCCGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGG<br>CGGGAAAGGCGGGGAAAGGATTGGGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAA<br>AATTCCTCTGTCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGG<br>GCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACAC<br>TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCA<br>AATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAA</font><font color="green"><u>GATCATTTTT</u></font>aatactcaaaatactaatggaaaaatctactc<br>taatcaaaatgattcacaaagaaacacgaagtaaaactacctcaccagaaatacagataatattattatctgcctgactataattcatatattattcatc<br>taatacagcaaataaacctatttattcctttgcattttactataggccatattcttgtcattaaataattactagtgttcattttacaattattaaaact<br>aggaggtttgtaaagagtaaaactttaaagtaggaaaagttaaatatttattttagctaactgatatctcataattccttttggtttaaaatattaatat<br>tccttttttgtaatcataatgaaatctgtttaaagaaatctactgccctatgtttttg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:KIAA0564:NM:015058:37/45
0	chr13	81265712	81265713	3000067	0	-	1104685166796	GATGGCCTAATGCAAAAAGTTC	CTCTGCCTAGGAAAACCAGAGA	OTHER	SVA	SVA_F	cgtttccaaatgttctgattccagtactcaaaataaaaatttctctatcaactggaagtaagctaatcatttttaagaagtgtataatttattttcatga<br>atcattactatattcaatgaaataaatagaaaaaagatctcttccaacaaaccaaagctactgagtctagaaacttctgtgtaaatacttgaaggaacac<br>acattaaaaatagaataacaactctcttctttcccttctttccctctctcagtattgcgattctccaaaaggtagctcacggctgtcctctctctgaaca<br>ttctccctgggtgtgcatatttttcattgatgtgattaccatggttatgctcataacttcttgatggttaccttttcatgctttag<font color="green"><u>AAAAGTCTTAACTA<br></u></font><font color="red">GGAGCCATCACACTCGGCCACAAATAACAAGCTTTAAAAGCCACCCCTCTCCCTCTCCCTCTCCCGCTCCCTCTCCCTCTCCCTCTCCCTCTCCACGGTC<br>TCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGTCTGCCAAATGCCTGC<br>GATTGCAGGCACGCGCCGCCACGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCCGGTCTCCAGCCCCTAACCGCGAGTGATCCG<br>CCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCGATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTC<br>ACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTGTC<br>TCTGCCTGGCCGCCCATCATCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTA<br>GGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGC<br>CCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCAGGCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTG<br>AGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCA<br>GCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGAGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCAT<br>CCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGTCCGGCCAGCCGTGCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCC<br>GGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCTGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCAT<br>TGAGAATGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGA<br>AAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTTACCCCCAACCCTGTGCTCTCTGAAACATGTG<br>CTGTATCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTC<br>CCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACC<br>TTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAAAAATTTAAAAAAAAAAAAAA</font><font color="green"><u>AAAAG<br>TCTTAACTA</u></font>aatgaatatttgaaaaagtgtgtgaaaaattgtagagtccatgaataatgtgatctttcctcaaggaatttttactaaatccaccaaacag<br>ataattagattaggggcaatgtacctcaattttccctcctaggcttcccaaagcaggagattacaattatgagccacctcacccagcagactcaatccaa<br>cagcatttgtctgatctctttcctgttttttcctgaactttttgcattaggccatcagagattgaatttagagtatgaaatgttgaccttcttaatagac<br>tctaaattacaatttttgtctcctgagaaccactagcatttggtattttcagttttttaaaaatattttatattgatagaccactgttgtttcaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr14	80856536	80856537	3000068	0	-	1104685288518	TTTAATAGAACCCCTCCATCCA	AGTACCCAGGGACACAAACACT	OTHER	SVA	SVA_E	tttagagggtgtggctctgatgatcactgtcacatttcatctgtaggcacatcctaagccaggaagagacatcgcagagacctgtcctgaacacatcctc<br>ataagaggggagtgtcatccagtcttcttaaccccaaaggataatacaaaatagtgctgagagtaaatagattgctttcgctttagtttcagactgagat<br>cttgaggattaagtaagatgtgtgcatgtgcaggcaggagtagaaataatgaatgtaagatgtagctttaacgtgtggactttgtaatttttgagatgag<br>agtgaaaacttcagccctcacttagaaagaaatcacatttggctggaagtgctgtttctcccccatgttatgctatgtaatggattaatta<font color="green"><u>ACCATTTTT<br></u></font><font color="red">TGCCAGGCTGGTCTTGAACTCCCAGGCTCAAACAATGTCCCCACCTTGGCCTCCTACAGTGCTGGGATTACAAGGGCGTGAGCCACCACACCTGGCCTGT<br>ATAAGTCTTTCCTGGGAACATGCATGTGGAAGGTATTCAAAAAACATTTGTTAGGGATAAAAGACTTTATGGTATCTCCCCTCTCCCCTCTCCCCTCTCC<br>CCCTTCCCACGGTCTCCTTCCACGGTCTCCCTCTGATGCCGAGCCAAAGCTGGACGGTACTGCTGCCATCTCGGCTCACTGCAACCTCCCTGCCTGATTC<br>TCCTGCCTCAGCCTGCCGAGTGCCTGCGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTTTTTTTTTTTTTGGTGGAGACGGGGTTTTGCTGT<br>GTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTTGTTCACTCAGTGCT<br>CAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCCCCCAAAGTGCCGAGATTGCAG<br>CCTCTGCCCAGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCATCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCCCAGTC<br>TGGAAAGTGAGGAGCGTCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGCGGGGGGGGGGTCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGG<br>GGGGGTCAGCCCCCCGCCCGGCCGGCCGCCCCGTCCGGGAGGTGAGGGACGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCTGGCC<br>AGCCGCCCCGTCCGGGAGGTGAGGGGCGCTTCTGCCCGGCCACCCCTACTGGGAAATGAGGAGCCCCTCTGCCCGGCCACGACCCCGTCTGGGAGGTGTG<br>CCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGGAAAAAATTGAGAAATCGGATGGTTGCC<br>GGGTCTGTGTGGATAGAAGTAGACCTGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGATCTGTGACCTTATC<br>CCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCA<br>GCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGA<br>CCTTTGTTCACTTGTTTATCTACTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAATAAAA<br>AAAATAAATAAATAAATTAAAAAA</font><font color="green"><u>ACCATTTTT</u></font>cacaattactctcctctttaaatctatttccttgagataggactttgcagctcctcttatcaagggt<br>tggagtctctttccctagcctgtgaatgtgggcttggcctttttacttactttagccaacagaattcatagaagtgaaggtgtgtgggtatgtcagttcc<br>aagcccaggtcccaagccaaggtcttaagaggctcacttacacaattctgcttgctctcctagaatctggcgtctcttggaatgtagacagaatgggctt<br>gcttgctgtggcccagagaccccatcaccccaggtgacagtgaccttacactggccacgtgagtgaggcaattctagaccagccagctaacctcagacac<br>ttgagtgggcctagcagagatcgg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:STON2:NM:033104:3/5
0	chr14	91689174	91689175	3000069	0	-	1104685285614	NA	NA	OTHER	SVA	SVA_F	aaagaaaaactccctttgacattttaaatctcaaaataagaaactgaaaagaaaaacaaaaaagaaacagaaaaatattttcagcactacgaccaataaa<br>aatgattttttcctaagagctcttccaaattagttaagaaaaggatgatcaacacatgaaaaagcacaagatacttaaaaaggcaatttacaaaataaga<br>aagacaaataactactggccatgaaaagatccttaattttactaatttttgaaaagcacaaaatataaaaaacataattgttttcatctatgagattggc<br>aatgccatacatggggaaagagtaccttcttccattatctgttggaaaattagtgcaactatgttaaaaggcaatttgctaacat<font color="green"><u>CAAATTTTATTTTTA<br></u></font><font color="red">GGGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCA<br>CCCCGTCTGGGAAGTGAGGAGTGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGT<br>CTCCGCCCAGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCG<br>TCTGAGATGTGGGGAGCGCCTCTGCCCCACCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCTGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCT<br>GCCCGGCCGCCCCGTCTGAGAAGTGAGGGGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAG<br>AAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCA<br>GCCCCCCGCCCGTCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCC<br>CGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGC<br>CCCCTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGA<br>AGTGAGTAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAG<br>AAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTA<br>AGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCTCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGATTAAATGGAT<br>TAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACA<br>AACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCC<br>TGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAATAAAATAAAATAAAAAAAATAAAAAAAA</font><font color="green"><u>CAAATT<br>TTATTTTTA</u></font>acatttgacacagtatttctacttctaggaatttatcctactgaaacaatcacaaatgtgtaaaaaaaaagtacattcgtacattgcagca<br>atgcttatagtagtaaaaaactggacaaaattttaaaatccatcaaaatggaatgattaaatcagtagttctcatatatttatctcaggactaccttaga<br>ctcctaaaaattagagaaccccaaagagctttttgtttttgtgggttatatttatcaatgtctaccttatcagaaattaaaactgagcaatttttaaaat<br>atttatctgttcatttaaaaaataataaaaccagcagggcatggtggcttatacctgtaatcctagtactttgggaggtcgaggcaggcagatc	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intron:CPSF2:NM:017437:9/16	
0	chr17	4899933	4899934	3000070	0	-	1104685548264	ACGGTTCCTTCTCCTCACCTA	AATCAGGGACACAAACACTGC	OTHER	SVA	SVA_F	aggcagaggttttggtgagccaagatcacaccattgcactccagcctggtcaacaagagcaaaactccaaaaaaagaaagaaagaggccaagtgcggtgg<br>ctcacacctataatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcaagaccatcccggctaacacggtgaaaccccgtctat<br>actaaaaatgcaaaaaaattagccgggcgtggtggtgcattcctgtaaccccagctactcaggaggctgaggcaggagaatcacttgaacccggaagcag<br>aggttgcagtgagccgggatcgtgccattgcattccagcctgggtgacaaaagcgaaactctgtctcaaaaattaaa<font color="green"><u>AAAAAAAAAAAAAAAAAAAAAAG<br></u></font><font color="red">CCCTCTCCCTCTGTCTCCCTCTCCCCACGGTCTCCCTCTCATGCGGAGCCGAAGCTGGACTGTACTGCTGCCATCTCGGCTCATTGCAACCTCCCTGCCT<br>GATTCTCCTGCCTCAGCCTGCCCAGTGCCTGCCATTGCAGGCACGCGCCGCCATGCCTGACTGGTTTTGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGG<br>CAGGTCTCCAGCCCCTAACCGCGAGTGATCCCGCCAACCTCAGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGC<br>CCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCC<br>GGCCGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTG<br>AGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCC<br>GCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGTGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGA<br>GCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCCGGCAGCTGCCC<br>CGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCATCTCCGCCCGGCAGCCACCCCGTCCGGGAGGGAGGTGGGG<br>GGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCCCCCCCCGCCCACCGCCCCGTCCGGGAGGTGAGGGGCG<br>CTTTTGCCTGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGG<br>ATGACAATGGCGGCTTTGTGGAATAGAAAGGCAGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGG<br>GAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTG<br>CTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGGGTGCTCGTTAAGAGTCATCACCAATC<br>CCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACC<br>TTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTA</font><font color="green"><u>AAAAAAAAAAAAAAAAAA<br>AAAAG</u></font>aaaagaaaagaaatgaaaaagaaagtgaaggggagaaaagcatctgtaaaagcccaagggtggtaggatgagagctcgtttccctgtgcacctgg<br>ggatgcacactcccctggaggaccagggaggcgccctcgtcctcttagggccactctaggtgaggagaaggaaccgtctattgtcctagaaaggccgatc<br>ctctctaggcttccaaatcgatggtgagctggaagagtggtgatgcggctcatcttcagagcgctttcttgtgctgtcgttgtcctccagagaagaggtt<br>gggggctgtgcaagatgggacaatgaccacccagggtaggcccatgtcatagtatggcagtgccgaggccttaaaaatctat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr17	78353281	78353282	3000071	0	+	1104685138531	CAGTGATGAGTCTGAATGACAGG	AAAATTGAGAAATCGGATGGTT	OTHER	SVA	SVA_E	cagcgtggcaggagggtggcgtgtgcgtgatcgtgtggctcagggtcagcgtggcaggagggcggcgtgtgcatcgtcgtgtggctcggagtcagcgtgg<br>caggagggcggcgtgtgcgtcgtgtggttcggagtcagcgtggcaggagggcgtcgtgtgcgtcgtgtggttcggagtcagcgtggcaggagggcggcgt<br>gtgtgtcgttgtgtggctcggagtcagcgtggcagcagggtggcgtgtgtgtcgtgtggctcggggtcagctcagcctccctggcgtggcagcgtgtgtg<br>cgtcgtgttgctcagaggcggtgtggcctccctggtgtggatgcgctgtgggggaaagctgcatcggatcagtgatgagtctgaatgacaggctc<font color="green"><u>NNNNN<br></u></font><font color="red">CTTTTTTTTTTTTTTTTTCCCAAGGCAGAAGAATTTTTCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTATACTTCTATCCACACAGACCCGGCAAC<br>CATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCATCCCCAATGAGCCGCTGGGCACACC<br>TCCCAGACGGGGTCGTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCGGGGCAGAAGCGCCCCTCACCTCCCGGATGGGGCGGCTGGCCGG<br>GCGGGGGGCTGATCCCCCCACCACCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCTGGGCAGAGGCGCCGCT<br>CACCTCCTGGATAGGGCGGCTGGCTGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGTTGGCCGGGCAGAGGGGTCCTCACTTCCCAGT<br>AGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCCGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACAGGGCGGCTGGCC<br>GACCCCCCCCCCGCCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCC<br>CGGACGGGGCGGCTGGCCAGGCGGGGGGCTGATCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCACCTCCCTCCCGG<br>ACTGGGCGGCTGGCTGGGCGGGGGCTGACCCCCCCACCTCCCTCCCAGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCCAGTAGGGGCGGCC<br>GGGCAGAGGCGCCCCTCACCTCCTGGATAGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGG<br>GTCCTCACTTCCCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCCGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCG<br>GACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCACCTCCCTCCCGGACTGGGCGGCTGGCCGGGCGGGGGCTGAGACAGGCTCCCTTTC</font><font color="green"><u>NNNNN</u></font>ctg<br>ttggagaaagtgaaaccgcctttcttgctggcagaaatgatgtcttagcagtctgtagcggccggtgtgaacgggttggttctcaaggagacagactttt<br>ctagtgttcttagggtgctgtgtgttagcgaccttcagtttgtttcaagtgctataatacgtgtggtttgggaaggaattacttggttaaggtcagctca<br>cactccgtcctggatgatggcacattccagagacgcgtgttgtgttgcagtgttgggtgtgcagctcactctgtaggaagttgctcattaggcacagtgt<br>tcgtggctagtttctcaaagctgctgtggggaatgttcagtgctgtaccaggcagggttctccagagaagcagagcccataggatgtgtgtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intron:TBCD:NM:005993:9/39
0	chr19	23803144	23803145	3000072	0	+	1104685516018	TTAAGCAGCATGGAAAAATGG	GAGTGAACGAGACTCCGTCTG	OTHER	SVA	SVA_E	aaacatcagtttctaaaaaaaaaaaaaagaaaaaaaaatgctgcaataattatgagtctataaatgactacttatatgaccatatatgtgaaagtttata<br>tatgtgctgcattctattttattagtctactttttcacctttatactcatatcaaattgtttaatttggtagctttgtaatgtgttttgaatcaggcact<br>ttaatgcctgcagcattctttctttctttttttttttttaatattgttgggtagtttgtttttcttttgagtctctgtatacttttgaggttggtgtttc<br>tatttcttcaaaaatgcaatgagaaatttgaaaaatattgcattaaatctgtagattgcattgagcaggatggactctgcaatat<font color="green"><u>AAGTATTTCAACCTT<br></u></font><font color="red">TAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCGTTACAACCTCCACCT<br>CCCAGCCGCCTGCCTTGGCCCCCCAAAGTGCCGAGATTGCAGCCTCTGCCCAGCTGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCCCCCA<br>TCGTCTGGGATATGAGGAGCCTCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGCGAGGAGCGCC<br>TCTTCCCCGCCGCCATCCCATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTATCTG<br>GGATGTGAGGAGCGCCTCTGCTGGGCCGCAACCCTGTCTGGGAGGTGAGGAGCGTCTCTGCCCAGCCGCCCCGTCTGAGAAGTGAGGAAACCCTCTGCCT<br>GGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTCCGGCAGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCGGGA<br>GGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCTCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGCGGGGGGGGGGTCGGCCAGCTGCCCTGTCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCTGG<br>CCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCTGGCCAGCCGCCCCGTCCGGGAGGGT<br>GGGGGGGGGTCAGCCCCCCGCCCGGCCAGCTGCCCCATCCAGGAGGTGAGGGGCGCTTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCC<br>CGGCCACGACCCCGTCTGGGAGGTGTGCCCAGCGGCTCATTGGGGATGGGCCATGATGACAATGGCGGTTTTGTGGAATAGAAAGGCGGGAAGAGTGGGG<br>AAAAAATTGAGAAATCGGATGGTTGCCGGGTCTGTGTGGATAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTT<br>GGGATCCTGTTGATCTGTGACCTTATCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGT<br>GCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTTAAGTACCCAGGGACACAAACACTGCGGAAGGCCGCA<br>GGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTACTGACCTTCCCTCCACTATTGTCCTATGACCCTGCCAAATCCCCCTCTGCG<br>AGAAACACCCAAGAATGATCAATAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>AAGTATTTCAACCTT</u></font>tgtgtaagagcacactcaagagtgtgttgtttagtttctatat<br>atttgtaaatttttcagtttttttttttgcttttatcgttgtatactctcattccattttggtcatagaatgtagttcatagaaatttacttttaaaaaa<br>tttgataagacttcctttttgtcctaagatgtggtctttcaagggaaatgttgtatgagctattgagaagggtgtgtattctgatgttgttgaggagtgt<br>tctccataactctgtttggaataattgttttatactgcctttaagtagtctgttctcttattaacattctttcttgttttatttttattacaaaaagtgt<br>ggtattaaaatatattgttctaattatattgctttctgtgtg	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	downstream:RPSAP58:NR:003662
0	chr3	149090543	149090544	3000073	0	+	1104685605386	ATGCTTGAAGGCAGTATGCTC	CCCAGGGGACAAACTTCTAAA	OTHER	SVA	SVA_F	ttaatgaacaagttacgactgtgggtccctggagaaaagacagaacagaacttgtctcagagttgtcccatcagaagtgggagaaagctgtgctattcat<br>ctaccaactcctaaacctccttgctgacaactgttcccaggggctattaccccttccccagtgctgcctgacccatacccagctgcgcatgctcctgcca<br>ccagagaaagcccaagggagagaattgcaggtatttgcagtaagaagccatcaatatattcaggaaaggcaagtgtccaggcaatctgggtggattgtgg<br>ctgctgcccacactttcttagattccattctacggtgagaggagaccattatctgttctacattgtttcaacagatttagttt<font color="green"><u>TGTTCATTTTCATTGTT<br></u></font><font color="red">GGCCAACCTCGGCCTCCCGAGGTGCCGGGATTGCAGACGGAGTCTCGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGC<br>TCACTACAACCTACACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGAAGTGAGGAGTG<br>TCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATC<br>TAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCT<br>GCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGTCTGGGAGGTGAGGAGAGTCTCTGCCCGGCCGCCCCGTCTGAGAAG<br>TGAGGAGCCCCTCCGCCCCGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCAGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGG<br>CAGCCACCCCGTCCGGGAGGGAGGTTGGGGGGGGGGTCAGCCCCCCCTGCCCGGCCAGCCACCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCC<br>CCTACTGAGGAAGTGAGGAGCCCCTCTGCCCAGCCAGCTGCCCCGTCCGGGAGGGAGGTGGGGGGTTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGG<br>AGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCACCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCC<br>CCTCTGCCCGGCCACCGCCCCTTCTGGGAGGTGTGCCCAGTAGCTCATTGAGAACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAA<br>AGGTGGGGAAAAGATTGAGAGATCGGATGGTTGCCGTGTCTGTGTGGAAGGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCC<br>TCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTG<br>CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGTATGCTCGTTAAGAGTCATCACCAATCCCTAATCTCAAGTAACCAGGGACACAAACACTGCGGA<br>AGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCC<br>CCTCTGCGAGAAACACCCAAGAATTATCAATAAAAAAATAAATAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>TGTTCATTTTCATTGTT</u></font>caaatacgccgcagtcaga<br>gaacatctgacccttctctgtagagaaaaataaatgcccagtaggcagacagagaataatgggcctggcttgacctagaatggtaaaaatttagaagttt<br>gtcccctgggaaaagaggtcttacagtgctcagagtagctaggatgaactgagaaagctttttacctctttaaagaacagtgtaagatggactgtagcct<br>ttgaaaagtacctgtgaggccagagttagcaagatttttaaagagccaagttatgaggtaaatgattagctaactagagtttgtcacaattaggaagtga<br>gaatgaaattcaatttgtgtttagaagtttattttgcattaagctcttctatctagggttttaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic
0	chr5	55483770	55483771	3000074	0	+	1104685095005	TGGTGACCCTACTCCATTTTT	AGCAGAAGAAACAGTCCCTGA	OTHER	SVA	SVA_F	ctgggtgacacagtgagaccacatctcggaaaaaaaaaaatctatatatatatatatgtgtgtgtgtatatatatgtatatatacgtgtgtatatataca<br>tatacatacacacgtatatgtgtgtatatacacatatatgtatatatgtatatatgtgtgtgtatatatatataaaaaatttttgtgcctcactaaagct<br>tttgtgcaagctactgaactagaaactggggatacaaagataaaaaaaggcatggtctgcctctagaagtttatagggttggaggagagtgggagaggaa<br>ggtgggggctcctaagtagtggtgaccctactccattttttttttttttagatgttcggtcttaggctaaaacttctgattcat<font color="green"><u>AAAAACTTTTGTTTGT<br></u></font><font color="red">TGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCA<br>AATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTAAAAAAAAAAAAAACAACAAAAACAAAAACAAAAACAAAAAAATAAATGA<br>ATAAAATAAAACAAGTACAAATTTAAACTAGAAAAAAAAA</font><font color="green"><u>AAAAACTTTTGTTTGT</u></font>tatgttaccttttgctaactgtaaagttaaaaatttcaagtcag<br>ggactgtttcttctgcttttggttctatctcaggaatgtggtaagtagaagtgatgctaagaattatgtccaaaaggtcacatctgtttttgcaacttaa<br>atttattttctcagagtggttctacaattgaagttttgtttgtcagactgctcacaaaaatctgcttacataagaatgtgcatttaatatatcctaaaca<br>atatatatatcctaaatgctgtgcataacagtgcttctctggttaaatgcattcaaagttctaacccagatgccaacagctcagagcctctcttgataga<br>acactcttcctgtcaaggctaaaatgagagcaggagaggt	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	396	141	NA	intron:ANKRD55:NM:024669:6/12
0	chr5	141359854	141359855	3000075	0	-	1104685237087	NA	NA	OTHER	SVA	SVA_Fsp	gaaaaagggtaggaatgaacagatgagcaataaattgtcatgttggggctgtacctgagatccaaacgaggatacagctgttataaagattaaggcagat<br>ttgtgatgagggatattattgcaaggtatgcaaaaatacatttaggtttttttttttttttaaagttaatataatggaatatcttaggtcaatatagcca<br>attaaggaggtagatacagaagttaaaagaagggtttaatttttttaactattttgaggctgggtgcagtggctcatgcctataatcccagtgctttggg<br>aggccaaagcaggaggatcacctgagatcagcagttcaaaaccagcctgggcaacataacaagaccctgtctctacgaaatttt<font color="green"><u>TGCTTGGCTAATTTTT<br></u></font><font color="red">AGACACCTATAATCCCAGCGCTTTGGGAGGCTGAGGCGGGCGGATCATGAGGTCAAGAGATTGAGATGATCCTGGCCAACATGGTGAAACCCCTTCTCTA<br>CTAAAAACAAACAAACAAAAATAGCTGGGCGTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCTGAGGCAGGAAAATCGCTTCAACCT<br>GGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTGCACTCCACCCAGACAACAGAGCAAGACTCCGTCTCAAAAAATAAAATAAAATAAAAGGAAA<br>AGAAAAAAGAAATTTCAGGCAGAGGAGGTCGCGGCGCCGGAGGCCCCAGAAGGGTCGAAGGCGCCGCGGGCTGGGGTCGGTGGCTTAGGGAGCCCGTCTG<br>GCCATGGTGGCCGCGGCTGGTGGTTGGCGCGGCTGCGCTGCGGCCCGGGGCAGTGCGGAGCCAGGACAGTCGCGGCGCTGACGCCCGCGGCCCCCAGCTG<br>CAGATATGAAGCGGAGCTGCTACCGCGACCGACGGCAGCCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTT<br>GCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGTACGGGCCCCGCGGGGCCCGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCC<br>CAAAGTGCCGAGATTGCAGCCTCTGCCCGGCTGCCACCCCGTTTGGGAAGTGAGGAGTGTCTCTGCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCT<br>CTGCCTGGCTGCCCAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTA<br>GGAAGTGAGGAGCGTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCG<br>GCCGAGACCCCGTCTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTG<br>AGGAGCCCCTCCGCCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCA<br>GCCACCCCGTCCGGGAGGGAGGTGGGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGTCAGCCCCCCCGCCCGGCCA<br>GCCGTGCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGG<br>GAAGTGAGGAGCCCCTCAGCCCGGCCAGCCACCCCGTCCGGGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGT<br>AGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGG<br>CGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGCCCGGC<br>CAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCGTCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACT<br>GGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGG<br>TTGGGGGGTCAGCCCCCGCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCAGCCAGCCGCCCCGTCCGGGAG<br>GTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAGGTGAGGAGCCCCTCTGCCCGGCCACCACCCTGTCTGGGAGGTGTGCCCAACAGCTCATTGAGA<br>ACGGGCCAGGATGACAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAA<br>GTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCT<br>GAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTC<br>ATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTA<br>TCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAA<br>AAAAAAAAAAAAAAAAGAATGGACTTTCCCAGGCCAGCTGTGGTGGCTCACGACTGTAATCCCAGCACTGTGGCAGGCCAAGGCGGGCAGATCACCTGAG<br>ATCAGGAGTTCAAGACCAGCCTGACCAACACGGAGAAACCCCGTCTCTACTAAAAATAAAAAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTAATCCCA<br>GCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGTTGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGA<br>GGGAAACTCCATCAAAAAAAAAAAAAAAAAAGGACTTTCTCAAAGAAAATGTATTTAAATGTCTGCACCAATAATTCCAGCATGTGTATGAATAAATATG<br>ATATGTCCTTTACAGTGAAGGTCTAATAAGATTTACTTATATGCCTTTTCCTTCTTAGAAAGTCTCTAAGAAATAAAATATCTTTACAATCAAAAAAAAA<br>AAAAAA</font><font color="green"><u>TGCTTGGCTAATTTTT</u></font>tggtggtgcatgcctgtagtcccagccgctcagaaggctgagacaagaggattgcttgagcccaggagttcaagactg<br>ctgtgaactataatcgcatcactgtaccccaactctggacaacagaacaagaccccatctcaaaaaaatatttttttttgatataaatccaatgattttt<br>atgtttatggaatactgcacttccttaccacaatccttttttttttttttttttaaagagagaaagtctcaccctgtcttccaggctggagtgcagtggt<br>gcgatctcagctcactgcaacctctgcttcctgggttcaagtgattctcctgcctcagactgcccagtagctgggattacaggtgtgcaccaccacaccc<br>acctaa	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	C:Comparative personal genomics:Venter	NA	NA	NA	NA	NA	intergenic	
0	chr6	153471550	153471551	3000076	0	+	1104685223392	CAAGAGGGTGGAATCTCCTTC	CAGAGGCGTAGTGGCTGTATC	OTHER	SVA	SVA_Fsp	atctcaaaattcttctgcttcagttaattatgctctaaattctcagaaatgtacctcagaatactaggaaacaagtttggcaggcaaatggcagaaatgg<br>cacagggatgaagatgaaacaggcattcattcctgggaaattcctggagggaagtcagatttccagcctgagaaaaaataagctcacttctcccccttgt<br>gcccagaacttcagatgctatgagccatatatttccttgaatgagagaaggcaagagggtggaatctccttcttttgacctctcattccaacatttctat<br>actgcaattaatacatttgtagtagtacaatatattggtttgaaacagactgatgtcagtttttaaaacaattaaggtgt<font color="green"><u>GGAATGTAGGGGAATTTTCT<br></u></font><font color="red">GAAAGAAGTAGACATGGGAGACTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGT<br>GCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTT<br>AAGAGTCATCACCAATCCCTAATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCGGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCAC<br>TTGTTTATCTGCTGACCTTCCCTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTA<br>AAAAAAAAAAAAAAAAAAAAAAAAGAATGGACTTTCCCAGGCCAGCTGTGGTGGCTCACGACTGTAATCCCAGCACTGTGGCAGGCCAAGGTGGGCAGAT<br>CACCTGAGATCAGGAGTTCAAGACCAGCCTGACCAACACGGAGAAACCCCGTCTCTACTAAAAATAAAAAAAATTAGCTGGGCGTGGTGGTGCATGCCTG<br>TAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGTTGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGG<br>CAACAAGAGGGAAACTCCATCAAAAAAAAAAAAAAAAAAAGGACTTTCTCAAAGAAAATGTATTTAAATGTCTGCACCAATAATTCCAGCATGTGTATGA<br>ATAAATATGATATGTCCTTTACAAAAAAAAAAAAAAAAAAAAAA</font><font color="green"><u>GGAATGTAGGGGAATTTTCT</u></font>atctgatacagccactacgcctctggtaccccttca<br>cttagccttatgtatttgtacctaattaatgtatgaatgcaagagtgtgcatgtgtgtgtttgcgtgtagacagacagatcaatctttatagccttgctc<br>tacaaaggagtccaaatggagctctatgaaccaattaaaaaaacctcaaagaccaagtatagccatctcatgggggcaggcatttttgtctgttttgttc<br>cctagtcaatctgcatctctcagaacagtgctagcacatagtgggtgctcagtaagtaatttgtttaatcaaaatcacttactcctctttcccagactat<br>ttctataaaagccaaatgcaatcaaacattagaaacaagcaaat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	1037	175	NA	intron:RGS17:NM:012419:1/5
0	chr9	133279632	133279633	3000077	0	-	1104685068643	CTCACATCCCAGACGATGG	GGGCAACAGTCCTGGTAAAA	OTHER	SVA	SVA_F	tcacttgaggtcaatagttcaagaccagcctggccaatatggtgaaaccccatctctactaaaaatacaaaaatcagttgggcgtggtggcaggcacctg<br>tagtcccagctacttgggaggctgaggcagaagatcacttgaacccgggaggtagaggttgcagtgagccaagatcaggccactacactccagtctgggc<br>gacacagcagagactccatctccaaaaaaaaaaaaagcccaagatggtagccgcaccatgggccagaggggcaacagtcctggtaaaagcaggatagagg<br>cttctggaggaacaaacaggatggattatctaccatttccaggaaattacaaattagtattgattgcattttcttggagcaatgt<font color="green"><u>AAAAAGCAAAAGATA<br></u></font><font color="red">GAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGGACGGGCCCCGCGGGGCCGGAGGGCAAGGAGCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGAT<br>TGCAGCCTCTGCCCGGCTGCCACCCCGTCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGATGTGAGGAGCCCCTCTGCCTGGCTGCC<br>CAGTCTGGAAAGTGAGGAGCGTCTCCGCCCGGCCGCCATCCCATCTAGGAAGTGAGGAGCGCCTCTTCCCAGCCGCCATCACATCTAGGAAGTGAGGAGC<br>GTCTCTGCCCGGCCGCCCATCGTCTGAGATGTGGGGAGCGCCTCTGCCCCGCCGCCCCATCTGGGATGTGAGGAGCGCCTCTGCCCGGCCGAGACCCCGT<br>CTGGGAGGTGAGGAGCGTCTCTGCCCGGCCGCCCCGTCTGAGAAGTGAGGAGACCCTCTGCCTGGCAACCACCCCGTCTGAGAAGTGAGGAGCCCCTCCG<br>CCCGGCAGCTGCCCCGTCTGAGAAGTGAGGAGCCTCTCCGCCCGGCAGCCACCCCATCTGGGAAGTGAGGAGCGTCTCCGCCCGGCAGCCACCCCGTCCG<br>GGAGGGAGATGGGGGGGTCAGCCCCCCCACCCGGCCAGCCGCCCCGTCCGGTAGGGAGGTAGGGGGGTCAGCCCCCCGCCTGGCCAGCCGCCCCATCCGG<br>GAGGGAGGTGGGGGGGTCAGCCCTCCGCCCGGCCAGCCGCCCCGTCTGGGAGGTGAGGGGCGCCTCTGCCCAGCCGCCCCTACTGGGAAGTGAGGAGCCC<br>CTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCGGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCG<br>GCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGT<br>CTGGGAGGGAGGTTGGGGGGGGTCAGCCCCCCCGCCCAGCCAGCCGCCCTGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGA<br>GGAGCCCCTCTGCCCGGCCAGCCGCCCTGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTTGGGGGGT<br>CAGCCCCCCGCCCGGCCAGCCGCCCCGTCCAGGAGGGAGGTGGGGGGGGTCAGCCCCCCTGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTC<br>TGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTGCCCAACAGCTCATTGAGAACGGGCCAGGATGA<br>CAATGGCGGCTTTGTGGAATAGAAAGGCGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGAAAGAAGTAGACATGGGAGA<br>CTTTTCATTTTGTTCTGCACTAAGAAAAATTCCTCTGCCTTGGGATCCTGTTGATCTGTGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGT<br>GTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCAATCCCTA<br>ATCTCAAGTAATCAGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCC<br>CTCCACTATTGTCCCATGACCCTGCCAAATCCCCCTCTGTGAGAAACACCCAAGAATTATCAATAAAAAAATAAATTTAAAAAAAAAAAAAAAAAAAAAA<br>AAAA</font><font color="green"><u>AAAAAGCAAAAGATA</u></font>aaactttaatgcagtttaatgtatcaaatttttctactttggttactgctttctgtgtccgatttttccaaaatcatgaag<br>atatcctatgttttattctagaggctttattgttttatctttcatgtttacatctatgatctacctaacactgatttctcgatatgatttgtgataaaag<br>tttcatttttttcccttatggagagttcagttctcccagtaccttttctgaaaaggccatcttttctctttgtcatgtgtcataaattaagtgactactg<br>atgtgcagtttgtttgaagactgttccctccaatcagcctatttgtctatctttttggcaacactgcattgtcttaatcactgcagcttttataaagtct<br>ggat	Venter	<UL><LI>Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S,Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete humangenome. Genome Res. 2009 Sep;19(9):1516-26. Epub 2009 May 13.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19439515">PMID:19439515</a>.</LI><LI>The diploid genome sequence of an individual human. Comment in:    PLoS Biol. 2007 Oct;5(10):e266. PLoS Biol. 2007 Sep 4;5(10):e254.  <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17803354">PMID:17803354</a>.</LI></UL>	E:Insertion-specific detection:PCR;C:Comparative personal genomics:Venter	NA	60	NA	NA	NA	intergenic